Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32670.t1 | XP_003603332.1 | 92.3 | 478 | 37 | 0 | 1 | 478 | 3 | 480 | 1.30E-174 | 622.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32670.t1 | D2XNQ9 | 92.3 | 478 | 37 | 0 | 1 | 478 | 3 | 480 | 3.1e-177 | 622.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32670.t1 | G7JAE4 | 92.3 | 478 | 37 | 0 | 1 | 478 | 3 | 480 | 9.2e-175 | 622.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32670.t1 | MTR_3g106485 | 96.862 | 478 | 11 | 2 | 1 | 478 | 1 | 474 | 0.0 | 937 |
| MS.gene32670.t1 | MTR_3g106480 | 94.979 | 478 | 24 | 0 | 1 | 478 | 1 | 478 | 0.0 | 931 |
| MS.gene32670.t1 | MTR_3g106420 | 94.351 | 478 | 27 | 0 | 1 | 478 | 3 | 480 | 0.0 | 899 |
| MS.gene32670.t1 | MTR_1g115145 | 89.770 | 479 | 42 | 3 | 1 | 478 | 1 | 473 | 0.0 | 855 |
| MS.gene32670.t1 | MTR_1g073400 | 91.632 | 478 | 36 | 1 | 1 | 478 | 1 | 474 | 0.0 | 853 |
| MS.gene32670.t1 | MTR_1g083190 | 90.795 | 478 | 36 | 1 | 1 | 478 | 3 | 472 | 0.0 | 851 |
| MS.gene32670.t1 | MTR_1g071130 | 86.192 | 478 | 37 | 2 | 1 | 478 | 1 | 449 | 0.0 | 841 |
| MS.gene32670.t1 | MTR_3g106430 | 91.614 | 477 | 36 | 2 | 1 | 477 | 1 | 473 | 0.0 | 837 |
| MS.gene32670.t1 | MTR_3g106470 | 81.342 | 477 | 33 | 2 | 1 | 477 | 32 | 452 | 0.0 | 738 |
| MS.gene32670.t1 | MTR_8g063830 | 80.430 | 465 | 50 | 5 | 1 | 464 | 1 | 425 | 0.0 | 674 |
| MS.gene32670.t1 | MTR_3g065540 | 64.348 | 115 | 14 | 1 | 40 | 154 | 14 | 101 | 4.97e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32670.t1 | AT5G25260 | 73.784 | 473 | 112 | 2 | 1 | 473 | 1 | 461 | 0.0 | 728 |
| MS.gene32670.t1 | AT5G25250 | 73.996 | 473 | 109 | 2 | 1 | 473 | 1 | 459 | 0.0 | 721 |
| MS.gene32670.t1 | AT5G64870 | 70.763 | 472 | 127 | 1 | 2 | 473 | 3 | 463 | 0.0 | 660 |
Find 117 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACGAGTATTTCTCATATC+TGG | 0.226123 | 3.1:-84474120 | MS.gene32670:CDS |
| CGAAGAAGGCCGTGGCTCTA+AGG | 0.294288 | 3.1:-84473791 | MS.gene32670:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.307216 | 3.1:-84472316 | MS.gene32670:CDS |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 3.1:-84474044 | MS.gene32670:CDS |
| TTAGTCCAAATGTTAATCTT+AGG | 0.325712 | 3.1:+84472238 | None:intergenic |
| TGTAGGTGCAAGAGGCTAAC+TGG | 0.327485 | 3.1:-84472570 | MS.gene32670:intron |
| CTCCCTGCCGTCTTCACAAT+TGG | 0.332748 | 3.1:-84474410 | MS.gene32670:CDS |
| CAATGCTAATGTTAAGCAAT+TGG | 0.346020 | 3.1:-84474156 | MS.gene32670:CDS |
| AACGAGTTCATTAACGTGAT+TGG | 0.349522 | 3.1:+84474319 | None:intergenic |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.350630 | 3.1:-84472104 | MS.gene32670:CDS |
| CAACTTGAGTTGAATCAATT+CGG | 0.350972 | 3.1:-84474191 | MS.gene32670:CDS |
| GTGAAATTGGTTCGAAATTG+AGG | 0.356446 | 3.1:-84474031 | MS.gene32670:CDS |
| AAGATTAACATTTGGACTAA+TGG | 0.359631 | 3.1:-84472235 | MS.gene32670:CDS |
| GAAGAAGGCGGCTTGGACTA+AGG | 0.362386 | 3.1:-84473838 | MS.gene32670:CDS |
| TCAGAATATCTTGCGATAAC+TGG | 0.373519 | 3.1:-84474569 | MS.gene32670:CDS |
| CGTATTTGAGGAGACTTTCA+TGG | 0.399951 | 3.1:+84474372 | None:intergenic |
| TTGAGCCTAAGATTAACATT+TGG | 0.412978 | 3.1:-84472243 | MS.gene32670:CDS |
| GGCTTGGACTAAGGCGGCTC+AGG | 0.415815 | 3.1:-84473829 | MS.gene32670:CDS |
| GGCTGGTGAAAGTGAGAAGC+AGG | 0.419667 | 3.1:-84473943 | MS.gene32670:CDS |
| ATCATGAGGTGAAATAAGTT+TGG | 0.429079 | 3.1:+84474349 | None:intergenic |
| ACTAATGGTGGTGATAATAG+TGG | 0.431222 | 3.1:-84472220 | MS.gene32670:CDS |
| CACGTTAATGAACTCGTTCA+AGG | 0.459703 | 3.1:-84474314 | MS.gene32670:CDS |
| TGAGAATCAGAGAGAGGCTG+AGG | 0.460493 | 3.1:-84473889 | MS.gene32670:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.462456 | 3.1:-84472518 | MS.gene32670:CDS |
| AAATAAGTTTGGCGTATTTG+AGG | 0.468280 | 3.1:+84474360 | None:intergenic |
| TGCTTCCATGACCATGGAGG+AGG | 0.479699 | 3.1:-84474261 | MS.gene32670:CDS |
| TGAAATTGGTTCGAAATTGA+GGG | 0.484739 | 3.1:-84474030 | MS.gene32670:CDS |
| CACGAGTATTTCTCATATCT+GGG | 0.486594 | 3.1:-84474119 | MS.gene32670:CDS |
| GGGAATAACTGAAGGTGCCA+TGG | 0.487818 | 3.1:-84472197 | MS.gene32670:CDS |
| AAACCAAAATCAACATGTAC+CGG | 0.488241 | 3.1:-84474604 | None:intergenic |
| CTTTGCGTATAGCTCTGCTT+CGG | 0.490908 | 3.1:+84472435 | None:intergenic |
| AAGACTGTCCATGAGCAAAC+AGG | 0.492575 | 3.1:-84472127 | MS.gene32670:CDS |
| GGACCAATTGTGAAGACGGC+AGG | 0.502590 | 3.1:+84474407 | None:intergenic |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.503335 | 3.1:-84472108 | MS.gene32670:CDS |
| GAAAACCTCCTCCATGGTCA+TGG | 0.505571 | 3.1:+84474256 | None:intergenic |
| GAAACAACTACACAGCAGTA+AGG | 0.507741 | 3.1:-84472336 | MS.gene32670:CDS |
| TTGGACTAAGGCGGCTCAGG+TGG | 0.510364 | 3.1:-84473826 | MS.gene32670:CDS |
| GGCTGAAGTCGAGGCGAAGA+AGG | 0.512238 | 3.1:-84473805 | MS.gene32670:CDS |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.519619 | 3.1:-84472103 | MS.gene32670:CDS |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 3.1:+84472119 | None:intergenic |
| GAAGACCGTGCATGATTGAC+CGG | 0.521386 | 3.1:+84474499 | None:intergenic |
| TGGCTAAGAAGAAGGCGGCT+TGG | 0.522658 | 3.1:-84473845 | MS.gene32670:CDS |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 3.1:-84474143 | MS.gene32670:CDS |
| GAAGAAGGCCGTGGCTCTAA+GGG | 0.526932 | 3.1:-84473790 | MS.gene32670:CDS |
| TTCTGAGTTGGCTAAGAAGA+AGG | 0.532968 | 3.1:-84473853 | MS.gene32670:CDS |
| GGAATAACTGAAGGTGCCAT+GGG | 0.534697 | 3.1:-84472196 | MS.gene32670:CDS |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 3.1:+84472180 | None:intergenic |
| CTCAAGTCCACGTACCGCCT+CGG | 0.541020 | 3.1:+84472261 | None:intergenic |
| CTAAGGGAAGCTGAGTTACA+AGG | 0.541402 | 3.1:-84473774 | MS.gene32670:CDS |
| GGCTCAAGCTAATTCTGAGT+TGG | 0.541784 | 3.1:-84473865 | MS.gene32670:CDS |
| GCAGAGGGGATTGTGACACT+TGG | 0.546780 | 3.1:-84472403 | MS.gene32670:CDS |
| GTTATTGCGATGCAGAGGGC+TGG | 0.549556 | 3.1:-84473960 | MS.gene32670:CDS |
| GAGAACGAAAGGGAGTTTCT+CGG | 0.549947 | 3.1:+84474430 | None:intergenic |
| GGTAAGGATCCCATCCAAGC+AGG | 0.550974 | 3.1:+84472094 | None:intergenic |
| AGTCGAGGCGAAGAAGGCCG+TGG | 0.552149 | 3.1:-84473799 | MS.gene32670:CDS |
| GTAGGTGCAAGAGGCTAACT+GGG | 0.558157 | 3.1:-84472569 | MS.gene32670:intron |
| TATCTTGCGATAACTGGTGC+CGG | 0.558862 | 3.1:-84474563 | MS.gene32670:CDS |
| TGCTAATGTTAAGCAATTGG+TGG | 0.560962 | 3.1:-84474153 | MS.gene32670:CDS |
| CACGGTCTTCGACCTCTCAC+CGG | 0.561698 | 3.1:-84474486 | MS.gene32670:CDS |
| GAATCAGAGAGAGGCTGAGG+TGG | 0.562176 | 3.1:-84473886 | MS.gene32670:CDS |
| GGCTCAGGTGGCTGAAGTCG+AGG | 0.562422 | 3.1:-84473814 | MS.gene32670:CDS |
| CTGGATGTTGTAGGTGCAAG+AGG | 0.562730 | 3.1:-84472578 | MS.gene32670:intron |
| CTCGTTCAAGGAATCATCGA+AGG | 0.568467 | 3.1:-84474302 | MS.gene32670:CDS |
| AAGACGGCAGGGAGAACGAA+AGG | 0.568717 | 3.1:+84474419 | None:intergenic |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 3.1:-84472358 | MS.gene32670:CDS |
| ACTTCGAAGGTATAGTTCAC+CGG | 0.571447 | 3.1:+84474467 | None:intergenic |
| TCCTCTGAAAACCTCCTCCA+TGG | 0.572262 | 3.1:+84474250 | None:intergenic |
| CCTCGCTGCTTCCATGACCA+TGG | 0.573283 | 3.1:-84474267 | MS.gene32670:CDS |
| AGGTATAGTTCACCGGTGAG+AGG | 0.574045 | 3.1:+84474474 | None:intergenic |
| ATTAATGCCGAGGCGGTACG+TGG | 0.575987 | 3.1:-84472268 | MS.gene32670:CDS |
| ATTAACATTTGGACTAATGG+TGG | 0.579465 | 3.1:-84472232 | MS.gene32670:CDS |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 3.1:-84472178 | MS.gene32670:CDS |
| GTGACACTTGGGAATGCTCA+AGG | 0.583871 | 3.1:-84472391 | MS.gene32670:CDS |
| TAAAACTCGAAAAGAAAGCA+TGG | 0.584686 | 3.1:-84474529 | MS.gene32670:CDS |
| CGAAGGTTATTGCGATGCAG+AGG | 0.587186 | 3.1:-84473965 | MS.gene32670:CDS |
| CTAATGGTGGTGATAATAGT+GGG | 0.587233 | 3.1:-84472219 | MS.gene32670:CDS |
| ACGAGGACCAATTGTGAAGA+CGG | 0.593813 | 3.1:+84474403 | None:intergenic |
| AAGACCGTGCATGATTGACC+GGG | 0.595662 | 3.1:+84474500 | None:intergenic |
| CAGAGGGGATTGTGACACTT+GGG | 0.598815 | 3.1:-84472402 | MS.gene32670:CDS |
| AAACAACTACACAGCAGTAA+GGG | 0.599439 | 3.1:-84472335 | MS.gene32670:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 3.1:-84472512 | MS.gene32670:CDS |
| GACCAATTGTGAAGACGGCA+GGG | 0.602478 | 3.1:+84474408 | None:intergenic |
| GCTCATAGCTTGAACTTCGA+AGG | 0.602578 | 3.1:+84474454 | None:intergenic |
| TTTCCCCGGTCAATCATGCA+CGG | 0.608303 | 3.1:-84474504 | MS.gene32670:CDS |
| AGTTACAAGGTGAAGTTGAG+AGG | 0.609202 | 3.1:-84473761 | MS.gene32670:CDS |
| GTGTCAGAAGCTAAGATGAA+AGG | 0.614706 | 3.1:-84474053 | MS.gene32670:CDS |
| TCATGGACAGTCTTAAACAA+AGG | 0.619848 | 3.1:+84472136 | None:intergenic |
| TCTGGGACAAAAGACGCAGA+TGG | 0.620243 | 3.1:-84474102 | MS.gene32670:CDS |
| CGCTGCTTCCATGACCATGG+AGG | 0.624081 | 3.1:-84474264 | MS.gene32670:CDS |
| GGAAGCAGCGAATCAAGCTA+AGG | 0.627544 | 3.1:-84474081 | MS.gene32670:CDS |
| TCGTTCAAGGAATCATCGAA+GGG | 0.628409 | 3.1:-84474301 | MS.gene32670:CDS |
| AATGGTGGTGATAATAGTGG+GGG | 0.629638 | 3.1:-84472217 | MS.gene32670:CDS |
| GATAACTGGTGCCGGAATCG+AGG | 0.630242 | 3.1:-84474555 | MS.gene32670:CDS |
| ATTGGTTCGAAATTGAGGGA+AGG | 0.631232 | 3.1:-84474026 | MS.gene32670:CDS |
| AGACGGCAGGGAGAACGAAA+GGG | 0.631236 | 3.1:+84474420 | None:intergenic |
| GAAGGTTATTGCGATGCAGA+GGG | 0.633633 | 3.1:-84473964 | MS.gene32670:CDS |
| CTCAGCTTCCCTTAGAGCCA+CGG | 0.634084 | 3.1:+84473782 | None:intergenic |
| TAATGGTGGTGATAATAGTG+GGG | 0.634711 | 3.1:-84472218 | MS.gene32670:CDS |
| GTTCATTAACGTGATTGGAG+TGG | 0.637668 | 3.1:+84474324 | None:intergenic |
| AACCAAAATCAACATGTACC+GGG | 0.642639 | 3.1:-84474603 | None:intergenic |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 3.1:-84472278 | MS.gene32670:CDS |
| AGAAGCAGGGAATTAAAGTG+AGG | 0.645883 | 3.1:-84473929 | MS.gene32670:CDS |
| TAGTGTTCAGTATGAAACCA+AGG | 0.647410 | 3.1:-84473685 | MS.gene32670:intron |
| TGGACAGTCTTAAACAAAGG+TGG | 0.649112 | 3.1:+84472139 | None:intergenic |
| GAAAATTGATGCAGAGACGA+AGG | 0.652587 | 3.1:-84473982 | MS.gene32670:CDS |
| TGAGTTGGCTAAGAAGAAGG+CGG | 0.655618 | 3.1:-84473850 | MS.gene32670:CDS |
| TATGAGAAATACTCGTGACC+AGG | 0.658029 | 3.1:+84474125 | None:intergenic |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 3.1:-84472313 | MS.gene32670:CDS |
| TGCTAAGATTAATGCCGAGG+CGG | 0.661554 | 3.1:-84472275 | MS.gene32670:CDS |
| CTTTCATGGTCGTCAACACG+AGG | 0.664330 | 3.1:+84474386 | None:intergenic |
| AAGGATCCCATCCAAGCAGG+AGG | 0.669932 | 3.1:+84472097 | None:intergenic |
| TGATTGGAGTGGCGATCATG+AGG | 0.675682 | 3.1:+84474335 | None:intergenic |
| GCTGGTGAAAGTGAGAAGCA+GGG | 0.692984 | 3.1:-84473942 | MS.gene32670:CDS |
| CGTTCAAGGAATCATCGAAG+GGG | 0.697360 | 3.1:-84474300 | MS.gene32670:CDS |
| AGACCGTGCATGATTGACCG+GGG | 0.723407 | 3.1:+84474501 | None:intergenic |
| CCATGGTCATGGAAGCAGCG+AGG | 0.728643 | 3.1:+84474267 | None:intergenic |
| GAAGGCGGCTTGGACTAAGG+CGG | 0.753883 | 3.1:-84473835 | MS.gene32670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTAAGATTATAACAT+GGG | + | chr3.1:84473324-84473343 | None:intergenic | 10.0% |
| !! | CATTATAAAACTAAATCATT+TGG | - | chr3.1:84473814-84473833 | MS.gene32670:CDS | 15.0% |
| !!! | ATATTTTAAAGGCTAAATAA+AGG | - | chr3.1:84473272-84473291 | MS.gene32670:intron | 15.0% |
| !!! | GTATATTTAAGATTATAACA+TGG | + | chr3.1:84473325-84473344 | None:intergenic | 15.0% |
| !! | ATATGTACAGATTATTTACA+AGG | + | chr3.1:84473695-84473714 | None:intergenic | 20.0% |
| !! | ATATTTACAAAGATCATAGA+TGG | - | chr3.1:84473499-84473518 | MS.gene32670:intron | 20.0% |
| !! | ATTAGAAAAAGTTTGACATA+CGG | - | chr3.1:84473936-84473955 | MS.gene32670:CDS | 20.0% |
| !! | ATTATACAAGAAACAAAAAG+AGG | - | chr3.1:84474123-84474142 | MS.gene32670:CDS | 20.0% |
| !! | ATTCAACTGATTATGTTATA+TGG | - | chr3.1:84473348-84473367 | MS.gene32670:intron | 20.0% |
| !! | CATACATTGATATAAAAAGA+TGG | - | chr3.1:84473718-84473737 | MS.gene32670:CDS | 20.0% |
| !! | GACAAATTAAACATTATACA+AGG | - | chr3.1:84473624-84473643 | MS.gene32670:intron | 20.0% |
| !! | TATTTACAAAGATCATAGAT+GGG | - | chr3.1:84473500-84473519 | MS.gene32670:intron | 20.0% |
| !! | TCTCATTATAGTTTAGTAAA+AGG | + | chr3.1:84473553-84473572 | None:intergenic | 20.0% |
| !!! | AATGTTTATTTTTTAAGTGC+TGG | - | chr3.1:84474059-84474078 | MS.gene32670:CDS | 20.0% |
| !!! | ATAATGTTTAATTTGTCGAT+TGG | + | chr3.1:84473621-84473640 | None:intergenic | 20.0% |
| !!! | TAATGTTTAATTTGTCGATT+GGG | + | chr3.1:84473620-84473639 | None:intergenic | 20.0% |
| ! | AAGAATAAGTTATAGTTGCA+TGG | + | chr3.1:84473014-84473033 | None:intergenic | 25.0% |
| ! | AAGATTAACATTTGGACTAA+TGG | - | chr3.1:84474433-84474452 | MS.gene32670:CDS | 25.0% |
| ! | ATAACAAGTATGTTGTATAC+GGG | - | chr3.1:84474023-84474042 | MS.gene32670:CDS | 25.0% |
| ! | CATAACAAGTATGTTGTATA+CGG | - | chr3.1:84474022-84474041 | MS.gene32670:CDS | 25.0% |
| ! | TAATATCTATTGAGACGTTT+AGG | - | chr3.1:84473142-84473161 | MS.gene32670:intron | 25.0% |
| ! | TATTTACAAGGTCTTAACTA+CGG | + | chr3.1:84473683-84473702 | None:intergenic | 25.0% |
| ! | TTAGTCCAAATGTTAATCTT+AGG | + | chr3.1:84474433-84474452 | None:intergenic | 25.0% |
| ! | TTCTAATCGAAACAAAACAT+AGG | + | chr3.1:84473923-84473942 | None:intergenic | 25.0% |
| ! | TTTCAATGTATGTTGTATAC+TGG | - | chr3.1:84473972-84473991 | MS.gene32670:CDS | 25.0% |
| !! | GAGTTGGTTAAATTTGAAAA+GGG | + | chr3.1:84473180-84473199 | None:intergenic | 25.0% |
| !! | GTAAAAGTACACAACTAATT+TGG | + | chr3.1:84473877-84473896 | None:intergenic | 25.0% |
| !! | TTAACAGTATTTTACAACCT+TGG | - | chr3.1:84473434-84473453 | MS.gene32670:intron | 25.0% |
| !! | TTGATTGTTTGTTTCTCAAA+AGG | - | chr3.1:84473586-84473605 | MS.gene32670:intron | 25.0% |
| !!! | AATGTTTAATTTGTCGATTG+GGG | + | chr3.1:84473619-84473638 | None:intergenic | 25.0% |
| !!! | CACTGTAATTACAGTTTTTT+TGG | - | chr3.1:84473102-84473121 | MS.gene32670:intron | 25.0% |
| !!! | TGAGTTGGTTAAATTTGAAA+AGG | + | chr3.1:84473181-84473200 | None:intergenic | 25.0% |
| AAATAAGTTTGGCGTATTTG+AGG | + | chr3.1:84472311-84472330 | None:intergenic | 30.0% | |
| AGCGATAGAAGATTAATTCA+GGG | - | chr3.1:84473239-84473258 | MS.gene32670:intron | 30.0% | |
| AGTTTAGTAAAAGGCAAAGT+AGG | + | chr3.1:84473544-84473563 | None:intergenic | 30.0% | |
| ATCATGAGGTGAAATAAGTT+TGG | + | chr3.1:84472322-84472341 | None:intergenic | 30.0% | |
| ATTAACATTTGGACTAATGG+TGG | - | chr3.1:84474436-84474455 | MS.gene32670:CDS | 30.0% | |
| CAATGCTAATGTTAAGCAAT+TGG | - | chr3.1:84472512-84472531 | MS.gene32670:CDS | 30.0% | |
| GTTCAATATACAATAGTCCT+AGG | - | chr3.1:84473464-84473483 | MS.gene32670:intron | 30.0% | |
| GTTTAGTAAAAGGCAAAGTA+GGG | + | chr3.1:84473543-84473562 | None:intergenic | 30.0% | |
| TAAAACTCGAAAAGAAAGCA+TGG | - | chr3.1:84472139-84472158 | MS.gene32670:CDS | 30.0% | |
| TATATTGAACCAAATCACCA+AGG | + | chr3.1:84473454-84473473 | None:intergenic | 30.0% | |
| TATCTGACTAACTTTCATCA+TGG | - | chr3.1:84473747-84473766 | MS.gene32670:CDS | 30.0% | |
| TTGAGCCTAAGATTAACATT+TGG | - | chr3.1:84474425-84474444 | MS.gene32670:CDS | 30.0% | |
| ! | AGGGATTACTTGATGATAAA+TGG | - | chr3.1:84474352-84474371 | MS.gene32670:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr3.1:84474355-84474374 | MS.gene32670:CDS | 30.0% |
| !! | ATGTTTAATTTGTCGATTGG+GGG | + | chr3.1:84473618-84473637 | None:intergenic | 30.0% |
| !! | ATTTTACAACCTTGGTGATT+TGG | - | chr3.1:84473442-84473461 | MS.gene32670:intron | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+CGG | - | chr3.1:84472477-84472496 | MS.gene32670:CDS | 30.0% |
| !! | TGAAATTGGTTCGAAATTGA+GGG | - | chr3.1:84472638-84472657 | MS.gene32670:intron | 30.0% |
| AAACAACTACACAGCAGTAA+GGG | - | chr3.1:84474333-84474352 | MS.gene32670:CDS | 35.0% | |
| AACGAGTTCATTAACGTGAT+TGG | + | chr3.1:84472352-84472371 | None:intergenic | 35.0% | |
| AACTATAATGAGATCGCAGT+TGG | - | chr3.1:84473560-84473579 | MS.gene32670:intron | 35.0% | |
| AAGTAGCAAGATGCTAATTG+GGG | - | chr3.1:84473649-84473668 | MS.gene32670:intron | 35.0% | |
| ACTATAATGAGATCGCAGTT+GGG | - | chr3.1:84473561-84473580 | MS.gene32670:intron | 35.0% | |
| AGAAGTAGCAAGATGCTAAT+TGG | - | chr3.1:84473647-84473666 | MS.gene32670:intron | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | - | chr3.1:84474150-84474169 | MS.gene32670:CDS | 35.0% | |
| ATCTATTGAGACGTTTAGGT+TGG | - | chr3.1:84473146-84473165 | MS.gene32670:intron | 35.0% | |
| CACGAGTATTTCTCATATCT+GGG | - | chr3.1:84472549-84472568 | MS.gene32670:CDS | 35.0% | |
| GAAAAAGTTTGACATACGGT+AGG | - | chr3.1:84473940-84473959 | MS.gene32670:CDS | 35.0% | |
| GAAGTAGCAAGATGCTAATT+GGG | - | chr3.1:84473648-84473667 | MS.gene32670:intron | 35.0% | |
| GAGCGATAGAAGATTAATTC+AGG | - | chr3.1:84473238-84473257 | MS.gene32670:intron | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | - | chr3.1:84472624-84472643 | MS.gene32670:intron | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | - | chr3.1:84474243-84474262 | MS.gene32670:CDS | 35.0% | |
| GTTGAAATTCTGGATGTTGT+AGG | - | chr3.1:84474081-84474100 | MS.gene32670:CDS | 35.0% | |
| TAGTGTTCAGTATGAAACCA+AGG | - | chr3.1:84472983-84473002 | MS.gene32670:intron | 35.0% | |
| TCACGAGTATTTCTCATATC+TGG | - | chr3.1:84472548-84472567 | MS.gene32670:CDS | 35.0% | |
| TCAGAATATCTTGCGATAAC+TGG | - | chr3.1:84472099-84472118 | MS.gene32670:CDS | 35.0% | |
| TCATGGACAGTCTTAAACAA+AGG | + | chr3.1:84474535-84474554 | None:intergenic | 35.0% | |
| TGCTAATGTTAAGCAATTGG+TGG | - | chr3.1:84472515-84472534 | MS.gene32670:CDS | 35.0% | |
| TTTGACATACGGTAGGTAAA+TGG | - | chr3.1:84473947-84473966 | MS.gene32670:CDS | 35.0% | |
| ! | ACTAATGGTGGTGATAATAG+TGG | - | chr3.1:84474448-84474467 | MS.gene32670:CDS | 35.0% |
| ! | CTAATGGTGGTGATAATAGT+GGG | - | chr3.1:84474449-84474468 | MS.gene32670:CDS | 35.0% |
| ! | GAAGTATTACTCTTGTTGCT+TGG | + | chr3.1:84473074-84473093 | None:intergenic | 35.0% |
| ! | TAATGGTGGTGATAATAGTG+GGG | - | chr3.1:84474450-84474469 | MS.gene32670:CDS | 35.0% |
| ! | TTAAGAGCTTTTGTCAGGTA+AGG | + | chr3.1:84474593-84474612 | None:intergenic | 35.0% |
| !! | AGTTTTTGAGAATCAGAGAG+AGG | - | chr3.1:84472773-84472792 | MS.gene32670:intron | 35.0% |
| !! | GTGAAATTGGTTCGAAATTG+AGG | - | chr3.1:84472637-84472656 | MS.gene32670:intron | 35.0% |
| !! | TTAAGTGCTGGTTGAAATTC+TGG | - | chr3.1:84474071-84474090 | MS.gene32670:CDS | 35.0% |
| AATGACTCATGTCACTGAGT+TGG | + | chr3.1:84473196-84473215 | None:intergenic | 40.0% | |
| AGAAGCAGGGAATTAAAGTG+AGG | - | chr3.1:84472739-84472758 | MS.gene32670:intron | 40.0% | |
| AGCAACTTCTTTCATACCCA+TGG | + | chr3.1:84474491-84474510 | None:intergenic | 40.0% | |
| AGGTCTTAACTACGGATTTG+CGG | + | chr3.1:84473675-84473694 | None:intergenic | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | - | chr3.1:84474310-84474329 | MS.gene32670:CDS | 40.0% | |
| AGTTACAAGGTGAAGTTGAG+AGG | - | chr3.1:84472907-84472926 | MS.gene32670:intron | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | - | chr3.1:84474490-84474509 | MS.gene32670:CDS | 40.0% | |
| CAAAGAAAAAAGAGGCAGAG+GGG | - | chr3.1:84474251-84474270 | MS.gene32670:CDS | 40.0% | |
| CACGTTAATGAACTCGTTCA+AGG | - | chr3.1:84472354-84472373 | MS.gene32670:CDS | 40.0% | |
| CGTATTTGAGGAGACTTTCA+TGG | + | chr3.1:84472299-84472318 | None:intergenic | 40.0% | |
| GAAAATTGATGCAGAGACGA+AGG | - | chr3.1:84472686-84472705 | MS.gene32670:intron | 40.0% | |
| GAAACAACTACACAGCAGTA+AGG | - | chr3.1:84474332-84474351 | MS.gene32670:CDS | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | - | chr3.1:84474390-84474409 | MS.gene32670:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+GGG | - | chr3.1:84474250-84474269 | MS.gene32670:CDS | 40.0% | |
| GTGTCAGAAGCTAAGATGAA+AGG | - | chr3.1:84472615-84472634 | MS.gene32670:intron | 40.0% | |
| GTTCATTAACGTGATTGGAG+TGG | + | chr3.1:84472347-84472366 | None:intergenic | 40.0% | |
| TATGAGAAATACTCGTGACC+AGG | + | chr3.1:84472546-84472565 | None:intergenic | 40.0% | |
| TCGTTCAAGGAATCATCGAA+GGG | - | chr3.1:84472367-84472386 | MS.gene32670:CDS | 40.0% | |
| TGGACAGTCTTAAACAAAGG+TGG | + | chr3.1:84474532-84474551 | None:intergenic | 40.0% | |
| ! | AATAGTGGGGGAATAACTGA+AGG | - | chr3.1:84474463-84474482 | MS.gene32670:CDS | 40.0% |
| ! | AATGGTGGTGATAATAGTGG+GGG | - | chr3.1:84474451-84474470 | MS.gene32670:CDS | 40.0% |
| ! | ACTTCGAAGGTATAGTTCAC+CGG | + | chr3.1:84472204-84472223 | None:intergenic | 40.0% |
| ! | ATAGTTGCATGGACTAACCT+TGG | + | chr3.1:84473003-84473022 | None:intergenic | 40.0% |
| ! | ATTCTGATGCTTTTGCTACC+CGG | + | chr3.1:84472086-84472105 | None:intergenic | 40.0% |
| ! | CATCAATTTTCGCTGCATTC+TGG | + | chr3.1:84472677-84472696 | None:intergenic | 40.0% |
| ! | GTTTGTTTCTCAAAAGGCAG+AGG | - | chr3.1:84473592-84473611 | MS.gene32670:intron | 40.0% |
| ! | TTCTGAGTTGGCTAAGAAGA+AGG | - | chr3.1:84472815-84472834 | MS.gene32670:intron | 40.0% |
| !! | AAGAAAGCATGGATTTTCCC+CGG | - | chr3.1:84472150-84472169 | MS.gene32670:CDS | 40.0% |
| !! | ATTGGTTCGAAATTGAGGGA+AGG | - | chr3.1:84472642-84472661 | MS.gene32670:intron | 40.0% |
| !! | GAGTTTTATGTCCTCGATTC+CGG | + | chr3.1:84472127-84472146 | None:intergenic | 40.0% |
| AAGACTGTCCATGAGCAAAC+AGG | - | chr3.1:84474541-84474560 | MS.gene32670:CDS | 45.0% | |
| AATATGCAGTGCACAGACCT+AGG | + | chr3.1:84473484-84473503 | None:intergenic | 45.0% | |
| ACGAGGACCAATTGTGAAGA+CGG | + | chr3.1:84472268-84472287 | None:intergenic | 45.0% | |
| CGCAAAGAAAAAAGAGGCAG+AGG | - | chr3.1:84474249-84474268 | MS.gene32670:CDS | 45.0% | |
| CGTTCAAGGAATCATCGAAG+GGG | - | chr3.1:84472368-84472387 | MS.gene32670:CDS | 45.0% | |
| CTAAGGGAAGCTGAGTTACA+AGG | - | chr3.1:84472894-84472913 | MS.gene32670:intron | 45.0% | |
| CTCGTTCAAGGAATCATCGA+AGG | - | chr3.1:84472366-84472385 | MS.gene32670:CDS | 45.0% | |
| GAAGGTTATTGCGATGCAGA+GGG | - | chr3.1:84472704-84472723 | MS.gene32670:intron | 45.0% | |
| GAGAACGAAAGGGAGTTTCT+CGG | + | chr3.1:84472241-84472260 | None:intergenic | 45.0% | |
| GCTCATAGCTTGAACTTCGA+AGG | + | chr3.1:84472217-84472236 | None:intergenic | 45.0% | |
| GGCTCAAGCTAATTCTGAGT+TGG | - | chr3.1:84472803-84472822 | MS.gene32670:intron | 45.0% | |
| TATCTTGCGATAACTGGTGC+CGG | - | chr3.1:84472105-84472124 | MS.gene32670:CDS | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr3.1:84474156-84474175 | MS.gene32670:CDS | 45.0% | |
| TGCTAAGATTAATGCCGAGG+CGG | - | chr3.1:84474393-84474412 | MS.gene32670:CDS | 45.0% | |
| ! | CTTTGCGTATAGCTCTGCTT+CGG | + | chr3.1:84474236-84474255 | None:intergenic | 45.0% |
| ! | TGAGTTGGCTAAGAAGAAGG+CGG | - | chr3.1:84472818-84472837 | MS.gene32670:intron | 45.0% |
| !! | AGACGTTTAGGTTGGACTCT+TGG | - | chr3.1:84473154-84473173 | MS.gene32670:intron | 45.0% |
| !! | GGAATAACTGAAGGTGCCAT+GGG | - | chr3.1:84474472-84474491 | MS.gene32670:CDS | 45.0% |
| !!! | AAATTTTTAAAAAAATTTAG+CGG | + | chr3.1:84473416-84473435 | None:intergenic | 5.0% |
| !!! | GATATTTTTTAATATTTTAA+AGG | - | chr3.1:84473261-84473280 | MS.gene32670:intron | 5.0% |
| AAGACCGTGCATGATTGACC+GGG | + | chr3.1:84472171-84472190 | None:intergenic | 50.0% | |
| AGGTATAGTTCACCGGTGAG+AGG | + | chr3.1:84472197-84472216 | None:intergenic | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | - | chr3.1:84474565-84474584 | MS.gene32670:CDS | 50.0% | |
| CAGAGGGGATTGTGACACTT+GGG | - | chr3.1:84474266-84474285 | MS.gene32670:CDS | 50.0% | |
| CGAAGGTTATTGCGATGCAG+AGG | - | chr3.1:84472703-84472722 | MS.gene32670:intron | 50.0% | |
| CTGGATGTTGTAGGTGCAAG+AGG | - | chr3.1:84474090-84474109 | MS.gene32670:CDS | 50.0% | |
| CTTTCATGGTCGTCAACACG+AGG | + | chr3.1:84472285-84472304 | None:intergenic | 50.0% | |
| GAAAACCTCCTCCATGGTCA+TGG | + | chr3.1:84472415-84472434 | None:intergenic | 50.0% | |
| GAAGACCGTGCATGATTGAC+CGG | + | chr3.1:84472172-84472191 | None:intergenic | 50.0% | |
| GACCAATTGTGAAGACGGCA+GGG | + | chr3.1:84472263-84472282 | None:intergenic | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | + | chr3.1:84474552-84474571 | None:intergenic | 50.0% | |
| GCTGGTGAAAGTGAGAAGCA+GGG | - | chr3.1:84472726-84472745 | MS.gene32670:intron | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+AGG | - | chr3.1:84472587-84472606 | MS.gene32670:intron | 50.0% | |
| GTAGGTGCAAGAGGCTAACT+GGG | - | chr3.1:84474099-84474118 | MS.gene32670:CDS | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | - | chr3.1:84474277-84474296 | MS.gene32670:CDS | 50.0% | |
| TGAGAATCAGAGAGAGGCTG+AGG | - | chr3.1:84472779-84472798 | MS.gene32670:intron | 50.0% | |
| TGATTGGAGTGGCGATCATG+AGG | + | chr3.1:84472336-84472355 | None:intergenic | 50.0% | |
| TGTAGGTGCAAGAGGCTAAC+TGG | - | chr3.1:84474098-84474117 | MS.gene32670:CDS | 50.0% | |
| TTTCCCCGGTCAATCATGCA+CGG | - | chr3.1:84472164-84472183 | MS.gene32670:CDS | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | - | chr3.1:84472525-84472544 | MS.gene32670:CDS | 50.0% |
| ! | ACCATGGAGGAGGTTTTCAG+AGG | - | chr3.1:84472417-84472436 | MS.gene32670:CDS | 50.0% |
| ! | GGCAGAAGCGCAAAAAGCAT+TGG | - | chr3.1:84474177-84474196 | MS.gene32670:CDS | 50.0% |
| ! | TCCTCTGAAAACCTCCTCCA+TGG | + | chr3.1:84472421-84472440 | None:intergenic | 50.0% |
| ! | TCTGGGACAAAAGACGCAGA+TGG | - | chr3.1:84472566-84472585 | MS.gene32670:CDS | 50.0% |
| !! | GGGAATAACTGAAGGTGCCA+TGG | - | chr3.1:84474471-84474490 | MS.gene32670:CDS | 50.0% |
| AAGACGGCAGGGAGAACGAA+AGG | + | chr3.1:84472252-84472271 | None:intergenic | 55.0% | |
| AAGGATCCCATCCAAGCAGG+AGG | + | chr3.1:84474574-84474593 | None:intergenic | 55.0% | |
| AGACCGTGCATGATTGACCG+GGG | + | chr3.1:84472170-84472189 | None:intergenic | 55.0% | |
| AGACGGCAGGGAGAACGAAA+GGG | + | chr3.1:84472251-84472270 | None:intergenic | 55.0% | |
| ATTAATGCCGAGGCGGTACG+TGG | - | chr3.1:84474400-84474419 | MS.gene32670:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | - | chr3.1:84474564-84474583 | MS.gene32670:CDS | 55.0% | |
| CTCAGCTTCCCTTAGAGCCA+CGG | + | chr3.1:84472889-84472908 | None:intergenic | 55.0% | |
| CTCCCTGCCGTCTTCACAAT+TGG | - | chr3.1:84472258-84472277 | MS.gene32670:CDS | 55.0% | |
| GAATCAGAGAGAGGCTGAGG+TGG | - | chr3.1:84472782-84472801 | MS.gene32670:intron | 55.0% | |
| GCAGAGGGGATTGTGACACT+TGG | - | chr3.1:84474265-84474284 | MS.gene32670:CDS | 55.0% | |
| GGACCAATTGTGAAGACGGC+AGG | + | chr3.1:84472264-84472283 | None:intergenic | 55.0% | |
| GGCTGGTGAAAGTGAGAAGC+AGG | - | chr3.1:84472725-84472744 | MS.gene32670:intron | 55.0% | |
| GGTAAGGATCCCATCCAAGC+AGG | + | chr3.1:84474577-84474596 | None:intergenic | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | - | chr3.1:84472708-84472727 | MS.gene32670:intron | 55.0% | |
| TGCTTCCATGACCATGGAGG+AGG | - | chr3.1:84472407-84472426 | MS.gene32670:CDS | 55.0% | |
| TGGCTAAGAAGAAGGCGGCT+TGG | - | chr3.1:84472823-84472842 | MS.gene32670:intron | 55.0% | |
| ! | GAAGAAGGCGGCTTGGACTA+AGG | - | chr3.1:84472830-84472849 | MS.gene32670:intron | 55.0% |
| ! | GATAACTGGTGCCGGAATCG+AGG | - | chr3.1:84472113-84472132 | MS.gene32670:CDS | 55.0% |
| !! | GAAGAAGGCCGTGGCTCTAA+GGG | - | chr3.1:84472878-84472897 | MS.gene32670:intron | 55.0% |
| CACGGTCTTCGACCTCTCAC+CGG | - | chr3.1:84472182-84472201 | MS.gene32670:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | - | chr3.1:84474560-84474579 | MS.gene32670:CDS | 60.0% | |
| CCATGGTCATGGAAGCAGCG+AGG | + | chr3.1:84472404-84472423 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCCATGACCA+TGG | - | chr3.1:84472401-84472420 | MS.gene32670:CDS | 60.0% | |
| CGCTGCTTCCATGACCATGG+AGG | - | chr3.1:84472404-84472423 | MS.gene32670:CDS | 60.0% | |
| CTCAAGTCCACGTACCGCCT+CGG | + | chr3.1:84474410-84474429 | None:intergenic | 60.0% | |
| GGCTGAAGTCGAGGCGAAGA+AGG | - | chr3.1:84472863-84472882 | MS.gene32670:intron | 60.0% | |
| TTGGACTAAGGCGGCTCAGG+TGG | - | chr3.1:84472842-84472861 | MS.gene32670:intron | 60.0% | |
| ! | CGAAGAAGGCCGTGGCTCTA+AGG | - | chr3.1:84472877-84472896 | MS.gene32670:intron | 60.0% |
| ! | GAAGGCGGCTTGGACTAAGG+CGG | - | chr3.1:84472833-84472852 | MS.gene32670:intron | 60.0% |
| AGTCGAGGCGAAGAAGGCCG+TGG | - | chr3.1:84472869-84472888 | MS.gene32670:intron | 65.0% | |
| GGCTCAGGTGGCTGAAGTCG+AGG | - | chr3.1:84472854-84472873 | MS.gene32670:intron | 65.0% | |
| GGCTTGGACTAAGGCGGCTC+AGG | - | chr3.1:84472839-84472858 | MS.gene32670:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 84472078 | 84474612 | 84472078 | ID=MS.gene32670 |
| chr3.1 | mRNA | 84472078 | 84474612 | 84472078 | ID=MS.gene32670.t1;Parent=MS.gene32670 |
| chr3.1 | exon | 84473686 | 84474612 | 84473686 | ID=MS.gene32670.t1.exon1;Parent=MS.gene32670.t1 |
| chr3.1 | CDS | 84473686 | 84474612 | 84473686 | ID=cds.MS.gene32670.t1;Parent=MS.gene32670.t1 |
| chr3.1 | exon | 84472078 | 84472587 | 84472078 | ID=MS.gene32670.t1.exon2;Parent=MS.gene32670.t1 |
| chr3.1 | CDS | 84472078 | 84472587 | 84472078 | ID=cds.MS.gene32670.t1;Parent=MS.gene32670.t1 |
| Gene Sequence |
| Protein sequence |
