Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32674.t1 | XP_003603332.1 | 98.1 | 480 | 9 | 0 | 1 | 480 | 1 | 480 | 6.70E-192 | 680.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32674.t1 | D2XNQ9 | 98.1 | 480 | 9 | 0 | 1 | 480 | 1 | 480 | 1.6e-194 | 680.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32674.t1 | G7JAE4 | 98.1 | 480 | 9 | 0 | 1 | 480 | 1 | 480 | 4.9e-192 | 680.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32674.t1 | MTR_3g106420 | 97.500 | 480 | 12 | 0 | 1 | 480 | 1 | 480 | 0.0 | 954 |
| MS.gene32674.t1 | MTR_3g106480 | 93.305 | 478 | 32 | 0 | 3 | 480 | 1 | 478 | 0.0 | 912 |
| MS.gene32674.t1 | MTR_3g106485 | 94.561 | 478 | 22 | 2 | 3 | 480 | 1 | 474 | 0.0 | 887 |
| MS.gene32674.t1 | MTR_1g083190 | 93.542 | 480 | 23 | 1 | 1 | 480 | 1 | 472 | 0.0 | 881 |
| MS.gene32674.t1 | MTR_1g073400 | 91.423 | 478 | 37 | 1 | 3 | 480 | 1 | 474 | 0.0 | 844 |
| MS.gene32674.t1 | MTR_1g115145 | 89.353 | 479 | 44 | 3 | 3 | 480 | 1 | 473 | 0.0 | 844 |
| MS.gene32674.t1 | MTR_1g071130 | 86.192 | 478 | 37 | 2 | 3 | 480 | 1 | 449 | 0.0 | 835 |
| MS.gene32674.t1 | MTR_3g106430 | 91.824 | 477 | 35 | 2 | 3 | 479 | 1 | 473 | 0.0 | 834 |
| MS.gene32674.t1 | MTR_3g106470 | 83.229 | 477 | 24 | 2 | 3 | 479 | 32 | 452 | 0.0 | 756 |
| MS.gene32674.t1 | MTR_8g063830 | 80.645 | 465 | 49 | 5 | 3 | 466 | 1 | 425 | 0.0 | 672 |
| MS.gene32674.t1 | MTR_3g065540 | 64.348 | 115 | 14 | 1 | 42 | 156 | 14 | 101 | 5.35e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32674.t1 | AT5G25260 | 73.996 | 473 | 111 | 2 | 3 | 475 | 1 | 461 | 0.0 | 726 |
| MS.gene32674.t1 | AT5G25250 | 74.207 | 473 | 108 | 2 | 3 | 475 | 1 | 459 | 0.0 | 717 |
| MS.gene32674.t1 | AT5G64870 | 70.551 | 472 | 128 | 1 | 4 | 475 | 3 | 463 | 0.0 | 654 |
Find 119 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAGTATTTCTCATATT+TGG | 0.110239 | 3.1:-84441670 | MS.gene32674:CDS |
| TTGAGCCTAAGATTAGTATT+TGG | 0.251063 | 3.1:-84440044 | MS.gene32674:CDS |
| CAAAGAAGGCCGTGGCTCTA+AGG | 0.288894 | 3.1:-84441341 | MS.gene32674:CDS |
| CATGAGTATTTCTCATATTT+GGG | 0.292202 | 3.1:-84441669 | MS.gene32674:CDS |
| AACAAGTTCATTAACATGAT+TGG | 0.311801 | 3.1:+84441869 | None:intergenic |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 3.1:-84441594 | MS.gene32674:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.347159 | 3.1:-84440117 | MS.gene32674:CDS |
| CATCAAGAATGAAAATTTAC+CGG | 0.347355 | 3.1:-84442154 | None:intergenic |
| CTCCCCGCTGTCTTCACAAT+TGG | 0.348065 | 3.1:-84441960 | MS.gene32674:CDS |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.350630 | 3.1:-84439905 | MS.gene32674:CDS |
| CAACTTGAGTTGAATCAATT+CGG | 0.350972 | 3.1:-84441741 | MS.gene32674:CDS |
| AGAGCTATACACAAAGAAAA+AGG | 0.360858 | 3.1:-84440229 | MS.gene32674:CDS |
| GAAGAAGGCGGCTTGGACTA+AGG | 0.362386 | 3.1:-84441388 | MS.gene32674:CDS |
| TGTAGGTACAAGAAGCAAAC+TGG | 0.375802 | 3.1:-84440371 | MS.gene32674:intron |
| GTGAAATTGGTTCAAAATTG+AGG | 0.384625 | 3.1:-84441581 | MS.gene32674:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.384650 | 3.1:+84440039 | None:intergenic |
| AAGATTAGTATTTGGACTAA+TGG | 0.384982 | 3.1:-84440036 | MS.gene32674:CDS |
| ACTTCGAAGGTATAGTTTAC+CGG | 0.387396 | 3.1:+84442017 | None:intergenic |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 3.1:-84441706 | MS.gene32674:CDS |
| TCAGAATACCTTGTGATAAC+AGG | 0.405430 | 3.1:-84442119 | MS.gene32674:CDS |
| TGGTCCTCGTGTTGACGATC+AGG | 0.407219 | 3.1:-84441940 | MS.gene32674:CDS |
| GGCTTGGACTAAGGCGGCTC+AGG | 0.415815 | 3.1:-84441379 | MS.gene32674:CDS |
| CATGTTAATGAACTTGTTCA+AGG | 0.419850 | 3.1:-84441864 | MS.gene32674:CDS |
| TGGACTAATGGTGGTGATAA+TGG | 0.423773 | 3.1:-84440024 | MS.gene32674:CDS |
| AGCTGGAGAGGGTGAGAAGG+AGG | 0.426976 | 3.1:-84441493 | MS.gene32674:CDS |
| ATCATGCGGTGAAATAAGTT+TGG | 0.432419 | 3.1:+84441899 | None:intergenic |
| TGAAATTGGTTCAAAATTGA+GGG | 0.433449 | 3.1:-84441580 | MS.gene32674:CDS |
| CGGTCAATCCTGCACCGTCT+TGG | 0.457748 | 3.1:-84442048 | MS.gene32674:CDS |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.465328 | 3.1:-84439909 | MS.gene32674:CDS |
| AAGCAATTGGTGGACGTGCC+CGG | 0.467503 | 3.1:-84441693 | MS.gene32674:CDS |
| CAAGACGGTGCAGGATTGAC+CGG | 0.470050 | 3.1:+84442049 | None:intergenic |
| GGGAATAACTGAAGGTGCCA+TGG | 0.487818 | 3.1:-84439998 | MS.gene32674:CDS |
| CTCAAGTCCGCGTACCGCCT+CGG | 0.491620 | 3.1:+84440062 | None:intergenic |
| ATTCTGATGCTTTCGCGACC+CGG | 0.494061 | 3.1:+84442135 | None:intergenic |
| GAGAGCTGGAGAGGGTGAGA+AGG | 0.498051 | 3.1:-84441496 | MS.gene32674:CDS |
| GGACCAATTGTGAAGACAGC+GGG | 0.501529 | 3.1:+84441957 | None:intergenic |
| GAAACGACTACACAGCTGTA+AGG | 0.502820 | 3.1:-84440137 | MS.gene32674:CDS |
| TGCTTCCATGACGATGGAGG+AGG | 0.505459 | 3.1:-84441811 | MS.gene32674:CDS |
| GCAACATGCCTGTCTGCTCA+TGG | 0.507208 | 3.1:+84439920 | None:intergenic |
| GCTGGAGAGGGTGAGAAGGA+GGG | 0.508003 | 3.1:-84441492 | MS.gene32674:CDS |
| GGCTGAAGTCGAGGCAAAGA+AGG | 0.508773 | 3.1:-84441355 | MS.gene32674:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.509643 | 3.1:-84440319 | MS.gene32674:CDS |
| TTGGACTAAGGCGGCTCAGG+TGG | 0.510364 | 3.1:-84441376 | MS.gene32674:CDS |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.519619 | 3.1:-84439904 | MS.gene32674:CDS |
| AAGACAGCGGGGAGAACAAA+AGG | 0.520506 | 3.1:+84441969 | None:intergenic |
| GTTATTGCGATGCAGAGAGC+TGG | 0.520901 | 3.1:-84441510 | MS.gene32674:CDS |
| TGGCTAAGAAGAAGGCGGCT+TGG | 0.522658 | 3.1:-84441395 | MS.gene32674:CDS |
| GAGAACAAAAGGAAGTTTCT+CGG | 0.527868 | 3.1:+84441980 | None:intergenic |
| AAAGAAGGCCGTGGCTCTAA+GGG | 0.531548 | 3.1:-84441340 | MS.gene32674:CDS |
| ATTAGTATTTGGACTAATGG+TGG | 0.532835 | 3.1:-84440033 | MS.gene32674:CDS |
| TTCTGAGTTGGCTAAGAAGA+AGG | 0.532968 | 3.1:-84441403 | MS.gene32674:CDS |
| TAAGTTTGGCGTATTTGAGA+AGG | 0.534048 | 3.1:+84441913 | None:intergenic |
| GGAATAACTGAAGGTGCCAT+GGG | 0.534697 | 3.1:-84439997 | MS.gene32674:CDS |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 3.1:+84439981 | None:intergenic |
| TGAGAGGTCCAAGACGGTGC+AGG | 0.535402 | 3.1:+84442040 | None:intergenic |
| TGCGAATGTTAAGCAATTGG+TGG | 0.535672 | 3.1:-84441703 | MS.gene32674:CDS |
| TGGAAGCAAAGAATCAAGCT+AGG | 0.539726 | 3.1:-84441632 | MS.gene32674:CDS |
| CACCGTCTTGGACCTCTCAC+CGG | 0.539796 | 3.1:-84442036 | MS.gene32674:CDS |
| GGCTCAAGCTAATTCTGAGT+TGG | 0.541784 | 3.1:-84441415 | MS.gene32674:CDS |
| GCGGAGGGAATTGTGACACT+TGG | 0.548836 | 3.1:-84440204 | MS.gene32674:CDS |
| ATATGAGAAATACTCATGAC+CGG | 0.550689 | 3.1:+84441674 | None:intergenic |
| GGTAAGGATCCCATCCAAGC+AGG | 0.550974 | 3.1:+84439895 | None:intergenic |
| GGCTCAGGTGGCTGAAGTCG+AGG | 0.551986 | 3.1:-84441364 | MS.gene32674:CDS |
| TAAAGTGAGGACTGAAGTGA+AGG | 0.556664 | 3.1:-84441466 | MS.gene32674:CDS |
| TAATGGTGGTGATAATGGTG+GGG | 0.564296 | 3.1:-84440019 | MS.gene32674:CDS |
| AAGACTGTCCATGAGCAGAC+AGG | 0.567979 | 3.1:-84439928 | MS.gene32674:CDS |
| ACTCATTGCTTGAACTTCGA+AGG | 0.568460 | 3.1:+84442004 | None:intergenic |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 3.1:-84440159 | MS.gene32674:CDS |
| GAAAACCTCCTCCATCGTCA+TGG | 0.573319 | 3.1:+84441806 | None:intergenic |
| AATGGTGGTGATAATGGTGG+GGG | 0.578110 | 3.1:-84440018 | MS.gene32674:CDS |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 3.1:-84439979 | MS.gene32674:CDS |
| ATTGGTTCAAAATTGAGGGA+AGG | 0.580771 | 3.1:-84441576 | MS.gene32674:CDS |
| TGCGATGCAGAGAGCTGGAG+AGG | 0.580805 | 3.1:-84441505 | MS.gene32674:CDS |
| GTGACACTTGGGAATGCTCA+AGG | 0.583871 | 3.1:-84440192 | MS.gene32674:CDS |
| ATCAAGAATGAAAATTTACC+GGG | 0.586313 | 3.1:-84442153 | None:intergenic |
| AAGACGGTGCAGGATTGACC+GGG | 0.589066 | 3.1:+84442050 | None:intergenic |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 3.1:-84441436 | MS.gene32674:CDS |
| CGCTGCTTCCATGACGATGG+AGG | 0.591242 | 3.1:-84441814 | MS.gene32674:CDS |
| GGCAGAAGCACAGAAAGCAT+CGG | 0.592056 | 3.1:-84440292 | MS.gene32674:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 3.1:-84440313 | MS.gene32674:CDS |
| CGGAGGGAATTGTGACACTT+GGG | 0.601084 | 3.1:-84440203 | MS.gene32674:CDS |
| GCGATGCAGAGAGCTGGAGA+GGG | 0.601209 | 3.1:-84441504 | MS.gene32674:CDS |
| CTTGTTCAAGGAATCATCGA+AGG | 0.603463 | 3.1:-84441852 | MS.gene32674:CDS |
| AGTCGAGGCAAAGAAGGCCG+TGG | 0.604613 | 3.1:-84441349 | MS.gene32674:CDS |
| AGAAGGAGGGAATTAAAGTG+AGG | 0.607130 | 3.1:-84441479 | MS.gene32674:CDS |
| AGGTATAGTTTACCGGTGAG+AGG | 0.607470 | 3.1:+84442024 | None:intergenic |
| GTAGGTACAAGAAGCAAACT+GGG | 0.610546 | 3.1:-84440370 | MS.gene32674:intron |
| ACTAATGGTGGTGATAATGG+TGG | 0.611329 | 3.1:-84440021 | MS.gene32674:CDS |
| AAACGACTACACAGCTGTAA+GGG | 0.612269 | 3.1:-84440136 | MS.gene32674:CDS |
| CTAAGGGAAGCTGAGTTGCA+AGG | 0.613783 | 3.1:-84441324 | MS.gene32674:CDS |
| TTTGGGTCAAAAGACGCAGA+TGG | 0.613836 | 3.1:-84441652 | MS.gene32674:CDS |
| GTGTCAGAAGCTAAGATGAA+AGG | 0.614706 | 3.1:-84441603 | MS.gene32674:CDS |
| CTAATGGTGGTGATAATGGT+GGG | 0.616233 | 3.1:-84440020 | MS.gene32674:CDS |
| TCATGGACAGTCTTAAACAA+AGG | 0.617676 | 3.1:+84439937 | None:intergenic |
| TTGTTCAAGGAATCATCGAA+GGG | 0.619293 | 3.1:-84441851 | MS.gene32674:CDS |
| GGAAGCAAAGAATCAAGCTA+GGG | 0.626751 | 3.1:-84441631 | MS.gene32674:CDS |
| GTTCATTAACATGATTGGAG+TGG | 0.628854 | 3.1:+84441874 | None:intergenic |
| CTCAGCTTCCCTTAGAGCCA+CGG | 0.639524 | 3.1:+84441332 | None:intergenic |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 3.1:-84440079 | MS.gene32674:CDS |
| GCTGTACAAGAAACAGAAAG+AGG | 0.643966 | 3.1:-84440346 | MS.gene32674:CDS |
| ACTCGCTGCTTCCATGACGA+TGG | 0.644314 | 3.1:-84441817 | MS.gene32674:CDS |
| TATGAGAAATACTCATGACC+GGG | 0.646479 | 3.1:+84441675 | None:intergenic |
| TGGACAGTCTTAAACAAAGG+TGG | 0.649112 | 3.1:+84439940 | None:intergenic |
| TAGTGTTCAATATGAAACCA+AGG | 0.651992 | 3.1:-84441235 | MS.gene32674:intron |
| GAAAATTGATGCAGAGACGA+AGG | 0.652587 | 3.1:-84441532 | MS.gene32674:CDS |
| AGTTGCAAGGTGAAGTTGAG+AGG | 0.653383 | 3.1:-84441311 | MS.gene32674:CDS |
| TGAGTTGGCTAAGAAGAAGG+CGG | 0.655618 | 3.1:-84441400 | MS.gene32674:CDS |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 3.1:-84440114 | MS.gene32674:CDS |
| TGCTAAGATTAATGCCGAGG+CGG | 0.661554 | 3.1:-84440076 | MS.gene32674:CDS |
| TACCGGTGAGAGGTCCAAGA+CGG | 0.667806 | 3.1:+84442034 | None:intergenic |
| AAGGATCCCATCCAAGCAGG+AGG | 0.669932 | 3.1:+84439898 | None:intergenic |
| TGAAAATACCTGTTATCACA+AGG | 0.669974 | 3.1:+84442111 | None:intergenic |
| ATTAATGCCGAGGCGGTACG+CGG | 0.680968 | 3.1:-84440069 | MS.gene32674:CDS |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 3.1:+84441936 | None:intergenic |
| TGATTGGAGTGGCGATCATG+CGG | 0.696244 | 3.1:+84441885 | None:intergenic |
| TGTTCAAGGAATCATCGAAG+GGG | 0.705776 | 3.1:-84441850 | MS.gene32674:CDS |
| GACCAATTGTGAAGACAGCG+GGG | 0.714278 | 3.1:+84441958 | None:intergenic |
| AGGACCAATTGTGAAGACAG+CGG | 0.726189 | 3.1:+84441956 | None:intergenic |
| GAAGGCGGCTTGGACTAAGG+CGG | 0.753883 | 3.1:-84441385 | MS.gene32674:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATATAATTAATCATG+TGG | - | chr3.1:84441445-84441464 | MS.gene32674:CDS | 10.0% |
| !! | TTAATTGTATAATAATTCAT+AGG | + | chr3.1:84441356-84441375 | None:intergenic | 10.0% |
| !! | ATATCTTAAAGACTAATAAA+AGG | - | chr3.1:84440977-84440996 | MS.gene32674:intron | 15.0% |
| !! | TATTATTATGACATTATAGT+TGG | - | chr3.1:84441223-84441242 | MS.gene32674:intron | 15.0% |
| !!! | ATTACTGTAATTTAAGTTTT+TGG | - | chr3.1:84440919-84440938 | MS.gene32674:intron | 15.0% |
| !!! | TGATTATTGATTATGTTATA+TGG | - | chr3.1:84441060-84441079 | MS.gene32674:intron | 15.0% |
| !! | AGTGAATTATAATTTCATGA+TGG | - | chr3.1:84441384-84441403 | MS.gene32674:CDS | 20.0% |
| !! | GTAATTTGAATTGAAGAATA+TGG | - | chr3.1:84441471-84441490 | MS.gene32674:CDS | 20.0% |
| !! | TAACACTAATTACATTCTAA+TGG | - | chr3.1:84440953-84440972 | MS.gene32674:intron | 20.0% |
| !! | TCATAATAATAGTGTAACAA+AGG | + | chr3.1:84441214-84441233 | None:intergenic | 20.0% |
| !! | TGAAGTTATTTATATTTCCA+TGG | + | chr3.1:84440826-84440845 | None:intergenic | 20.0% |
| !! | TTCATAGGTAATATTAACTA+TGG | + | chr3.1:84441341-84441360 | None:intergenic | 20.0% |
| !!! | AATATTTACCTTTTAAGTGT+TGG | - | chr3.1:84441573-84441592 | MS.gene32674:CDS | 20.0% |
| !!! | TTTTTTGGTCATTAAAACTT+TGG | - | chr3.1:84441621-84441640 | MS.gene32674:CDS | 20.0% |
| ! | AACAAGTTCATTAACATGAT+TGG | + | chr3.1:84440159-84440178 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | - | chr3.1:84441989-84442008 | MS.gene32674:CDS | 25.0% |
| ! | ATAAATCAATAGCTGTTGAT+AGG | - | chr3.1:84440889-84440908 | MS.gene32674:intron | 25.0% |
| ! | CATGAGTATTTCTCATATTT+GGG | - | chr3.1:84440356-84440375 | MS.gene32674:CDS | 25.0% |
| ! | TATAATAGCCAACACTTAAA+AGG | + | chr3.1:84441584-84441603 | None:intergenic | 25.0% |
| ! | TCATGAGTATTTCTCATATT+TGG | - | chr3.1:84440355-84440374 | MS.gene32674:CDS | 25.0% |
| ! | TGGCTATTATATAACTATAC+TGG | - | chr3.1:84441593-84441612 | MS.gene32674:CDS | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | + | chr3.1:84441989-84442008 | None:intergenic | 25.0% |
| !! | TGAAATTGGTTCAAAATTGA+GGG | - | chr3.1:84440445-84440464 | MS.gene32674:intron | 25.0% |
| !!! | ACTATACTGGATTACTTTTT+TGG | - | chr3.1:84441606-84441625 | MS.gene32674:CDS | 25.0% |
| !!! | CATGAGTATTGAAAATTCAA+TGG | - | chr3.1:84441178-84441197 | MS.gene32674:intron | 25.0% |
| AAACAAGCTGAAAAGTGAAA+AGG | + | chr3.1:84441512-84441531 | None:intergenic | 30.0% | |
| AATTACTGGGAAACAATCAA+AGG | + | chr3.1:84441303-84441322 | None:intergenic | 30.0% | |
| AGAGCTATACACAAAGAAAA+AGG | - | chr3.1:84441796-84441815 | MS.gene32674:CDS | 30.0% | |
| ATATGAGAAATACTCATGAC+CGG | + | chr3.1:84440354-84440373 | None:intergenic | 30.0% | |
| ATTAGTATTTGGACTAATGG+TGG | - | chr3.1:84441992-84442011 | MS.gene32674:CDS | 30.0% | |
| TAGTGTTCAATATGAAACCA+AGG | - | chr3.1:84440790-84440809 | MS.gene32674:intron | 30.0% | |
| TCAAACTCAAAAAGAAAGCA+TGG | - | chr3.1:84439946-84439965 | MS.gene32674:CDS | 30.0% | |
| TGAAAATACCTGTTATCACA+AGG | + | chr3.1:84439917-84439936 | None:intergenic | 30.0% | |
| TGTAATTAGTGTTATCACAG+AGG | + | chr3.1:84440947-84440966 | None:intergenic | 30.0% | |
| TTGAGCCTAAGATTAGTATT+TGG | - | chr3.1:84441981-84442000 | MS.gene32674:CDS | 30.0% | |
| TTGGTCATTAAAACTTTGGA+TGG | - | chr3.1:84441625-84441644 | MS.gene32674:CDS | 30.0% | |
| ! | AAAAGGATAGAGAACTTTTG+AGG | - | chr3.1:84440994-84441013 | MS.gene32674:intron | 30.0% |
| ! | AGGGATTACTTGATGATAAA+TGG | - | chr3.1:84441908-84441927 | MS.gene32674:CDS | 30.0% |
| ! | CATGTTAATGAACTTGTTCA+AGG | - | chr3.1:84440161-84440180 | MS.gene32674:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr3.1:84441911-84441930 | MS.gene32674:CDS | 30.0% |
| ! | GTGAAATTGGTTCAAAATTG+AGG | - | chr3.1:84440444-84440463 | MS.gene32674:intron | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+CGG | - | chr3.1:84440284-84440303 | MS.gene32674:CDS | 30.0% |
| AAGCTGAAAAGTGAAAAGGT+TGG | + | chr3.1:84441508-84441527 | None:intergenic | 35.0% | |
| ACTTTGGATGGTGTATATGT+AGG | - | chr3.1:84441637-84441656 | MS.gene32674:CDS | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | - | chr3.1:84441706-84441725 | MS.gene32674:CDS | 35.0% | |
| ATACACAAAGAAAAAGGAGG+CGG | - | chr3.1:84441802-84441821 | MS.gene32674:CDS | 35.0% | |
| ATCATGCGGTGAAATAAGTT+TGG | + | chr3.1:84440129-84440148 | None:intergenic | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | - | chr3.1:84440319-84440338 | MS.gene32674:CDS | 35.0% | |
| GAGAACAAAAGGAAGTTTCT+CGG | + | chr3.1:84440048-84440067 | None:intergenic | 35.0% | |
| GATTGTTTCCCAGTAATTGA+TGG | - | chr3.1:84441305-84441324 | MS.gene32674:CDS | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | - | chr3.1:84440431-84440450 | MS.gene32674:intron | 35.0% | |
| GCTATACACAAAGAAAAAGG+AGG | - | chr3.1:84441799-84441818 | MS.gene32674:CDS | 35.0% | |
| GTTCATTAACATGATTGGAG+TGG | + | chr3.1:84440154-84440173 | None:intergenic | 35.0% | |
| TAAGTTTGGCGTATTTGAGA+AGG | + | chr3.1:84440115-84440134 | None:intergenic | 35.0% | |
| TAGTGTAACAAAGGTTAAGC+AGG | + | chr3.1:84441205-84441224 | None:intergenic | 35.0% | |
| TATGAGAAATACTCATGACC+GGG | + | chr3.1:84440353-84440372 | None:intergenic | 35.0% | |
| TCAGAATACCTTGTGATAAC+AGG | - | chr3.1:84439906-84439925 | MS.gene32674:CDS | 35.0% | |
| TCATGGACAGTCTTAAACAA+AGG | + | chr3.1:84442091-84442110 | None:intergenic | 35.0% | |
| TTGTTCAAGGAATCATCGAA+GGG | - | chr3.1:84440174-84440193 | MS.gene32674:CDS | 35.0% | |
| ! | ACTTCGAAGGTATAGTTTAC+CGG | + | chr3.1:84440011-84440030 | None:intergenic | 35.0% |
| ! | ATTGGTTCAAAATTGAGGGA+AGG | - | chr3.1:84440449-84440468 | MS.gene32674:intron | 35.0% |
| ! | TTAAGAGCTTTTGTCAGGTA+AGG | + | chr3.1:84442149-84442168 | None:intergenic | 35.0% |
| !! | AAGAAAGCATGGATTTTTCC+CGG | - | chr3.1:84439957-84439976 | MS.gene32674:CDS | 35.0% |
| !! | GACTTTTGGGAAACAATCAA+TGG | + | chr3.1:84441249-84441268 | None:intergenic | 35.0% |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | - | chr3.1:84440580-84440599 | MS.gene32674:intron | 35.0% |
| AAACGACTACACAGCTGTAA+GGG | - | chr3.1:84441889-84441908 | MS.gene32674:CDS | 40.0% | |
| ACTCATTGCTTGAACTTCGA+AGG | + | chr3.1:84440024-84440043 | None:intergenic | 40.0% | |
| AGAAGGAGGGAATTAAAGTG+AGG | - | chr3.1:84440546-84440565 | MS.gene32674:intron | 40.0% | |
| AGCAACTTCTTTCATACCCA+TGG | + | chr3.1:84442047-84442066 | None:intergenic | 40.0% | |
| AGGCCAACTTCTCAATGTAT+CGG | + | chr3.1:84441283-84441302 | None:intergenic | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | - | chr3.1:84441866-84441885 | MS.gene32674:CDS | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | - | chr3.1:84442046-84442065 | MS.gene32674:CDS | 40.0% | |
| ATTCCAGCACCATCAATTAC+TGG | + | chr3.1:84441317-84441336 | None:intergenic | 40.0% | |
| CTTGTTCAAGGAATCATCGA+AGG | - | chr3.1:84440173-84440192 | MS.gene32674:CDS | 40.0% | |
| GAAAATTGATGCAGAGACGA+AGG | - | chr3.1:84440493-84440512 | MS.gene32674:intron | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | - | chr3.1:84441946-84441965 | MS.gene32674:CDS | 40.0% | |
| GATTGTTTCCCAAAAGTCAG+AGG | - | chr3.1:84441251-84441270 | MS.gene32674:CDS | 40.0% | |
| GCTGTACAAGAAACAGAAAG+AGG | - | chr3.1:84441679-84441698 | MS.gene32674:CDS | 40.0% | |
| GGAAGCAAAGAATCAAGCTA+GGG | - | chr3.1:84440394-84440413 | MS.gene32674:intron | 40.0% | |
| GTAGGTACAAGAAGCAAACT+GGG | - | chr3.1:84441655-84441674 | MS.gene32674:CDS | 40.0% | |
| GTGTCAGAAGCTAAGATGAA+AGG | - | chr3.1:84440422-84440441 | MS.gene32674:intron | 40.0% | |
| TAAAGTGAGGACTGAAGTGA+AGG | - | chr3.1:84440559-84440578 | MS.gene32674:intron | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | - | chr3.1:84440322-84440341 | MS.gene32674:CDS | 40.0% | |
| TGGAAGCAAAGAATCAAGCT+AGG | - | chr3.1:84440393-84440412 | MS.gene32674:intron | 40.0% | |
| TGGACAGTCTTAAACAAAGG+TGG | + | chr3.1:84442088-84442107 | None:intergenic | 40.0% | |
| TGTAGGTACAAGAAGCAAAC+TGG | - | chr3.1:84441654-84441673 | MS.gene32674:CDS | 40.0% | |
| TGTTCAAGGAATCATCGAAG+GGG | - | chr3.1:84440175-84440194 | MS.gene32674:CDS | 40.0% | |
| TTCCAGCACCATCAATTACT+GGG | + | chr3.1:84441316-84441335 | None:intergenic | 40.0% | |
| TTGCCGATACATTGAGAAGT+TGG | - | chr3.1:84441277-84441296 | MS.gene32674:CDS | 40.0% | |
| ! | AACTTCTCAATGTATCGGCA+AGG | + | chr3.1:84441278-84441297 | None:intergenic | 40.0% |
| ! | ACTTCTCAATGTATCGGCAA+GGG | + | chr3.1:84441277-84441296 | None:intergenic | 40.0% |
| ! | TCCATGGACTAAACTAACCT+TGG | + | chr3.1:84440810-84440829 | None:intergenic | 40.0% |
| ! | TGGACTAATGGTGGTGATAA+TGG | - | chr3.1:84442001-84442020 | MS.gene32674:CDS | 40.0% |
| ! | TTCTGAGTTGGCTAAGAAGA+AGG | - | chr3.1:84440622-84440641 | MS.gene32674:intron | 40.0% |
| !! | ACCAAGGTTAGTTTAGTCCA+TGG | - | chr3.1:84440806-84440825 | MS.gene32674:intron | 40.0% |
| !! | ACTAATGGTGGTGATAATGG+TGG | - | chr3.1:84442004-84442023 | MS.gene32674:CDS | 40.0% |
| !! | CTAATGGTGGTGATAATGGT+GGG | - | chr3.1:84442005-84442024 | MS.gene32674:CDS | 40.0% |
| !! | TAATGGTGGTGATAATGGTG+GGG | - | chr3.1:84442006-84442025 | MS.gene32674:CDS | 40.0% |
| ACAAAGAAAAAGGAGGCGGA+GGG | - | chr3.1:84441806-84441825 | MS.gene32674:CDS | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | + | chr3.1:84440072-84440091 | None:intergenic | 45.0% | |
| AGGTATAGTTTACCGGTGAG+AGG | + | chr3.1:84440004-84440023 | None:intergenic | 45.0% | |
| AGTTGCAAGGTGAAGTTGAG+AGG | - | chr3.1:84440714-84440733 | MS.gene32674:intron | 45.0% | |
| GAAACGACTACACAGCTGTA+AGG | - | chr3.1:84441888-84441907 | MS.gene32674:CDS | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | - | chr3.1:84440589-84440608 | MS.gene32674:intron | 45.0% | |
| GGCTCAAGCTAATTCTGAGT+TGG | - | chr3.1:84440610-84440629 | MS.gene32674:intron | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr3.1:84441712-84441731 | MS.gene32674:CDS | 45.0% | |
| TGCTAAGATTAATGCCGAGG+CGG | - | chr3.1:84441949-84441968 | MS.gene32674:CDS | 45.0% | |
| TTTGGGTCAAAAGACGCAGA+TGG | - | chr3.1:84440373-84440392 | MS.gene32674:intron | 45.0% | |
| ! | AATGGTGGGGGAATAACTGA+AGG | - | chr3.1:84442019-84442038 | MS.gene32674:CDS | 45.0% |
| ! | TGAGTTGGCTAAGAAGAAGG+CGG | - | chr3.1:84440625-84440644 | MS.gene32674:intron | 45.0% |
| !! | AATGGTGGTGATAATGGTGG+GGG | - | chr3.1:84442007-84442026 | MS.gene32674:CDS | 45.0% |
| !! | GGAATAACTGAAGGTGCCAT+GGG | - | chr3.1:84442028-84442047 | MS.gene32674:CDS | 45.0% |
| !! | TTCCCAGTAATTGATGGTGC+TGG | - | chr3.1:84441311-84441330 | MS.gene32674:CDS | 45.0% |
| AAGACAGCGGGGAGAACAAA+AGG | + | chr3.1:84440059-84440078 | None:intergenic | 50.0% | |
| AAGACTGTCCATGAGCAGAC+AGG | - | chr3.1:84442097-84442116 | MS.gene32674:CDS | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | - | chr3.1:84442121-84442140 | MS.gene32674:CDS | 50.0% | |
| ATTCTGATGCTTTCGCGACC+CGG | + | chr3.1:84439893-84439912 | None:intergenic | 50.0% | |
| CACAAAGAAAAAGGAGGCGG+AGG | - | chr3.1:84441805-84441824 | MS.gene32674:CDS | 50.0% | |
| CGGAGGGAATTGTGACACTT+GGG | - | chr3.1:84441822-84441841 | MS.gene32674:CDS | 50.0% | |
| CTAAGGGAAGCTGAGTTGCA+AGG | - | chr3.1:84440701-84440720 | MS.gene32674:intron | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | + | chr3.1:84440092-84440111 | None:intergenic | 50.0% | |
| GAAAACCTCCTCCATCGTCA+TGG | + | chr3.1:84440222-84440241 | None:intergenic | 50.0% | |
| GACCAATTGTGAAGACAGCG+GGG | + | chr3.1:84440070-84440089 | None:intergenic | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | + | chr3.1:84440071-84440090 | None:intergenic | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | - | chr3.1:84441833-84441852 | MS.gene32674:CDS | 50.0% | |
| GTTATTGCGATGCAGAGAGC+TGG | - | chr3.1:84440515-84440534 | MS.gene32674:intron | 50.0% | |
| TGATTGGAGTGGCGATCATG+CGG | + | chr3.1:84440143-84440162 | None:intergenic | 50.0% | |
| ! | ACGATGGAGGAGGTTTTCAG+AGG | - | chr3.1:84440224-84440243 | MS.gene32674:CDS | 50.0% |
| ! | GGCAGAAGCACAGAAAGCAT+CGG | - | chr3.1:84441733-84441752 | MS.gene32674:CDS | 50.0% |
| !! | AAAGAAGGCCGTGGCTCTAA+GGG | - | chr3.1:84440685-84440704 | MS.gene32674:intron | 50.0% |
| !! | GGGAATAACTGAAGGTGCCA+TGG | - | chr3.1:84442027-84442046 | MS.gene32674:CDS | 50.0% |
| AAGACGGTGCAGGATTGACC+GGG | + | chr3.1:84439978-84439997 | None:intergenic | 55.0% | |
| AAGGATCCCATCCAAGCAGG+AGG | + | chr3.1:84442130-84442149 | None:intergenic | 55.0% | |
| ACTCGCTGCTTCCATGACGA+TGG | - | chr3.1:84440208-84440227 | MS.gene32674:CDS | 55.0% | |
| ATTAATGCCGAGGCGGTACG+CGG | - | chr3.1:84441956-84441975 | MS.gene32674:CDS | 55.0% | |
| CAAGACGGTGCAGGATTGAC+CGG | + | chr3.1:84439979-84439998 | None:intergenic | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | - | chr3.1:84442120-84442139 | MS.gene32674:CDS | 55.0% | |
| CTCAGCTTCCCTTAGAGCCA+CGG | + | chr3.1:84440696-84440715 | None:intergenic | 55.0% | |
| CTCCCCGCTGTCTTCACAAT+TGG | - | chr3.1:84440065-84440084 | MS.gene32674:CDS | 55.0% | |
| GCAACATGCCTGTCTGCTCA+TGG | + | chr3.1:84442108-84442127 | None:intergenic | 55.0% | |
| GCGGAGGGAATTGTGACACT+TGG | - | chr3.1:84441821-84441840 | MS.gene32674:CDS | 55.0% | |
| GGCTGAAGTCGAGGCAAAGA+AGG | - | chr3.1:84440670-84440689 | MS.gene32674:intron | 55.0% | |
| GGTAAGGATCCCATCCAAGC+AGG | + | chr3.1:84442133-84442152 | None:intergenic | 55.0% | |
| TACCGGTGAGAGGTCCAAGA+CGG | + | chr3.1:84439994-84440013 | None:intergenic | 55.0% | |
| TGCTTCCATGACGATGGAGG+AGG | - | chr3.1:84440214-84440233 | MS.gene32674:CDS | 55.0% | |
| TGGCTAAGAAGAAGGCGGCT+TGG | - | chr3.1:84440630-84440649 | MS.gene32674:intron | 55.0% | |
| ! | AAGCAATTGGTGGACGTGCC+CGG | - | chr3.1:84440332-84440351 | MS.gene32674:CDS | 55.0% |
| ! | CAAAGAAGGCCGTGGCTCTA+AGG | - | chr3.1:84440684-84440703 | MS.gene32674:intron | 55.0% |
| ! | GAAGAAGGCGGCTTGGACTA+AGG | - | chr3.1:84440637-84440656 | MS.gene32674:intron | 55.0% |
| ! | GGCAAGGGCCTCTGACTTTT+GGG | + | chr3.1:84441262-84441281 | None:intergenic | 55.0% |
| ! | TGGTCCTCGTGTTGACGATC+AGG | - | chr3.1:84440085-84440104 | MS.gene32674:CDS | 55.0% |
| AGCTGGAGAGGGTGAGAAGG+AGG | - | chr3.1:84440532-84440551 | MS.gene32674:intron | 60.0% | |
| AGTCGAGGCAAAGAAGGCCG+TGG | - | chr3.1:84440676-84440695 | MS.gene32674:intron | 60.0% | |
| CACCGTCTTGGACCTCTCAC+CGG | - | chr3.1:84439989-84440008 | MS.gene32674:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | - | chr3.1:84442116-84442135 | MS.gene32674:CDS | 60.0% | |
| CGCTGCTTCCATGACGATGG+AGG | - | chr3.1:84440211-84440230 | MS.gene32674:CDS | 60.0% | |
| CGGTCAATCCTGCACCGTCT+TGG | - | chr3.1:84439977-84439996 | MS.gene32674:CDS | 60.0% | |
| GAGAGCTGGAGAGGGTGAGA+AGG | - | chr3.1:84440529-84440548 | MS.gene32674:intron | 60.0% | |
| GCGATGCAGAGAGCTGGAGA+GGG | - | chr3.1:84440521-84440540 | MS.gene32674:intron | 60.0% | |
| GCTGGAGAGGGTGAGAAGGA+GGG | - | chr3.1:84440533-84440552 | MS.gene32674:intron | 60.0% | |
| TGAGAGGTCCAAGACGGTGC+AGG | + | chr3.1:84439988-84440007 | None:intergenic | 60.0% | |
| TGCGATGCAGAGAGCTGGAG+AGG | - | chr3.1:84440520-84440539 | MS.gene32674:intron | 60.0% | |
| TTGGACTAAGGCGGCTCAGG+TGG | - | chr3.1:84440649-84440668 | MS.gene32674:intron | 60.0% | |
| ! | CGGCAAGGGCCTCTGACTTT+TGG | + | chr3.1:84441263-84441282 | None:intergenic | 60.0% |
| ! | GAAGGCGGCTTGGACTAAGG+CGG | - | chr3.1:84440640-84440659 | MS.gene32674:intron | 60.0% |
| CTCAAGTCCGCGTACCGCCT+CGG | + | chr3.1:84441966-84441985 | None:intergenic | 65.0% | |
| GGCTCAGGTGGCTGAAGTCG+AGG | - | chr3.1:84440661-84440680 | MS.gene32674:intron | 65.0% | |
| GGCTTGGACTAAGGCGGCTC+AGG | - | chr3.1:84440646-84440665 | MS.gene32674:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 84439879 | 84442168 | 84439879 | ID=MS.gene32674 |
| chr3.1 | mRNA | 84439879 | 84442168 | 84439879 | ID=MS.gene32674.t1;Parent=MS.gene32674 |
| chr3.1 | exon | 84441236 | 84442168 | 84441236 | ID=MS.gene32674.t1.exon1;Parent=MS.gene32674.t1 |
| chr3.1 | CDS | 84441236 | 84442168 | 84441236 | ID=cds.MS.gene32674.t1;Parent=MS.gene32674.t1 |
| chr3.1 | exon | 84439879 | 84440388 | 84439879 | ID=MS.gene32674.t1.exon2;Parent=MS.gene32674.t1 |
| chr3.1 | CDS | 84439879 | 84440388 | 84439879 | ID=cds.MS.gene32674.t1;Parent=MS.gene32674.t1 |
| Gene Sequence |
| Protein sequence |
