Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014874.t1 | XP_003603332.1 | 91 | 480 | 43 | 0 | 1 | 480 | 1 | 480 | 4.30E-170 | 607.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014874.t1 | D2XNQ9 | 91.0 | 480 | 43 | 0 | 1 | 480 | 1 | 480 | 1.0e-172 | 607.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014874.t1 | G7JAE4 | 91.0 | 480 | 43 | 0 | 1 | 480 | 1 | 480 | 3.1e-170 | 607.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014874.t1 | MTR_3g106420 | 97.292 | 480 | 13 | 0 | 1 | 480 | 1 | 480 | 0.0 | 951 |
| MS.gene014874.t1 | MTR_3g106480 | 93.096 | 478 | 33 | 0 | 3 | 480 | 1 | 478 | 0.0 | 910 |
| MS.gene014874.t1 | MTR_3g106485 | 94.351 | 478 | 23 | 2 | 3 | 480 | 1 | 474 | 0.0 | 885 |
| MS.gene014874.t1 | MTR_1g083190 | 93.333 | 480 | 24 | 1 | 1 | 480 | 1 | 472 | 0.0 | 879 |
| MS.gene014874.t1 | MTR_1g115145 | 89.353 | 479 | 44 | 3 | 3 | 480 | 1 | 473 | 0.0 | 843 |
| MS.gene014874.t1 | MTR_1g073400 | 91.213 | 478 | 38 | 1 | 3 | 480 | 1 | 474 | 0.0 | 842 |
| MS.gene014874.t1 | MTR_1g071130 | 85.983 | 478 | 38 | 2 | 3 | 480 | 1 | 449 | 0.0 | 833 |
| MS.gene014874.t1 | MTR_3g106430 | 91.614 | 477 | 36 | 2 | 3 | 479 | 1 | 473 | 0.0 | 831 |
| MS.gene014874.t1 | MTR_3g106470 | 83.019 | 477 | 25 | 2 | 3 | 479 | 32 | 452 | 0.0 | 754 |
| MS.gene014874.t1 | MTR_8g063830 | 80.430 | 465 | 50 | 5 | 3 | 466 | 1 | 425 | 0.0 | 670 |
| MS.gene014874.t1 | MTR_3g065540 | 64.348 | 115 | 14 | 1 | 42 | 156 | 14 | 101 | 5.46e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014874.t1 | AT5G25260 | 73.996 | 473 | 111 | 2 | 3 | 475 | 1 | 461 | 0.0 | 728 |
| MS.gene014874.t1 | AT5G25250 | 74.207 | 473 | 108 | 2 | 3 | 475 | 1 | 459 | 0.0 | 719 |
| MS.gene014874.t1 | AT5G64870 | 70.551 | 472 | 128 | 1 | 4 | 475 | 3 | 463 | 0.0 | 655 |
Find 120 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAGTATTTCTCATATT+TGG | 0.110239 | 3.3:-87383437 | MS.gene014874:CDS |
| TTGAGCCTAAGATTAGTATT+TGG | 0.251063 | 3.3:-87381811 | MS.gene014874:CDS |
| CATGAGTATTTCTCATATTT+GGG | 0.292202 | 3.3:-87383436 | MS.gene014874:CDS |
| AACAAGTTCATTAACATGAT+TGG | 0.311801 | 3.3:+87383636 | None:intergenic |
| CGAAGAAGGCTGTGGCTCTA+AGG | 0.317541 | 3.3:-87383108 | MS.gene014874:CDS |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 3.3:-87383361 | MS.gene014874:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.347159 | 3.3:-87381884 | MS.gene014874:CDS |
| CATCAAGAATGAAAATTTAC+CGG | 0.347355 | 3.3:-87383921 | None:intergenic |
| CTCCCCGCTGTCTTCACAAT+TGG | 0.348065 | 3.3:-87383727 | MS.gene014874:CDS |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.350630 | 3.3:-87381672 | MS.gene014874:CDS |
| CAACTTGAGTTGAATCAATT+CGG | 0.350972 | 3.3:-87383508 | MS.gene014874:CDS |
| AGAGCTATACACAAAGAAAA+AGG | 0.360858 | 3.3:-87381996 | MS.gene014874:CDS |
| TGTAGGTACAAGAAGCAAAC+TGG | 0.375802 | 3.3:-87382138 | MS.gene014874:intron |
| GTGAAATTGGTTCAAAATTG+AGG | 0.384625 | 3.3:-87383348 | MS.gene014874:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.384650 | 3.3:+87381806 | None:intergenic |
| AAGATTAGTATTTGGACTAA+TGG | 0.384982 | 3.3:-87381803 | MS.gene014874:CDS |
| ACTTCGAAGGTATAGTTTAC+CGG | 0.387396 | 3.3:+87383784 | None:intergenic |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 3.3:-87383473 | MS.gene014874:CDS |
| TCAGAATACCTTGTGATAAC+AGG | 0.405430 | 3.3:-87383886 | MS.gene014874:CDS |
| TGGTCCTCGTGTTGACGATC+AGG | 0.407219 | 3.3:-87383707 | MS.gene014874:CDS |
| GGCTTGGACCAAGGCGGCTC+AGG | 0.413477 | 3.3:-87383146 | MS.gene014874:CDS |
| CATGTTAATGAACTTGTTCA+AGG | 0.419850 | 3.3:-87383631 | MS.gene014874:CDS |
| TGGACTAATGGTGGTGATAA+TGG | 0.423773 | 3.3:-87381791 | MS.gene014874:CDS |
| AGCTGGAGAGGGTGAGAAGG+AGG | 0.426976 | 3.3:-87383260 | MS.gene014874:CDS |
| TTCAGCCACCTGAGCCGCCT+TGG | 0.429757 | 3.3:+87383138 | None:intergenic |
| ATCATGCGGTGAAATAAGTT+TGG | 0.432419 | 3.3:+87383666 | None:intergenic |
| TGAAATTGGTTCAAAATTGA+GGG | 0.433449 | 3.3:-87383347 | MS.gene014874:CDS |
| CGGTCAATCCTGCACCGTCT+TGG | 0.457748 | 3.3:-87383815 | MS.gene014874:CDS |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.465328 | 3.3:-87381676 | MS.gene014874:CDS |
| AAGCAATTGGTGGACGTGCC+CGG | 0.467503 | 3.3:-87383460 | MS.gene014874:CDS |
| CAAGACGGTGCAGGATTGAC+CGG | 0.470050 | 3.3:+87383816 | None:intergenic |
| GGCTGAAGTTGAGGCGAAGA+AGG | 0.470534 | 3.3:-87383122 | MS.gene014874:CDS |
| TTGGACCAAGGCGGCTCAGG+TGG | 0.476684 | 3.3:-87383143 | MS.gene014874:CDS |
| GGGAATAACTGAAGGTGCCA+TGG | 0.487818 | 3.3:-87381765 | MS.gene014874:CDS |
| CTCAAGTCCGCGTACCGCCT+CGG | 0.491620 | 3.3:+87381829 | None:intergenic |
| ATTCTGATGCTTTCGCGACC+CGG | 0.494061 | 3.3:+87383902 | None:intergenic |
| GAGAGCTGGAGAGGGTGAGA+AGG | 0.498051 | 3.3:-87383263 | MS.gene014874:CDS |
| GGACCAATTGTGAAGACAGC+GGG | 0.501529 | 3.3:+87383724 | None:intergenic |
| GAAACGACTACACAGCTGTA+AGG | 0.502820 | 3.3:-87381904 | MS.gene014874:CDS |
| TGCTTCCATGACGATGGAGG+AGG | 0.505459 | 3.3:-87383578 | MS.gene014874:CDS |
| GCAACATGCCTGTCTGCTCA+TGG | 0.507208 | 3.3:+87381687 | None:intergenic |
| GCTGGAGAGGGTGAGAAGGA+GGG | 0.508003 | 3.3:-87383259 | MS.gene014874:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.509643 | 3.3:-87382086 | MS.gene014874:CDS |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.519619 | 3.3:-87381671 | MS.gene014874:CDS |
| AAGACAGCGGGGAGAACAAA+AGG | 0.520506 | 3.3:+87383736 | None:intergenic |
| GTTATTGCGATGCAGAGAGC+TGG | 0.520901 | 3.3:-87383277 | MS.gene014874:CDS |
| GAGAACAAAAGGAAGTTTCT+CGG | 0.527868 | 3.3:+87383747 | None:intergenic |
| ATTAGTATTTGGACTAATGG+TGG | 0.532835 | 3.3:-87381800 | MS.gene014874:CDS |
| TAAGTTTGGCGTATTTGAGA+AGG | 0.534048 | 3.3:+87383680 | None:intergenic |
| GGAATAACTGAAGGTGCCAT+GGG | 0.534697 | 3.3:-87381764 | MS.gene014874:CDS |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 3.3:+87381748 | None:intergenic |
| TGAGAGGTCCAAGACGGTGC+AGG | 0.535402 | 3.3:+87383807 | None:intergenic |
| TGCGAATGTTAAGCAATTGG+TGG | 0.535672 | 3.3:-87383470 | MS.gene014874:CDS |
| TGGAAGCAAAGAATCAAGCT+AGG | 0.539726 | 3.3:-87383399 | MS.gene014874:CDS |
| CACCGTCTTGGACCTCTCAC+CGG | 0.539796 | 3.3:-87383803 | MS.gene014874:CDS |
| GGCTCAAGCTAATTCTGAGT+TGG | 0.541784 | 3.3:-87383182 | MS.gene014874:CDS |
| AGAATTAGCTTGAGCCACTT+CGG | 0.542219 | 3.3:+87383189 | None:intergenic |
| GGCTCAGGTGGCTGAAGTTG+AGG | 0.543832 | 3.3:-87383131 | MS.gene014874:CDS |
| GAAGAAGGCTGTGGCTCTAA+GGG | 0.545005 | 3.3:-87383107 | MS.gene014874:CDS |
| GCGGAGGGAATTGTGACACT+TGG | 0.548836 | 3.3:-87381971 | MS.gene014874:CDS |
| ATATGAGAAATACTCATGAC+CGG | 0.550689 | 3.3:+87383441 | None:intergenic |
| GGTAAGGATCCCATCCAAGC+AGG | 0.550974 | 3.3:+87381662 | None:intergenic |
| TAAAGTGAGGACTGAAGTGA+AGG | 0.556664 | 3.3:-87383233 | MS.gene014874:CDS |
| AGTTGAGGCGAAGAAGGCTG+TGG | 0.558891 | 3.3:-87383116 | MS.gene014874:CDS |
| TAATGGTGGTGATAATGGTG+GGG | 0.564296 | 3.3:-87381786 | MS.gene014874:CDS |
| AAGACTGTCCATGAGCAGAC+AGG | 0.567979 | 3.3:-87381695 | MS.gene014874:CDS |
| ACTCATTGCTTGAACTTCGA+AGG | 0.568460 | 3.3:+87383771 | None:intergenic |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 3.3:-87381926 | MS.gene014874:CDS |
| GAAGAAAGCGGCTTGGACCA+AGG | 0.572319 | 3.3:-87383155 | MS.gene014874:CDS |
| GAAAACCTCCTCCATCGTCA+TGG | 0.573319 | 3.3:+87383573 | None:intergenic |
| AATGGTGGTGATAATGGTGG+GGG | 0.578110 | 3.3:-87381785 | MS.gene014874:CDS |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 3.3:-87381746 | MS.gene014874:CDS |
| ATTGGTTCAAAATTGAGGGA+AGG | 0.580771 | 3.3:-87383343 | MS.gene014874:CDS |
| TGCGATGCAGAGAGCTGGAG+AGG | 0.580805 | 3.3:-87383272 | MS.gene014874:CDS |
| GTGACACTTGGGAATGCTCA+AGG | 0.583871 | 3.3:-87381959 | MS.gene014874:CDS |
| TGGCTAAGAAGAAAGCGGCT+TGG | 0.585206 | 3.3:-87383162 | MS.gene014874:CDS |
| ATCAAGAATGAAAATTTACC+GGG | 0.586313 | 3.3:-87383920 | None:intergenic |
| AAGACGGTGCAGGATTGACC+GGG | 0.589066 | 3.3:+87383817 | None:intergenic |
| CGCTGCTTCCATGACGATGG+AGG | 0.591242 | 3.3:-87383581 | MS.gene014874:CDS |
| GGCAGAAGCACAGAAAGCAT+CGG | 0.592056 | 3.3:-87382059 | MS.gene014874:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 3.3:-87382080 | MS.gene014874:CDS |
| CGGAGGGAATTGTGACACTT+GGG | 0.601084 | 3.3:-87381970 | MS.gene014874:CDS |
| GCGATGCAGAGAGCTGGAGA+GGG | 0.601209 | 3.3:-87383271 | MS.gene014874:CDS |
| CTTGTTCAAGGAATCATCGA+AGG | 0.603463 | 3.3:-87383619 | MS.gene014874:CDS |
| AGTTGCAAGGTGAGGTCGAG+AGG | 0.604843 | 3.3:-87383078 | MS.gene014874:CDS |
| AGAAGGAGGGAATTAAAGTG+AGG | 0.607130 | 3.3:-87383246 | MS.gene014874:CDS |
| AGGTATAGTTTACCGGTGAG+AGG | 0.607470 | 3.3:+87383791 | None:intergenic |
| GTAGGTACAAGAAGCAAACT+GGG | 0.610546 | 3.3:-87382137 | MS.gene014874:intron |
| ACTAATGGTGGTGATAATGG+TGG | 0.611329 | 3.3:-87381788 | MS.gene014874:CDS |
| AAACGACTACACAGCTGTAA+GGG | 0.612269 | 3.3:-87381903 | MS.gene014874:CDS |
| CTAAGGGAAGCTGAGTTGCA+AGG | 0.613783 | 3.3:-87383091 | MS.gene014874:CDS |
| TTTGGGTCAAAAGACGCAGA+TGG | 0.613836 | 3.3:-87383419 | MS.gene014874:CDS |
| GTGTCAGAAGCTAAGATGAA+AGG | 0.614706 | 3.3:-87383370 | MS.gene014874:CDS |
| CTAATGGTGGTGATAATGGT+GGG | 0.616233 | 3.3:-87381787 | MS.gene014874:CDS |
| TCATGGACAGTCTTAAACAA+AGG | 0.617676 | 3.3:+87381704 | None:intergenic |
| TTGTTCAAGGAATCATCGAA+GGG | 0.619293 | 3.3:-87383618 | MS.gene014874:CDS |
| GGAAGCAAAGAATCAAGCTA+GGG | 0.626751 | 3.3:-87383398 | MS.gene014874:CDS |
| GTTCATTAACATGATTGGAG+TGG | 0.628854 | 3.3:+87383641 | None:intergenic |
| TGAGTTGGCTAAGAAGAAAG+CGG | 0.631786 | 3.3:-87383167 | MS.gene014874:CDS |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 3.3:-87381846 | MS.gene014874:CDS |
| GCTGTACAAGAAACAGAAAG+AGG | 0.643966 | 3.3:-87382113 | MS.gene014874:CDS |
| ACTCGCTGCTTCCATGACGA+TGG | 0.644314 | 3.3:-87383584 | MS.gene014874:CDS |
| GAATCAAAGAGAGGCCGAAG+TGG | 0.645129 | 3.3:-87383203 | MS.gene014874:CDS |
| TATGAGAAATACTCATGACC+GGG | 0.646479 | 3.3:+87383442 | None:intergenic |
| GGAAGCTGAGTTGCAAGGTG+AGG | 0.648282 | 3.3:-87383086 | MS.gene014874:CDS |
| TGGACAGTCTTAAACAAAGG+TGG | 0.649112 | 3.3:+87381707 | None:intergenic |
| TAGTGTTCAATATGAAACCA+AGG | 0.651992 | 3.3:-87383002 | MS.gene014874:intron |
| GAAAATTGATGCAGAGACGA+AGG | 0.652587 | 3.3:-87383299 | MS.gene014874:CDS |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 3.3:-87381881 | MS.gene014874:CDS |
| TGCTAAGATTAATGCCGAGG+CGG | 0.661554 | 3.3:-87381843 | MS.gene014874:CDS |
| TACCGGTGAGAGGTCCAAGA+CGG | 0.667806 | 3.3:+87383801 | None:intergenic |
| AAGGATCCCATCCAAGCAGG+AGG | 0.669932 | 3.3:+87381665 | None:intergenic |
| TGAAAATACCTGTTATCACA+AGG | 0.669974 | 3.3:+87383878 | None:intergenic |
| ATTAATGCCGAGGCGGTACG+CGG | 0.680968 | 3.3:-87381836 | MS.gene014874:CDS |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 3.3:+87383703 | None:intergenic |
| TGATTGGAGTGGCGATCATG+CGG | 0.696244 | 3.3:+87383652 | None:intergenic |
| TGTTCAAGGAATCATCGAAG+GGG | 0.705776 | 3.3:-87383617 | MS.gene014874:CDS |
| GACCAATTGTGAAGACAGCG+GGG | 0.714278 | 3.3:+87383725 | None:intergenic |
| AGGACCAATTGTGAAGACAG+CGG | 0.726189 | 3.3:+87383723 | None:intergenic |
| GAAAGCGGCTTGGACCAAGG+CGG | 0.735762 | 3.3:-87383152 | MS.gene014874:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATATAATTAATCATG+TGG | - | chr3.3:87383212-87383231 | MS.gene014874:CDS | 10.0% |
| !! | TTAATTGTATAATAATTCAT+AGG | + | chr3.3:87383123-87383142 | None:intergenic | 10.0% |
| !! | ATATCTTAAAGACTAATAAA+AGG | - | chr3.3:87382744-87382763 | MS.gene014874:intron | 15.0% |
| !! | TATTATTATGACATTATAGT+TGG | - | chr3.3:87382990-87383009 | MS.gene014874:intron | 15.0% |
| !!! | ATTACTGTAATTTAAGTTTT+TGG | - | chr3.3:87382686-87382705 | MS.gene014874:intron | 15.0% |
| !!! | TGATTATTGATTATGTTATA+TGG | - | chr3.3:87382827-87382846 | MS.gene014874:intron | 15.0% |
| !! | AGTGAATTATAATTTCATGA+TGG | - | chr3.3:87383151-87383170 | MS.gene014874:CDS | 20.0% |
| !! | GTAATTTGAATTGAAGAATA+TGG | - | chr3.3:87383238-87383257 | MS.gene014874:CDS | 20.0% |
| !! | TAACACTAATTACATTCTAA+TGG | - | chr3.3:87382720-87382739 | MS.gene014874:intron | 20.0% |
| !! | TCATAATAATAGTGTAACAA+AGG | + | chr3.3:87382981-87383000 | None:intergenic | 20.0% |
| !! | TGAAGTTATATATATTTCCA+TGG | + | chr3.3:87382593-87382612 | None:intergenic | 20.0% |
| !! | TTCATAGGTAATATTAACTA+TGG | + | chr3.3:87383108-87383127 | None:intergenic | 20.0% |
| !!! | AATATTTACCTTTTAAGTGT+TGG | - | chr3.3:87383340-87383359 | MS.gene014874:CDS | 20.0% |
| !!! | TTTTTTGGTCATTAAAACTT+TGG | - | chr3.3:87383388-87383407 | MS.gene014874:CDS | 20.0% |
| ! | AACAAGTTCATTAACATGAT+TGG | + | chr3.3:87381926-87381945 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | - | chr3.3:87383756-87383775 | MS.gene014874:CDS | 25.0% |
| ! | ATAAATCAATAGCTGTTGAT+AGG | - | chr3.3:87382656-87382675 | MS.gene014874:intron | 25.0% |
| ! | CATGAGTATTTCTCATATTT+GGG | - | chr3.3:87382123-87382142 | MS.gene014874:CDS | 25.0% |
| ! | TATAATAGCCAACACTTAAA+AGG | + | chr3.3:87383351-87383370 | None:intergenic | 25.0% |
| ! | TCATGAGTATTTCTCATATT+TGG | - | chr3.3:87382122-87382141 | MS.gene014874:CDS | 25.0% |
| ! | TGGCTATTATATAACTATAC+TGG | - | chr3.3:87383360-87383379 | MS.gene014874:CDS | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | + | chr3.3:87383756-87383775 | None:intergenic | 25.0% |
| !! | TGAAATTGGTTCAAAATTGA+GGG | - | chr3.3:87382212-87382231 | MS.gene014874:intron | 25.0% |
| !!! | ACTATACTGGATTACTTTTT+TGG | - | chr3.3:87383373-87383392 | MS.gene014874:CDS | 25.0% |
| !!! | CATGAGTATTGAAAATTCAA+TGG | - | chr3.3:87382945-87382964 | MS.gene014874:intron | 25.0% |
| AAACAAGCTGAAAAGTGAAA+AGG | + | chr3.3:87383279-87383298 | None:intergenic | 30.0% | |
| AATTACTGGGAAACAATCAA+AGG | + | chr3.3:87383070-87383089 | None:intergenic | 30.0% | |
| AGAGCTATACACAAAGAAAA+AGG | - | chr3.3:87383563-87383582 | MS.gene014874:CDS | 30.0% | |
| ATATGAGAAATACTCATGAC+CGG | + | chr3.3:87382121-87382140 | None:intergenic | 30.0% | |
| ATTAGTATTTGGACTAATGG+TGG | - | chr3.3:87383759-87383778 | MS.gene014874:CDS | 30.0% | |
| TAGTGTTCAATATGAAACCA+AGG | - | chr3.3:87382557-87382576 | MS.gene014874:intron | 30.0% | |
| TCAAACTCAAAAAGAAAGCA+TGG | - | chr3.3:87381713-87381732 | MS.gene014874:CDS | 30.0% | |
| TGAAAATACCTGTTATCACA+AGG | + | chr3.3:87381684-87381703 | None:intergenic | 30.0% | |
| TGTAATTAGTGTTATCACAG+AGG | + | chr3.3:87382714-87382733 | None:intergenic | 30.0% | |
| TTGAGCCTAAGATTAGTATT+TGG | - | chr3.3:87383748-87383767 | MS.gene014874:CDS | 30.0% | |
| TTGGTCATTAAAACTTTGGA+TGG | - | chr3.3:87383392-87383411 | MS.gene014874:CDS | 30.0% | |
| ! | AAAAGGATAGAGAACTTTTG+AGG | - | chr3.3:87382761-87382780 | MS.gene014874:intron | 30.0% |
| ! | AGGGATTACTTGATGATAAA+TGG | - | chr3.3:87383675-87383694 | MS.gene014874:CDS | 30.0% |
| ! | CATGTTAATGAACTTGTTCA+AGG | - | chr3.3:87381928-87381947 | MS.gene014874:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr3.3:87383678-87383697 | MS.gene014874:CDS | 30.0% |
| ! | GTGAAATTGGTTCAAAATTG+AGG | - | chr3.3:87382211-87382230 | MS.gene014874:intron | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+CGG | - | chr3.3:87382051-87382070 | MS.gene014874:CDS | 30.0% |
| AAGCTGAAAAGTGAAAAGGT+TGG | + | chr3.3:87383275-87383294 | None:intergenic | 35.0% | |
| ACTTTGGATGGTGTATATGT+AGG | - | chr3.3:87383404-87383423 | MS.gene014874:CDS | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | - | chr3.3:87383473-87383492 | MS.gene014874:CDS | 35.0% | |
| ATACACAAAGAAAAAGGAGG+CGG | - | chr3.3:87383569-87383588 | MS.gene014874:CDS | 35.0% | |
| ATCATGCGGTGAAATAAGTT+TGG | + | chr3.3:87381896-87381915 | None:intergenic | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | - | chr3.3:87382086-87382105 | MS.gene014874:CDS | 35.0% | |
| GAGAACAAAAGGAAGTTTCT+CGG | + | chr3.3:87381815-87381834 | None:intergenic | 35.0% | |
| GATTGTTTCCCAGTAATTGA+TGG | - | chr3.3:87383072-87383091 | MS.gene014874:CDS | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | - | chr3.3:87382198-87382217 | MS.gene014874:intron | 35.0% | |
| GCTATACACAAAGAAAAAGG+AGG | - | chr3.3:87383566-87383585 | MS.gene014874:CDS | 35.0% | |
| GTTCATTAACATGATTGGAG+TGG | + | chr3.3:87381921-87381940 | None:intergenic | 35.0% | |
| TAAGTTTGGCGTATTTGAGA+AGG | + | chr3.3:87381882-87381901 | None:intergenic | 35.0% | |
| TAGTGTAACAAAGGTTAAGC+AGG | + | chr3.3:87382972-87382991 | None:intergenic | 35.0% | |
| TATGAGAAATACTCATGACC+GGG | + | chr3.3:87382120-87382139 | None:intergenic | 35.0% | |
| TCAGAATACCTTGTGATAAC+AGG | - | chr3.3:87381673-87381692 | MS.gene014874:CDS | 35.0% | |
| TCATGGACAGTCTTAAACAA+AGG | + | chr3.3:87383858-87383877 | None:intergenic | 35.0% | |
| TTGTTCAAGGAATCATCGAA+GGG | - | chr3.3:87381941-87381960 | MS.gene014874:CDS | 35.0% | |
| ! | ACTTCGAAGGTATAGTTTAC+CGG | + | chr3.3:87381778-87381797 | None:intergenic | 35.0% |
| ! | ATTGGTTCAAAATTGAGGGA+AGG | - | chr3.3:87382216-87382235 | MS.gene014874:intron | 35.0% |
| ! | TTAAGAGCTTTTGTCAGGTA+AGG | + | chr3.3:87383916-87383935 | None:intergenic | 35.0% |
| !! | AAGAAAGCATGGATTTTTCC+CGG | - | chr3.3:87381724-87381743 | MS.gene014874:CDS | 35.0% |
| !! | GACTTTTGGGAAACAATCAA+TGG | + | chr3.3:87383016-87383035 | None:intergenic | 35.0% |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | - | chr3.3:87382347-87382366 | MS.gene014874:intron | 35.0% |
| AAACGACTACACAGCTGTAA+GGG | - | chr3.3:87383656-87383675 | MS.gene014874:CDS | 40.0% | |
| ACTCATTGCTTGAACTTCGA+AGG | + | chr3.3:87381791-87381810 | None:intergenic | 40.0% | |
| AGAAGGAGGGAATTAAAGTG+AGG | - | chr3.3:87382313-87382332 | MS.gene014874:intron | 40.0% | |
| AGCAACTTCTTTCATACCCA+TGG | + | chr3.3:87383814-87383833 | None:intergenic | 40.0% | |
| AGGCCAACTTCTCAATGTAT+CGG | + | chr3.3:87383050-87383069 | None:intergenic | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | - | chr3.3:87383633-87383652 | MS.gene014874:CDS | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | - | chr3.3:87383813-87383832 | MS.gene014874:CDS | 40.0% | |
| ATTCCAGCACCATCAATTAC+TGG | + | chr3.3:87383084-87383103 | None:intergenic | 40.0% | |
| CTTGTTCAAGGAATCATCGA+AGG | - | chr3.3:87381940-87381959 | MS.gene014874:CDS | 40.0% | |
| GAAAATTGATGCAGAGACGA+AGG | - | chr3.3:87382260-87382279 | MS.gene014874:intron | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | - | chr3.3:87383713-87383732 | MS.gene014874:CDS | 40.0% | |
| GATTGTTTCCCAAAAGTCAG+AGG | - | chr3.3:87383018-87383037 | MS.gene014874:CDS | 40.0% | |
| GCTGTACAAGAAACAGAAAG+AGG | - | chr3.3:87383446-87383465 | MS.gene014874:CDS | 40.0% | |
| GGAAGCAAAGAATCAAGCTA+GGG | - | chr3.3:87382161-87382180 | MS.gene014874:intron | 40.0% | |
| GTAGGTACAAGAAGCAAACT+GGG | - | chr3.3:87383422-87383441 | MS.gene014874:CDS | 40.0% | |
| GTGTCAGAAGCTAAGATGAA+AGG | - | chr3.3:87382189-87382208 | MS.gene014874:intron | 40.0% | |
| TAAAGTGAGGACTGAAGTGA+AGG | - | chr3.3:87382326-87382345 | MS.gene014874:intron | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | - | chr3.3:87382089-87382108 | MS.gene014874:CDS | 40.0% | |
| TGGAAGCAAAGAATCAAGCT+AGG | - | chr3.3:87382160-87382179 | MS.gene014874:intron | 40.0% | |
| TGGACAGTCTTAAACAAAGG+TGG | + | chr3.3:87383855-87383874 | None:intergenic | 40.0% | |
| TGTAGGTACAAGAAGCAAAC+TGG | - | chr3.3:87383421-87383440 | MS.gene014874:CDS | 40.0% | |
| TGTTCAAGGAATCATCGAAG+GGG | - | chr3.3:87381942-87381961 | MS.gene014874:CDS | 40.0% | |
| TTCCAGCACCATCAATTACT+GGG | + | chr3.3:87383083-87383102 | None:intergenic | 40.0% | |
| TTGCCGATACATTGAGAAGT+TGG | - | chr3.3:87383044-87383063 | MS.gene014874:CDS | 40.0% | |
| ! | AACTTCTCAATGTATCGGCA+AGG | + | chr3.3:87383045-87383064 | None:intergenic | 40.0% |
| ! | ACTTCTCAATGTATCGGCAA+GGG | + | chr3.3:87383044-87383063 | None:intergenic | 40.0% |
| ! | AGAATTAGCTTGAGCCACTT+CGG | + | chr3.3:87382373-87382392 | None:intergenic | 40.0% |
| ! | TCCATGGACTAAACTAACCT+TGG | + | chr3.3:87382577-87382596 | None:intergenic | 40.0% |
| ! | TGAGTTGGCTAAGAAGAAAG+CGG | - | chr3.3:87382392-87382411 | MS.gene014874:intron | 40.0% |
| ! | TGGACTAATGGTGGTGATAA+TGG | - | chr3.3:87383768-87383787 | MS.gene014874:CDS | 40.0% |
| !! | ACCAAGGTTAGTTTAGTCCA+TGG | - | chr3.3:87382573-87382592 | MS.gene014874:intron | 40.0% |
| !! | ACTAATGGTGGTGATAATGG+TGG | - | chr3.3:87383771-87383790 | MS.gene014874:CDS | 40.0% |
| !! | CTAATGGTGGTGATAATGGT+GGG | - | chr3.3:87383772-87383791 | MS.gene014874:CDS | 40.0% |
| !! | TAATGGTGGTGATAATGGTG+GGG | - | chr3.3:87383773-87383792 | MS.gene014874:CDS | 40.0% |
| ACAAAGAAAAAGGAGGCGGA+GGG | - | chr3.3:87383573-87383592 | MS.gene014874:CDS | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | + | chr3.3:87381839-87381858 | None:intergenic | 45.0% | |
| AGGTATAGTTTACCGGTGAG+AGG | + | chr3.3:87381771-87381790 | None:intergenic | 45.0% | |
| GAAACGACTACACAGCTGTA+AGG | - | chr3.3:87383655-87383674 | MS.gene014874:CDS | 45.0% | |
| GGCTCAAGCTAATTCTGAGT+TGG | - | chr3.3:87382377-87382396 | MS.gene014874:intron | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr3.3:87383479-87383498 | MS.gene014874:CDS | 45.0% | |
| TGCTAAGATTAATGCCGAGG+CGG | - | chr3.3:87383716-87383735 | MS.gene014874:CDS | 45.0% | |
| TTTGGGTCAAAAGACGCAGA+TGG | - | chr3.3:87382140-87382159 | MS.gene014874:intron | 45.0% | |
| ! | AATGGTGGGGGAATAACTGA+AGG | - | chr3.3:87383786-87383805 | MS.gene014874:CDS | 45.0% |
| !! | AATGGTGGTGATAATGGTGG+GGG | - | chr3.3:87383774-87383793 | MS.gene014874:CDS | 45.0% |
| !! | GGAATAACTGAAGGTGCCAT+GGG | - | chr3.3:87383795-87383814 | MS.gene014874:CDS | 45.0% |
| !! | TTCCCAGTAATTGATGGTGC+TGG | - | chr3.3:87383078-87383097 | MS.gene014874:CDS | 45.0% |
| AAGACAGCGGGGAGAACAAA+AGG | + | chr3.3:87381826-87381845 | None:intergenic | 50.0% | |
| AAGACTGTCCATGAGCAGAC+AGG | - | chr3.3:87383864-87383883 | MS.gene014874:CDS | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | - | chr3.3:87383888-87383907 | MS.gene014874:CDS | 50.0% | |
| ATTCTGATGCTTTCGCGACC+CGG | + | chr3.3:87381660-87381679 | None:intergenic | 50.0% | |
| CACAAAGAAAAAGGAGGCGG+AGG | - | chr3.3:87383572-87383591 | MS.gene014874:CDS | 50.0% | |
| CGGAGGGAATTGTGACACTT+GGG | - | chr3.3:87383589-87383608 | MS.gene014874:CDS | 50.0% | |
| CTAAGGGAAGCTGAGTTGCA+AGG | - | chr3.3:87382468-87382487 | MS.gene014874:intron | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | + | chr3.3:87381859-87381878 | None:intergenic | 50.0% | |
| GAAAACCTCCTCCATCGTCA+TGG | + | chr3.3:87381989-87382008 | None:intergenic | 50.0% | |
| GAATCAAAGAGAGGCCGAAG+TGG | - | chr3.3:87382356-87382375 | MS.gene014874:intron | 50.0% | |
| GACCAATTGTGAAGACAGCG+GGG | + | chr3.3:87381837-87381856 | None:intergenic | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | + | chr3.3:87381838-87381857 | None:intergenic | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | - | chr3.3:87383600-87383619 | MS.gene014874:CDS | 50.0% | |
| GTTATTGCGATGCAGAGAGC+TGG | - | chr3.3:87382282-87382301 | MS.gene014874:intron | 50.0% | |
| TGATTGGAGTGGCGATCATG+CGG | + | chr3.3:87381910-87381929 | None:intergenic | 50.0% | |
| TGGCTAAGAAGAAAGCGGCT+TGG | - | chr3.3:87382397-87382416 | MS.gene014874:intron | 50.0% | |
| ! | ACGATGGAGGAGGTTTTCAG+AGG | - | chr3.3:87381991-87382010 | MS.gene014874:CDS | 50.0% |
| ! | GGCAGAAGCACAGAAAGCAT+CGG | - | chr3.3:87383500-87383519 | MS.gene014874:CDS | 50.0% |
| !! | GAAGAAGGCTGTGGCTCTAA+GGG | - | chr3.3:87382452-87382471 | MS.gene014874:intron | 50.0% |
| !! | GGGAATAACTGAAGGTGCCA+TGG | - | chr3.3:87383794-87383813 | MS.gene014874:CDS | 50.0% |
| AAGACGGTGCAGGATTGACC+GGG | + | chr3.3:87381745-87381764 | None:intergenic | 55.0% | |
| AAGGATCCCATCCAAGCAGG+AGG | + | chr3.3:87383897-87383916 | None:intergenic | 55.0% | |
| ACTCGCTGCTTCCATGACGA+TGG | - | chr3.3:87381975-87381994 | MS.gene014874:CDS | 55.0% | |
| AGTTGAGGCGAAGAAGGCTG+TGG | - | chr3.3:87382443-87382462 | MS.gene014874:intron | 55.0% | |
| AGTTGCAAGGTGAGGTCGAG+AGG | - | chr3.3:87382481-87382500 | MS.gene014874:intron | 55.0% | |
| ATTAATGCCGAGGCGGTACG+CGG | - | chr3.3:87383723-87383742 | MS.gene014874:CDS | 55.0% | |
| CAAGACGGTGCAGGATTGAC+CGG | + | chr3.3:87381746-87381765 | None:intergenic | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | - | chr3.3:87383887-87383906 | MS.gene014874:CDS | 55.0% | |
| CTCCCCGCTGTCTTCACAAT+TGG | - | chr3.3:87381832-87381851 | MS.gene014874:CDS | 55.0% | |
| GCAACATGCCTGTCTGCTCA+TGG | + | chr3.3:87383875-87383894 | None:intergenic | 55.0% | |
| GCGGAGGGAATTGTGACACT+TGG | - | chr3.3:87383588-87383607 | MS.gene014874:CDS | 55.0% | |
| GGAAGCTGAGTTGCAAGGTG+AGG | - | chr3.3:87382473-87382492 | MS.gene014874:intron | 55.0% | |
| GGCTGAAGTTGAGGCGAAGA+AGG | - | chr3.3:87382437-87382456 | MS.gene014874:intron | 55.0% | |
| GGTAAGGATCCCATCCAAGC+AGG | + | chr3.3:87383900-87383919 | None:intergenic | 55.0% | |
| TACCGGTGAGAGGTCCAAGA+CGG | + | chr3.3:87381761-87381780 | None:intergenic | 55.0% | |
| TGCTTCCATGACGATGGAGG+AGG | - | chr3.3:87381981-87382000 | MS.gene014874:CDS | 55.0% | |
| ! | AAGCAATTGGTGGACGTGCC+CGG | - | chr3.3:87382099-87382118 | MS.gene014874:CDS | 55.0% |
| ! | CGAAGAAGGCTGTGGCTCTA+AGG | - | chr3.3:87382451-87382470 | MS.gene014874:intron | 55.0% |
| ! | GAAGAAAGCGGCTTGGACCA+AGG | - | chr3.3:87382404-87382423 | MS.gene014874:intron | 55.0% |
| ! | GGCAAGGGCCTCTGACTTTT+GGG | + | chr3.3:87383029-87383048 | None:intergenic | 55.0% |
| ! | TGGTCCTCGTGTTGACGATC+AGG | - | chr3.3:87381852-87381871 | MS.gene014874:CDS | 55.0% |
| AGCTGGAGAGGGTGAGAAGG+AGG | - | chr3.3:87382299-87382318 | MS.gene014874:intron | 60.0% | |
| CACCGTCTTGGACCTCTCAC+CGG | - | chr3.3:87381756-87381775 | MS.gene014874:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | - | chr3.3:87383883-87383902 | MS.gene014874:CDS | 60.0% | |
| CGCTGCTTCCATGACGATGG+AGG | - | chr3.3:87381978-87381997 | MS.gene014874:CDS | 60.0% | |
| CGGTCAATCCTGCACCGTCT+TGG | - | chr3.3:87381744-87381763 | MS.gene014874:CDS | 60.0% | |
| GAGAGCTGGAGAGGGTGAGA+AGG | - | chr3.3:87382296-87382315 | MS.gene014874:intron | 60.0% | |
| GCGATGCAGAGAGCTGGAGA+GGG | - | chr3.3:87382288-87382307 | MS.gene014874:intron | 60.0% | |
| GCTGGAGAGGGTGAGAAGGA+GGG | - | chr3.3:87382300-87382319 | MS.gene014874:intron | 60.0% | |
| GGCTCAGGTGGCTGAAGTTG+AGG | - | chr3.3:87382428-87382447 | MS.gene014874:intron | 60.0% | |
| TGAGAGGTCCAAGACGGTGC+AGG | + | chr3.3:87381755-87381774 | None:intergenic | 60.0% | |
| TGCGATGCAGAGAGCTGGAG+AGG | - | chr3.3:87382287-87382306 | MS.gene014874:intron | 60.0% | |
| ! | CGGCAAGGGCCTCTGACTTT+TGG | + | chr3.3:87383030-87383049 | None:intergenic | 60.0% |
| ! | GAAAGCGGCTTGGACCAAGG+CGG | - | chr3.3:87382407-87382426 | MS.gene014874:intron | 60.0% |
| CTCAAGTCCGCGTACCGCCT+CGG | + | chr3.3:87383733-87383752 | None:intergenic | 65.0% | |
| TTCAGCCACCTGAGCCGCCT+TGG | + | chr3.3:87382424-87382443 | None:intergenic | 65.0% | |
| TTGGACCAAGGCGGCTCAGG+TGG | - | chr3.3:87382416-87382435 | MS.gene014874:intron | 65.0% | |
| GGCTTGGACCAAGGCGGCTC+AGG | - | chr3.3:87382413-87382432 | MS.gene014874:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 87381646 | 87383935 | 87381646 | ID=MS.gene014874 |
| chr3.3 | mRNA | 87381646 | 87383935 | 87381646 | ID=MS.gene014874.t1;Parent=MS.gene014874 |
| chr3.3 | exon | 87383003 | 87383935 | 87383003 | ID=MS.gene014874.t1.exon1;Parent=MS.gene014874.t1 |
| chr3.3 | CDS | 87383003 | 87383935 | 87383003 | ID=cds.MS.gene014874.t1;Parent=MS.gene014874.t1 |
| chr3.3 | exon | 87381646 | 87382155 | 87381646 | ID=MS.gene014874.t1.exon2;Parent=MS.gene014874.t1 |
| chr3.3 | CDS | 87381646 | 87382155 | 87381646 | ID=cds.MS.gene014874.t1;Parent=MS.gene014874.t1 |
| Gene Sequence |
| Protein sequence |
