Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056054.t1 | XP_003591134.1 | 89.5 | 477 | 45 | 1 | 1 | 477 | 1 | 472 | 5.30E-181 | 644 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056054.t1 | D2XNR2 | 89.5 | 477 | 45 | 1 | 1 | 477 | 1 | 472 | 1.3e-183 | 644.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056054.t1 | G7I8N5 | 89.5 | 477 | 45 | 1 | 1 | 477 | 1 | 472 | 3.8e-181 | 644.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056054 | MS.gene44118 | 0.846589 | 1.98E-59 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056054.t1 | MTR_1g083190 | 96.855 | 477 | 10 | 1 | 1 | 477 | 1 | 472 | 0.0 | 927 |
| MS.gene056054.t1 | MTR_3g106420 | 94.167 | 480 | 25 | 1 | 1 | 477 | 1 | 480 | 0.0 | 887 |
| MS.gene056054.t1 | MTR_3g106480 | 90.586 | 478 | 42 | 1 | 3 | 477 | 1 | 478 | 0.0 | 875 |
| MS.gene056054.t1 | MTR_3g106485 | 91.368 | 475 | 40 | 1 | 3 | 477 | 1 | 474 | 0.0 | 849 |
| MS.gene056054.t1 | MTR_3g106430 | 92.405 | 474 | 35 | 1 | 3 | 476 | 1 | 473 | 0.0 | 832 |
| MS.gene056054.t1 | MTR_1g073400 | 89.474 | 475 | 49 | 1 | 3 | 477 | 1 | 474 | 0.0 | 818 |
| MS.gene056054.t1 | MTR_1g071130 | 84.000 | 475 | 50 | 1 | 3 | 477 | 1 | 449 | 0.0 | 811 |
| MS.gene056054.t1 | MTR_1g115145 | 86.875 | 480 | 51 | 5 | 3 | 477 | 1 | 473 | 0.0 | 809 |
| MS.gene056054.t1 | MTR_3g106470 | 83.019 | 477 | 22 | 3 | 3 | 476 | 32 | 452 | 0.0 | 744 |
| MS.gene056054.t1 | MTR_8g063830 | 79.957 | 464 | 51 | 5 | 3 | 463 | 1 | 425 | 0.0 | 657 |
| MS.gene056054.t1 | MTR_3g065540 | 62.609 | 115 | 16 | 1 | 42 | 156 | 14 | 101 | 6.30e-38 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056054.t1 | AT5G25260 | 73.093 | 472 | 114 | 2 | 3 | 472 | 1 | 461 | 0.0 | 711 |
| MS.gene056054.t1 | AT5G25250 | 72.979 | 470 | 116 | 1 | 3 | 472 | 1 | 459 | 0.0 | 706 |
| MS.gene056054.t1 | AT5G64870 | 70.763 | 472 | 124 | 2 | 4 | 472 | 3 | 463 | 0.0 | 647 |
Find 117 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAGTATTTCTCATATT+TGG | 0.119823 | 1.1:-61533858 | MS.gene056054:CDS |
| TTGAGCCTAAGATTAGTATT+TGG | 0.251063 | 1.1:-61532680 | MS.gene056054:CDS |
| CATGAGTATTTCTCATATTT+GGG | 0.292202 | 1.1:-61533857 | MS.gene056054:CDS |
| AACAAGTTCATTAACATGAT+TGG | 0.311801 | 1.1:+61534057 | None:intergenic |
| CGAAGAAGGCTGTGGCTCTA+AGG | 0.317541 | 1.1:-61533529 | MS.gene056054:CDS |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 1.1:-61533782 | MS.gene056054:CDS |
| GTCAACCCTAGCTTGATTCT+TGG | 0.329722 | 1.1:+61533814 | None:intergenic |
| AGAGCTTTATGCAAAGAAAA+AGG | 0.337974 | 1.1:-61532865 | MS.gene056054:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.347159 | 1.1:-61532753 | MS.gene056054:CDS |
| CAACTTGAGTTGAATCAATT+CGG | 0.350972 | 1.1:-61533929 | MS.gene056054:CDS |
| ACTAACGGTGGCGGCGATAA+TGG | 0.358246 | 1.1:-61532657 | MS.gene056054:CDS |
| TCAAAACCATGAAAATTTAC+CGG | 0.364824 | 1.1:-61534342 | None:intergenic |
| TGTAGGTACAAGAAGCAAAC+TGG | 0.373363 | 1.1:-61533007 | MS.gene056054:intron |
| ACTTCGAAGGTGTAGTTTAC+CGG | 0.380695 | 1.1:+61534205 | None:intergenic |
| GTGAAATTGGTTCAAAATTG+AGG | 0.384625 | 1.1:-61533769 | MS.gene056054:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.384650 | 1.1:+61532675 | None:intergenic |
| CGGTCAATCCTGTTCTGTCT+TGG | 0.385218 | 1.1:-61534236 | MS.gene056054:CDS |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 1.1:-61533894 | MS.gene056054:CDS |
| TCAGAATACCTTGTGATAAC+AGG | 0.405430 | 1.1:-61534307 | MS.gene056054:CDS |
| GGCTTGGACCAAGGCGGCTC+AGG | 0.413477 | 1.1:-61533567 | MS.gene056054:CDS |
| CATGTTAATGAACTTGTTCA+AGG | 0.419850 | 1.1:-61534052 | MS.gene056054:CDS |
| TTCAGCCACCTGAGCCGCCT+TGG | 0.421816 | 1.1:+61533559 | None:intergenic |
| CGGTCCTCGTGTGGATGATA+AGG | 0.423356 | 1.1:-61534128 | MS.gene056054:CDS |
| GGCTGGGGAGGGTGACAAGG+AGG | 0.433381 | 1.1:-61533681 | MS.gene056054:CDS |
| TGAAATTGGTTCAAAATTGA+GGG | 0.433449 | 1.1:-61533768 | MS.gene056054:CDS |
| TTATTGCGATGCAGAGGGCT+GGG | 0.452498 | 1.1:-61533697 | MS.gene056054:CDS |
| AGCATGCGGTGAAATAAGTT+TGG | 0.456709 | 1.1:+61534087 | None:intergenic |
| GTTATTGCGATGCAGAGGGC+TGG | 0.467250 | 1.1:-61533698 | MS.gene056054:CDS |
| AAGACAGCGGGGAGAACAAA+AGG | 0.470694 | 1.1:+61534157 | None:intergenic |
| GTAACATCTCCGTTTGCTCA+TGG | 0.473481 | 1.1:+61532565 | None:intergenic |
| TGCGATGCAGAGGGCTGGGG+AGG | 0.475380 | 1.1:-61533693 | MS.gene056054:CDS |
| AAGAAAGCATGGATTATTCC+CGG | 0.476347 | 1.1:-61534256 | MS.gene056054:CDS |
| TTGGACCAAGGCGGCTCAGG+TGG | 0.476684 | 1.1:-61533564 | MS.gene056054:CDS |
| GATGTTACCACCTGCTTGGA+TGG | 0.478172 | 1.1:-61532550 | MS.gene056054:CDS |
| CTCCCCGCTGTCTTCACTAT+CGG | 0.478414 | 1.1:-61534148 | MS.gene056054:CDS |
| GAAACAACTACACAGCTGTA+AGG | 0.490449 | 1.1:-61532773 | MS.gene056054:CDS |
| TGAGAGGTCCAAGACAGAAC+AGG | 0.492527 | 1.1:+61534228 | None:intergenic |
| CAAGACAGAACAGGATTGAC+CGG | 0.494108 | 1.1:+61534237 | None:intergenic |
| CAAAACCATGAAAATTTACC+GGG | 0.508642 | 1.1:-61534341 | None:intergenic |
| AGCAATTCTGTATGAGAAGA+AGG | 0.509643 | 1.1:-61532955 | MS.gene056054:CDS |
| AGTACACTTCTTAATGCACT+TGG | 0.511750 | 1.1:-61532795 | MS.gene056054:CDS |
| TGCTTCCATGACGATGGAGG+AGG | 0.512100 | 1.1:-61533999 | MS.gene056054:CDS |
| GGACCGATAGTGAAGACAGC+GGG | 0.513792 | 1.1:+61534145 | None:intergenic |
| CGATAATGGTGAAGGTGCCA+TGG | 0.514200 | 1.1:-61532643 | MS.gene056054:CDS |
| TTCTGTCTTGGACCTCTCAC+CGG | 0.515981 | 1.1:-61534224 | MS.gene056054:CDS |
| GAGGGCTGGGGAGGGTGACA+AGG | 0.520045 | 1.1:-61533684 | MS.gene056054:CDS |
| GGCTGAAGTCGAGGCGAAGA+AGG | 0.523986 | 1.1:-61533543 | MS.gene056054:CDS |
| GCGATGCAGAGGGCTGGGGA+GGG | 0.526835 | 1.1:-61533692 | MS.gene056054:CDS |
| CGGAGATGTTACCACCTGCT+TGG | 0.527198 | 1.1:-61532554 | MS.gene056054:CDS |
| GAGAACAAAAGGAAGTTTCT+CGG | 0.527868 | 1.1:+61534168 | None:intergenic |
| TAAGTTTGGCGTATTTGAGA+AGG | 0.534048 | 1.1:+61534101 | None:intergenic |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 1.1:+61532626 | None:intergenic |
| GGCAAGACTCCCATCCAAGC+AGG | 0.534806 | 1.1:+61532540 | None:intergenic |
| CTAAGGGAAGCTGAGTTACA+AGG | 0.541402 | 1.1:-61533512 | MS.gene056054:CDS |
| GGCTCAAGCTAATTCTGAGT+TGG | 0.541784 | 1.1:-61533603 | MS.gene056054:CDS |
| GAAGAAGGCTGTGGCTCTAA+GGG | 0.545005 | 1.1:-61533528 | MS.gene056054:CDS |
| TATTGCGATGCAGAGGGCTG+GGG | 0.546542 | 1.1:-61533696 | MS.gene056054:CDS |
| TGCTGCTTCCATGACGATGG+AGG | 0.547408 | 1.1:-61534002 | MS.gene056054:CDS |
| TAAGACCGTCCATGAGCAAA+CGG | 0.547678 | 1.1:-61532574 | MS.gene056054:CDS |
| TGGAAGCCAAGAATCAAGCT+AGG | 0.548842 | 1.1:-61533820 | MS.gene056054:CDS |
| GTGACACTTGGACAAGCTCA+AGG | 0.553312 | 1.1:-61532828 | MS.gene056054:CDS |
| AGTCGAGGCGAAGAAGGCTG+TGG | 0.558891 | 1.1:-61533537 | MS.gene056054:CDS |
| GGCTCAGGTGGCTGAAGTCG+AGG | 0.562422 | 1.1:-61533552 | MS.gene056054:CDS |
| TGCGAATGTTAAGCAATTGG+TGG | 0.563120 | 1.1:-61533891 | MS.gene056054:CDS |
| AAGATTAGTATTTGGACTAA+CGG | 0.563509 | 1.1:-61532672 | MS.gene056054:CDS |
| ATTGAACACTAGCTTTGCTA+AGG | 0.566032 | 1.1:+61533435 | None:intergenic |
| GAAGAAAGCGGCTTGGACCA+AGG | 0.572319 | 1.1:-61533576 | MS.gene056054:CDS |
| TAAAACTCGCAAAGAAAGCA+TGG | 0.572673 | 1.1:-61534267 | MS.gene056054:CDS |
| GAAAACCTCCTCCATCGTCA+TGG | 0.573319 | 1.1:+61533994 | None:intergenic |
| ATGTTACCACCTGCTTGGAT+GGG | 0.573544 | 1.1:-61532549 | MS.gene056054:CDS |
| GCAGAGGGAATTGTGACACT+TGG | 0.575919 | 1.1:-61532840 | MS.gene056054:CDS |
| CTTCACTATCGGTCCTCGTG+TGG | 0.576587 | 1.1:-61534137 | MS.gene056054:CDS |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 1.1:-61532624 | MS.gene056054:CDS |
| ATTGGTTCAAAATTGAGGGA+AGG | 0.580771 | 1.1:-61533764 | MS.gene056054:CDS |
| TCTTGCTGCTTCCATGACGA+TGG | 0.585164 | 1.1:-61534005 | MS.gene056054:CDS |
| TGGCTAAGAAGAAAGCGGCT+TGG | 0.585206 | 1.1:-61533583 | MS.gene056054:CDS |
| AAACAACTACACAGCTGTAA+GGG | 0.585417 | 1.1:-61532772 | MS.gene056054:CDS |
| CGAAGGTTATTGCGATGCAG+AGG | 0.587186 | 1.1:-61533703 | MS.gene056054:CDS |
| GCTGGGGAGGGTGACAAGGA+GGG | 0.589298 | 1.1:-61533680 | MS.gene056054:CDS |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 1.1:-61533624 | MS.gene056054:CDS |
| GGCAGAAGCACAGAAAGCAT+CGG | 0.592056 | 1.1:-61532928 | MS.gene056054:CDS |
| GATAATGGTGAAGGTGCCAT+GGG | 0.600255 | 1.1:-61532642 | MS.gene056054:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 1.1:-61532949 | MS.gene056054:CDS |
| TCATGGACGGTCTTAAACAA+AGG | 0.601527 | 1.1:+61532582 | None:intergenic |
| ACTCATAGCTTGAACTTCGA+AGG | 0.602674 | 1.1:+61534192 | None:intergenic |
| AGTTACAAGGTGAAGTTGAG+AGG | 0.609202 | 1.1:-61533499 | MS.gene056054:CDS |
| TGACACTTGGACAAGCTCAA+GGG | 0.610411 | 1.1:-61532827 | MS.gene056054:CDS |
| TTTGGGTCAAAAGACGCAGA+TGG | 0.613836 | 1.1:-61533840 | MS.gene056054:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 1.1:-61533791 | MS.gene056054:CDS |
| GACACTTGGACAAGCTCAAG+GGG | 0.615609 | 1.1:-61532826 | MS.gene056054:CDS |
| AGGTGTAGTTTACCGGTGAG+AGG | 0.619207 | 1.1:+61534212 | None:intergenic |
| AGTATTTGGACTAACGGTGG+CGG | 0.622001 | 1.1:-61532666 | MS.gene056054:CDS |
| GTAGGTACAAGAAGCAAACT+GGG | 0.627939 | 1.1:-61533006 | MS.gene056054:intron |
| CATCTCCGTTTGCTCATGGA+CGG | 0.630434 | 1.1:+61532569 | None:intergenic |
| TGAGTTGGCTAAGAAGAAAG+CGG | 0.631786 | 1.1:-61533588 | MS.gene056054:CDS |
| GAAGGTTATTGCGATGCAGA+GGG | 0.633633 | 1.1:-61533702 | MS.gene056054:CDS |
| CTTGTTCAAGGAATCATCGA+AGG | 0.639303 | 1.1:-61534040 | MS.gene056054:CDS |
| GGAAGCCAAGAATCAAGCTA+GGG | 0.640292 | 1.1:-61533819 | MS.gene056054:CDS |
| TAGTGTTCAATATGAAACCA+AGG | 0.651992 | 1.1:-61533423 | MS.gene056054:intron |
| GAAAATTGATGCAGAGACGA+AGG | 0.652587 | 1.1:-61533720 | MS.gene056054:CDS |
| GAATCAAGCTAGGGTTGACG+TGG | 0.658059 | 1.1:-61533810 | MS.gene056054:CDS |
| GGTGGCGGCGATAATGGTGA+AGG | 0.658257 | 1.1:-61532651 | MS.gene056054:CDS |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 1.1:-61532750 | MS.gene056054:CDS |
| TGGACGGTCTTAAACAAAGG+TGG | 0.660087 | 1.1:+61532585 | None:intergenic |
| AAGACAGAACAGGATTGACC+GGG | 0.664744 | 1.1:+61534238 | None:intergenic |
| ATTAGTATTTGGACTAACGG+TGG | 0.669931 | 1.1:-61532669 | MS.gene056054:CDS |
| TCAAAATACCTGTTATCACA+AGG | 0.672413 | 1.1:+61534299 | None:intergenic |
| ATTAACGCTGAGGCAATACG+CGG | 0.674079 | 1.1:-61532705 | MS.gene056054:CDS |
| AAGACTCCCATCCAAGCAGG+TGG | 0.679480 | 1.1:+61532543 | None:intergenic |
| GATTGCTAAGATTAACGCTG+AGG | 0.687241 | 1.1:-61532715 | MS.gene056054:CDS |
| AAGCAATTGGTGGATGTGCG+CGG | 0.690257 | 1.1:-61533881 | MS.gene056054:CDS |
| ACAAGGAGGGAATTAAAGTG+AGG | 0.693697 | 1.1:-61533667 | MS.gene056054:CDS |
| CTTTCCTTATCATCCACACG+AGG | 0.701431 | 1.1:+61534124 | None:intergenic |
| GACCGATAGTGAAGACAGCG+GGG | 0.713902 | 1.1:+61534146 | None:intergenic |
| GAAAGCGGCTTGGACCAAGG+CGG | 0.735762 | 1.1:-61533573 | MS.gene056054:CDS |
| AGGACCGATAGTGAAGACAG+CGG | 0.753084 | 1.1:+61534144 | None:intergenic |
| TGATTGGAGTGTCTAGCATG+CGG | 0.779262 | 1.1:+61534073 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAAATTGAATTTGCA+TGG | + | chr1.1:61533471-61533490 | None:intergenic | 15.0% |
| !!! | AATTTTAAAAGACTAATGAA+AGG | - | chr1.1:61533563-61533582 | MS.gene056054:CDS | 15.0% |
| !!! | ACATTACACTATTATTTTTT+TGG | - | chr1.1:61533805-61533824 | MS.gene056054:CDS | 15.0% |
| !!! | TCATTATTGATTATGTTATA+TGG | - | chr1.1:61533646-61533665 | MS.gene056054:CDS | 15.0% |
| !!! | TTTTTTGGTCATTAAAACTT+TGG | - | chr1.1:61533820-61533839 | MS.gene056054:CDS | 20.0% |
| ! | AACAAGTTCATTAACATGAT+TGG | + | chr1.1:61532804-61532823 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+CGG | - | chr1.1:61534186-61534205 | MS.gene056054:CDS | 25.0% |
| ! | ATAAATCAATAGCTGTTGAT+AGG | - | chr1.1:61533525-61533544 | MS.gene056054:CDS | 25.0% |
| ! | CATGAGTATTTCTCATATTT+GGG | - | chr1.1:61533001-61533020 | MS.gene056054:CDS | 25.0% |
| ! | TAATGTAACAAAGATTAAGC+AGG | + | chr1.1:61533791-61533810 | None:intergenic | 25.0% |
| ! | TCATGAGTATTTCTCATATT+TGG | - | chr1.1:61533000-61533019 | MS.gene056054:CDS | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | + | chr1.1:61534186-61534205 | None:intergenic | 25.0% |
| !! | TGAAATTGGTTCAAAATTGA+GGG | - | chr1.1:61533090-61533109 | MS.gene056054:intron | 25.0% |
| !!! | CATGAGTATTGAAAATTCAA+TGG | - | chr1.1:61533764-61533783 | MS.gene056054:CDS | 25.0% |
| TAGTGTTCAATATGAAACCA+AGG | - | chr1.1:61533435-61533454 | MS.gene056054:CDS | 30.0% | |
| TCAAAATACCTGTTATCACA+AGG | + | chr1.1:61532562-61532581 | None:intergenic | 30.0% | |
| TTGAGCCTAAGATTAGTATT+TGG | - | chr1.1:61534178-61534197 | MS.gene056054:CDS | 30.0% | |
| TTGGTCATTAAAACTTTGGA+TGG | - | chr1.1:61533824-61533843 | MS.gene056054:CDS | 30.0% | |
| ! | AGAGCTTTATGCAAAGAAAA+AGG | - | chr1.1:61533993-61534012 | MS.gene056054:CDS | 30.0% |
| ! | AGGGATTACTTGATGATAAA+TGG | - | chr1.1:61534105-61534124 | MS.gene056054:CDS | 30.0% |
| ! | CATGTTAATGAACTTGTTCA+AGG | - | chr1.1:61532806-61532825 | MS.gene056054:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr1.1:61534108-61534127 | MS.gene056054:CDS | 30.0% |
| ! | GTGAAATTGGTTCAAAATTG+AGG | - | chr1.1:61533089-61533108 | MS.gene056054:intron | 30.0% |
| !! | AGTTTTTGAGAATCAAAGAG+AGG | - | chr1.1:61533225-61533244 | MS.gene056054:intron | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+CGG | - | chr1.1:61532929-61532948 | MS.gene056054:CDS | 30.0% |
| AAACAACTACACAGCTGTAA+GGG | - | chr1.1:61534086-61534105 | MS.gene056054:CDS | 35.0% | |
| AAACTTTGGATGGTGTATGT+AGG | - | chr1.1:61533834-61533853 | MS.gene056054:CDS | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | - | chr1.1:61533903-61533922 | MS.gene056054:CDS | 35.0% | |
| AGTACACTTCTTAATGCACT+TGG | - | chr1.1:61534063-61534082 | MS.gene056054:CDS | 35.0% | |
| ATTAGTATTTGGACTAACGG+TGG | - | chr1.1:61534189-61534208 | MS.gene056054:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | - | chr1.1:61532964-61532983 | MS.gene056054:CDS | 35.0% | |
| GAGAACAAAAGGAAGTTTCT+CGG | + | chr1.1:61532693-61532712 | None:intergenic | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | - | chr1.1:61533076-61533095 | MS.gene056054:intron | 35.0% | |
| GCTGTACAAAAAACAGAAAG+AGG | - | chr1.1:61533876-61533895 | MS.gene056054:CDS | 35.0% | |
| GCTTTATGCAAAGAAAAAGG+AGG | - | chr1.1:61533996-61534015 | MS.gene056054:CDS | 35.0% | |
| TAAAACTCGCAAAGAAAGCA+TGG | - | chr1.1:61532591-61532610 | MS.gene056054:CDS | 35.0% | |
| TAAGTTTGGCGTATTTGAGA+AGG | + | chr1.1:61532760-61532779 | None:intergenic | 35.0% | |
| TCAGAATACCTTGTGATAAC+AGG | - | chr1.1:61532551-61532570 | MS.gene056054:CDS | 35.0% | |
| ! | AAGAAAGCATGGATTATTCC+CGG | - | chr1.1:61532602-61532621 | MS.gene056054:CDS | 35.0% |
| ! | ATTGGTTCAAAATTGAGGGA+AGG | - | chr1.1:61533094-61533113 | MS.gene056054:intron | 35.0% |
| ! | GAAAGGATAGACAACTTTTG+AGG | - | chr1.1:61533580-61533599 | MS.gene056054:CDS | 35.0% |
| !! | ATTGAACACTAGCTTTGCTA+AGG | + | chr1.1:61533426-61533445 | None:intergenic | 35.0% |
| !! | GTTTGAACTGTTTTGTTCCT+TGG | + | chr1.1:61532889-61532908 | None:intergenic | 35.0% |
| ACAAGGAGGGAATTAAAGTG+AGG | - | chr1.1:61533191-61533210 | MS.gene056054:intron | 40.0% | |
| ACTCATAGCTTGAACTTCGA+AGG | + | chr1.1:61532669-61532688 | None:intergenic | 40.0% | |
| AGCAACTTCTTTCATACCCA+TGG | + | chr1.1:61534235-61534254 | None:intergenic | 40.0% | |
| AGCATGCGGTGAAATAAGTT+TGG | + | chr1.1:61532774-61532793 | None:intergenic | 40.0% | |
| AGTTACAAGGTGAAGTTGAG+AGG | - | chr1.1:61533359-61533378 | MS.gene056054:intron | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | - | chr1.1:61534234-61534253 | MS.gene056054:CDS | 40.0% | |
| CTTGTTCAAGGAATCATCGA+AGG | - | chr1.1:61532818-61532837 | MS.gene056054:CDS | 40.0% | |
| GAAAATTGATGCAGAGACGA+AGG | - | chr1.1:61533138-61533157 | MS.gene056054:intron | 40.0% | |
| GAAACAACTACACAGCTGTA+AGG | - | chr1.1:61534085-61534104 | MS.gene056054:CDS | 40.0% | |
| GATTGCTAAGATTAACGCTG+AGG | - | chr1.1:61534143-61534162 | MS.gene056054:CDS | 40.0% | |
| GTAGGTACAAGAAGCAAACT+GGG | - | chr1.1:61533852-61533871 | MS.gene056054:CDS | 40.0% | |
| TCATGGACGGTCTTAAACAA+AGG | + | chr1.1:61534279-61534298 | None:intergenic | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | - | chr1.1:61532967-61532986 | MS.gene056054:CDS | 40.0% | |
| TGTAGGTACAAGAAGCAAAC+TGG | - | chr1.1:61533851-61533870 | MS.gene056054:CDS | 40.0% | |
| ! | ACTTCGAAGGTGTAGTTTAC+CGG | + | chr1.1:61532656-61532675 | None:intergenic | 40.0% |
| ! | ATTCTGATGCTTTTGCAACC+CGG | + | chr1.1:61532538-61532557 | None:intergenic | 40.0% |
| ! | TGAGTTGGCTAAGAAGAAAG+CGG | - | chr1.1:61533270-61533289 | MS.gene056054:intron | 40.0% |
| ! | TGCATGGACTAAACTAACCT+TGG | + | chr1.1:61533455-61533474 | None:intergenic | 40.0% |
| AAGACAGAACAGGATTGACC+GGG | + | chr1.1:61532623-61532642 | None:intergenic | 45.0% | |
| AGTATTTGGACTAACGGTGG+CGG | - | chr1.1:61534192-61534211 | MS.gene056054:CDS | 45.0% | |
| ATGTTACCACCTGCTTGGAT+GGG | - | chr1.1:61534309-61534328 | MS.gene056054:CDS | 45.0% | |
| ATTAACGCTGAGGCAATACG+CGG | - | chr1.1:61534153-61534172 | MS.gene056054:CDS | 45.0% | |
| CAAGACAGAACAGGATTGAC+CGG | + | chr1.1:61532624-61532643 | None:intergenic | 45.0% | |
| CTAAGGGAAGCTGAGTTACA+AGG | - | chr1.1:61533346-61533365 | MS.gene056054:intron | 45.0% | |
| CTTTCCTTATCATCCACACG+AGG | + | chr1.1:61532737-61532756 | None:intergenic | 45.0% | |
| GAAGGTTATTGCGATGCAGA+GGG | - | chr1.1:61533156-61533175 | MS.gene056054:intron | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | - | chr1.1:61533234-61533253 | MS.gene056054:intron | 45.0% | |
| GCAAAGAAAAAGGAGGCAGA+GGG | - | chr1.1:61534003-61534022 | MS.gene056054:CDS | 45.0% | |
| GGAAGCCAAGAATCAAGCTA+GGG | - | chr1.1:61533039-61533058 | MS.gene056054:intron | 45.0% | |
| GGCTCAAGCTAATTCTGAGT+TGG | - | chr1.1:61533255-61533274 | MS.gene056054:intron | 45.0% | |
| GTAACATCTCCGTTTGCTCA+TGG | + | chr1.1:61534296-61534315 | None:intergenic | 45.0% | |
| GTCAACCCTAGCTTGATTCT+TGG | + | chr1.1:61533047-61533066 | None:intergenic | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | - | chr1.1:61533067-61533086 | MS.gene056054:intron | 45.0% | |
| TAAGACCGTCCATGAGCAAA+CGG | - | chr1.1:61534284-61534303 | MS.gene056054:CDS | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr1.1:61533909-61533928 | MS.gene056054:CDS | 45.0% | |
| TGACACTTGGACAAGCTCAA+GGG | - | chr1.1:61534031-61534050 | MS.gene056054:CDS | 45.0% | |
| TGCAAAGAAAAAGGAGGCAG+AGG | - | chr1.1:61534002-61534021 | MS.gene056054:CDS | 45.0% | |
| TGGAAGCCAAGAATCAAGCT+AGG | - | chr1.1:61533038-61533057 | MS.gene056054:intron | 45.0% | |
| TGGACGGTCTTAAACAAAGG+TGG | + | chr1.1:61534276-61534295 | None:intergenic | 45.0% | |
| TTTGGGTCAAAAGACGCAGA+TGG | - | chr1.1:61533018-61533037 | MS.gene056054:intron | 45.0% | |
| ! | TGATTGGAGTGTCTAGCATG+CGG | + | chr1.1:61532788-61532807 | None:intergenic | 45.0% |
| !! | GATAATGGTGAAGGTGCCAT+GGG | - | chr1.1:61534216-61534235 | MS.gene056054:CDS | 45.0% |
| AAGACAGCGGGGAGAACAAA+AGG | + | chr1.1:61532704-61532723 | None:intergenic | 50.0% | |
| AGGACCGATAGTGAAGACAG+CGG | + | chr1.1:61532717-61532736 | None:intergenic | 50.0% | |
| AGGTGTAGTTTACCGGTGAG+AGG | + | chr1.1:61532649-61532668 | None:intergenic | 50.0% | |
| CATCTCCGTTTGCTCATGGA+CGG | + | chr1.1:61534292-61534311 | None:intergenic | 50.0% | |
| CGAAGGTTATTGCGATGCAG+AGG | - | chr1.1:61533155-61533174 | MS.gene056054:intron | 50.0% | |
| CGGTCAATCCTGTTCTGTCT+TGG | - | chr1.1:61532622-61532641 | MS.gene056054:CDS | 50.0% | |
| GAAAACCTCCTCCATCGTCA+TGG | + | chr1.1:61532867-61532886 | None:intergenic | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | - | chr1.1:61533048-61533067 | MS.gene056054:intron | 50.0% | |
| GACACTTGGACAAGCTCAAG+GGG | - | chr1.1:61534032-61534051 | MS.gene056054:CDS | 50.0% | |
| GATGTTACCACCTGCTTGGA+TGG | - | chr1.1:61534308-61534327 | MS.gene056054:CDS | 50.0% | |
| GCAGAGGGAATTGTGACACT+TGG | - | chr1.1:61534018-61534037 | MS.gene056054:CDS | 50.0% | |
| GTGACACTTGGACAAGCTCA+AGG | - | chr1.1:61534030-61534049 | MS.gene056054:CDS | 50.0% | |
| TGAGAGGTCCAAGACAGAAC+AGG | + | chr1.1:61532633-61532652 | None:intergenic | 50.0% | |
| TGGCTAAGAAGAAAGCGGCT+TGG | - | chr1.1:61533275-61533294 | MS.gene056054:intron | 50.0% | |
| TTATTGCGATGCAGAGGGCT+GGG | - | chr1.1:61533161-61533180 | MS.gene056054:intron | 50.0% | |
| TTCTGTCTTGGACCTCTCAC+CGG | - | chr1.1:61532634-61532653 | MS.gene056054:CDS | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCG+CGG | - | chr1.1:61532977-61532996 | MS.gene056054:CDS | 50.0% |
| ! | ACGATGGAGGAGGTTTTCCA+AGG | - | chr1.1:61532869-61532888 | MS.gene056054:CDS | 50.0% |
| ! | GGCAGAAGCACAGAAAGCAT+CGG | - | chr1.1:61533930-61533949 | MS.gene056054:CDS | 50.0% |
| ! | TCTTGCTGCTTCCATGACGA+TGG | - | chr1.1:61532853-61532872 | MS.gene056054:CDS | 50.0% |
| !! | CGATAATGGTGAAGGTGCCA+TGG | - | chr1.1:61534215-61534234 | MS.gene056054:CDS | 50.0% |
| !! | GAAGAAGGCTGTGGCTCTAA+GGG | - | chr1.1:61533330-61533349 | MS.gene056054:intron | 50.0% |
| AAGACTCCCATCCAAGCAGG+TGG | + | chr1.1:61534318-61534337 | None:intergenic | 55.0% | |
| CGGAGATGTTACCACCTGCT+TGG | - | chr1.1:61534304-61534323 | MS.gene056054:CDS | 55.0% | |
| CGGTCCTCGTGTGGATGATA+AGG | - | chr1.1:61532730-61532749 | MS.gene056054:CDS | 55.0% | |
| CTCCCCGCTGTCTTCACTAT+CGG | - | chr1.1:61532710-61532729 | MS.gene056054:CDS | 55.0% | |
| CTTCACTATCGGTCCTCGTG+TGG | - | chr1.1:61532721-61532740 | MS.gene056054:CDS | 55.0% | |
| GACCGATAGTGAAGACAGCG+GGG | + | chr1.1:61532715-61532734 | None:intergenic | 55.0% | |
| GGACCGATAGTGAAGACAGC+GGG | + | chr1.1:61532716-61532735 | None:intergenic | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | - | chr1.1:61533160-61533179 | MS.gene056054:intron | 55.0% | |
| TATTGCGATGCAGAGGGCTG+GGG | - | chr1.1:61533162-61533181 | MS.gene056054:intron | 55.0% | |
| TGCTTCCATGACGATGGAGG+AGG | - | chr1.1:61532859-61532878 | MS.gene056054:CDS | 55.0% | |
| ! | ACTAACGGTGGCGGCGATAA+TGG | - | chr1.1:61534201-61534220 | MS.gene056054:CDS | 55.0% |
| ! | CGAAGAAGGCTGTGGCTCTA+AGG | - | chr1.1:61533329-61533348 | MS.gene056054:intron | 55.0% |
| ! | GAAGAAAGCGGCTTGGACCA+AGG | - | chr1.1:61533282-61533301 | MS.gene056054:intron | 55.0% |
| ! | TGCTGCTTCCATGACGATGG+AGG | - | chr1.1:61532856-61532875 | MS.gene056054:CDS | 55.0% |
| AGTCGAGGCGAAGAAGGCTG+TGG | - | chr1.1:61533321-61533340 | MS.gene056054:intron | 60.0% | |
| GGCAAGACTCCCATCCAAGC+AGG | + | chr1.1:61534321-61534340 | None:intergenic | 60.0% | |
| GGCTGAAGTCGAGGCGAAGA+AGG | - | chr1.1:61533315-61533334 | MS.gene056054:intron | 60.0% | |
| ! | GAAAGCGGCTTGGACCAAGG+CGG | - | chr1.1:61533285-61533304 | MS.gene056054:intron | 60.0% |
| ! | GGTGGCGGCGATAATGGTGA+AGG | - | chr1.1:61534207-61534226 | MS.gene056054:CDS | 60.0% |
| GCTGGGGAGGGTGACAAGGA+GGG | - | chr1.1:61533178-61533197 | MS.gene056054:intron | 65.0% | |
| GGCTCAGGTGGCTGAAGTCG+AGG | - | chr1.1:61533306-61533325 | MS.gene056054:intron | 65.0% | |
| TTCAGCCACCTGAGCCGCCT+TGG | + | chr1.1:61533302-61533321 | None:intergenic | 65.0% | |
| TTGGACCAAGGCGGCTCAGG+TGG | - | chr1.1:61533294-61533313 | MS.gene056054:intron | 65.0% | |
| GAGGGCTGGGGAGGGTGACA+AGG | - | chr1.1:61533174-61533193 | MS.gene056054:intron | 70.0% | |
| GCGATGCAGAGGGCTGGGGA+GGG | - | chr1.1:61533166-61533185 | MS.gene056054:intron | 70.0% | |
| GGCTGGGGAGGGTGACAAGG+AGG | - | chr1.1:61533177-61533196 | MS.gene056054:intron | 70.0% | |
| GGCTTGGACCAAGGCGGCTC+AGG | - | chr1.1:61533291-61533310 | MS.gene056054:intron | 70.0% | |
| TGCGATGCAGAGGGCTGGGG+AGG | - | chr1.1:61533165-61533184 | MS.gene056054:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 61532524 | 61534356 | 61532524 | ID=MS.gene056054 |
| chr1.1 | mRNA | 61532524 | 61534356 | 61532524 | ID=MS.gene056054.t1;Parent=MS.gene056054 |
| chr1.1 | exon | 61533424 | 61534356 | 61533424 | ID=MS.gene056054.t1.exon1;Parent=MS.gene056054.t1 |
| chr1.1 | CDS | 61533424 | 61534356 | 61533424 | ID=cds.MS.gene056054.t1;Parent=MS.gene056054.t1 |
| chr1.1 | exon | 61532524 | 61533024 | 61532524 | ID=MS.gene056054.t1.exon2;Parent=MS.gene056054.t1 |
| chr1.1 | CDS | 61532524 | 61533024 | 61532524 | ID=cds.MS.gene056054.t1;Parent=MS.gene056054.t1 |
| Gene Sequence |
| Protein sequence |
