Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39934.t1 | XP_013468625.1 | 96 | 478 | 15 | 1 | 1 | 478 | 1 | 474 | 1.30E-182 | 649.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39934.t1 | D2XNQ8 | 92.7 | 478 | 35 | 0 | 1 | 478 | 1 | 478 | 1.0e-180 | 634.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39934.t1 | A0A072VLE3 | 96.0 | 478 | 15 | 1 | 1 | 478 | 1 | 474 | 9.1e-183 | 649.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39934.t1 | MTR_1g073400 | 96.862 | 478 | 11 | 1 | 1 | 478 | 1 | 474 | 0.0 | 939 |
| MS.gene39934.t1 | MTR_3g106480 | 92.259 | 478 | 37 | 0 | 1 | 478 | 1 | 478 | 0.0 | 905 |
| MS.gene39934.t1 | MTR_1g115145 | 94.363 | 479 | 20 | 3 | 1 | 478 | 1 | 473 | 0.0 | 885 |
| MS.gene39934.t1 | MTR_1g071130 | 91.423 | 478 | 12 | 2 | 1 | 478 | 1 | 449 | 0.0 | 880 |
| MS.gene39934.t1 | MTR_3g106420 | 92.050 | 478 | 38 | 0 | 1 | 478 | 3 | 480 | 0.0 | 875 |
| MS.gene39934.t1 | MTR_3g106485 | 92.050 | 478 | 34 | 2 | 1 | 478 | 1 | 474 | 0.0 | 869 |
| MS.gene39934.t1 | MTR_3g106430 | 92.034 | 477 | 34 | 2 | 1 | 477 | 1 | 473 | 0.0 | 837 |
| MS.gene39934.t1 | MTR_1g083190 | 88.912 | 478 | 45 | 1 | 1 | 478 | 3 | 472 | 0.0 | 833 |
| MS.gene39934.t1 | MTR_3g106470 | 80.922 | 477 | 35 | 2 | 1 | 477 | 32 | 452 | 0.0 | 734 |
| MS.gene39934.t1 | MTR_8g063830 | 80.645 | 465 | 49 | 5 | 1 | 464 | 1 | 425 | 0.0 | 671 |
| MS.gene39934.t1 | MTR_3g065540 | 65.217 | 115 | 13 | 1 | 40 | 154 | 14 | 101 | 5.07e-41 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39934.t1 | AT5G25260 | 74.895 | 474 | 107 | 2 | 1 | 474 | 1 | 462 | 0.0 | 734 |
| MS.gene39934.t1 | AT5G25250 | 75.476 | 473 | 102 | 2 | 1 | 473 | 1 | 459 | 0.0 | 728 |
| MS.gene39934.t1 | AT5G64870 | 71.186 | 472 | 125 | 1 | 2 | 473 | 3 | 463 | 0.0 | 656 |
Find 115 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATATTTCTCATATTT+AGG | 0.103686 | 1.4:-58259907 | MS.gene39934:CDS |
| CAACTCGAACTAAACCAATT+TGG | 0.161300 | 1.4:-58259979 | MS.gene39934:CDS |
| TGTAAATCAATAACCCAAAT+TGG | 0.249573 | 1.4:+58259965 | None:intergenic |
| TTGAACCTAAGATTAGTATT+TGG | 0.251111 | 1.4:-58259001 | MS.gene39934:CDS |
| CGGAATAACCGAAGGTTCTA+TGG | 0.252432 | 1.4:-58258955 | MS.gene39934:CDS |
| CTGCTAAAGCTGTGGCTCTA+AGG | 0.272737 | 1.4:-58259579 | MS.gene39934:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.295084 | 1.4:-58259074 | MS.gene39934:CDS |
| GTGAAGTTGGTTCGAAATCT+AGG | 0.296293 | 1.4:-58259819 | MS.gene39934:CDS |
| TTCAGGTACAAGAGGCTAAC+TGG | 0.300124 | 1.4:-58259328 | MS.gene39934:intron |
| ATGAATATTTCTCATATTTA+GGG | 0.305111 | 1.4:-58259906 | MS.gene39934:CDS |
| AACTCGAACTAAACCAATTT+GGG | 0.307435 | 1.4:-58259978 | MS.gene39934:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.318195 | 1.4:+58258996 | None:intergenic |
| ACAAGGAGGGATTTAGAGTT+AGG | 0.330276 | 1.4:-58259717 | MS.gene39934:CDS |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.344753 | 1.4:-58258862 | MS.gene39934:CDS |
| CTCCCCGCTGTCTTCACAAT+TGG | 0.350504 | 1.4:-58260198 | MS.gene39934:CDS |
| AAGATTAGTATTTGGACTAA+TGG | 0.361897 | 1.4:-58258993 | MS.gene39934:CDS |
| GAAACGACTATACAGCTCTA+AGG | 0.371905 | 1.4:-58259094 | MS.gene39934:CDS |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 1.4:-58259944 | MS.gene39934:CDS |
| AAGTTTGATGTCTTCGATTC+CGG | 0.389998 | 1.4:+58260332 | None:intergenic |
| GATGTCTTCGATTCCGGCTC+CGG | 0.392612 | 1.4:+58260338 | None:intergenic |
| TCCGAGTACCTGGTGATAAC+CGG | 0.437519 | 1.4:-58260357 | MS.gene39934:CDS |
| TTTCATACCCATAGAACCTT+CGG | 0.446868 | 1.4:+58258947 | None:intergenic |
| TCAAACTTGCAAAGAAATCA+TGG | 0.455886 | 1.4:-58260317 | MS.gene39934:CDS |
| AATCAAAATCAACAATGTAC+AGG | 0.458619 | 1.4:-58260392 | None:intergenic |
| AGCAATTCTGTATGAGAAGA+AGG | 0.462456 | 1.4:-58259276 | MS.gene39934:CDS |
| AAATCAGTTTAGCGTATTTG+AGG | 0.472961 | 1.4:+58260148 | None:intergenic |
| TAAACTCTCAAATCACGTTA+AGG | 0.484828 | 1.4:-58260115 | MS.gene39934:CDS |
| TTTAGGGCAAAAGACGCAAA+TGG | 0.491891 | 1.4:-58259890 | MS.gene39934:CDS |
| AAGACTGTCCATGAGCAAAC+AGG | 0.492575 | 1.4:-58258885 | MS.gene39934:CDS |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.492852 | 1.4:-58258861 | MS.gene39934:CDS |
| GAAGAAAGCAGCTTGGACTA+AGG | 0.496411 | 1.4:-58259626 | MS.gene39934:CDS |
| TCCTTTGAAAACCTCTTCCA+TGG | 0.499133 | 1.4:+58260038 | None:intergenic |
| TGGAAGCAGCAAATCAAGCT+AGG | 0.499980 | 1.4:-58259870 | MS.gene39934:CDS |
| TGCTAAAGCTGTGGCTCTAA+GGG | 0.501192 | 1.4:-58259578 | MS.gene39934:CDS |
| GGACCAATTGTGAAGACAGC+GGG | 0.501529 | 1.4:+58260195 | None:intergenic |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.503335 | 1.4:-58258866 | MS.gene39934:CDS |
| CACGTTAAGGAACTCGTTCA+AGG | 0.504618 | 1.4:-58260102 | MS.gene39934:CDS |
| TGCTTCGATGACCATGGAAG+AGG | 0.508530 | 1.4:-58260049 | MS.gene39934:CDS |
| AGCAAAAGCATCCGAGTACC+TGG | 0.509436 | 1.4:-58260367 | MS.gene39934:CDS |
| CAAAAGTTATTGCGATGCAG+AGG | 0.509445 | 1.4:-58259753 | MS.gene39934:CDS |
| GCTAAGATGAAAGGTGAAGT+TGG | 0.511842 | 1.4:-58259832 | MS.gene39934:CDS |
| GTTATTGCGATGCAGAGGGC+TGG | 0.513050 | 1.4:-58259748 | MS.gene39934:CDS |
| TAGAGTTAGGACTGAAGTGA+AGG | 0.517399 | 1.4:-58259704 | MS.gene39934:CDS |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 1.4:+58258877 | None:intergenic |
| ATGGGTATGAAAGAGGTTGC+TGG | 0.526365 | 1.4:-58258936 | MS.gene39934:CDS |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 1.4:-58259931 | MS.gene39934:CDS |
| GGCTCAAGTGGCTGAAGTCG+AGG | 0.533715 | 1.4:-58259602 | MS.gene39934:CDS |
| ATTAGTATTTGGACTAATGG+AGG | 0.534214 | 1.4:-58258990 | MS.gene39934:CDS |
| TGGTGGCATGTTTCAAGAGA+TGG | 0.539247 | 1.4:-58259054 | MS.gene39934:CDS |
| TCCGGTTATCACCAGGTACT+CGG | 0.539596 | 1.4:+58260356 | None:intergenic |
| GGCTGAGGCTAATTCTGAGT+TGG | 0.544080 | 1.4:-58259653 | MS.gene39934:CDS |
| GCAGAGGGGATTGTGACACT+TGG | 0.546780 | 1.4:-58259161 | MS.gene39934:CDS |
| CACCGTCTTCGACCTCTCAC+CGG | 0.548854 | 1.4:-58260274 | MS.gene39934:CDS |
| GATAAGGCTCCCATCCAAGC+AGG | 0.550974 | 1.4:+58258852 | None:intergenic |
| TTCCGGCTCCGGTTATCACC+AGG | 0.552313 | 1.4:+58260349 | None:intergenic |
| AAGAGAGGCTGAAGTGGCTG+AGG | 0.558698 | 1.4:-58259668 | MS.gene39934:CDS |
| TTGGACTAAGGCGGCTCAAG+TGG | 0.561126 | 1.4:-58259614 | MS.gene39934:CDS |
| TGCGAATGTTAAGCAATTGG+TGG | 0.563120 | 1.4:-58259941 | MS.gene39934:CDS |
| CTCAACCTCACCTTGCAACT+CGG | 0.566348 | 1.4:+58259552 | None:intergenic |
| TACCTGGTGATAACCGGAGC+CGG | 0.568923 | 1.4:-58260351 | MS.gene39934:CDS |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 1.4:-58259116 | MS.gene39934:CDS |
| CCTCGCTGCTTCGATGACCA+TGG | 0.570615 | 1.4:-58260055 | MS.gene39934:CDS |
| ACTTCGAAGGTATAGTTCAC+CGG | 0.571447 | 1.4:+58260255 | None:intergenic |
| TGAAGTTGGTTCGAAATCTA+GGG | 0.572755 | 1.4:-58259818 | MS.gene39934:CDS |
| AAGACGGTGCAAGATTGACC+AGG | 0.574032 | 1.4:+58260288 | None:intergenic |
| AGGTATAGTTCACCGGTGAG+AGG | 0.574045 | 1.4:+58260262 | None:intergenic |
| AGTTGCAAGGTGAGGTTGAG+AGG | 0.575856 | 1.4:-58259549 | MS.gene39934:CDS |
| AGGTTCTATGGGTATGAAAG+AGG | 0.575883 | 1.4:-58258943 | MS.gene39934:CDS |
| TCAGGTACAAGAGGCTAACT+GGG | 0.577630 | 1.4:-58259327 | MS.gene39934:intron |
| GGAATAACCGAAGGTTCTAT+GGG | 0.578747 | 1.4:-58258954 | MS.gene39934:CDS |
| AAGACAGCGGGGAGAACGAA+AGG | 0.579924 | 1.4:+58260207 | None:intergenic |
| GGCAGAAGCACAGAAAGCAT+TGG | 0.582553 | 1.4:-58259249 | MS.gene39934:CDS |
| GTGACACTTGGGAATGCTCA+AGG | 0.583871 | 1.4:-58259149 | MS.gene39934:CDS |
| ATTTGAGAGTTTATCATGAG+GGG | 0.586830 | 1.4:+58260125 | None:intergenic |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 1.4:-58259674 | MS.gene39934:CDS |
| CTAAGGGAAGCCGAGTTGCA+AGG | 0.593610 | 1.4:-58259562 | MS.gene39934:CDS |
| GATTTGAGAGTTTATCATGA+GGG | 0.596952 | 1.4:+58260124 | None:intergenic |
| CAGAGGGGATTGTGACACTT+GGG | 0.598815 | 1.4:-58259160 | MS.gene39934:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 1.4:-58259270 | MS.gene39934:CDS |
| ACTCATGGCTTGAACTTCGA+AGG | 0.601319 | 1.4:+58260242 | None:intergenic |
| TGGTTTACTTCAGGTACAAG+AGG | 0.603022 | 1.4:-58259336 | MS.gene39934:intron |
| AAACGACTATACAGCTCTAA+GGG | 0.604913 | 1.4:-58259093 | MS.gene39934:CDS |
| AATGGAGGTGACAATGGAGG+CGG | 0.607583 | 1.4:-58258975 | MS.gene39934:CDS |
| TGGCGAAGAAGAAAGCAGCT+TGG | 0.608119 | 1.4:-58259633 | MS.gene39934:CDS |
| TGGACTAATGGAGGTGACAA+TGG | 0.609237 | 1.4:-58258981 | MS.gene39934:CDS |
| GCTGGAGAGAGTGACAAGGA+GGG | 0.609527 | 1.4:-58259730 | MS.gene39934:CDS |
| GGAAGCAGCAAATCAAGCTA+GGG | 0.610474 | 1.4:-58259869 | MS.gene39934:CDS |
| CTCGTTCAAGGAATCATCGA+AGG | 0.613655 | 1.4:-58260090 | MS.gene39934:CDS |
| GTGTCAGAAGCTAAGATGAA+AGG | 0.614706 | 1.4:-58259841 | MS.gene39934:CDS |
| GGCTAAGATTAATGCTGAGG+CGG | 0.618298 | 1.4:-58259033 | MS.gene39934:CDS |
| TCATGGACAGTCTTAAACAA+AGG | 0.619848 | 1.4:+58258894 | None:intergenic |
| AAAAGTTATTGCGATGCAGA+GGG | 0.623321 | 1.4:-58259752 | MS.gene39934:CDS |
| ATTAATGCTGAGGCGGTATG+CGG | 0.624841 | 1.4:-58259026 | MS.gene39934:CDS |
| GGCTGGAGAGAGTGACAAGG+AGG | 0.627665 | 1.4:-58259731 | MS.gene39934:CDS |
| CACCGGTGAGAGGTCGAAGA+CGG | 0.628279 | 1.4:+58260272 | None:intergenic |
| ATCAAAATCAACAATGTACA+GGG | 0.634755 | 1.4:-58260391 | None:intergenic |
| TATGAGAAATATTCATGACC+AGG | 0.636387 | 1.4:+58259913 | None:intergenic |
| GATGGCTAAGATTAATGCTG+AGG | 0.642407 | 1.4:-58259036 | MS.gene39934:CDS |
| TAGTGTTGAGTATGAAACCA+AGG | 0.644971 | 1.4:-58259473 | MS.gene39934:intron |
| GAAAGCAGCTTGGACTAAGG+CGG | 0.646507 | 1.4:-58259623 | MS.gene39934:CDS |
| GAGGGCTGGAGAGAGTGACA+AGG | 0.646522 | 1.4:-58259734 | MS.gene39934:CDS |
| GGAAGCCGAGTTGCAAGGTG+AGG | 0.648282 | 1.4:-58259557 | MS.gene39934:CDS |
| TGGACAGTCTTAAACAAAGG+TGG | 0.655933 | 1.4:+58258897 | None:intergenic |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 1.4:-58259071 | MS.gene39934:CDS |
| AGTCGAGGCTGCTAAAGCTG+TGG | 0.666475 | 1.4:-58259587 | MS.gene39934:CDS |
| TGATTTGAGAGTTTATCATG+AGG | 0.667589 | 1.4:+58260123 | None:intergenic |
| GTTGGTTCGAAATCTAGGGA+AGG | 0.671440 | 1.4:-58259814 | MS.gene39934:CDS |
| AAGGCTCCCATCCAAGCAGG+AGG | 0.676037 | 1.4:+58258855 | None:intergenic |
| ACTAATGGAGGTGACAATGG+AGG | 0.677352 | 1.4:-58258978 | MS.gene39934:CDS |
| AATGGAGGCGGAATAACCGA+AGG | 0.683343 | 1.4:-58258963 | MS.gene39934:CDS |
| CTTTCGTCATCGTCAACACG+AGG | 0.690352 | 1.4:+58260174 | None:intergenic |
| GACCAATTGTGAAGACAGCG+GGG | 0.714278 | 1.4:+58260196 | None:intergenic |
| AGACGGTGCAAGATTGACCA+GGG | 0.716272 | 1.4:+58260289 | None:intergenic |
| AGGACCAATTGTGAAGACAG+CGG | 0.726189 | 1.4:+58260194 | None:intergenic |
| CCATGGTCATCGAAGCAGCG+AGG | 0.728643 | 1.4:+58260055 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAATATTTCTCATATTTA+GGG | - | chr1.4:58259308-58259327 | MS.gene39934:CDS | 15.0% |
| !!! | AATGTTTATTTTTTAAGTAC+TGG | - | chr1.4:58259842-58259861 | MS.gene39934:CDS | 15.0% |
| !! | CATGAATATTTCTCATATTT+AGG | - | chr1.4:58259307-58259326 | MS.gene39934:CDS | 20.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | - | chr1.4:58260221-58260240 | MS.gene39934:CDS | 25.0% |
| ! | ACTATATGCAAAGAAAAAAG+AGG | - | chr1.4:58260031-58260050 | MS.gene39934:CDS | 25.0% |
| ! | TGTAAATCAATAACCCAAAT+TGG | + | chr1.4:58259252-58259271 | None:intergenic | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | + | chr1.4:58260221-58260240 | None:intergenic | 25.0% |
| ! | TTGAACCTAAGATTAGTATT+TGG | - | chr1.4:58260213-58260232 | MS.gene39934:CDS | 25.0% |
| AAATCAGTTTAGCGTATTTG+AGG | + | chr1.4:58259069-58259088 | None:intergenic | 30.0% | |
| AACTCGAACTAAACCAATTT+GGG | - | chr1.4:58259236-58259255 | MS.gene39934:CDS | 30.0% | |
| AAGAAGGAGTTATATTTGCA+TGG | + | chr1.4:58259772-58259791 | None:intergenic | 30.0% | |
| ATTAGTATTTGGACTAATGG+AGG | - | chr1.4:58260224-58260243 | MS.gene39934:CDS | 30.0% | |
| ATTTGAGAGTTTATCATGAG+GGG | + | chr1.4:58259092-58259111 | None:intergenic | 30.0% | |
| GATTTGAGAGTTTATCATGA+GGG | + | chr1.4:58259093-58259112 | None:intergenic | 30.0% | |
| TAAACTCTCAAATCACGTTA+AGG | - | chr1.4:58259099-58259118 | MS.gene39934:CDS | 30.0% | |
| TATGAGAAATATTCATGACC+AGG | + | chr1.4:58259304-58259323 | None:intergenic | 30.0% | |
| TCAAACTTGCAAAGAAATCA+TGG | - | chr1.4:58258897-58258916 | MS.gene39934:CDS | 30.0% | |
| TGATTTGAGAGTTTATCATG+AGG | + | chr1.4:58259094-58259113 | None:intergenic | 30.0% | |
| ! | AGGGATTACTTGATGATAAA+TGG | - | chr1.4:58260140-58260159 | MS.gene39934:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr1.4:58260143-58260162 | MS.gene39934:CDS | 30.0% |
| !! | TTAAGTACTGGTTGAAATTC+TGG | - | chr1.4:58259854-58259873 | MS.gene39934:CDS | 30.0% |
| AAAAGTTATTGCGATGCAGA+GGG | - | chr1.4:58259462-58259481 | MS.gene39934:intron | 35.0% | |
| AAGTTTGATGTCTTCGATTC+CGG | + | chr1.4:58258885-58258904 | None:intergenic | 35.0% | |
| AATTCTGGATGGTTTACTTC+AGG | - | chr1.4:58259869-58259888 | MS.gene39934:CDS | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | - | chr1.4:58259938-58259957 | MS.gene39934:CDS | 35.0% | |
| CAACTCGAACTAAACCAATT+TGG | - | chr1.4:58259235-58259254 | MS.gene39934:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | - | chr1.4:58259270-58259289 | MS.gene39934:CDS | 35.0% | |
| TCATGGACAGTCTTAAACAA+AGG | + | chr1.4:58260323-58260342 | None:intergenic | 35.0% | |
| TTTCATACCCATAGAACCTT+CGG | + | chr1.4:58260270-58260289 | None:intergenic | 35.0% | |
| ! | AAACGACTATACAGCTCTAA+GGG | - | chr1.4:58260121-58260140 | MS.gene39934:CDS | 35.0% |
| ! | AAGAAATCATGGATTTTCCC+TGG | - | chr1.4:58258908-58258927 | MS.gene39934:CDS | 35.0% |
| ! | ATATTTGCATGGACTAACCT+TGG | + | chr1.4:58259761-58259780 | None:intergenic | 35.0% |
| ! | TAGTGTTGAGTATGAAACCA+AGG | - | chr1.4:58259741-58259760 | MS.gene39934:CDS | 35.0% |
| ! | TTAAGAGCTTTTGTCGGATA+AGG | + | chr1.4:58260381-58260400 | None:intergenic | 35.0% |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | - | chr1.4:58259531-58259550 | MS.gene39934:CDS | 35.0% |
| !! | TGAAGTTGGTTCGAAATCTA+GGG | - | chr1.4:58259396-58259415 | MS.gene39934:intron | 35.0% |
| AGGTTCTATGGGTATGAAAG+AGG | - | chr1.4:58260271-58260290 | MS.gene39934:CDS | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | - | chr1.4:58260098-58260117 | MS.gene39934:CDS | 40.0% | |
| CAAAAGTTATTGCGATGCAG+AGG | - | chr1.4:58259461-58259480 | MS.gene39934:intron | 40.0% | |
| CAAAGAAAAAAGAGGCAGAG+GGG | - | chr1.4:58260039-58260058 | MS.gene39934:CDS | 40.0% | |
| GAAACGACTATACAGCTCTA+AGG | - | chr1.4:58260120-58260139 | MS.gene39934:CDS | 40.0% | |
| GATGGCTAAGATTAATGCTG+AGG | - | chr1.4:58260178-58260197 | MS.gene39934:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+GGG | - | chr1.4:58260038-58260057 | MS.gene39934:CDS | 40.0% | |
| GCTAAGATGAAAGGTGAAGT+TGG | - | chr1.4:58259382-58259401 | MS.gene39934:intron | 40.0% | |
| GGAATAACCGAAGGTTCTAT+GGG | - | chr1.4:58260260-58260279 | MS.gene39934:CDS | 40.0% | |
| GTGTCAGAAGCTAAGATGAA+AGG | - | chr1.4:58259373-58259392 | MS.gene39934:intron | 40.0% | |
| TAGAGTTAGGACTGAAGTGA+AGG | - | chr1.4:58259510-58259529 | MS.gene39934:CDS | 40.0% | |
| TGCAAAGAAAAAAGAGGCAG+AGG | - | chr1.4:58260037-58260056 | MS.gene39934:CDS | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | - | chr1.4:58259273-58259292 | MS.gene39934:CDS | 40.0% | |
| TGGACAGTCTTAAACAAAGG+TGG | + | chr1.4:58260320-58260339 | None:intergenic | 40.0% | |
| TGGTTTACTTCAGGTACAAG+AGG | - | chr1.4:58259878-58259897 | MS.gene39934:CDS | 40.0% | |
| ! | ACAAGGAGGGATTTAGAGTT+AGG | - | chr1.4:58259497-58259516 | MS.gene39934:CDS | 40.0% |
| ! | ACCATGGAAGAGGTTTTCAA+AGG | - | chr1.4:58259175-58259194 | MS.gene39934:CDS | 40.0% |
| ! | ACTTCGAAGGTATAGTTCAC+CGG | + | chr1.4:58258962-58258981 | None:intergenic | 40.0% |
| ! | GAGAACGAAAGGCAGTTTTT+CGG | + | chr1.4:58258999-58259018 | None:intergenic | 40.0% |
| ! | TCCTTTGAAAACCTCTTCCA+TGG | + | chr1.4:58259179-58259198 | None:intergenic | 40.0% |
| ! | TTTAGGGCAAAAGACGCAAA+TGG | - | chr1.4:58259324-58259343 | MS.gene39934:CDS | 40.0% |
| !! | GTACTGGTTGAAATTCTGGA+TGG | - | chr1.4:58259858-58259877 | MS.gene39934:CDS | 40.0% |
| !! | GTGAAGTTGGTTCGAAATCT+AGG | - | chr1.4:58259395-58259414 | MS.gene39934:intron | 40.0% |
| AAGACTGTCCATGAGCAAAC+AGG | - | chr1.4:58260329-58260348 | MS.gene39934:CDS | 45.0% | |
| ACTAATGGAGGTGACAATGG+AGG | - | chr1.4:58260236-58260255 | MS.gene39934:CDS | 45.0% | |
| ACTCATGGCTTGAACTTCGA+AGG | + | chr1.4:58258975-58258994 | None:intergenic | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | + | chr1.4:58259023-58259042 | None:intergenic | 45.0% | |
| ATGGGTATGAAAGAGGTTGC+TGG | - | chr1.4:58260278-58260297 | MS.gene39934:CDS | 45.0% | |
| ATTAATGCTGAGGCGGTATG+CGG | - | chr1.4:58260188-58260207 | MS.gene39934:CDS | 45.0% | |
| CACGTTAAGGAACTCGTTCA+AGG | - | chr1.4:58259112-58259131 | MS.gene39934:CDS | 45.0% | |
| CGGAATAACCGAAGGTTCTA+TGG | - | chr1.4:58260259-58260278 | MS.gene39934:CDS | 45.0% | |
| CTCGTTCAAGGAATCATCGA+AGG | - | chr1.4:58259124-58259143 | MS.gene39934:CDS | 45.0% | |
| GAAGAAAGCAGCTTGGACTA+AGG | - | chr1.4:58259588-58259607 | MS.gene39934:CDS | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | - | chr1.4:58259540-58259559 | MS.gene39934:CDS | 45.0% | |
| GGAAGCAGCAAATCAAGCTA+GGG | - | chr1.4:58259345-58259364 | MS.gene39934:intron | 45.0% | |
| GGCTAAGATTAATGCTGAGG+CGG | - | chr1.4:58260181-58260200 | MS.gene39934:CDS | 45.0% | |
| TCAGGTACAAGAGGCTAACT+GGG | - | chr1.4:58259887-58259906 | MS.gene39934:CDS | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr1.4:58259944-58259963 | MS.gene39934:CDS | 45.0% | |
| TGGAAGCAGCAAATCAAGCT+AGG | - | chr1.4:58259344-58259363 | MS.gene39934:intron | 45.0% | |
| TGGACTAATGGAGGTGACAA+TGG | - | chr1.4:58260233-58260252 | MS.gene39934:CDS | 45.0% | |
| TGGTGGCATGTTTCAAGAGA+TGG | - | chr1.4:58260160-58260179 | MS.gene39934:CDS | 45.0% | |
| TTCAGGTACAAGAGGCTAAC+TGG | - | chr1.4:58259886-58259905 | MS.gene39934:CDS | 45.0% | |
| !! | GTTGGTTCGAAATCTAGGGA+AGG | - | chr1.4:58259400-58259419 | MS.gene39934:intron | 45.0% |
| !! | TGCTAAAGCTGTGGCTCTAA+GGG | - | chr1.4:58259636-58259655 | MS.gene39934:CDS | 45.0% |
| !! | TAATAATAATAAATAAAAGA+AGG | + | chr1.4:58259788-58259807 | None:intergenic | 5.0% |
| AAGACGGTGCAAGATTGACC+AGG | + | chr1.4:58258929-58258948 | None:intergenic | 50.0% | |
| AATGGAGGCGGAATAACCGA+AGG | - | chr1.4:58260251-58260270 | MS.gene39934:CDS | 50.0% | |
| AATGGAGGTGACAATGGAGG+CGG | - | chr1.4:58260239-58260258 | MS.gene39934:CDS | 50.0% | |
| AGACGGTGCAAGATTGACCA+GGG | + | chr1.4:58258928-58258947 | None:intergenic | 50.0% | |
| AGGTATAGTTCACCGGTGAG+AGG | + | chr1.4:58258955-58258974 | None:intergenic | 50.0% | |
| AGTTGCAAGGTGAGGTTGAG+AGG | - | chr1.4:58259665-58259684 | MS.gene39934:CDS | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | - | chr1.4:58260353-58260372 | MS.gene39934:CDS | 50.0% | |
| CAGAGGGGATTGTGACACTT+GGG | - | chr1.4:58260054-58260073 | MS.gene39934:CDS | 50.0% | |
| CTCAACCTCACCTTGCAACT+CGG | + | chr1.4:58259665-58259684 | None:intergenic | 50.0% | |
| CTTTCGTCATCGTCAACACG+AGG | + | chr1.4:58259043-58259062 | None:intergenic | 50.0% | |
| GAAAGCAGCTTGGACTAAGG+CGG | - | chr1.4:58259591-58259610 | MS.gene39934:CDS | 50.0% | |
| GACCAATTGTGAAGACAGCG+GGG | + | chr1.4:58259021-58259040 | None:intergenic | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | + | chr1.4:58260340-58260359 | None:intergenic | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | + | chr1.4:58259022-58259041 | None:intergenic | 50.0% | |
| GGCTGAGGCTAATTCTGAGT+TGG | - | chr1.4:58259561-58259580 | MS.gene39934:CDS | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | - | chr1.4:58260065-58260084 | MS.gene39934:CDS | 50.0% | |
| TCCGAGTACCTGGTGATAAC+CGG | - | chr1.4:58258857-58258876 | MS.gene39934:CDS | 50.0% | |
| TCCGGTTATCACCAGGTACT+CGG | + | chr1.4:58258861-58258880 | None:intergenic | 50.0% | |
| TGCTTCGATGACCATGGAAG+AGG | - | chr1.4:58259165-58259184 | MS.gene39934:CDS | 50.0% | |
| TGGCGAAGAAGAAAGCAGCT+TGG | - | chr1.4:58259581-58259600 | MS.gene39934:CDS | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | - | chr1.4:58259283-58259302 | MS.gene39934:CDS | 50.0% |
| ! | CTGCTAAAGCTGTGGCTCTA+AGG | - | chr1.4:58259635-58259654 | MS.gene39934:CDS | 50.0% |
| ! | GGCAGAAGCACAGAAAGCAT+TGG | - | chr1.4:58259965-58259984 | MS.gene39934:CDS | 50.0% |
| !! | AGCAAAAGCATCCGAGTACC+TGG | - | chr1.4:58258847-58258866 | MS.gene39934:CDS | 50.0% |
| !! | AGGCAGTTTTTCGGCACTCA+TGG | + | chr1.4:58258990-58259009 | None:intergenic | 50.0% |
| AAGACAGCGGGGAGAACGAA+AGG | + | chr1.4:58259010-58259029 | None:intergenic | 55.0% | |
| AAGAGAGGCTGAAGTGGCTG+AGG | - | chr1.4:58259546-58259565 | MS.gene39934:CDS | 55.0% | |
| AGTCGAGGCTGCTAAAGCTG+TGG | - | chr1.4:58259627-58259646 | MS.gene39934:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | - | chr1.4:58260352-58260371 | MS.gene39934:CDS | 55.0% | |
| CTAAGGGAAGCCGAGTTGCA+AGG | - | chr1.4:58259652-58259671 | MS.gene39934:CDS | 55.0% | |
| CTCCCCGCTGTCTTCACAAT+TGG | - | chr1.4:58259016-58259035 | MS.gene39934:CDS | 55.0% | |
| GATAAGGCTCCCATCCAAGC+AGG | + | chr1.4:58260365-58260384 | None:intergenic | 55.0% | |
| GATGTCTTCGATTCCGGCTC+CGG | + | chr1.4:58258879-58258898 | None:intergenic | 55.0% | |
| GCAGAGGGGATTGTGACACT+TGG | - | chr1.4:58260053-58260072 | MS.gene39934:CDS | 55.0% | |
| GCTGGAGAGAGTGACAAGGA+GGG | - | chr1.4:58259484-58259503 | MS.gene39934:CDS | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | - | chr1.4:58259466-58259485 | MS.gene39934:intron | 55.0% | |
| TACCTGGTGATAACCGGAGC+CGG | - | chr1.4:58258863-58258882 | MS.gene39934:CDS | 55.0% | |
| TTGGACTAAGGCGGCTCAAG+TGG | - | chr1.4:58259600-58259619 | MS.gene39934:CDS | 55.0% | |
| AAGGCTCCCATCCAAGCAGG+AGG | + | chr1.4:58260362-58260381 | None:intergenic | 60.0% | |
| CACCGGTGAGAGGTCGAAGA+CGG | + | chr1.4:58258945-58258964 | None:intergenic | 60.0% | |
| CACCGTCTTCGACCTCTCAC+CGG | - | chr1.4:58258940-58258959 | MS.gene39934:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | - | chr1.4:58260348-58260367 | MS.gene39934:CDS | 60.0% | |
| CCATGGTCATCGAAGCAGCG+AGG | + | chr1.4:58259162-58259181 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCGATGACCA+TGG | - | chr1.4:58259159-58259178 | MS.gene39934:CDS | 60.0% | |
| GAGGGCTGGAGAGAGTGACA+AGG | - | chr1.4:58259480-58259499 | MS.gene39934:CDS | 60.0% | |
| GGAAGCCGAGTTGCAAGGTG+AGG | - | chr1.4:58259657-58259676 | MS.gene39934:CDS | 60.0% | |
| GGCTCAAGTGGCTGAAGTCG+AGG | - | chr1.4:58259612-58259631 | MS.gene39934:CDS | 60.0% | |
| GGCTGGAGAGAGTGACAAGG+AGG | - | chr1.4:58259483-58259502 | MS.gene39934:CDS | 60.0% | |
| TTCCGGCTCCGGTTATCACC+AGG | + | chr1.4:58258868-58258887 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 58258836 | 58260400 | 58258836 | ID=MS.gene39934 |
| chr1.4 | mRNA | 58258836 | 58260400 | 58258836 | ID=MS.gene39934.t1;Parent=MS.gene39934 |
| chr1.4 | exon | 58259474 | 58260400 | 58259474 | ID=MS.gene39934.t1.exon1;Parent=MS.gene39934.t1 |
| chr1.4 | CDS | 58259474 | 58260400 | 58259474 | ID=cds.MS.gene39934.t1;Parent=MS.gene39934.t1 |
| chr1.4 | exon | 58258836 | 58259345 | 58258836 | ID=MS.gene39934.t1.exon2;Parent=MS.gene39934.t1 |
| chr1.4 | CDS | 58258836 | 58259345 | 58258836 | ID=cds.MS.gene39934.t1;Parent=MS.gene39934.t1 |
| Gene Sequence |
| Protein sequence |
