Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80214.t1 | XP_003603332.1 | 97.3 | 480 | 13 | 0 | 1 | 480 | 1 | 480 | 4.10E-189 | 671 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80214.t1 | D2XNQ9 | 97.3 | 480 | 13 | 0 | 1 | 480 | 1 | 480 | 9.8e-192 | 671.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80214.t1 | G7JAE4 | 97.3 | 480 | 13 | 0 | 1 | 480 | 1 | 480 | 2.9e-189 | 671.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80214.t1 | MTR_3g106420 | 97.083 | 480 | 14 | 0 | 1 | 480 | 1 | 480 | 0.0 | 949 |
| MS.gene80214.t1 | MTR_3g106480 | 93.515 | 478 | 31 | 0 | 3 | 480 | 1 | 478 | 0.0 | 912 |
| MS.gene80214.t1 | MTR_3g106485 | 94.351 | 478 | 23 | 2 | 3 | 480 | 1 | 474 | 0.0 | 884 |
| MS.gene80214.t1 | MTR_1g083190 | 93.750 | 480 | 22 | 1 | 1 | 480 | 1 | 472 | 0.0 | 884 |
| MS.gene80214.t1 | MTR_1g073400 | 91.004 | 478 | 39 | 1 | 3 | 480 | 1 | 474 | 0.0 | 840 |
| MS.gene80214.t1 | MTR_1g115145 | 88.935 | 479 | 46 | 3 | 3 | 480 | 1 | 473 | 0.0 | 840 |
| MS.gene80214.t1 | MTR_3g106430 | 92.453 | 477 | 32 | 2 | 3 | 479 | 1 | 473 | 0.0 | 839 |
| MS.gene80214.t1 | MTR_1g071130 | 85.774 | 478 | 39 | 2 | 3 | 480 | 1 | 449 | 0.0 | 830 |
| MS.gene80214.t1 | MTR_3g106470 | 83.229 | 477 | 24 | 2 | 3 | 479 | 32 | 452 | 0.0 | 756 |
| MS.gene80214.t1 | MTR_8g063830 | 80.430 | 465 | 50 | 5 | 3 | 466 | 1 | 425 | 0.0 | 670 |
| MS.gene80214.t1 | MTR_3g065540 | 64.348 | 115 | 14 | 1 | 42 | 156 | 14 | 101 | 5.94e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80214.t1 | AT5G25260 | 73.784 | 473 | 112 | 2 | 3 | 475 | 1 | 461 | 0.0 | 722 |
| MS.gene80214.t1 | AT5G25250 | 73.996 | 473 | 109 | 2 | 3 | 475 | 1 | 459 | 0.0 | 713 |
| MS.gene80214.t1 | AT5G64870 | 70.339 | 472 | 129 | 1 | 4 | 475 | 3 | 463 | 0.0 | 650 |
Find 120 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAGTATTTCTCATATT+TGG | 0.110239 | 3.4:-92835886 | MS.gene80214:CDS |
| TTTAGGTACAAGAAGCAAAT+TGG | 0.249457 | 3.4:-92834433 | MS.gene80214:intron |
| TTGAGCCTAAGATTAGTATT+TGG | 0.251063 | 3.4:-92834106 | MS.gene80214:CDS |
| CAAAGAAGGCCGTGGCTCTA+AGG | 0.288894 | 3.4:-92835557 | MS.gene80214:CDS |
| CATGAGTATTTCTCATATTT+GGG | 0.292202 | 3.4:-92835885 | MS.gene80214:CDS |
| AACAAGTTCATTAACATGAT+TGG | 0.311801 | 3.4:+92836085 | None:intergenic |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 3.4:-92835810 | MS.gene80214:CDS |
| CATCAAGAATGAAAATTTAC+CGG | 0.347355 | 3.4:-92836370 | None:intergenic |
| CTCCCCGCTGTCTTCACAAT+TGG | 0.348065 | 3.4:-92836176 | MS.gene80214:CDS |
| CAACTTGAGTTGAATCAATT+CGG | 0.350972 | 3.4:-92835957 | MS.gene80214:CDS |
| GAAGAAGGCGGCTTGGACTA+AGG | 0.362386 | 3.4:-92835604 | MS.gene80214:CDS |
| AGAGATTACTTGATGATAAA+TGG | 0.366679 | 3.4:-92834179 | MS.gene80214:CDS |
| GTAACATTCCCGTTTGTTCA+TGG | 0.378374 | 3.4:+92833982 | None:intergenic |
| GTGAAATTGGTTCAAAATTG+AGG | 0.384625 | 3.4:-92835797 | MS.gene80214:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.384650 | 3.4:+92834101 | None:intergenic |
| ACTTCGAAGGTATAGTTTAC+CGG | 0.387396 | 3.4:+92836233 | None:intergenic |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 3.4:-92835922 | MS.gene80214:CDS |
| TCATGGACAGTCTTAAATAA+AGG | 0.405157 | 3.4:+92833999 | None:intergenic |
| TCAGAATACCTTGTGATAAC+AGG | 0.405430 | 3.4:-92836335 | MS.gene80214:CDS |
| TGGTCCTCGTGTTGACGATC+AGG | 0.407219 | 3.4:-92836156 | MS.gene80214:CDS |
| GGCTTGGACTAAGGCGGCTC+AGG | 0.415815 | 3.4:-92835595 | MS.gene80214:CDS |
| CATGTTAATGAACTTGTTCA+AGG | 0.419850 | 3.4:-92836080 | MS.gene80214:CDS |
| AGCTGGAGAGGGTGAGAAGG+AGG | 0.426976 | 3.4:-92835709 | MS.gene80214:CDS |
| ATCATGCGGTGAAATAAGTT+TGG | 0.432419 | 3.4:+92836115 | None:intergenic |
| TGAAATTGGTTCAAAATTGA+GGG | 0.433449 | 3.4:-92835796 | MS.gene80214:CDS |
| TGGACTAACGGTGGTGATAA+TGG | 0.448931 | 3.4:-92834086 | MS.gene80214:CDS |
| CTTTGCATATAGCTCTGCTT+CGG | 0.455229 | 3.4:+92834298 | None:intergenic |
| CGGTCAATCCTGCACCGTCT+TGG | 0.457748 | 3.4:-92836264 | MS.gene80214:CDS |
| TTAGGTACAAGAAGCAAATT+GGG | 0.457872 | 3.4:-92834432 | MS.gene80214:intron |
| AATGTTACCACCTGCTTGGA+TGG | 0.462701 | 3.4:-92833967 | MS.gene80214:CDS |
| AAGCAATTGGTGGACGTGCC+CGG | 0.467503 | 3.4:-92835909 | MS.gene80214:CDS |
| TAAGACTGTCCATGAACAAA+CGG | 0.468427 | 3.4:-92833991 | MS.gene80214:CDS |
| CAGAGGGAACTGTGACCCTT+GGG | 0.468585 | 3.4:-92834265 | MS.gene80214:CDS |
| CAAGACGGTGCAGGATTGAC+CGG | 0.470050 | 3.4:+92836265 | None:intergenic |
| GGGAATAACTGAAGGTGCCA+TGG | 0.487818 | 3.4:-92834060 | MS.gene80214:CDS |
| CTCAAGTCCGCGTACCGCCT+CGG | 0.491620 | 3.4:+92834124 | None:intergenic |
| ATTCTGATGCTTTCGCGACC+CGG | 0.494061 | 3.4:+92836351 | None:intergenic |
| GAGAGCTGGAGAGGGTGAGA+AGG | 0.498051 | 3.4:-92835712 | MS.gene80214:CDS |
| GGACCAATTGTGAAGACAGC+GGG | 0.501529 | 3.4:+92836173 | None:intergenic |
| TGCTTCCATGACGATGGAGG+AGG | 0.505459 | 3.4:-92836027 | MS.gene80214:CDS |
| CGGGAATGTTACCACCTGCT+TGG | 0.507160 | 3.4:-92833971 | MS.gene80214:CDS |
| GCTGGAGAGGGTGAGAAGGA+GGG | 0.508003 | 3.4:-92835708 | MS.gene80214:CDS |
| GGCTGAAGTCGAGGCAAAGA+AGG | 0.508773 | 3.4:-92835571 | MS.gene80214:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.509643 | 3.4:-92834381 | MS.gene80214:CDS |
| TTGGACTAAGGCGGCTCAGG+TGG | 0.510364 | 3.4:-92835592 | MS.gene80214:CDS |
| GCAGAGGGAACTGTGACCCT+TGG | 0.512908 | 3.4:-92834266 | MS.gene80214:CDS |
| AAGACTGTCCATGAACAAAC+GGG | 0.515531 | 3.4:-92833990 | MS.gene80214:CDS |
| AAGACAGCGGGGAGAACAAA+AGG | 0.520506 | 3.4:+92836185 | None:intergenic |
| GTTATTGCGATGCAGAGAGC+TGG | 0.520901 | 3.4:-92835726 | MS.gene80214:CDS |
| TGGCTAAGAAGAAGGCGGCT+TGG | 0.522658 | 3.4:-92835611 | MS.gene80214:CDS |
| GAGAACAAAAGGAAGTTTCT+CGG | 0.527868 | 3.4:+92836196 | None:intergenic |
| AAAGAAGGCCGTGGCTCTAA+GGG | 0.531548 | 3.4:-92835556 | MS.gene80214:CDS |
| TTCTGAGTTGGCTAAGAAGA+AGG | 0.532968 | 3.4:-92835619 | MS.gene80214:CDS |
| TAAGTTTGGCGTATTTGAGA+AGG | 0.534048 | 3.4:+92836129 | None:intergenic |
| GGAATAACTGAAGGTGCCAT+GGG | 0.534697 | 3.4:-92834059 | MS.gene80214:CDS |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 3.4:+92834043 | None:intergenic |
| GGCAAGACTCCCATCCAAGC+AGG | 0.534806 | 3.4:+92833957 | None:intergenic |
| TGAGAGGTCCAAGACGGTGC+AGG | 0.535402 | 3.4:+92836256 | None:intergenic |
| TGCGAATGTTAAGCAATTGG+TGG | 0.535672 | 3.4:-92835919 | MS.gene80214:CDS |
| TGGAAGCAAAGAATCAAGCT+AGG | 0.539726 | 3.4:-92835848 | MS.gene80214:CDS |
| CACCGTCTTGGACCTCTCAC+CGG | 0.539796 | 3.4:-92836252 | MS.gene80214:CDS |
| GGCTCAAGCTAATTCTGAGT+TGG | 0.541784 | 3.4:-92835631 | MS.gene80214:CDS |
| ATATGAGAAATACTCATGAC+CGG | 0.550689 | 3.4:+92835890 | None:intergenic |
| GGCTCAGGTGGCTGAAGTCG+AGG | 0.551986 | 3.4:-92835580 | MS.gene80214:CDS |
| TAAAGTGAGGACTGAAGTGA+AGG | 0.556664 | 3.4:-92835682 | MS.gene80214:CDS |
| AAGATTAGTATTTGGACTAA+CGG | 0.563509 | 3.4:-92834098 | MS.gene80214:CDS |
| ACTCATTGCTTGAACTTCGA+AGG | 0.568460 | 3.4:+92836220 | None:intergenic |
| ATGTTACCACCTGCTTGGAT+GGG | 0.569893 | 3.4:-92833966 | MS.gene80214:CDS |
| GTGACCCTTGGGAATGCTCA+AGG | 0.570059 | 3.4:-92834254 | MS.gene80214:CDS |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 3.4:-92834221 | MS.gene80214:CDS |
| GGCAGAAGCACAGAAAGCGT+CGG | 0.572484 | 3.4:-92834354 | MS.gene80214:CDS |
| GAAAACCTCCTCCATCGTCA+TGG | 0.573319 | 3.4:+92836022 | None:intergenic |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 3.4:-92834041 | MS.gene80214:CDS |
| ATTGGTTCAAAATTGAGGGA+AGG | 0.580771 | 3.4:-92835792 | MS.gene80214:CDS |
| TGCGATGCAGAGAGCTGGAG+AGG | 0.580805 | 3.4:-92835721 | MS.gene80214:CDS |
| ATCAAGAATGAAAATTTACC+GGG | 0.586313 | 3.4:-92836369 | None:intergenic |
| ACGCTCCTTGAGCATTCCCA+AGG | 0.588853 | 3.4:+92834249 | None:intergenic |
| AAGACGGTGCAGGATTGACC+GGG | 0.589066 | 3.4:+92836266 | None:intergenic |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 3.4:-92835652 | MS.gene80214:CDS |
| CGCTGCTTCCATGACGATGG+AGG | 0.591242 | 3.4:-92836030 | MS.gene80214:CDS |
| AACGGTGGTGATAATGGTGG+GGG | 0.598797 | 3.4:-92834080 | MS.gene80214:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 3.4:-92834375 | MS.gene80214:CDS |
| GCGATGCAGAGAGCTGGAGA+GGG | 0.601209 | 3.4:-92835720 | MS.gene80214:CDS |
| CTTGTTCAAGGAATCATCGA+AGG | 0.603463 | 3.4:-92836068 | MS.gene80214:CDS |
| AGTCGAGGCAAAGAAGGCCG+TGG | 0.604613 | 3.4:-92835565 | MS.gene80214:CDS |
| AGAAGGAGGGAATTAAAGTG+AGG | 0.607130 | 3.4:-92835695 | MS.gene80214:CDS |
| AGGTATAGTTTACCGGTGAG+AGG | 0.607470 | 3.4:+92836240 | None:intergenic |
| TAACGGTGGTGATAATGGTG+GGG | 0.609681 | 3.4:-92834081 | MS.gene80214:CDS |
| CTAAGGGAAGCTGAGTTGCA+AGG | 0.613783 | 3.4:-92835540 | MS.gene80214:CDS |
| TTTGGGTCAAAAGACGCAGA+TGG | 0.613836 | 3.4:-92835868 | MS.gene80214:CDS |
| GTGTCAGAAGCTAAGATGAA+AGG | 0.614706 | 3.4:-92835819 | MS.gene80214:CDS |
| TTGTTCAAGGAATCATCGAA+GGG | 0.619293 | 3.4:-92836067 | MS.gene80214:CDS |
| TGGACAGTCTTAAATAAAGG+TGG | 0.623648 | 3.4:+92834002 | None:intergenic |
| CGCTCCTTGAGCATTCCCAA+GGG | 0.624114 | 3.4:+92834250 | None:intergenic |
| GGAAGCAAAGAATCAAGCTA+GGG | 0.626751 | 3.4:-92835847 | MS.gene80214:CDS |
| GTTCATTAACATGATTGGAG+TGG | 0.628854 | 3.4:+92836090 | None:intergenic |
| CTAACGGTGGTGATAATGGT+GGG | 0.630678 | 3.4:-92834082 | MS.gene80214:CDS |
| CTCAGCTTCCCTTAGAGCCA+CGG | 0.639524 | 3.4:+92835548 | None:intergenic |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 3.4:-92834141 | MS.gene80214:CDS |
| GCTGTACAAGAAACAGAAAG+AGG | 0.643966 | 3.4:-92834408 | MS.gene80214:CDS |
| ACTCGCTGCTTCCATGACGA+TGG | 0.644314 | 3.4:-92836033 | MS.gene80214:CDS |
| TATGAGAAATACTCATGACC+GGG | 0.646479 | 3.4:+92835891 | None:intergenic |
| TAGTGTTCAATATGAAACCA+AGG | 0.651992 | 3.4:-92835451 | MS.gene80214:intron |
| GAAAATTGATGCAGAGACGA+AGG | 0.652587 | 3.4:-92835748 | MS.gene80214:CDS |
| AGTTGCAAGGTGAAGTTGAG+AGG | 0.653383 | 3.4:-92835527 | MS.gene80214:CDS |
| TGAGTTGGCTAAGAAGAAGG+CGG | 0.655618 | 3.4:-92835616 | MS.gene80214:CDS |
| TGCTAAGATTAATGCCGAGG+CGG | 0.661554 | 3.4:-92834138 | MS.gene80214:CDS |
| TACCGGTGAGAGGTCCAAGA+CGG | 0.667806 | 3.4:+92836250 | None:intergenic |
| TGAAAATACCTGTTATCACA+AGG | 0.669974 | 3.4:+92836327 | None:intergenic |
| AAGACTCCCATCCAAGCAGG+TGG | 0.679480 | 3.4:+92833960 | None:intergenic |
| ATTAATGCCGAGGCGGTACG+CGG | 0.680968 | 3.4:-92834131 | MS.gene80214:CDS |
| GATTACTTGATGATAAATGG+TGG | 0.681438 | 3.4:-92834176 | MS.gene80214:CDS |
| ATTAGTATTTGGACTAACGG+TGG | 0.682600 | 3.4:-92834095 | MS.gene80214:CDS |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 3.4:+92836152 | None:intergenic |
| ACTAACGGTGGTGATAATGG+TGG | 0.694563 | 3.4:-92834083 | MS.gene80214:CDS |
| TGATTGGAGTGGCGATCATG+CGG | 0.696244 | 3.4:+92836101 | None:intergenic |
| TGTTCAAGGAATCATCGAAG+GGG | 0.705776 | 3.4:-92836066 | MS.gene80214:CDS |
| GACCAATTGTGAAGACAGCG+GGG | 0.714278 | 3.4:+92836174 | None:intergenic |
| AGGACCAATTGTGAAGACAG+CGG | 0.726189 | 3.4:+92836172 | None:intergenic |
| GAAGGCGGCTTGGACTAAGG+CGG | 0.753883 | 3.4:-92835601 | MS.gene80214:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACTTGTATAATAATTTAT+AGG | + | chr3.4:92835520-92835539 | None:intergenic | 10.0% |
| !! | TATTATAATGAGATCATAAT+TGG | - | chr3.4:92835367-92835386 | MS.gene80214:intron | 15.0% |
| !!! | AATATATATTAATTTGTTGC+TGG | + | chr3.4:92834940-92834959 | None:intergenic | 15.0% |
| !!! | ATTTTTGGTGATTAAAATTT+TGG | - | chr3.4:92835843-92835862 | MS.gene80214:CDS | 15.0% |
| !! | AGAATCAAAGATAATTGTAA+TGG | - | chr3.4:92835324-92835343 | MS.gene80214:intron | 20.0% |
| !! | CTTGTATAATAATTTATAGG+TGG | + | chr3.4:92835517-92835536 | None:intergenic | 20.0% |
| !!! | AAAAGTAGTAACTTTTACAT+TGG | - | chr3.4:92835131-92835150 | MS.gene80214:intron | 20.0% |
| !!! | AACATTTACTTTTTAGATCT+TGG | - | chr3.4:92835795-92835814 | MS.gene80214:CDS | 20.0% |
| !!! | AGTCTAAATTTTTTTTTGAG+AGG | + | chr3.4:92835176-92835195 | None:intergenic | 20.0% |
| !!! | ATCTGATTAAACTTTTATGA+TGG | - | chr3.4:92835595-92835614 | MS.gene80214:CDS | 20.0% |
| !!! | ATTAAAATTTTGGATGGTTT+AGG | - | chr3.4:92835853-92835872 | MS.gene80214:CDS | 20.0% |
| !!! | ATTTTACTGGATTACATTTT+TGG | - | chr3.4:92835828-92835847 | MS.gene80214:CDS | 20.0% |
| !!! | GATTCTCTATAAAACTTTTA+TGG | + | chr3.4:92835222-92835241 | None:intergenic | 20.0% |
| ! | AACAAGTTCATTAACATGAT+TGG | + | chr3.4:92834221-92834240 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+CGG | - | chr3.4:92836205-92836224 | MS.gene80214:CDS | 25.0% |
| ! | ACTTACTGTAGTATGTAATT+TGG | - | chr3.4:92835643-92835662 | MS.gene80214:CDS | 25.0% |
| ! | ATGATCTCATTATAATAGTG+AGG | + | chr3.4:92835364-92835383 | None:intergenic | 25.0% |
| ! | CATGAGTATTTCTCATATTT+GGG | - | chr3.4:92834418-92834437 | MS.gene80214:CDS | 25.0% |
| ! | TCATGAGTATTTCTCATATT+TGG | - | chr3.4:92834417-92834436 | MS.gene80214:CDS | 25.0% |
| ! | TGAAAGAAGTTATATTTGCA+TGG | + | chr3.4:92834888-92834907 | None:intergenic | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | + | chr3.4:92836205-92836224 | None:intergenic | 25.0% |
| ! | TTGTAAGGTAACATTAACTA+TGG | + | chr3.4:92835481-92835500 | None:intergenic | 25.0% |
| !! | AGAGATTACTTGATGATAAA+TGG | - | chr3.4:92836124-92836143 | MS.gene80214:CDS | 25.0% |
| !! | GTAACTTTTACATTGGAAAT+TGG | - | chr3.4:92835138-92835157 | MS.gene80214:intron | 25.0% |
| !! | TCATGTTAAACAAGTTGAAA+AGG | + | chr3.4:92835730-92835749 | None:intergenic | 25.0% |
| !! | TGAAATTGGTTCAAAATTGA+GGG | - | chr3.4:92834507-92834526 | MS.gene80214:intron | 25.0% |
| !! | TTCGATTGTTTTCTAATTGA+TGG | - | chr3.4:92835445-92835464 | MS.gene80214:intron | 25.0% |
| !!! | CTAAATTTTTTTTTGAGAGG+TGG | + | chr3.4:92835173-92835192 | None:intergenic | 25.0% |
| !!! | TGGCTATTTGATAATTTTAC+TGG | - | chr3.4:92835815-92835834 | MS.gene80214:CDS | 25.0% |
| !!! | TTGGTGATTAAAATTTTGGA+TGG | - | chr3.4:92835847-92835866 | MS.gene80214:CDS | 25.0% |
| AATAGTGAGGTTAAGTAAGT+AGG | + | chr3.4:92835351-92835370 | None:intergenic | 30.0% | |
| ACAGAATATTATTACAGCCT+TGG | - | chr3.4:92835244-92835263 | MS.gene80214:intron | 30.0% | |
| ATATGAGAAATACTCATGAC+CGG | + | chr3.4:92834416-92834435 | None:intergenic | 30.0% | |
| GATGTGAACAATGTCTATTT+GGG | - | chr3.4:92835005-92835024 | MS.gene80214:intron | 30.0% | |
| GCTATATGCAAAGAAAAAAG+AGG | - | chr3.4:92836015-92836034 | MS.gene80214:CDS | 30.0% | |
| TAGTGTTCAATATGAAACCA+AGG | - | chr3.4:92834852-92834871 | MS.gene80214:intron | 30.0% | |
| TATCAGTTGACAATAGTCAT+AGG | - | chr3.4:92835279-92835298 | MS.gene80214:intron | 30.0% | |
| TCAAACTCAAAAAGAAAGCA+TGG | - | chr3.4:92834008-92834027 | MS.gene80214:CDS | 30.0% | |
| TCATGGACAGTCTTAAATAA+AGG | + | chr3.4:92836307-92836326 | None:intergenic | 30.0% | |
| TGAAAATACCTGTTATCACA+AGG | + | chr3.4:92833979-92833998 | None:intergenic | 30.0% | |
| TGATGTGAACAATGTCTATT+TGG | - | chr3.4:92835004-92835023 | MS.gene80214:intron | 30.0% | |
| TGCAAACAGATTGAAGAATA+TGG | - | chr3.4:92835689-92835708 | MS.gene80214:CDS | 30.0% | |
| TTAGGTACAAGAAGCAAATT+GGG | - | chr3.4:92835871-92835890 | MS.gene80214:CDS | 30.0% | |
| TTGAGCCTAAGATTAGTATT+TGG | - | chr3.4:92836197-92836216 | MS.gene80214:CDS | 30.0% | |
| TTTAGGTACAAGAAGCAAAT+TGG | - | chr3.4:92835870-92835889 | MS.gene80214:CDS | 30.0% | |
| ! | AAGCTATCTTCTAGTTGTAT+CGG | + | chr3.4:92835426-92835445 | None:intergenic | 30.0% |
| ! | CATGTTAATGAACTTGTTCA+AGG | - | chr3.4:92834223-92834242 | MS.gene80214:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr3.4:92836127-92836146 | MS.gene80214:CDS | 30.0% |
| ! | GTGAAATTGGTTCAAAATTG+AGG | - | chr3.4:92834506-92834525 | MS.gene80214:intron | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+CGG | - | chr3.4:92834346-92834365 | MS.gene80214:CDS | 30.0% |
| AGCAATTCTGTATGAGAAGA+AGG | - | chr3.4:92835922-92835941 | MS.gene80214:CDS | 35.0% | |
| ATCATGCGGTGAAATAAGTT+TGG | + | chr3.4:92834191-92834210 | None:intergenic | 35.0% | |
| ATTAGTATTTGGACTAACGG+TGG | - | chr3.4:92836208-92836227 | MS.gene80214:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | - | chr3.4:92834381-92834400 | MS.gene80214:CDS | 35.0% | |
| CAATGTCTATTTGGGTGTTT+AGG | - | chr3.4:92835013-92835032 | MS.gene80214:intron | 35.0% | |
| GAGAACAAAAGGAAGTTTCT+CGG | + | chr3.4:92834110-92834129 | None:intergenic | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | - | chr3.4:92834493-92834512 | MS.gene80214:intron | 35.0% | |
| GGTAACTATGCTTACTTGTA+AGG | + | chr3.4:92835496-92835515 | None:intergenic | 35.0% | |
| GTTCATTAACATGATTGGAG+TGG | + | chr3.4:92834216-92834235 | None:intergenic | 35.0% | |
| TAAGACTGTCCATGAACAAA+CGG | - | chr3.4:92836312-92836331 | MS.gene80214:CDS | 35.0% | |
| TAAGTTTGGCGTATTTGAGA+AGG | + | chr3.4:92834177-92834196 | None:intergenic | 35.0% | |
| TATGAGAAATACTCATGACC+GGG | + | chr3.4:92834415-92834434 | None:intergenic | 35.0% | |
| TCAGAATACCTTGTGATAAC+AGG | - | chr3.4:92833968-92833987 | MS.gene80214:CDS | 35.0% | |
| TGGACAGTCTTAAATAAAGG+TGG | + | chr3.4:92836304-92836323 | None:intergenic | 35.0% | |
| TTGTTCAAGGAATCATCGAA+GGG | - | chr3.4:92834236-92834255 | MS.gene80214:CDS | 35.0% | |
| ! | ACTTCGAAGGTATAGTTTAC+CGG | + | chr3.4:92834073-92834092 | None:intergenic | 35.0% |
| ! | ATTATTACAGCCTTGGTGAT+TGG | - | chr3.4:92835251-92835270 | MS.gene80214:intron | 35.0% |
| ! | ATTGGTTCAAAATTGAGGGA+AGG | - | chr3.4:92834511-92834530 | MS.gene80214:intron | 35.0% |
| ! | TATCTTCTAGTTGTATCGGT+GGG | + | chr3.4:92835422-92835441 | None:intergenic | 35.0% |
| !! | AAGAAAGCATGGATTTTTCC+CGG | - | chr3.4:92834019-92834038 | MS.gene80214:CDS | 35.0% |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | - | chr3.4:92834642-92834661 | MS.gene80214:intron | 35.0% |
| AAGACTGTCCATGAACAAAC+GGG | - | chr3.4:92836313-92836332 | MS.gene80214:CDS | 40.0% | |
| AATGCTCAAAGAATGCCCTA+AGG | + | chr3.4:92835110-92835129 | None:intergenic | 40.0% | |
| ACTCATTGCTTGAACTTCGA+AGG | + | chr3.4:92834086-92834105 | None:intergenic | 40.0% | |
| AGAAGGAGGGAATTAAAGTG+AGG | - | chr3.4:92834608-92834627 | MS.gene80214:intron | 40.0% | |
| AGCAACTTCTTTCATACCCA+TGG | + | chr3.4:92836263-92836282 | None:intergenic | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | - | chr3.4:92836082-92836101 | MS.gene80214:CDS | 40.0% | |
| ATGCTCAAAGAATGCCCTAA+GGG | + | chr3.4:92835109-92835128 | None:intergenic | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | - | chr3.4:92836262-92836281 | MS.gene80214:CDS | 40.0% | |
| CTTGTTCAAGGAATCATCGA+AGG | - | chr3.4:92834235-92834254 | MS.gene80214:CDS | 40.0% | |
| GAAAATTGATGCAGAGACGA+AGG | - | chr3.4:92834555-92834574 | MS.gene80214:intron | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | - | chr3.4:92836162-92836181 | MS.gene80214:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+GGG | - | chr3.4:92836022-92836041 | MS.gene80214:CDS | 40.0% | |
| GCTGTACAAGAAACAGAAAG+AGG | - | chr3.4:92835895-92835914 | MS.gene80214:CDS | 40.0% | |
| GGAAGCAAAGAATCAAGCTA+GGG | - | chr3.4:92834456-92834475 | MS.gene80214:intron | 40.0% | |
| GTAACATTCCCGTTTGTTCA+TGG | + | chr3.4:92836324-92836343 | None:intergenic | 40.0% | |
| GTGTCAGAAGCTAAGATGAA+AGG | - | chr3.4:92834484-92834503 | MS.gene80214:intron | 40.0% | |
| TAAAGTGAGGACTGAAGTGA+AGG | - | chr3.4:92834621-92834640 | MS.gene80214:intron | 40.0% | |
| TGATACTGTACCAATCACCA+AGG | + | chr3.4:92835264-92835283 | None:intergenic | 40.0% | |
| TGCAAAGAAAAAAGAGGCAG+AGG | - | chr3.4:92836021-92836040 | MS.gene80214:CDS | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | - | chr3.4:92834384-92834403 | MS.gene80214:CDS | 40.0% | |
| TGGAAGCAAAGAATCAAGCT+AGG | - | chr3.4:92834455-92834474 | MS.gene80214:intron | 40.0% | |
| TGGCGACAAAACAATTCAAG+TGG | + | chr3.4:92835202-92835221 | None:intergenic | 40.0% | |
| TGTTCAAGGAATCATCGAAG+GGG | - | chr3.4:92834237-92834256 | MS.gene80214:CDS | 40.0% | |
| ! | ATCTTCTAGTTGTATCGGTG+GGG | + | chr3.4:92835421-92835440 | None:intergenic | 40.0% |
| ! | CTATCTTCTAGTTGTATCGG+TGG | + | chr3.4:92835423-92835442 | None:intergenic | 40.0% |
| ! | CTTTGCATATAGCTCTGCTT+CGG | + | chr3.4:92836008-92836027 | None:intergenic | 40.0% |
| ! | TGCATGGACTAAACTAACCT+TGG | + | chr3.4:92834872-92834891 | None:intergenic | 40.0% |
| ! | TTCTGAGTTGGCTAAGAAGA+AGG | - | chr3.4:92834684-92834703 | MS.gene80214:intron | 40.0% |
| AATGTTACCACCTGCTTGGA+TGG | - | chr3.4:92836336-92836355 | MS.gene80214:CDS | 45.0% | |
| ACCAACATAGTCACGCTCAA+TGG | - | chr3.4:92835070-92835089 | MS.gene80214:intron | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | + | chr3.4:92834134-92834153 | None:intergenic | 45.0% | |
| AGGTATAGTTTACCGGTGAG+AGG | + | chr3.4:92834066-92834085 | None:intergenic | 45.0% | |
| AGTTGCAAGGTGAAGTTGAG+AGG | - | chr3.4:92834776-92834795 | MS.gene80214:intron | 45.0% | |
| ATGTTACCACCTGCTTGGAT+GGG | - | chr3.4:92836337-92836356 | MS.gene80214:CDS | 45.0% | |
| CCAACATAGTCACGCTCAAT+GGG | - | chr3.4:92835071-92835090 | MS.gene80214:intron | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | - | chr3.4:92834651-92834670 | MS.gene80214:intron | 45.0% | |
| GGCTCAAGCTAATTCTGAGT+TGG | - | chr3.4:92834672-92834691 | MS.gene80214:intron | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr3.4:92835928-92835947 | MS.gene80214:CDS | 45.0% | |
| TGCTAAGATTAATGCCGAGG+CGG | - | chr3.4:92836165-92836184 | MS.gene80214:CDS | 45.0% | |
| TGGACTAACGGTGGTGATAA+TGG | - | chr3.4:92836217-92836236 | MS.gene80214:CDS | 45.0% | |
| TTTGGGTCAAAAGACGCAGA+TGG | - | chr3.4:92834435-92834454 | MS.gene80214:intron | 45.0% | |
| ! | AATGGTGGGGGAATAACTGA+AGG | - | chr3.4:92836235-92836254 | MS.gene80214:CDS | 45.0% |
| ! | TCTTCTAGTTGTATCGGTGG+GGG | + | chr3.4:92835420-92835439 | None:intergenic | 45.0% |
| ! | TGAGTTGGCTAAGAAGAAGG+CGG | - | chr3.4:92834687-92834706 | MS.gene80214:intron | 45.0% |
| !! | ACTAACGGTGGTGATAATGG+TGG | - | chr3.4:92836220-92836239 | MS.gene80214:CDS | 45.0% |
| !! | CTAACGGTGGTGATAATGGT+GGG | - | chr3.4:92836221-92836240 | MS.gene80214:CDS | 45.0% |
| !! | GGAATAACTGAAGGTGCCAT+GGG | - | chr3.4:92836244-92836263 | MS.gene80214:CDS | 45.0% |
| !! | TAACGGTGGTGATAATGGTG+GGG | - | chr3.4:92836222-92836241 | MS.gene80214:CDS | 45.0% |
| !! | CAAATTAATATATATTATAT+AGG | - | chr3.4:92834944-92834963 | MS.gene80214:intron | 5.0% |
| AAGACAGCGGGGAGAACAAA+AGG | + | chr3.4:92834121-92834140 | None:intergenic | 50.0% | |
| ACATAGTCACGCTCAATGGG+TGG | - | chr3.4:92835074-92835093 | MS.gene80214:intron | 50.0% | |
| ATTCTGATGCTTTCGCGACC+CGG | + | chr3.4:92833955-92833974 | None:intergenic | 50.0% | |
| CCCATTGAGCGTGACTATGT+TGG | + | chr3.4:92835074-92835093 | None:intergenic | 50.0% | |
| CTAAGGGAAGCTGAGTTGCA+AGG | - | chr3.4:92834763-92834782 | MS.gene80214:intron | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | + | chr3.4:92834154-92834173 | None:intergenic | 50.0% | |
| GAAAACCTCCTCCATCGTCA+TGG | + | chr3.4:92834284-92834303 | None:intergenic | 50.0% | |
| GACCAATTGTGAAGACAGCG+GGG | + | chr3.4:92834132-92834151 | None:intergenic | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | + | chr3.4:92834133-92834152 | None:intergenic | 50.0% | |
| GGTGGTAACAAGTGCCCTTA+GGG | - | chr3.4:92835092-92835111 | MS.gene80214:intron | 50.0% | |
| GTTATTGCGATGCAGAGAGC+TGG | - | chr3.4:92834577-92834596 | MS.gene80214:intron | 50.0% | |
| TGATTGGAGTGGCGATCATG+CGG | + | chr3.4:92834205-92834224 | None:intergenic | 50.0% | |
| ! | ACGATGGAGGAGGTTTTCAG+AGG | - | chr3.4:92834286-92834305 | MS.gene80214:CDS | 50.0% |
| !! | AAAGAAGGCCGTGGCTCTAA+GGG | - | chr3.4:92834747-92834766 | MS.gene80214:intron | 50.0% |
| !! | AACGGTGGTGATAATGGTGG+GGG | - | chr3.4:92836223-92836242 | MS.gene80214:CDS | 50.0% |
| !! | GGGAATAACTGAAGGTGCCA+TGG | - | chr3.4:92836243-92836262 | MS.gene80214:CDS | 50.0% |
| AAGACGGTGCAGGATTGACC+GGG | + | chr3.4:92834040-92834059 | None:intergenic | 55.0% | |
| AAGACTCCCATCCAAGCAGG+TGG | + | chr3.4:92836346-92836365 | None:intergenic | 55.0% | |
| ACGCTCCTTGAGCATTCCCA+AGG | + | chr3.4:92836057-92836076 | None:intergenic | 55.0% | |
| ACTCGCTGCTTCCATGACGA+TGG | - | chr3.4:92834270-92834289 | MS.gene80214:CDS | 55.0% | |
| ATTAATGCCGAGGCGGTACG+CGG | - | chr3.4:92836172-92836191 | MS.gene80214:CDS | 55.0% | |
| CAAGACGGTGCAGGATTGAC+CGG | + | chr3.4:92834041-92834060 | None:intergenic | 55.0% | |
| CAGAGGGAACTGTGACCCTT+GGG | - | chr3.4:92836038-92836057 | MS.gene80214:CDS | 55.0% | |
| CGCTCCTTGAGCATTCCCAA+GGG | + | chr3.4:92836056-92836075 | None:intergenic | 55.0% | |
| CGGGAATGTTACCACCTGCT+TGG | - | chr3.4:92836332-92836351 | MS.gene80214:CDS | 55.0% | |
| CTCAGCTTCCCTTAGAGCCA+CGG | + | chr3.4:92834758-92834777 | None:intergenic | 55.0% | |
| CTCCCCGCTGTCTTCACAAT+TGG | - | chr3.4:92834127-92834146 | MS.gene80214:CDS | 55.0% | |
| GGCTGAAGTCGAGGCAAAGA+AGG | - | chr3.4:92834732-92834751 | MS.gene80214:intron | 55.0% | |
| GGGTGGTAACAAGTGCCCTT+AGG | - | chr3.4:92835091-92835110 | MS.gene80214:intron | 55.0% | |
| GTGACCCTTGGGAATGCTCA+AGG | - | chr3.4:92836049-92836068 | MS.gene80214:CDS | 55.0% | |
| TACCGGTGAGAGGTCCAAGA+CGG | + | chr3.4:92834056-92834075 | None:intergenic | 55.0% | |
| TGCTTCCATGACGATGGAGG+AGG | - | chr3.4:92834276-92834295 | MS.gene80214:CDS | 55.0% | |
| TGGCTAAGAAGAAGGCGGCT+TGG | - | chr3.4:92834692-92834711 | MS.gene80214:intron | 55.0% | |
| ! | AAGCAATTGGTGGACGTGCC+CGG | - | chr3.4:92834394-92834413 | MS.gene80214:CDS | 55.0% |
| ! | CAAAGAAGGCCGTGGCTCTA+AGG | - | chr3.4:92834746-92834765 | MS.gene80214:intron | 55.0% |
| ! | GAAGAAGGCGGCTTGGACTA+AGG | - | chr3.4:92834699-92834718 | MS.gene80214:intron | 55.0% |
| ! | GGCAGAAGCACAGAAAGCGT+CGG | - | chr3.4:92835949-92835968 | MS.gene80214:CDS | 55.0% |
| ! | TGGTCCTCGTGTTGACGATC+AGG | - | chr3.4:92834147-92834166 | MS.gene80214:CDS | 55.0% |
| !! | CGGTGGGGGTTCTGACTTTT+GGG | + | chr3.4:92835406-92835425 | None:intergenic | 55.0% |
| !! | TCGGTGGGGGTTCTGACTTT+TGG | + | chr3.4:92835407-92835426 | None:intergenic | 55.0% |
| AGCTGGAGAGGGTGAGAAGG+AGG | - | chr3.4:92834594-92834613 | MS.gene80214:intron | 60.0% | |
| AGTCGAGGCAAAGAAGGCCG+TGG | - | chr3.4:92834738-92834757 | MS.gene80214:intron | 60.0% | |
| CACCGTCTTGGACCTCTCAC+CGG | - | chr3.4:92834051-92834070 | MS.gene80214:CDS | 60.0% | |
| CGCTGCTTCCATGACGATGG+AGG | - | chr3.4:92834273-92834292 | MS.gene80214:CDS | 60.0% | |
| CGGTCAATCCTGCACCGTCT+TGG | - | chr3.4:92834039-92834058 | MS.gene80214:CDS | 60.0% | |
| GAGAGCTGGAGAGGGTGAGA+AGG | - | chr3.4:92834591-92834610 | MS.gene80214:intron | 60.0% | |
| GCAGAGGGAACTGTGACCCT+TGG | - | chr3.4:92836037-92836056 | MS.gene80214:CDS | 60.0% | |
| GCGATGCAGAGAGCTGGAGA+GGG | - | chr3.4:92834583-92834602 | MS.gene80214:intron | 60.0% | |
| GCTGGAGAGGGTGAGAAGGA+GGG | - | chr3.4:92834595-92834614 | MS.gene80214:intron | 60.0% | |
| GGCAAGACTCCCATCCAAGC+AGG | + | chr3.4:92836349-92836368 | None:intergenic | 60.0% | |
| TGAGAGGTCCAAGACGGTGC+AGG | + | chr3.4:92834050-92834069 | None:intergenic | 60.0% | |
| TGCGATGCAGAGAGCTGGAG+AGG | - | chr3.4:92834582-92834601 | MS.gene80214:intron | 60.0% | |
| TTGGACTAAGGCGGCTCAGG+TGG | - | chr3.4:92834711-92834730 | MS.gene80214:intron | 60.0% | |
| ! | GAAGGCGGCTTGGACTAAGG+CGG | - | chr3.4:92834702-92834721 | MS.gene80214:intron | 60.0% |
| CTCAAGTCCGCGTACCGCCT+CGG | + | chr3.4:92836182-92836201 | None:intergenic | 65.0% | |
| GGCTCAGGTGGCTGAAGTCG+AGG | - | chr3.4:92834723-92834742 | MS.gene80214:intron | 65.0% | |
| GGCTTGGACTAAGGCGGCTC+AGG | - | chr3.4:92834708-92834727 | MS.gene80214:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 92833941 | 92836384 | 92833941 | ID=MS.gene80214 |
| chr3.4 | mRNA | 92833941 | 92836384 | 92833941 | ID=MS.gene80214.t1;Parent=MS.gene80214 |
| chr3.4 | exon | 92835452 | 92836384 | 92835452 | ID=MS.gene80214.t1.exon1;Parent=MS.gene80214.t1 |
| chr3.4 | CDS | 92835452 | 92836384 | 92835452 | ID=cds.MS.gene80214.t1;Parent=MS.gene80214.t1 |
| chr3.4 | exon | 92833941 | 92834450 | 92833941 | ID=MS.gene80214.t1.exon2;Parent=MS.gene80214.t1 |
| chr3.4 | CDS | 92833941 | 92834450 | 92833941 | ID=cds.MS.gene80214.t1;Parent=MS.gene80214.t1 |
| Gene Sequence |
| Protein sequence |
