Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80217.t1 | XP_003603333.2 | 98.3 | 479 | 4 | 2 | 1 | 479 | 1 | 475 | 2.60E-204 | 721.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80217.t1 | D2XNR1 | 98.3 | 479 | 4 | 2 | 1 | 479 | 1 | 475 | 6.3e-207 | 721.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80217.t1 | G7JAE5 | 98.3 | 479 | 4 | 2 | 1 | 479 | 1 | 475 | 1.9e-204 | 721.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050961 | MS.gene80217 | 0.80526 | 1.45E-49 | -1.69E-46 |
| MS.gene052053 | MS.gene80217 | 0.854543 | 1.15E-61 | -1.69E-46 |
| MS.gene055549 | MS.gene80217 | 0.808965 | 2.39E-50 | -1.69E-46 |
| MS.gene055550 | MS.gene80217 | 0.80548 | 1.31E-49 | -1.69E-46 |
| MS.gene056530 | MS.gene80217 | 0.801548 | 8.55E-49 | -1.69E-46 |
| MS.gene057226 | MS.gene80217 | 0.804842 | 1.78E-49 | -1.69E-46 |
| MS.gene058628 | MS.gene80217 | 0.818248 | 2.16E-52 | -1.69E-46 |
| MS.gene058629 | MS.gene80217 | 0.804107 | 2.53E-49 | -1.69E-46 |
| MS.gene058630 | MS.gene80217 | 0.802083 | 6.64E-49 | -1.69E-46 |
| MS.gene05884 | MS.gene80217 | 0.816715 | 4.79E-52 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80217.t1 | MTR_3g106430 | 98.539 | 479 | 3 | 2 | 1 | 479 | 1 | 475 | 0.0 | 944 |
| MS.gene80217.t1 | MTR_3g106480 | 92.887 | 478 | 34 | 0 | 1 | 478 | 1 | 478 | 0.0 | 906 |
| MS.gene80217.t1 | MTR_3g106420 | 92.050 | 478 | 38 | 0 | 1 | 478 | 3 | 480 | 0.0 | 870 |
| MS.gene80217.t1 | MTR_3g106485 | 91.632 | 478 | 36 | 2 | 1 | 478 | 1 | 474 | 0.0 | 857 |
| MS.gene80217.t1 | MTR_1g083190 | 91.841 | 478 | 31 | 1 | 1 | 478 | 3 | 472 | 0.0 | 852 |
| MS.gene80217.t1 | MTR_1g073400 | 91.841 | 478 | 35 | 1 | 1 | 478 | 1 | 474 | 0.0 | 845 |
| MS.gene80217.t1 | MTR_1g115145 | 89.144 | 479 | 45 | 3 | 1 | 478 | 1 | 473 | 0.0 | 842 |
| MS.gene80217.t1 | MTR_1g071130 | 86.402 | 478 | 36 | 2 | 1 | 478 | 1 | 449 | 0.0 | 835 |
| MS.gene80217.t1 | MTR_3g106470 | 82.180 | 477 | 29 | 2 | 1 | 477 | 32 | 452 | 0.0 | 742 |
| MS.gene80217.t1 | MTR_8g063830 | 81.075 | 465 | 47 | 5 | 1 | 464 | 1 | 425 | 0.0 | 669 |
| MS.gene80217.t1 | MTR_3g065540 | 66.087 | 115 | 12 | 1 | 40 | 154 | 14 | 101 | 2.38e-41 | 143 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80217.t1 | AT5G25260 | 74.419 | 473 | 109 | 2 | 1 | 473 | 1 | 461 | 0.0 | 721 |
| MS.gene80217.t1 | AT5G25250 | 74.841 | 473 | 105 | 2 | 1 | 473 | 1 | 459 | 0.0 | 719 |
| MS.gene80217.t1 | AT5G64870 | 70.763 | 472 | 127 | 1 | 2 | 473 | 3 | 463 | 0.0 | 647 |
Find 120 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAATATTTCTCATATT+TGG | 0.034420 | 3.4:-92854150 | MS.gene80217:CDS |
| GTGAGATTGGTTCGAAATTA+AGG | 0.141080 | 3.4:-92854061 | MS.gene80217:CDS |
| CTGCTTCCATTTGTGTCTTT+TGG | 0.142752 | 3.4:+92854126 | None:intergenic |
| GAGTTTAAACAAGAAGTATT+TGG | 0.198991 | 3.4:-92854251 | MS.gene80217:CDS |
| ACTTCAAAGGTGTAATTTAC+AGG | 0.279006 | 3.4:+92854497 | None:intergenic |
| CATGAATATTTCTCATATTT+GGG | 0.285753 | 3.4:-92854149 | MS.gene80217:CDS |
| AGGGATTACTTAATGATAAA+TGG | 0.291040 | 3.4:-92852640 | MS.gene80217:CDS |
| CTGCTAAAGCCGTAGCTCTA+AGG | 0.291473 | 3.4:-92853821 | MS.gene80217:CDS |
| AACAAGTTCCTTAACATGAT+TGG | 0.309318 | 3.4:+92854349 | None:intergenic |
| AGTTTAAACAAGAAGTATTT+GGG | 0.333241 | 3.4:-92854250 | MS.gene80217:CDS |
| TCACAATACCTTGTGATAAC+TGG | 0.348490 | 3.4:-92854599 | MS.gene80217:CDS |
| AGAGCTATATGCAAAGAAAA+AGG | 0.353826 | 3.4:-92852752 | MS.gene80217:CDS |
| ATCATGAGGGGAAATTAGTT+TGG | 0.369987 | 3.4:+92854379 | None:intergenic |
| TGTAAATCAATAAACCGAAT+TGG | 0.376492 | 3.4:+92854207 | None:intergenic |
| GTAACATTCCCGTTTGTTCA+TGG | 0.378374 | 3.4:+92852443 | None:intergenic |
| AAGATTAGCATTTGGACTAA+TGG | 0.384982 | 3.4:-92852559 | MS.gene80217:CDS |
| TATAGGTACAAGAAGCAAAC+TGG | 0.387176 | 3.4:-92852894 | MS.gene80217:intron |
| TGAGATTGGTTCGAAATTAA+GGG | 0.391205 | 3.4:-92854060 | MS.gene80217:CDS |
| TTAGTCCAAATGCTAATCTT+AGG | 0.400981 | 3.4:+92852562 | None:intergenic |
| CAACTTGAACTAAACCAATT+CGG | 0.410262 | 3.4:-92854221 | MS.gene80217:CDS |
| GGCTGAGGCTAATTCTGAAT+TGG | 0.413100 | 3.4:-92853895 | MS.gene80217:CDS |
| TTGAGCCTAAGATTAGCATT+TGG | 0.413132 | 3.4:-92852567 | MS.gene80217:CDS |
| CGGTCCTCGTGTGGATGATA+AGG | 0.423356 | 3.4:-92854420 | MS.gene80217:CDS |
| ACTAATGGTGGTGATAATAG+TGG | 0.431222 | 3.4:-92852544 | MS.gene80217:CDS |
| GAAGAAAGCGGCTTGGACTA+AGG | 0.439534 | 3.4:-92853868 | MS.gene80217:CDS |
| TACCTTGTGATAACTGGAAT+CGG | 0.450729 | 3.4:-92854593 | MS.gene80217:CDS |
| TAAACTCTCCAATCATGTTA+AGG | 0.453562 | 3.4:-92854357 | MS.gene80217:CDS |
| AATGTTACCACCTGCTTGGA+TGG | 0.462701 | 3.4:-92852428 | MS.gene80217:CDS |
| AAGACAGCGGGGAGAACAAA+AGG | 0.470694 | 3.4:+92854449 | None:intergenic |
| CATGTTAAGGAACTTGTTCA+AGG | 0.472007 | 3.4:-92854344 | MS.gene80217:CDS |
| GCTAAGATGAAAGGTGAGAT+TGG | 0.475874 | 3.4:-92854074 | MS.gene80217:CDS |
| CTCCCCGCTGTCTTCACTAT+CGG | 0.478414 | 3.4:-92854440 | MS.gene80217:CDS |
| TAAGACTGTCCATGAACAAA+CGG | 0.483381 | 3.4:-92852452 | MS.gene80217:CDS |
| GGGAATAACTGAAGGTGCCA+TGG | 0.487818 | 3.4:-92852521 | MS.gene80217:CDS |
| GAAACAACTACACAGCTGTA+AGG | 0.490449 | 3.4:-92852660 | MS.gene80217:CDS |
| CTCAAGTCCGCGTACCGCCT+CGG | 0.491620 | 3.4:+92852585 | None:intergenic |
| TTTGGGCCAAAAGACACAAA+TGG | 0.502028 | 3.4:-92854132 | MS.gene80217:CDS |
| CGGGAATGTTACCACCTGCT+TGG | 0.507160 | 3.4:-92852432 | MS.gene80217:CDS |
| TGCTTCAATGACAATGGAAG+AGG | 0.507417 | 3.4:-92854291 | MS.gene80217:CDS |
| CTCAAAATCAACCATGTACA+AGG | 0.508124 | 3.4:-92854633 | None:intergenic |
| CTAAGGGATGCTGAGTTACA+AGG | 0.508698 | 3.4:-92853804 | MS.gene80217:CDS |
| GAGAGAAGCTGAAGTGGCTG+AGG | 0.509792 | 3.4:-92853910 | MS.gene80217:CDS |
| CTTGTTCAAGGAATCATTGA+AGG | 0.510892 | 3.4:-92854332 | MS.gene80217:CDS |
| TTGGACTAAGGCGGCTCAAG+TGG | 0.511474 | 3.4:-92853856 | MS.gene80217:CDS |
| GAATCAGAGAGAAGCTGAAG+TGG | 0.511635 | 3.4:-92853916 | MS.gene80217:CDS |
| GTTATTGCGATGCAGAGGGC+TGG | 0.513050 | 3.4:-92853990 | MS.gene80217:CDS |
| GGACCGATAGTGAAGACAGC+GGG | 0.513792 | 3.4:+92854437 | None:intergenic |
| AAGACTGTCCATGAACAAAC+GGG | 0.515531 | 3.4:-92852451 | MS.gene80217:CDS |
| GGCTCAAGTGGCCGAAGTTG+AGG | 0.521394 | 3.4:-92853844 | MS.gene80217:CDS |
| GCTGGAGAGGGCGACAAGGA+GGG | 0.521545 | 3.4:-92853972 | MS.gene80217:CDS |
| GAAGACGGAGTAGGATTGAC+CGG | 0.524836 | 3.4:+92854529 | None:intergenic |
| GAGGGCTGGAGAGGGCGACA+AGG | 0.525696 | 3.4:-92853976 | MS.gene80217:CDS |
| GTAACACTTGGGAATGCTCA+AGG | 0.527999 | 3.4:-92852715 | MS.gene80217:CDS |
| TGCTAAAGCCGTAGCTCTAA+GGG | 0.534229 | 3.4:-92853820 | MS.gene80217:CDS |
| GGAATAACTGAAGGTGCCAT+GGG | 0.534697 | 3.4:-92852520 | MS.gene80217:CDS |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 3.4:+92852504 | None:intergenic |
| GGCAAGACTCCCATCCAAGC+AGG | 0.534806 | 3.4:+92852418 | None:intergenic |
| GCAGAGGGAATTGTAACACT+TGG | 0.536418 | 3.4:-92852727 | MS.gene80217:CDS |
| GGCTGGAGAGGGCGACAAGG+AGG | 0.536888 | 3.4:-92853973 | MS.gene80217:CDS |
| GCTCATTGCTTGAACTTCAA+AGG | 0.540493 | 3.4:+92854484 | None:intergenic |
| GCGATGCAGAGGGCTGGAGA+GGG | 0.540981 | 3.4:-92853984 | MS.gene80217:CDS |
| CTCAGCATCCCTTAGAGCTA+CGG | 0.547484 | 3.4:+92853812 | None:intergenic |
| TGCGATGCAGAGGGCTGGAG+AGG | 0.550159 | 3.4:-92853985 | MS.gene80217:CDS |
| ATTGAACGCTAGCTTTGCTA+AGG | 0.553614 | 3.4:+92853727 | None:intergenic |
| TAAAGCTTGCAAAGAAAGCA+TGG | 0.553863 | 3.4:-92854559 | MS.gene80217:CDS |
| TTAGTTTGGCGTATTTGAGA+AGG | 0.553890 | 3.4:+92854393 | None:intergenic |
| TAAAGTGAGGACTGAAGTGA+AGG | 0.556664 | 3.4:-92853946 | MS.gene80217:CDS |
| TGGCTAAGAAGAAAGCGGCT+TGG | 0.558254 | 3.4:-92853875 | MS.gene80217:CDS |
| AAACAGTTAGTTGATGTGCC+AGG | 0.562976 | 3.4:-92854173 | MS.gene80217:CDS |
| TTTGTATGAGAAGAAGGCAG+AGG | 0.567950 | 3.4:-92852836 | MS.gene80217:CDS |
| ATGTTACCACCTGCTTGGAT+GGG | 0.569893 | 3.4:-92852427 | MS.gene80217:CDS |
| GGAGCTGTACAAGAAACAAA+AGG | 0.571542 | 3.4:-92852872 | MS.gene80217:CDS |
| TCATGGACAGTCTTAAACAA+AGG | 0.574375 | 3.4:+92852460 | None:intergenic |
| TGGAAGCAGCGAATCAAGCA+AGG | 0.574713 | 3.4:-92854112 | MS.gene80217:CDS |
| CTTCACTATCGGTCCTCGTG+TGG | 0.576587 | 3.4:-92854429 | MS.gene80217:CDS |
| TGAGAGGTCGAAGACGGAGT+AGG | 0.579128 | 3.4:+92854520 | None:intergenic |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 3.4:-92852502 | MS.gene80217:CDS |
| TAACACTTGGGAATGCTCAA+GGG | 0.580610 | 3.4:-92852714 | MS.gene80217:CDS |
| CCTCGCTGCTTCAATGACAA+TGG | 0.585018 | 3.4:-92854297 | MS.gene80217:CDS |
| AAACAACTACACAGCTGTAA+GGG | 0.585417 | 3.4:-92852659 | MS.gene80217:CDS |
| CTAATGGTGGTGATAATAGT+GGG | 0.587233 | 3.4:-92852543 | MS.gene80217:CDS |
| GGCTTTAGCAGCCTCAACTT+CGG | 0.588855 | 3.4:+92853833 | None:intergenic |
| ATTAGCATTTGGACTAATGG+TGG | 0.590526 | 3.4:-92852556 | MS.gene80217:CDS |
| GATTGGAGAGTTTATCATGA+GGG | 0.592992 | 3.4:+92854366 | None:intergenic |
| AGTGCACTTCTGAATGCACT+TGG | 0.593608 | 3.4:-92852682 | MS.gene80217:CDS |
| CAAAGGTTATTGCGATGCAG+AGG | 0.594400 | 3.4:-92853995 | MS.gene80217:CDS |
| TTCCGATTCCAGTTATCACA+AGG | 0.603437 | 3.4:+92854591 | None:intergenic |
| GTATCAGAAGCTAAGATGAA+AGG | 0.607033 | 3.4:-92854083 | MS.gene80217:CDS |
| AGTTACAAGGTGAAGTTGAG+AGG | 0.609202 | 3.4:-92853791 | MS.gene80217:CDS |
| ATTGGAGAGTTTATCATGAG+GGG | 0.615848 | 3.4:+92854367 | None:intergenic |
| TGAATTGGCTAAGAAGAAAG+CGG | 0.615999 | 3.4:-92853880 | MS.gene80217:CDS |
| CAGAGGGAATTGTAACACTT+GGG | 0.616845 | 3.4:-92852726 | MS.gene80217:CDS |
| ATAGGTACAAGAAGCAAACT+GGG | 0.617338 | 3.4:-92852893 | MS.gene80217:intron |
| TACAGGTGAGAGGTCGAAGA+CGG | 0.620713 | 3.4:+92854514 | None:intergenic |
| AAAGGTTATTGCGATGCAGA+GGG | 0.625617 | 3.4:-92853994 | MS.gene80217:CDS |
| GTACAAGAAACAAAAGGAGG+CGG | 0.626062 | 3.4:-92852866 | MS.gene80217:CDS |
| AACACTTGGGAATGCTCAAG+GGG | 0.627744 | 3.4:-92852713 | MS.gene80217:CDS |
| AATGGTGGTGATAATAGTGG+GGG | 0.629638 | 3.4:-92852541 | MS.gene80217:CDS |
| AGGTGTAATTTACAGGTGAG+AGG | 0.630097 | 3.4:+92854504 | None:intergenic |
| ATTGGTTCGAAATTAAGGGA+AGG | 0.631020 | 3.4:-92854056 | MS.gene80217:CDS |
| TAATGGTGGTGATAATAGTG+GGG | 0.634711 | 3.4:-92852542 | MS.gene80217:CDS |
| GATTACTTAATGATAAATGG+TGG | 0.642965 | 3.4:-92852637 | MS.gene80217:CDS |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 3.4:-92852602 | MS.gene80217:CDS |
| TGGACAGTCTTAAACAAAGG+TGG | 0.647859 | 3.4:+92852463 | None:intergenic |
| TATGAGAAATATTCATGACC+TGG | 0.653740 | 3.4:+92854155 | None:intergenic |
| AAGACGGAGTAGGATTGACC+GGG | 0.657113 | 3.4:+92854530 | None:intergenic |
| TGCTAAGATTAATGCCGAGG+CGG | 0.661554 | 3.4:-92852599 | MS.gene80217:CDS |
| TAGCGTTCAATATGAAACCA+AGG | 0.661629 | 3.4:-92853715 | MS.gene80217:intron |
| AAGAAAGCATGGATTCTACC+CGG | 0.664070 | 3.4:-92854548 | MS.gene80217:CDS |
| GGAAGCAGCGAATCAAGCAA+GGG | 0.666342 | 3.4:-92854111 | MS.gene80217:CDS |
| TGATTGGAGAGTTTATCATG+AGG | 0.672105 | 3.4:+92854365 | None:intergenic |
| AAGACTCCCATCCAAGCAGG+TGG | 0.679480 | 3.4:+92852421 | None:intergenic |
| ATTAATGCCGAGGCGGTACG+CGG | 0.680968 | 3.4:-92852592 | MS.gene80217:CDS |
| ACAAGGAGGGAATTAAAGTG+AGG | 0.693697 | 3.4:-92853959 | MS.gene80217:CDS |
| CTTTCCTTATCATCCACACG+AGG | 0.701431 | 3.4:+92854416 | None:intergenic |
| CCATTGTCATTGAAGCAGCG+AGG | 0.707893 | 3.4:+92854297 | None:intergenic |
| GACCGATAGTGAAGACAGCG+GGG | 0.713902 | 3.4:+92854438 | None:intergenic |
| GCTGTACAAGAAACAAAAGG+AGG | 0.725038 | 3.4:-92852869 | MS.gene80217:CDS |
| GAAAGCGGCTTGGACTAAGG+CGG | 0.747622 | 3.4:-92853865 | MS.gene80217:CDS |
| AGGACCGATAGTGAAGACAG+CGG | 0.753084 | 3.4:+92854436 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATAGTTAATACCTATT+AGG | - | chr3.4:92854028-92854047 | MS.gene80217:CDS | 15.0% |
| !! | TAGGTATTAACTATTAATTT+AGG | + | chr3.4:92854026-92854045 | None:intergenic | 15.0% |
| !!! | GTTGCATTTTTTTAAATAAT+TGG | - | chr3.4:92853756-92853775 | MS.gene80217:CDS | 15.0% |
| !!! | TGATTATTGATTCTTTTATA+TGG | - | chr3.4:92853723-92853742 | MS.gene80217:CDS | 15.0% |
| !! | CATGAATATTTCTCATATTT+GGG | - | chr3.4:92852870-92852889 | MS.gene80217:CDS | 20.0% |
| !! | TCATGAATATTTCTCATATT+TGG | - | chr3.4:92852869-92852888 | MS.gene80217:CDS | 20.0% |
| !!! | AGTTTAAACAAGAAGTATTT+GGG | - | chr3.4:92852769-92852788 | MS.gene80217:CDS | 20.0% |
| ! | AATTCTCTATTAAGCTGTTA+TGG | + | chr3.4:92853812-92853831 | None:intergenic | 25.0% |
| ! | AGGGATTACTTAATGATAAA+TGG | - | chr3.4:92854379-92854398 | MS.gene80217:CDS | 25.0% |
| ! | ATATATTTACTAGGCCTAAT+AGG | + | chr3.4:92854045-92854064 | None:intergenic | 25.0% |
| ! | ATGCATTATACAATTACAAG+TGG | - | chr3.4:92853980-92853999 | MS.gene80217:CDS | 25.0% |
| ! | CATTTGGTTAAACCTTAAAA+GGG | + | chr3.4:92853583-92853602 | None:intergenic | 25.0% |
| ! | GATTACTTAATGATAAATGG+TGG | - | chr3.4:92854382-92854401 | MS.gene80217:CDS | 25.0% |
| ! | TAGCAACAAGATTAATAGTT+TGG | - | chr3.4:92853458-92853477 | MS.gene80217:intron | 25.0% |
| ! | TCATTTGGTTAAACCTTAAA+AGG | + | chr3.4:92853584-92853603 | None:intergenic | 25.0% |
| ! | TGTAAATCAATAAACCGAAT+TGG | + | chr3.4:92852815-92852834 | None:intergenic | 25.0% |
| !!! | GAGTTTAAACAAGAAGTATT+TGG | - | chr3.4:92852768-92852787 | MS.gene80217:CDS | 25.0% |
| !!! | TTTTTTCGTGATTGAAATTC+TGG | - | chr3.4:92854098-92854117 | MS.gene80217:CDS | 25.0% |
| AAAAATTGATGCAGAGACAA+AGG | - | chr3.4:92853007-92853026 | MS.gene80217:intron | 30.0% | |
| AACAAGTTCCTTAACATGAT+TGG | + | chr3.4:92852673-92852692 | None:intergenic | 30.0% | |
| AAGATTAGCATTTGGACTAA+TGG | - | chr3.4:92854460-92854479 | MS.gene80217:CDS | 30.0% | |
| AGAGCTATATGCAAAGAAAA+AGG | - | chr3.4:92854267-92854286 | MS.gene80217:CDS | 30.0% | |
| ATATTATTCTATCGAGTAGC+GGG | + | chr3.4:92853962-92853981 | None:intergenic | 30.0% | |
| ATTGAAATTCTGGATGGTAT+AGG | - | chr3.4:92854108-92854127 | MS.gene80217:CDS | 30.0% | |
| CAACTTGAACTAAACCAATT+CGG | - | chr3.4:92852798-92852817 | MS.gene80217:CDS | 30.0% | |
| CATATTATTCTATCGAGTAG+CGG | + | chr3.4:92853963-92853982 | None:intergenic | 30.0% | |
| TAAACTCTCCAATCATGTTA+AGG | - | chr3.4:92852662-92852681 | MS.gene80217:CDS | 30.0% | |
| TACTATAATGAGATCACAGT+TGG | - | chr3.4:92853907-92853926 | MS.gene80217:CDS | 30.0% | |
| TATGAGAAATATTCATGACC+TGG | + | chr3.4:92852867-92852886 | None:intergenic | 30.0% | |
| TTAGTCCAAATGCTAATCTT+AGG | + | chr3.4:92854460-92854479 | None:intergenic | 30.0% | |
| ! | ACTTCAAAGGTGTAATTTAC+AGG | + | chr3.4:92852525-92852544 | None:intergenic | 30.0% |
| ! | TCAACACTATTTTACAACCT+TGG | - | chr3.4:92853831-92853850 | MS.gene80217:CDS | 30.0% |
| !! | GTTTTAAACTCTCCCTTTTA+AGG | - | chr3.4:92853568-92853587 | MS.gene80217:intron | 30.0% |
| !! | TATTTTACAACCTTGGTGAT+TGG | - | chr3.4:92853838-92853857 | MS.gene80217:CDS | 30.0% |
| !! | TGAGATTGGTTCGAAATTAA+GGG | - | chr3.4:92852959-92852978 | MS.gene80217:intron | 30.0% |
| AAACAACTACACAGCTGTAA+GGG | - | chr3.4:92854360-92854379 | MS.gene80217:CDS | 35.0% | |
| ACTCATGATCAATGGACAAT+GGG | - | chr3.4:92853609-92853628 | MS.gene80217:intron | 35.0% | |
| ATAGGTACAAGAAGCAAACT+GGG | - | chr3.4:92854126-92854145 | MS.gene80217:CDS | 35.0% | |
| ATCATGAGGGGAAATTAGTT+TGG | + | chr3.4:92852643-92852662 | None:intergenic | 35.0% | |
| ATTAGCATTTGGACTAATGG+TGG | - | chr3.4:92854463-92854482 | MS.gene80217:CDS | 35.0% | |
| ATTGGAGAGTTTATCATGAG+GGG | + | chr3.4:92852655-92852674 | None:intergenic | 35.0% | |
| CTTGTTCAAGGAATCATTGA+AGG | - | chr3.4:92852687-92852706 | MS.gene80217:CDS | 35.0% | |
| GATTGGAGAGTTTATCATGA+GGG | + | chr3.4:92852656-92852675 | None:intergenic | 35.0% | |
| GCTATATGCAAAGAAAAAGG+AGG | - | chr3.4:92854270-92854289 | MS.gene80217:CDS | 35.0% | |
| GTATCAGAAGCTAAGATGAA+AGG | - | chr3.4:92852936-92852955 | MS.gene80217:intron | 35.0% | |
| TAAAGCTTGCAAAGAAAGCA+TGG | - | chr3.4:92852460-92852479 | MS.gene80217:CDS | 35.0% | |
| TAAGACTGTCCATGAACAAA+CGG | - | chr3.4:92854567-92854586 | MS.gene80217:CDS | 35.0% | |
| TACCTTGTGATAACTGGAAT+CGG | - | chr3.4:92852426-92852445 | MS.gene80217:CDS | 35.0% | |
| TAGCGTTCAATATGAAACCA+AGG | - | chr3.4:92853304-92853323 | MS.gene80217:intron | 35.0% | |
| TATAGGTACAAGAAGCAAAC+TGG | - | chr3.4:92854125-92854144 | MS.gene80217:CDS | 35.0% | |
| TATTATTCTATCGAGTAGCG+GGG | + | chr3.4:92853961-92853980 | None:intergenic | 35.0% | |
| TCACAATACCTTGTGATAAC+TGG | - | chr3.4:92852420-92852439 | MS.gene80217:CDS | 35.0% | |
| TCATGGACAGTCTTAAACAA+AGG | + | chr3.4:92854562-92854581 | None:intergenic | 35.0% | |
| TGAATTGGCTAAGAAGAAAG+CGG | - | chr3.4:92853139-92853158 | MS.gene80217:intron | 35.0% | |
| TGATTGGAGAGTTTATCATG+AGG | + | chr3.4:92852657-92852676 | None:intergenic | 35.0% | |
| TGCATGTACTAAACTAACCT+TGG | + | chr3.4:92853324-92853343 | None:intergenic | 35.0% | |
| TTCGTGATTGAAATTCTGGA+TGG | - | chr3.4:92854102-92854121 | MS.gene80217:CDS | 35.0% | |
| TTGAGCCTAAGATTAGCATT+TGG | - | chr3.4:92854452-92854471 | MS.gene80217:CDS | 35.0% | |
| TTGATTGATACCAATCACCA+AGG | + | chr3.4:92853851-92853870 | None:intergenic | 35.0% | |
| ! | ACTAATGGTGGTGATAATAG+TGG | - | chr3.4:92854475-92854494 | MS.gene80217:CDS | 35.0% |
| ! | AGCGATTTTGTATGAGAAGA+AGG | - | chr3.4:92854177-92854196 | MS.gene80217:CDS | 35.0% |
| ! | CATGTTAAGGAACTTGTTCA+AGG | - | chr3.4:92852675-92852694 | MS.gene80217:CDS | 35.0% |
| ! | CTAATGGTGGTGATAATAGT+GGG | - | chr3.4:92854476-92854495 | MS.gene80217:CDS | 35.0% |
| ! | TAATGGTGGTGATAATAGTG+GGG | - | chr3.4:92854477-92854496 | MS.gene80217:CDS | 35.0% |
| ! | TTAGTTTGGCGTATTTGAGA+AGG | + | chr3.4:92852629-92852648 | None:intergenic | 35.0% |
| !! | ATTGGTTCGAAATTAAGGGA+AGG | - | chr3.4:92852963-92852982 | MS.gene80217:intron | 35.0% |
| !! | GTGAGATTGGTTCGAAATTA+AGG | - | chr3.4:92852958-92852977 | MS.gene80217:intron | 35.0% |
| AAAGGTTATTGCGATGCAGA+GGG | - | chr3.4:92853025-92853044 | MS.gene80217:intron | 40.0% | |
| AAGACTGTCCATGAACAAAC+GGG | - | chr3.4:92854568-92854587 | MS.gene80217:CDS | 40.0% | |
| ACAAGGAGGGAATTAAAGTG+AGG | - | chr3.4:92853060-92853079 | MS.gene80217:intron | 40.0% | |
| AGCAACTTCTTTCATACCCA+TGG | + | chr3.4:92854518-92854537 | None:intergenic | 40.0% | |
| AGGTGTAATTTACAGGTGAG+AGG | + | chr3.4:92852518-92852537 | None:intergenic | 40.0% | |
| AGTTACAAGGTGAAGTTGAG+AGG | - | chr3.4:92853228-92853247 | MS.gene80217:intron | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | - | chr3.4:92854517-92854536 | MS.gene80217:CDS | 40.0% | |
| ATTATTCTATCGAGTAGCGG+GGG | + | chr3.4:92853960-92853979 | None:intergenic | 40.0% | |
| CACTCATGATCAATGGACAA+TGG | - | chr3.4:92853608-92853627 | MS.gene80217:intron | 40.0% | |
| CAGAGGGAATTGTAACACTT+GGG | - | chr3.4:92854293-92854312 | MS.gene80217:CDS | 40.0% | |
| GAAACAACTACACAGCTGTA+AGG | - | chr3.4:92854359-92854378 | MS.gene80217:CDS | 40.0% | |
| GATCATGAGTGTGACTCATT+TGG | + | chr3.4:92853599-92853618 | None:intergenic | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | - | chr3.4:92854417-92854436 | MS.gene80217:CDS | 40.0% | |
| GCTAAGATGAAAGGTGAGAT+TGG | - | chr3.4:92852945-92852964 | MS.gene80217:intron | 40.0% | |
| GCTCATTGCTTGAACTTCAA+AGG | + | chr3.4:92852538-92852557 | None:intergenic | 40.0% | |
| GCTGTACAAGAAACAAAAGG+AGG | - | chr3.4:92854150-92854169 | MS.gene80217:CDS | 40.0% | |
| GGAGCTGTACAAGAAACAAA+AGG | - | chr3.4:92854147-92854166 | MS.gene80217:CDS | 40.0% | |
| GTAACATTCCCGTTTGTTCA+TGG | + | chr3.4:92854579-92854598 | None:intergenic | 40.0% | |
| GTACAAGAAACAAAAGGAGG+CGG | - | chr3.4:92854153-92854172 | MS.gene80217:CDS | 40.0% | |
| TAAAGTGAGGACTGAAGTGA+AGG | - | chr3.4:92853073-92853092 | MS.gene80217:intron | 40.0% | |
| TAACACTTGGGAATGCTCAA+GGG | - | chr3.4:92854305-92854324 | MS.gene80217:CDS | 40.0% | |
| TGAGTCACACTCATGATCAA+TGG | - | chr3.4:92853601-92853620 | MS.gene80217:intron | 40.0% | |
| TGCTTCAATGACAATGGAAG+AGG | - | chr3.4:92852728-92852747 | MS.gene80217:CDS | 40.0% | |
| TGGACAGTCTTAAACAAAGG+TGG | + | chr3.4:92854559-92854578 | None:intergenic | 40.0% | |
| TTCCGATTCCAGTTATCACA+AGG | + | chr3.4:92852431-92852450 | None:intergenic | 40.0% | |
| TTTGGGCCAAAAGACACAAA+TGG | - | chr3.4:92852887-92852906 | MS.gene80217:CDS | 40.0% | |
| TTTGTATGAGAAGAAGGCAG+AGG | - | chr3.4:92854183-92854202 | MS.gene80217:CDS | 40.0% | |
| ! | AAACAGTTAGTTGATGTGCC+AGG | - | chr3.4:92852846-92852865 | MS.gene80217:CDS | 40.0% |
| ! | AAGAAAGCATGGATTCTACC+CGG | - | chr3.4:92852471-92852490 | MS.gene80217:CDS | 40.0% |
| ! | AATAGTGGGGGAATAACTGA+AGG | - | chr3.4:92854490-92854509 | MS.gene80217:CDS | 40.0% |
| ! | AATGGTGGTGATAATAGTGG+GGG | - | chr3.4:92854478-92854497 | MS.gene80217:CDS | 40.0% |
| ! | ACAATGGAAGAGGTTTTCAG+AGG | - | chr3.4:92852738-92852757 | MS.gene80217:CDS | 40.0% |
| ! | CTGCTTCCATTTGTGTCTTT+TGG | + | chr3.4:92852896-92852915 | None:intergenic | 40.0% |
| !! | ATTGAACGCTAGCTTTGCTA+AGG | + | chr3.4:92853295-92853314 | None:intergenic | 40.0% |
| AACACTTGGGAATGCTCAAG+GGG | - | chr3.4:92854306-92854325 | MS.gene80217:CDS | 45.0% | |
| AATGTTACCACCTGCTTGGA+TGG | - | chr3.4:92854591-92854610 | MS.gene80217:CDS | 45.0% | |
| AGTGCACTTCTGAATGCACT+TGG | - | chr3.4:92854337-92854356 | MS.gene80217:CDS | 45.0% | |
| ATGTTACCACCTGCTTGGAT+GGG | - | chr3.4:92854592-92854611 | MS.gene80217:CDS | 45.0% | |
| CAAAGGTTATTGCGATGCAG+AGG | - | chr3.4:92853024-92853043 | MS.gene80217:intron | 45.0% | |
| CTAAGGGATGCTGAGTTACA+AGG | - | chr3.4:92853215-92853234 | MS.gene80217:intron | 45.0% | |
| CTTTCCTTATCATCCACACG+AGG | + | chr3.4:92852606-92852625 | None:intergenic | 45.0% | |
| GAATCAGAGAGAAGCTGAAG+TGG | - | chr3.4:92853103-92853122 | MS.gene80217:intron | 45.0% | |
| GCAAAGAAAAAGGAGGCAGA+GGG | - | chr3.4:92854277-92854296 | MS.gene80217:CDS | 45.0% | |
| GCAGAGGGAATTGTAACACT+TGG | - | chr3.4:92854292-92854311 | MS.gene80217:CDS | 45.0% | |
| GGCTGAGGCTAATTCTGAAT+TGG | - | chr3.4:92853124-92853143 | MS.gene80217:intron | 45.0% | |
| GTAACACTTGGGAATGCTCA+AGG | - | chr3.4:92854304-92854323 | MS.gene80217:CDS | 45.0% | |
| TGCAAAGAAAAAGGAGGCAG+AGG | - | chr3.4:92854276-92854295 | MS.gene80217:CDS | 45.0% | |
| TGCTAAGATTAATGCCGAGG+CGG | - | chr3.4:92854420-92854439 | MS.gene80217:CDS | 45.0% | |
| !! | GGAATAACTGAAGGTGCCAT+GGG | - | chr3.4:92854499-92854518 | MS.gene80217:CDS | 45.0% |
| !! | TGCTAAAGCCGTAGCTCTAA+GGG | - | chr3.4:92853199-92853218 | MS.gene80217:intron | 45.0% |
| !! | ATATATATAATATATTTACT+AGG | + | chr3.4:92854054-92854073 | None:intergenic | 5.0% |
| !!! | ATAAAAGATTAATATTTTTA+AGG | - | chr3.4:92853634-92853653 | MS.gene80217:intron | 5.0% |
| AAGACAGCGGGGAGAACAAA+AGG | + | chr3.4:92852573-92852592 | None:intergenic | 50.0% | |
| AAGACGGAGTAGGATTGACC+GGG | + | chr3.4:92852492-92852511 | None:intergenic | 50.0% | |
| AGGACCGATAGTGAAGACAG+CGG | + | chr3.4:92852586-92852605 | None:intergenic | 50.0% | |
| CCATTGTCATTGAAGCAGCG+AGG | + | chr3.4:92852725-92852744 | None:intergenic | 50.0% | |
| CCTCGCTGCTTCAATGACAA+TGG | - | chr3.4:92852722-92852741 | MS.gene80217:CDS | 50.0% | |
| CTCAGCATCCCTTAGAGCTA+CGG | + | chr3.4:92853210-92853229 | None:intergenic | 50.0% | |
| GAAGACGGAGTAGGATTGAC+CGG | + | chr3.4:92852493-92852512 | None:intergenic | 50.0% | |
| GGAAGCAGCGAATCAAGCAA+GGG | - | chr3.4:92852908-92852927 | MS.gene80217:intron | 50.0% | |
| TACAGGTGAGAGGTCGAAGA+CGG | + | chr3.4:92852508-92852527 | None:intergenic | 50.0% | |
| TGGAAGCAGCGAATCAAGCA+AGG | - | chr3.4:92852907-92852926 | MS.gene80217:intron | 50.0% | |
| TGGCTAAGAAGAAAGCGGCT+TGG | - | chr3.4:92853144-92853163 | MS.gene80217:intron | 50.0% | |
| ! | CTGCTAAAGCCGTAGCTCTA+AGG | - | chr3.4:92853198-92853217 | MS.gene80217:intron | 50.0% |
| ! | GAAGAAAGCGGCTTGGACTA+AGG | - | chr3.4:92853151-92853170 | MS.gene80217:intron | 50.0% |
| ! | GGCTTTAGCAGCCTCAACTT+CGG | + | chr3.4:92853189-92853208 | None:intergenic | 50.0% |
| ! | TAGCGGGGGAGCTAACTTTT+GGG | + | chr3.4:92853946-92853965 | None:intergenic | 50.0% |
| !! | GGGAATAACTGAAGGTGCCA+TGG | - | chr3.4:92854498-92854517 | MS.gene80217:CDS | 50.0% |
| AAGACTCCCATCCAAGCAGG+TGG | + | chr3.4:92854601-92854620 | None:intergenic | 55.0% | |
| ATTAATGCCGAGGCGGTACG+CGG | - | chr3.4:92854427-92854446 | MS.gene80217:CDS | 55.0% | |
| CGGGAATGTTACCACCTGCT+TGG | - | chr3.4:92854587-92854606 | MS.gene80217:CDS | 55.0% | |
| CGGTCCTCGTGTGGATGATA+AGG | - | chr3.4:92852599-92852618 | MS.gene80217:CDS | 55.0% | |
| CTCCCCGCTGTCTTCACTAT+CGG | - | chr3.4:92852579-92852598 | MS.gene80217:CDS | 55.0% | |
| CTTCACTATCGGTCCTCGTG+TGG | - | chr3.4:92852590-92852609 | MS.gene80217:CDS | 55.0% | |
| GACCGATAGTGAAGACAGCG+GGG | + | chr3.4:92852584-92852603 | None:intergenic | 55.0% | |
| GAGAGAAGCTGAAGTGGCTG+AGG | - | chr3.4:92853109-92853128 | MS.gene80217:intron | 55.0% | |
| GGACCGATAGTGAAGACAGC+GGG | + | chr3.4:92852585-92852604 | None:intergenic | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | - | chr3.4:92853029-92853048 | MS.gene80217:intron | 55.0% | |
| TGAGAGGTCGAAGACGGAGT+AGG | + | chr3.4:92852502-92852521 | None:intergenic | 55.0% | |
| TTGGACTAAGGCGGCTCAAG+TGG | - | chr3.4:92853163-92853182 | MS.gene80217:intron | 55.0% | |
| ! | GAAAGCGGCTTGGACTAAGG+CGG | - | chr3.4:92853154-92853173 | MS.gene80217:intron | 55.0% |
| !! | GTAGCGGGGGAGCTAACTTT+TGG | + | chr3.4:92853947-92853966 | None:intergenic | 55.0% |
| GGCAAGACTCCCATCCAAGC+AGG | + | chr3.4:92854604-92854623 | None:intergenic | 60.0% | |
| GGCTCAAGTGGCCGAAGTTG+AGG | - | chr3.4:92853175-92853194 | MS.gene80217:intron | 60.0% | |
| CTCAAGTCCGCGTACCGCCT+CGG | + | chr3.4:92854437-92854456 | None:intergenic | 65.0% | |
| GCGATGCAGAGGGCTGGAGA+GGG | - | chr3.4:92853035-92853054 | MS.gene80217:intron | 65.0% | |
| GCTGGAGAGGGCGACAAGGA+GGG | - | chr3.4:92853047-92853066 | MS.gene80217:intron | 65.0% | |
| TGCGATGCAGAGGGCTGGAG+AGG | - | chr3.4:92853034-92853053 | MS.gene80217:intron | 65.0% | |
| GAGGGCTGGAGAGGGCGACA+AGG | - | chr3.4:92853043-92853062 | MS.gene80217:intron | 70.0% | |
| GGCTGGAGAGGGCGACAAGG+AGG | - | chr3.4:92853046-92853065 | MS.gene80217:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 92852399 | 92854642 | 92852399 | ID=MS.gene80217 |
| chr3.4 | mRNA | 92852399 | 92854642 | 92852399 | ID=MS.gene80217.t1;Parent=MS.gene80217 |
| chr3.4 | exon | 92853716 | 92854642 | 92853716 | ID=MS.gene80217.t1.exon1;Parent=MS.gene80217.t1 |
| chr3.4 | CDS | 92853716 | 92854642 | 92853716 | ID=cds.MS.gene80217.t1;Parent=MS.gene80217.t1 |
| chr3.4 | exon | 92852399 | 92852911 | 92852399 | ID=MS.gene80217.t1.exon2;Parent=MS.gene80217.t1 |
| chr3.4 | CDS | 92852399 | 92852911 | 92852399 | ID=cds.MS.gene80217.t1;Parent=MS.gene80217.t1 |
| Gene Sequence |
| Protein sequence |
