Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008210.t1 | XP_003603332.1 | 95.6 | 480 | 21 | 0 | 1 | 480 | 1 | 480 | 4.70E-185 | 657.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008210.t1 | D2XNQ9 | 95.6 | 480 | 21 | 0 | 1 | 480 | 1 | 480 | 1.1e-187 | 657.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008210.t1 | G7JAE4 | 95.6 | 480 | 21 | 0 | 1 | 480 | 1 | 480 | 3.4e-185 | 657.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008210.t1 | MTR_3g106420 | 96.458 | 480 | 17 | 0 | 1 | 480 | 1 | 480 | 0.0 | 942 |
| MS.gene008210.t1 | MTR_3g106480 | 92.259 | 478 | 37 | 0 | 3 | 480 | 1 | 478 | 0.0 | 902 |
| MS.gene008210.t1 | MTR_3g106485 | 93.724 | 478 | 26 | 2 | 3 | 480 | 1 | 474 | 0.0 | 881 |
| MS.gene008210.t1 | MTR_1g083190 | 93.333 | 480 | 24 | 1 | 1 | 480 | 1 | 472 | 0.0 | 876 |
| MS.gene008210.t1 | MTR_1g073400 | 90.167 | 478 | 43 | 1 | 3 | 480 | 1 | 474 | 0.0 | 833 |
| MS.gene008210.t1 | MTR_1g115145 | 88.100 | 479 | 50 | 3 | 3 | 480 | 1 | 473 | 0.0 | 833 |
| MS.gene008210.t1 | MTR_3g106430 | 91.405 | 477 | 37 | 2 | 3 | 479 | 1 | 473 | 0.0 | 829 |
| MS.gene008210.t1 | MTR_1g071130 | 84.937 | 478 | 43 | 2 | 3 | 480 | 1 | 449 | 0.0 | 824 |
| MS.gene008210.t1 | MTR_3g106470 | 83.019 | 477 | 25 | 2 | 3 | 479 | 32 | 452 | 0.0 | 754 |
| MS.gene008210.t1 | MTR_8g063830 | 81.075 | 465 | 47 | 5 | 3 | 466 | 1 | 425 | 0.0 | 674 |
| MS.gene008210.t1 | MTR_3g065540 | 64.348 | 115 | 14 | 1 | 42 | 156 | 14 | 101 | 5.52e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008210.t1 | AT5G25260 | 73.840 | 474 | 112 | 2 | 3 | 476 | 1 | 462 | 0.0 | 726 |
| MS.gene008210.t1 | AT5G25250 | 73.996 | 473 | 109 | 2 | 3 | 475 | 1 | 459 | 0.0 | 715 |
| MS.gene008210.t1 | AT5G64870 | 70.763 | 472 | 127 | 1 | 4 | 475 | 3 | 463 | 0.0 | 654 |
Find 118 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAGTATTTCTCATATT+TGG | 0.110239 | 3.1:+55911721 | MS.gene008210:CDS |
| TTGAGCCTAAGATTAGTATT+TGG | 0.251063 | 3.1:+55912938 | MS.gene008210:CDS |
| CATGAGTATTTCTCATATTT+GGG | 0.292202 | 3.1:+55911722 | MS.gene008210:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.297566 | 3.1:+55912865 | MS.gene008210:CDS |
| CGAAGAAGGCTGTGGCTCTA+AGG | 0.317541 | 3.1:+55912050 | MS.gene008210:CDS |
| GTCAACCCTAGCTTGATTCT+TGG | 0.318930 | 3.1:-55911765 | None:intergenic |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 3.1:+55911797 | MS.gene008210:CDS |
| CATCAAGAATGAAGATTTAC+CGG | 0.319614 | 3.1:+55911237 | None:intergenic |
| AACAAGTTCATTAACGTGAT+TGG | 0.321473 | 3.1:-55911522 | None:intergenic |
| CAACTTGAGTTGAATCAATT+CGG | 0.350972 | 3.1:+55911650 | MS.gene008210:CDS |
| ACTTCGAAGGTGTAGTTTAC+CGG | 0.380695 | 3.1:-55911374 | None:intergenic |
| GTGAAATTGGTTCAAAATTG+AGG | 0.384625 | 3.1:+55911810 | MS.gene008210:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.384650 | 3.1:-55912943 | None:intergenic |
| AAGATTAGTATTTGGACTAA+TGG | 0.384982 | 3.1:+55912946 | MS.gene008210:CDS |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 3.1:+55911685 | MS.gene008210:CDS |
| CAAGACGGTGCAGGATTGAC+TGG | 0.396621 | 3.1:-55911342 | None:intergenic |
| TCAGAATACCTTGTGATAAC+AGG | 0.405430 | 3.1:+55911272 | MS.gene008210:CDS |
| TGTAGGTACAAGAAGCAAAC+TGG | 0.406248 | 3.1:+55912611 | MS.gene008210:intron |
| TGGTCCTCGTGTTGACGATC+AGG | 0.407219 | 3.1:+55911451 | MS.gene008210:CDS |
| GGCTTGGACCAAGGCGGCTC+AGG | 0.413477 | 3.1:+55912012 | MS.gene008210:CDS |
| TGGACTAATGGTGGTGATAA+TGG | 0.423773 | 3.1:+55912958 | MS.gene008210:CDS |
| CACGTTAATGAACTTGTTCA+AGG | 0.425303 | 3.1:+55911527 | MS.gene008210:CDS |
| AGCTGGAGAGGGTGAGAAGG+AGG | 0.426976 | 3.1:+55911898 | MS.gene008210:CDS |
| TTCAGCCACCTGAGCCGCCT+TGG | 0.429757 | 3.1:-55912020 | None:intergenic |
| CATGTTGCCTCCTGCATGGA+TGG | 0.431761 | 3.1:+55913077 | MS.gene008210:CDS |
| TGAAATTGGTTCAAAATTGA+GGG | 0.433449 | 3.1:+55911811 | MS.gene008210:CDS |
| CTCCCCGCTGTCTTCACCAT+TGG | 0.433479 | 3.1:+55911431 | MS.gene008210:CDS |
| CTTTGCATATAGCTCTGCTT+CGG | 0.455229 | 3.1:-55912746 | None:intergenic |
| GCAGAGGGAACCGTGACCCT+TGG | 0.465294 | 3.1:+55912778 | MS.gene008210:CDS |
| GGCTGAAGTTGAGGCGAAGA+AGG | 0.470534 | 3.1:+55912036 | MS.gene008210:CDS |
| CAGAGGGAACCGTGACCCTT+GGG | 0.472084 | 3.1:+55912779 | MS.gene008210:CDS |
| TTGGACCAAGGCGGCTCAGG+TGG | 0.476684 | 3.1:+55912015 | MS.gene008210:CDS |
| CAGTCAATCCTGCACCGTCT+TGG | 0.482767 | 3.1:+55911343 | MS.gene008210:CDS |
| GGACCAATGGTGAAGACAGC+GGG | 0.486586 | 3.1:-55911434 | None:intergenic |
| AAGACTGTCCATGAGCAAAC+AGG | 0.492575 | 3.1:+55913054 | MS.gene008210:CDS |
| ATTCTGATGCTTTCGCGACC+CGG | 0.494061 | 3.1:-55911256 | None:intergenic |
| GAGAGCTGGAGAGGGTGAGA+AGG | 0.498051 | 3.1:+55911895 | MS.gene008210:CDS |
| CTCAAGTCCGCGTATCGCCT+CGG | 0.498347 | 3.1:-55912920 | None:intergenic |
| AAGACAGCGGGGAGAACAAA+AGG | 0.503055 | 3.1:-55911422 | None:intergenic |
| TAAGTTTGTTGTATTTGAGA+AGG | 0.506061 | 3.1:-55911478 | None:intergenic |
| TATCATCAAGTAATCCCTTA+CGG | 0.507171 | 3.1:-55912860 | None:intergenic |
| GCTGGAGAGGGTGAGAAGGA+GGG | 0.508003 | 3.1:+55911899 | MS.gene008210:CDS |
| GTTATTGCGATGCAGAGAGC+TGG | 0.520901 | 3.1:+55911881 | MS.gene008210:CDS |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 3.1:-55913062 | None:intergenic |
| AGCAATTCTGTACGAGAAGA+AGG | 0.521753 | 3.1:+55912663 | MS.gene008210:CDS |
| GAGAACAAAAGGAAGTTTCT+CGG | 0.527868 | 3.1:-55911411 | None:intergenic |
| ATTAGTATTTGGACTAATGG+TGG | 0.532835 | 3.1:+55912949 | MS.gene008210:CDS |
| TGAGAGGTCCAAGACGGTGC+AGG | 0.535402 | 3.1:-55911351 | None:intergenic |
| CACCGTCTTGGACCTCTCAC+CGG | 0.539796 | 3.1:+55911355 | MS.gene008210:CDS |
| TTGAGCATTCCCAAGGGTCA+CGG | 0.540006 | 3.1:-55912788 | None:intergenic |
| GGCTCAAGCTAATTCTGAGT+TGG | 0.541784 | 3.1:+55911976 | MS.gene008210:CDS |
| GGCTCAGGTGGCTGAAGTTG+AGG | 0.543832 | 3.1:+55912027 | MS.gene008210:CDS |
| GAAGAAGGCTGTGGCTCTAA+GGG | 0.545005 | 3.1:+55912051 | MS.gene008210:CDS |
| TGGAAGCCAAGAATCAAGCT+AGG | 0.548842 | 3.1:+55911759 | MS.gene008210:CDS |
| ATATGAGAAATACTCATGAC+CGG | 0.550689 | 3.1:-55911717 | None:intergenic |
| GATAAGGATCCCATCCATGC+AGG | 0.550974 | 3.1:-55913087 | None:intergenic |
| AAGCAATTGGTGGATGTGCC+CGG | 0.551180 | 3.1:+55911698 | MS.gene008210:CDS |
| TAAAGTGAGGACTGAAGTGA+AGG | 0.556664 | 3.1:+55911925 | MS.gene008210:CDS |
| AGTTGAGGCGAAGAAGGCTG+TGG | 0.558891 | 3.1:+55912042 | MS.gene008210:CDS |
| TGCGAATGTTAAGCAATTGG+TGG | 0.563120 | 3.1:+55911688 | MS.gene008210:CDS |
| TAATGGTGGTGATAATGGTG+GGG | 0.564296 | 3.1:+55912963 | MS.gene008210:CDS |
| ATTGAACACTAGCTTTGCTA+AGG | 0.566032 | 3.1:-55912144 | None:intergenic |
| GAAACAACTACACAGCCGTA+AGG | 0.567841 | 3.1:+55912845 | MS.gene008210:CDS |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 3.1:+55912823 | MS.gene008210:CDS |
| GGAATAACTGAAGGTGACAT+TGG | 0.570663 | 3.1:+55912985 | MS.gene008210:CDS |
| GAAAACTTCCTCCATCGTCA+TGG | 0.571023 | 3.1:-55911585 | None:intergenic |
| ATGTTGCCTCCTGCATGGAT+GGG | 0.571620 | 3.1:+55913078 | MS.gene008210:CDS |
| GAAGAAAGCGGCTTGGACCA+AGG | 0.572319 | 3.1:+55912003 | MS.gene008210:CDS |
| AATGGTGGTGATAATGGTGG+GGG | 0.578110 | 3.1:+55912964 | MS.gene008210:CDS |
| ATTGGTTCAAAATTGAGGGA+AGG | 0.580771 | 3.1:+55911815 | MS.gene008210:CDS |
| TGCGATGCAGAGAGCTGGAG+AGG | 0.580805 | 3.1:+55911886 | MS.gene008210:CDS |
| ATCGTCAACACGAGGACCAA+TGG | 0.584843 | 3.1:-55911447 | None:intergenic |
| TGGCTAAGAAGAAAGCGGCT+TGG | 0.585206 | 3.1:+55911996 | MS.gene008210:CDS |
| CTTGTTCAAGGTATCATCGA+AGG | 0.588052 | 3.1:+55911539 | MS.gene008210:CDS |
| ATTGGTATGAAAGAAGTTGC+TGG | 0.588411 | 3.1:+55913003 | MS.gene008210:CDS |
| ACGCTCCTTGAGCATTCCCA+AGG | 0.588853 | 3.1:-55912795 | None:intergenic |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 3.1:+55911955 | MS.gene008210:CDS |
| GTGACCCTTGGGAATGCTCA+AGG | 0.591886 | 3.1:+55912790 | MS.gene008210:CDS |
| AAGACGGTGCAGGATTGACT+GGG | 0.597395 | 3.1:-55911341 | None:intergenic |
| TTGTTCAAGGTATCATCGAA+GGG | 0.598521 | 3.1:+55911540 | MS.gene008210:CDS |
| TCTGTACGAGAAGAAGGCAG+AGG | 0.600808 | 3.1:+55912669 | MS.gene008210:CDS |
| GCGATGCAGAGAGCTGGAGA+GGG | 0.601209 | 3.1:+55911887 | MS.gene008210:CDS |
| ACTCATAGCTTGAACTTCGA+AGG | 0.602674 | 3.1:-55911387 | None:intergenic |
| AGAAGGAGGGAATTAAAGTG+AGG | 0.607130 | 3.1:+55911912 | MS.gene008210:CDS |
| ACTAATGGTGGTGATAATGG+TGG | 0.611329 | 3.1:+55912961 | MS.gene008210:CDS |
| CAGGCATGTTGCCTCCTGCA+TGG | 0.611578 | 3.1:+55913073 | MS.gene008210:CDS |
| ATCAAGAATGAAGATTTACC+GGG | 0.612301 | 3.1:+55911238 | None:intergenic |
| CTAAGGGAAGCTGAGTTGCA+AGG | 0.613783 | 3.1:+55912067 | MS.gene008210:CDS |
| TTTGGGTCAAAAGACGCAGA+TGG | 0.613836 | 3.1:+55911739 | MS.gene008210:CDS |
| GTGTCAGAAGCTAAGATGAA+AGG | 0.614706 | 3.1:+55911788 | MS.gene008210:CDS |
| GTAGGTACAAGAAGCAAACT+GGG | 0.614898 | 3.1:+55912612 | MS.gene008210:intron |
| CTAATGGTGGTGATAATGGT+GGG | 0.616233 | 3.1:+55912962 | MS.gene008210:CDS |
| AGGTGTAGTTTACCGGTGAG+AGG | 0.619207 | 3.1:-55911367 | None:intergenic |
| TCATGGACAGTCTTAAACAA+AGG | 0.619848 | 3.1:-55913045 | None:intergenic |
| TGCTGCTTCCATGACGATGG+AGG | 0.622104 | 3.1:+55911577 | MS.gene008210:CDS |
| AAACAACTACACAGCCGTAA+GGG | 0.623742 | 3.1:+55912846 | MS.gene008210:CDS |
| CGCTCCTTGAGCATTCCCAA+GGG | 0.624114 | 3.1:-55912794 | None:intergenic |
| ATTAATGCCGAGGCGATACG+CGG | 0.629875 | 3.1:+55912913 | MS.gene008210:CDS |
| TGAGTTGGCTAAGAAGAAAG+CGG | 0.631786 | 3.1:+55911991 | MS.gene008210:CDS |
| GGAAGCCAAGAATCAAGCTA+GGG | 0.640292 | 3.1:+55911760 | MS.gene008210:CDS |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 3.1:+55912903 | MS.gene008210:CDS |
| GCTGTACAAGAAACAGAAAG+AGG | 0.643966 | 3.1:+55912636 | MS.gene008210:CDS |
| TATGAGAAATACTCATGACC+GGG | 0.646479 | 3.1:-55911716 | None:intergenic |
| ACTTGCTGCTTCCATGACGA+TGG | 0.648427 | 3.1:+55911574 | MS.gene008210:CDS |
| TGGACAGTCTTAAACAAAGG+TGG | 0.649112 | 3.1:-55913042 | None:intergenic |
| TAGTGTTCAATATGAAACCA+AGG | 0.651992 | 3.1:+55912156 | MS.gene008210:CDS |
| GAAAATTGATGCAGAGACGA+AGG | 0.652587 | 3.1:+55911859 | MS.gene008210:CDS |
| AGTTGCAAGGTGAAGTTGAG+AGG | 0.653383 | 3.1:+55912080 | MS.gene008210:CDS |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 3.1:+55912868 | MS.gene008210:CDS |
| TACCGGTGAGAGGTCCAAGA+CGG | 0.667806 | 3.1:-55911357 | None:intergenic |
| AAGGATCCCATCCATGCAGG+AGG | 0.669522 | 3.1:-55913084 | None:intergenic |
| TGAAAATACCTGTTATCACA+AGG | 0.669974 | 3.1:-55911280 | None:intergenic |
| AGGACCAATGGTGAAGACAG+CGG | 0.683272 | 3.1:-55911435 | None:intergenic |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 3.1:-55911455 | None:intergenic |
| TGTTCAAGGTATCATCGAAG+GGG | 0.695602 | 3.1:+55911541 | MS.gene008210:CDS |
| TGATTGGAGTGTCGATCATG+TGG | 0.697521 | 3.1:-55911506 | None:intergenic |
| GACCAATGGTGAAGACAGCG+GGG | 0.714278 | 3.1:-55911433 | None:intergenic |
| GAAAGCGGCTTGGACCAAGG+CGG | 0.735762 | 3.1:+55912006 | MS.gene008210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATATATATATTATAT+AGG | + | chr3.1:55912250-55912269 | MS.gene008210:intron | 0.0% |
| !!! | ATTTTCAACATTTACTTTTT+AGG | + | chr3.1:55912528-55912547 | MS.gene008210:intron | 15.0% |
| !!! | TTTTTTGGTGATTAAAATTT+TGG | + | chr3.1:55912584-55912603 | MS.gene008210:intron | 15.0% |
| !! | ATATAGGAGATTATTCAATA+TGG | + | chr3.1:55912266-55912285 | MS.gene008210:intron | 20.0% |
| !!! | TCTTATATAGAACACTTTTA+TGG | - | chr3.1:55912502-55912521 | None:intergenic | 20.0% |
| !!! | TTTACTGGATTTTACTTTTT+TGG | + | chr3.1:55912569-55912588 | MS.gene008210:intron | 20.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | + | chr3.1:55912946-55912965 | MS.gene008210:CDS | 25.0% |
| ! | CATGAGTATTTCTCATATTT+GGG | + | chr3.1:55911722-55911741 | MS.gene008210:CDS | 25.0% |
| ! | TCATGAGTATTTCTCATATT+TGG | + | chr3.1:55911721-55911740 | MS.gene008210:CDS | 25.0% |
| ! | TGAAAGAAGTTATATTTGCA+TGG | - | chr3.1:55912192-55912211 | None:intergenic | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | - | chr3.1:55912946-55912965 | None:intergenic | 25.0% |
| !! | ATTAAAATTTTGGATGGTGT+AGG | + | chr3.1:55912594-55912613 | MS.gene008210:intron | 25.0% |
| !! | TGAAATTGGTTCAAAATTGA+GGG | + | chr3.1:55911811-55911830 | MS.gene008210:CDS | 25.0% |
| !!! | AACATTTACTTTTTAGGTGT+TGG | + | chr3.1:55912534-55912553 | MS.gene008210:intron | 25.0% |
| !!! | TAAGTTTGTTGTATTTGAGA+AGG | - | chr3.1:55911481-55911500 | None:intergenic | 25.0% |
| !!! | TGGCTATTTGATAATTTTAC+TGG | + | chr3.1:55912554-55912573 | MS.gene008210:intron | 25.0% |
| !!! | TTGGTGATTAAAATTTTGGA+TGG | + | chr3.1:55912588-55912607 | MS.gene008210:intron | 25.0% |
| AACAAGTTCATTAACGTGAT+TGG | - | chr3.1:55911525-55911544 | None:intergenic | 30.0% | |
| ACAAGACAAAACAATTCAAG+TGG | - | chr3.1:55912477-55912496 | None:intergenic | 30.0% | |
| ATATGAGAAATACTCATGAC+CGG | - | chr3.1:55911720-55911739 | None:intergenic | 30.0% | |
| ATTAGTATTTGGACTAATGG+TGG | + | chr3.1:55912949-55912968 | MS.gene008210:CDS | 30.0% | |
| GCTATATGCAAAGAAAAAAG+AGG | + | chr3.1:55912756-55912775 | MS.gene008210:CDS | 30.0% | |
| TAGTGTTCAATATGAAACCA+AGG | + | chr3.1:55912156-55912175 | MS.gene008210:CDS | 30.0% | |
| TATCATCAAGTAATCCCTTA+CGG | - | chr3.1:55912863-55912882 | None:intergenic | 30.0% | |
| TCAAACTCAAAAAGAAAGCA+TGG | + | chr3.1:55911312-55911331 | MS.gene008210:CDS | 30.0% | |
| TGAAAATACCTGTTATCACA+AGG | - | chr3.1:55911283-55911302 | None:intergenic | 30.0% | |
| TTGAGCCTAAGATTAGTATT+TGG | + | chr3.1:55912938-55912957 | MS.gene008210:CDS | 30.0% | |
| ! | AGGGATTACTTGATGATAAA+TGG | + | chr3.1:55912865-55912884 | MS.gene008210:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | + | chr3.1:55912868-55912887 | MS.gene008210:CDS | 30.0% |
| ! | GTGAAATTGGTTCAAAATTG+AGG | + | chr3.1:55911810-55911829 | MS.gene008210:CDS | 30.0% |
| ! | TTAAGAGCTTTTGTCAGATA+AGG | - | chr3.1:55913106-55913125 | None:intergenic | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+CGG | + | chr3.1:55911650-55911669 | MS.gene008210:CDS | 30.0% |
| ATTGGTATGAAAGAAGTTGC+TGG | + | chr3.1:55913003-55913022 | MS.gene008210:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | + | chr3.1:55911685-55911704 | MS.gene008210:CDS | 35.0% | |
| GAGAACAAAAGGAAGTTTCT+CGG | - | chr3.1:55911414-55911433 | None:intergenic | 35.0% | |
| GATGAGAACAATGTCTGTTT+GGG | + | chr3.1:55912311-55912330 | MS.gene008210:intron | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | + | chr3.1:55911797-55911816 | MS.gene008210:CDS | 35.0% | |
| TATGAGAAATACTCATGACC+GGG | - | chr3.1:55911719-55911738 | None:intergenic | 35.0% | |
| TCAGAATACCTTGTGATAAC+AGG | + | chr3.1:55911272-55911291 | MS.gene008210:CDS | 35.0% | |
| TCATGGACAGTCTTAAACAA+AGG | - | chr3.1:55913048-55913067 | None:intergenic | 35.0% | |
| TGATGAGAACAATGTCTGTT+TGG | + | chr3.1:55912310-55912329 | MS.gene008210:intron | 35.0% | |
| ! | ATTGGTTCAAAATTGAGGGA+AGG | + | chr3.1:55911815-55911834 | MS.gene008210:CDS | 35.0% |
| ! | CACGTTAATGAACTTGTTCA+AGG | + | chr3.1:55911527-55911546 | MS.gene008210:CDS | 35.0% |
| ! | TTGTTCAAGGTATCATCGAA+GGG | + | chr3.1:55911540-55911559 | MS.gene008210:CDS | 35.0% |
| !! | ATTGAACACTAGCTTTGCTA+AGG | - | chr3.1:55912147-55912166 | None:intergenic | 35.0% |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | + | chr3.1:55911946-55911965 | MS.gene008210:CDS | 35.0% |
| AAACAACTACACAGCCGTAA+GGG | + | chr3.1:55912846-55912865 | MS.gene008210:CDS | 40.0% | |
| ACTCATAGCTTGAACTTCGA+AGG | - | chr3.1:55911390-55911409 | None:intergenic | 40.0% | |
| AGAAGGAGGGAATTAAAGTG+AGG | + | chr3.1:55911912-55911931 | MS.gene008210:CDS | 40.0% | |
| AGCAATTCTGTACGAGAAGA+AGG | + | chr3.1:55912663-55912682 | MS.gene008210:CDS | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | + | chr3.1:55912823-55912842 | MS.gene008210:CDS | 40.0% | |
| CAATGTCTGTTTGGGTGTTT+AGG | + | chr3.1:55912319-55912338 | MS.gene008210:intron | 40.0% | |
| GAAAATTGATGCAGAGACGA+AGG | + | chr3.1:55911859-55911878 | MS.gene008210:CDS | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | + | chr3.1:55912903-55912922 | MS.gene008210:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+GGG | + | chr3.1:55912763-55912782 | MS.gene008210:CDS | 40.0% | |
| GCTGTACAAGAAACAGAAAG+AGG | + | chr3.1:55912636-55912655 | MS.gene008210:CDS | 40.0% | |
| GGAATAACTGAAGGTGACAT+TGG | + | chr3.1:55912985-55913004 | MS.gene008210:CDS | 40.0% | |
| GTAGGTACAAGAAGCAAACT+GGG | + | chr3.1:55912612-55912631 | MS.gene008210:intron | 40.0% | |
| GTGTCAGAAGCTAAGATGAA+AGG | + | chr3.1:55911788-55911807 | MS.gene008210:CDS | 40.0% | |
| TAAAGTGAGGACTGAAGTGA+AGG | + | chr3.1:55911925-55911944 | MS.gene008210:CDS | 40.0% | |
| TGCAAAGAAAAAAGAGGCAG+AGG | + | chr3.1:55912762-55912781 | MS.gene008210:CDS | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | + | chr3.1:55911688-55911707 | MS.gene008210:CDS | 40.0% | |
| TGGACAGTCTTAAACAAAGG+TGG | - | chr3.1:55913045-55913064 | None:intergenic | 40.0% | |
| TGTAGGTACAAGAAGCAAAC+TGG | + | chr3.1:55912611-55912630 | MS.gene008210:intron | 40.0% | |
| ! | ACTTCGAAGGTGTAGTTTAC+CGG | - | chr3.1:55911377-55911396 | None:intergenic | 40.0% |
| ! | CTTGTTCAAGGTATCATCGA+AGG | + | chr3.1:55911539-55911558 | MS.gene008210:CDS | 40.0% |
| ! | CTTTGCATATAGCTCTGCTT+CGG | - | chr3.1:55912749-55912768 | None:intergenic | 40.0% |
| ! | TGAGTTGGCTAAGAAGAAAG+CGG | + | chr3.1:55911991-55912010 | MS.gene008210:CDS | 40.0% |
| ! | TGCATGGACTAAACTAACCT+TGG | - | chr3.1:55912176-55912195 | None:intergenic | 40.0% |
| ! | TGGACTAATGGTGGTGATAA+TGG | + | chr3.1:55912958-55912977 | MS.gene008210:CDS | 40.0% |
| ! | TGTTCAAGGTATCATCGAAG+GGG | + | chr3.1:55911541-55911560 | MS.gene008210:CDS | 40.0% |
| !! | ACTAATGGTGGTGATAATGG+TGG | + | chr3.1:55912961-55912980 | MS.gene008210:CDS | 40.0% |
| !! | CTAATGGTGGTGATAATGGT+GGG | + | chr3.1:55912962-55912981 | MS.gene008210:CDS | 40.0% |
| !! | TAATGGTGGTGATAATGGTG+GGG | + | chr3.1:55912963-55912982 | MS.gene008210:CDS | 40.0% |
| AAGACTGTCCATGAGCAAAC+AGG | + | chr3.1:55913054-55913073 | MS.gene008210:CDS | 45.0% | |
| AATGCTTAAGCAATGCCCCA+AGG | - | chr3.1:55912416-55912435 | None:intergenic | 45.0% | |
| ACCAACATAGTCACGCTCAA+TGG | + | chr3.1:55912376-55912395 | MS.gene008210:intron | 45.0% | |
| AGTTGCAAGGTGAAGTTGAG+AGG | + | chr3.1:55912080-55912099 | MS.gene008210:CDS | 45.0% | |
| CCAACATAGTCACGCTCAAT+GGG | + | chr3.1:55912377-55912396 | MS.gene008210:intron | 45.0% | |
| GAAAACTTCCTCCATCGTCA+TGG | - | chr3.1:55911588-55911607 | None:intergenic | 45.0% | |
| GAAACAACTACACAGCCGTA+AGG | + | chr3.1:55912845-55912864 | MS.gene008210:CDS | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | + | chr3.1:55911955-55911974 | MS.gene008210:CDS | 45.0% | |
| GGAAGCCAAGAATCAAGCTA+GGG | + | chr3.1:55911760-55911779 | MS.gene008210:CDS | 45.0% | |
| GGCTCAAGCTAATTCTGAGT+TGG | + | chr3.1:55911976-55911995 | MS.gene008210:CDS | 45.0% | |
| GGGTGGTAATAAGTGTCCTT+GGG | + | chr3.1:55912397-55912416 | MS.gene008210:intron | 45.0% | |
| GGTGGTAATAAGTGTCCTTG+GGG | + | chr3.1:55912398-55912417 | MS.gene008210:intron | 45.0% | |
| GTCAACCCTAGCTTGATTCT+TGG | - | chr3.1:55911768-55911787 | None:intergenic | 45.0% | |
| TGGAAGCCAAGAATCAAGCT+AGG | + | chr3.1:55911759-55911778 | MS.gene008210:CDS | 45.0% | |
| TGGGTGGTAATAAGTGTCCT+TGG | + | chr3.1:55912396-55912415 | MS.gene008210:intron | 45.0% | |
| TTTGGGTCAAAAGACGCAGA+TGG | + | chr3.1:55911739-55911758 | MS.gene008210:CDS | 45.0% | |
| ! | AATGGTGGGGGAATAACTGA+AGG | + | chr3.1:55912976-55912995 | MS.gene008210:CDS | 45.0% |
| ! | ACGATGGAGGAAGTTTTCAG+AGG | + | chr3.1:55911590-55911609 | MS.gene008210:CDS | 45.0% |
| !! | AATGGTGGTGATAATGGTGG+GGG | + | chr3.1:55912964-55912983 | MS.gene008210:CDS | 45.0% |
| !! | TGATTGGAGTGTCGATCATG+TGG | - | chr3.1:55911509-55911528 | None:intergenic | 45.0% |
| AAGACAGCGGGGAGAACAAA+AGG | - | chr3.1:55911425-55911444 | None:intergenic | 50.0% | |
| AAGACGGTGCAGGATTGACT+GGG | - | chr3.1:55911344-55911363 | None:intergenic | 50.0% | |
| ACATAGTCACGCTCAATGGG+TGG | + | chr3.1:55912380-55912399 | MS.gene008210:intron | 50.0% | |
| AGGACCAATGGTGAAGACAG+CGG | - | chr3.1:55911438-55911457 | None:intergenic | 50.0% | |
| AGGTGTAGTTTACCGGTGAG+AGG | - | chr3.1:55911370-55911389 | None:intergenic | 50.0% | |
| ATCGTCAACACGAGGACCAA+TGG | - | chr3.1:55911450-55911469 | None:intergenic | 50.0% | |
| ATGTTGCCTCCTGCATGGAT+GGG | + | chr3.1:55913078-55913097 | MS.gene008210:CDS | 50.0% | |
| ATTAATGCCGAGGCGATACG+CGG | + | chr3.1:55912913-55912932 | MS.gene008210:CDS | 50.0% | |
| ATTCTGATGCTTTCGCGACC+CGG | - | chr3.1:55911259-55911278 | None:intergenic | 50.0% | |
| CCCATTGAGCGTGACTATGT+TGG | - | chr3.1:55912380-55912399 | None:intergenic | 50.0% | |
| CTAAGGGAAGCTGAGTTGCA+AGG | + | chr3.1:55912067-55912086 | MS.gene008210:CDS | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | - | chr3.1:55911458-55911477 | None:intergenic | 50.0% | |
| GATAAGGATCCCATCCATGC+AGG | - | chr3.1:55913090-55913109 | None:intergenic | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | - | chr3.1:55913065-55913084 | None:intergenic | 50.0% | |
| GTTATTGCGATGCAGAGAGC+TGG | + | chr3.1:55911881-55911900 | MS.gene008210:CDS | 50.0% | |
| TCTGTACGAGAAGAAGGCAG+AGG | + | chr3.1:55912669-55912688 | MS.gene008210:CDS | 50.0% | |
| TGGCTAAGAAGAAAGCGGCT+TGG | + | chr3.1:55911996-55912015 | MS.gene008210:CDS | 50.0% | |
| TTGAGCATTCCCAAGGGTCA+CGG | - | chr3.1:55912791-55912810 | None:intergenic | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+CGG | + | chr3.1:55911698-55911717 | MS.gene008210:CDS | 50.0% |
| ! | ACTTGCTGCTTCCATGACGA+TGG | + | chr3.1:55911574-55911593 | MS.gene008210:CDS | 50.0% |
| !! | GAAGAAGGCTGTGGCTCTAA+GGG | + | chr3.1:55912051-55912070 | MS.gene008210:CDS | 50.0% |
| AAGGATCCCATCCATGCAGG+AGG | - | chr3.1:55913087-55913106 | None:intergenic | 55.0% | |
| ACGCTCCTTGAGCATTCCCA+AGG | - | chr3.1:55912798-55912817 | None:intergenic | 55.0% | |
| AGTTGAGGCGAAGAAGGCTG+TGG | + | chr3.1:55912042-55912061 | MS.gene008210:CDS | 55.0% | |
| CAAGACGGTGCAGGATTGAC+TGG | - | chr3.1:55911345-55911364 | None:intergenic | 55.0% | |
| CAGTCAATCCTGCACCGTCT+TGG | + | chr3.1:55911343-55911362 | MS.gene008210:CDS | 55.0% | |
| CATGTTGCCTCCTGCATGGA+TGG | + | chr3.1:55913077-55913096 | MS.gene008210:CDS | 55.0% | |
| CGCTCCTTGAGCATTCCCAA+GGG | - | chr3.1:55912797-55912816 | None:intergenic | 55.0% | |
| GACCAATGGTGAAGACAGCG+GGG | - | chr3.1:55911436-55911455 | None:intergenic | 55.0% | |
| GGACCAATGGTGAAGACAGC+GGG | - | chr3.1:55911437-55911456 | None:intergenic | 55.0% | |
| GGCTGAAGTTGAGGCGAAGA+AGG | + | chr3.1:55912036-55912055 | MS.gene008210:CDS | 55.0% | |
| GTGACCCTTGGGAATGCTCA+AGG | + | chr3.1:55912790-55912809 | MS.gene008210:CDS | 55.0% | |
| TACCGGTGAGAGGTCCAAGA+CGG | - | chr3.1:55911360-55911379 | None:intergenic | 55.0% | |
| ! | CGAAGAAGGCTGTGGCTCTA+AGG | + | chr3.1:55912050-55912069 | MS.gene008210:CDS | 55.0% |
| ! | GAAGAAAGCGGCTTGGACCA+AGG | + | chr3.1:55912003-55912022 | MS.gene008210:CDS | 55.0% |
| ! | TGCTGCTTCCATGACGATGG+AGG | + | chr3.1:55911577-55911596 | MS.gene008210:CDS | 55.0% |
| ! | TGGTCCTCGTGTTGACGATC+AGG | + | chr3.1:55911451-55911470 | MS.gene008210:CDS | 55.0% |
| AGCTGGAGAGGGTGAGAAGG+AGG | + | chr3.1:55911898-55911917 | MS.gene008210:CDS | 60.0% | |
| CACCGTCTTGGACCTCTCAC+CGG | + | chr3.1:55911355-55911374 | MS.gene008210:CDS | 60.0% | |
| CAGAGGGAACCGTGACCCTT+GGG | + | chr3.1:55912779-55912798 | MS.gene008210:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCA+TGG | + | chr3.1:55913073-55913092 | MS.gene008210:CDS | 60.0% | |
| CTCAAGTCCGCGTATCGCCT+CGG | - | chr3.1:55912923-55912942 | None:intergenic | 60.0% | |
| CTCCCCGCTGTCTTCACCAT+TGG | + | chr3.1:55911431-55911450 | MS.gene008210:CDS | 60.0% | |
| GAGAGCTGGAGAGGGTGAGA+AGG | + | chr3.1:55911895-55911914 | MS.gene008210:CDS | 60.0% | |
| GCGATGCAGAGAGCTGGAGA+GGG | + | chr3.1:55911887-55911906 | MS.gene008210:CDS | 60.0% | |
| GCTGGAGAGGGTGAGAAGGA+GGG | + | chr3.1:55911899-55911918 | MS.gene008210:CDS | 60.0% | |
| GGCTCAGGTGGCTGAAGTTG+AGG | + | chr3.1:55912027-55912046 | MS.gene008210:CDS | 60.0% | |
| TGAGAGGTCCAAGACGGTGC+AGG | - | chr3.1:55911354-55911373 | None:intergenic | 60.0% | |
| TGCGATGCAGAGAGCTGGAG+AGG | + | chr3.1:55911886-55911905 | MS.gene008210:CDS | 60.0% | |
| ! | GAAAGCGGCTTGGACCAAGG+CGG | + | chr3.1:55912006-55912025 | MS.gene008210:CDS | 60.0% |
| GCAGAGGGAACCGTGACCCT+TGG | + | chr3.1:55912778-55912797 | MS.gene008210:CDS | 65.0% | |
| TTCAGCCACCTGAGCCGCCT+TGG | - | chr3.1:55912023-55912042 | None:intergenic | 65.0% | |
| TTGGACCAAGGCGGCTCAGG+TGG | + | chr3.1:55912015-55912034 | MS.gene008210:CDS | 65.0% | |
| GGCTTGGACCAAGGCGGCTC+AGG | + | chr3.1:55912012-55912031 | MS.gene008210:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 55911245 | 55913125 | 55911245 | ID=MS.gene008210 |
| chr3.1 | mRNA | 55911245 | 55913125 | 55911245 | ID=MS.gene008210.t1;Parent=MS.gene008210 |
| chr3.1 | exon | 55911245 | 55912177 | 55911245 | ID=MS.gene008210.t1.exon1;Parent=MS.gene008210.t1 |
| chr3.1 | CDS | 55911245 | 55912177 | 55911245 | ID=cds.MS.gene008210.t1;Parent=MS.gene008210.t1 |
| chr3.1 | exon | 55912616 | 55913125 | 55912616 | ID=MS.gene008210.t1.exon2;Parent=MS.gene008210.t1 |
| chr3.1 | CDS | 55912616 | 55913125 | 55912616 | ID=cds.MS.gene008210.t1;Parent=MS.gene008210.t1 |
| Gene Sequence |
| Protein sequence |
