Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005847.t1 | XP_003603332.1 | 89.5 | 478 | 50 | 0 | 1 | 478 | 3 | 480 | 1.50E-167 | 599.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005847.t1 | D2XNQ9 | 89.5 | 478 | 50 | 0 | 1 | 478 | 3 | 480 | 3.6e-170 | 599.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005847.t1 | G7JAE4 | 89.5 | 478 | 50 | 0 | 1 | 478 | 3 | 480 | 1.1e-167 | 599.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005847.t1 | MTR_3g106485 | 96.862 | 478 | 11 | 2 | 1 | 478 | 1 | 474 | 0.0 | 934 |
| MS.gene005847.t1 | MTR_3g106480 | 94.561 | 478 | 26 | 0 | 1 | 478 | 1 | 478 | 0.0 | 924 |
| MS.gene005847.t1 | MTR_3g106420 | 93.515 | 478 | 31 | 0 | 1 | 478 | 3 | 480 | 0.0 | 891 |
| MS.gene005847.t1 | MTR_1g115145 | 89.979 | 479 | 41 | 3 | 1 | 478 | 1 | 473 | 0.0 | 854 |
| MS.gene005847.t1 | MTR_1g073400 | 91.004 | 478 | 39 | 1 | 1 | 478 | 1 | 474 | 0.0 | 847 |
| MS.gene005847.t1 | MTR_1g083190 | 90.377 | 478 | 38 | 1 | 1 | 478 | 3 | 472 | 0.0 | 845 |
| MS.gene005847.t1 | MTR_1g071130 | 85.774 | 478 | 39 | 2 | 1 | 478 | 1 | 449 | 0.0 | 837 |
| MS.gene005847.t1 | MTR_3g106430 | 90.985 | 477 | 39 | 2 | 1 | 477 | 1 | 473 | 0.0 | 827 |
| MS.gene005847.t1 | MTR_3g106470 | 81.761 | 477 | 31 | 2 | 1 | 477 | 32 | 452 | 0.0 | 741 |
| MS.gene005847.t1 | MTR_8g063830 | 80.645 | 465 | 49 | 5 | 1 | 464 | 1 | 425 | 0.0 | 673 |
| MS.gene005847.t1 | MTR_3g065540 | 63.478 | 115 | 15 | 1 | 40 | 154 | 14 | 101 | 9.26e-39 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005847.t1 | AT5G25260 | 74.473 | 474 | 109 | 2 | 1 | 474 | 1 | 462 | 0.0 | 732 |
| MS.gene005847.t1 | AT5G25250 | 73.784 | 473 | 110 | 2 | 1 | 473 | 1 | 459 | 0.0 | 715 |
| MS.gene005847.t1 | AT5G64870 | 70.127 | 472 | 130 | 1 | 2 | 473 | 3 | 463 | 0.0 | 651 |
Find 113 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACGAGTATTTCTCATATC+TGG | 0.226123 | 1.1:+67359744 | MS.gene005847:CDS |
| GGTCCAAGCCGCCTTCTTCT+TGG | 0.241127 | 1.1:-67360022 | None:intergenic |
| TTGAACCTAAGATTAGTATT+TGG | 0.251111 | 1.1:+67360813 | MS.gene005847:CDS |
| CAACTTGAGTTGAATCAATT+CGG | 0.284832 | 1.1:+67359673 | MS.gene005847:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.307216 | 1.1:+67360740 | MS.gene005847:CDS |
| AACAAGTTCATTAACATGAT+TGG | 0.311801 | 1.1:-67359545 | None:intergenic |
| CGAAGAAGGCTGTGGCTCTA+AGG | 0.317541 | 1.1:+67360073 | MS.gene005847:CDS |
| TGTAGGTACAAGAGGCTAAC+TGG | 0.318803 | 1.1:+67360486 | MS.gene005847:intron |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 1.1:+67359820 | MS.gene005847:CDS |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.319807 | 1.1:+67360952 | MS.gene005847:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.325227 | 1.1:-67360818 | None:intergenic |
| CAATGCTAATGTTAAGCAAT+TGG | 0.346020 | 1.1:+67359708 | MS.gene005847:CDS |
| GTGAAATTGGTTCGAAATTG+AGG | 0.356446 | 1.1:+67359833 | MS.gene005847:CDS |
| GGCTTGGACCAAGGCGGCTC+AGG | 0.398702 | 1.1:+67360035 | MS.gene005847:CDS |
| GGCTGGTGAAAGTGAGAAGC+AGG | 0.419667 | 1.1:+67359921 | MS.gene005847:CDS |
| CATGTTAATGAACTTGTTCA+AGG | 0.419850 | 1.1:+67359550 | MS.gene005847:CDS |
| GGGAATAACTGAAGGTGCTA+TGG | 0.428010 | 1.1:+67360859 | MS.gene005847:CDS |
| TTCAGCCACCTGAGCCGCCT+TGG | 0.429757 | 1.1:-67360043 | None:intergenic |
| GAAGAAGGCGGCTTGGACCA+AGG | 0.448835 | 1.1:+67360026 | MS.gene005847:CDS |
| TGGACTAACGGTGGTGATAA+TGG | 0.448931 | 1.1:+67360833 | MS.gene005847:CDS |
| ATCATGGGGTGAAATAAGTT+TGG | 0.453058 | 1.1:-67359515 | None:intergenic |
| AACTTGAGTTGAATCAATTC+GGG | 0.454308 | 1.1:+67359674 | MS.gene005847:CDS |
| CTGGCATGTTGCCTCCTGCT+TGG | 0.459012 | 1.1:+67360948 | MS.gene005847:CDS |
| TGAGAATCAGAGAGAGGCTG+AGG | 0.460493 | 1.1:+67359975 | MS.gene005847:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.462456 | 1.1:+67360538 | MS.gene005847:CDS |
| CTCCCTGCCGTCTTCACTAT+CGG | 0.465580 | 1.1:+67359454 | MS.gene005847:CDS |
| GGCTGAAGTTGAGGCGAAGA+AGG | 0.470534 | 1.1:+67360059 | MS.gene005847:CDS |
| AAGACTGTCCATGAGCAAAC+TGG | 0.472099 | 1.1:+67360929 | MS.gene005847:CDS |
| TTGGACCAAGGCGGCTCAGG+TGG | 0.476684 | 1.1:+67360038 | MS.gene005847:CDS |
| GCAGAGGGGATTGCGACACT+TGG | 0.477405 | 1.1:+67360653 | MS.gene005847:CDS |
| TGAAATTGGTTCGAAATTGA+GGG | 0.484739 | 1.1:+67359834 | MS.gene005847:CDS |
| CACGAGTATTTCTCATATCT+GGG | 0.486594 | 1.1:+67359745 | MS.gene005847:CDS |
| AAACCAAAATCAACATGTAC+CGG | 0.488241 | 1.1:+67359260 | None:intergenic |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.491718 | 1.1:+67360953 | MS.gene005847:CDS |
| CATGATTGGAGTGTCTATCA+TGG | 0.495785 | 1.1:-67359531 | None:intergenic |
| TGCTTCCATGACCATGGAGG+AGG | 0.495947 | 1.1:+67359603 | MS.gene005847:CDS |
| CTTGTTCAAGGAATCATTGA+AGG | 0.497958 | 1.1:+67359562 | MS.gene005847:CDS |
| AACTAAGAAGGTATAGTTCA+CGG | 0.503038 | 1.1:-67359398 | None:intergenic |
| TCAGAATATCTTGCGATCAC+TGG | 0.503111 | 1.1:+67359295 | MS.gene005847:CDS |
| TTCAAGTCCGCGTACCGCCT+CGG | 0.504382 | 1.1:-67360795 | None:intergenic |
| GAAAACCTCCTCCATGGTCA+TGG | 0.505571 | 1.1:-67359608 | None:intergenic |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.506083 | 1.1:+67359782 | MS.gene005847:CDS |
| GAAACAACTACACAGCAGTA+AGG | 0.507741 | 1.1:+67360720 | MS.gene005847:CDS |
| TTCTGAGTTGGCCAAGAAGA+AGG | 0.512333 | 1.1:+67360011 | MS.gene005847:CDS |
| GGACCGATAGTGAAGACGGC+AGG | 0.514852 | 1.1:-67359457 | None:intergenic |
| AAGACGGCAGGGAGAACGAA+AGG | 0.516090 | 1.1:-67359445 | None:intergenic |
| GGAATAACTGAAGGTGCTAT+GGG | 0.526339 | 1.1:+67360860 | MS.gene005847:CDS |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 1.1:+67359721 | MS.gene005847:CDS |
| ACTCATAGCTTGAACTAAGA+AGG | 0.526930 | 1.1:-67359410 | None:intergenic |
| GCAACATGCCAGTTTGCTCA+TGG | 0.527154 | 1.1:-67360937 | None:intergenic |
| TGCTGAGGCTAATTCTGAGT+TGG | 0.528368 | 1.1:+67359999 | MS.gene005847:CDS |
| TAAGTTTGGCGTATTTGAGA+AGG | 0.534048 | 1.1:-67359501 | None:intergenic |
| TGGCCAAGAAGAAGGCGGCT+TGG | 0.538797 | 1.1:+67360019 | MS.gene005847:CDS |
| CTAAGGGAAGCTGAGTTACA+AGG | 0.541402 | 1.1:+67360090 | MS.gene005847:CDS |
| GGCTCAGGTGGCTGAAGTTG+AGG | 0.543832 | 1.1:+67360050 | MS.gene005847:CDS |
| GAAGAAGGCTGTGGCTCTAA+GGG | 0.545005 | 1.1:+67360074 | MS.gene005847:CDS |
| GTTATTGCGATGCAGAGGGC+TGG | 0.549556 | 1.1:+67359904 | MS.gene005847:CDS |
| GTAGGTACAAGAGGCTAACT+GGG | 0.550232 | 1.1:+67360487 | MS.gene005847:intron |
| GATAAGGATCCCATCCAAGC+AGG | 0.550974 | 1.1:-67360962 | None:intergenic |
| CTGGATGCTGTAGGTACAAG+AGG | 0.556449 | 1.1:+67360478 | MS.gene005847:intron |
| AGTTGAGGCGAAGAAGGCTG+TGG | 0.558891 | 1.1:+67360065 | MS.gene005847:CDS |
| TGCTAATGTTAAGCAATTGG+TGG | 0.560962 | 1.1:+67359711 | MS.gene005847:CDS |
| TATCTTGCGATCACTGGTGT+AGG | 0.563196 | 1.1:+67359301 | MS.gene005847:CDS |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.569410 | 1.1:+67360878 | MS.gene005847:CDS |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 1.1:+67360698 | MS.gene005847:CDS |
| TCCTCTGAAAACCTCCTCCA+TGG | 0.572262 | 1.1:-67359614 | None:intergenic |
| CAGAGGGGATTGCGACACTT+GGG | 0.572412 | 1.1:+67360654 | MS.gene005847:CDS |
| ACTAAGAAGGTATAGTTCAC+GGG | 0.573332 | 1.1:-67359397 | None:intergenic |
| AAGATTAGTATTTGGACTAA+CGG | 0.575927 | 1.1:+67360821 | MS.gene005847:CDS |
| GAGAGAGGCTGAGGTTGCTG+AGG | 0.577125 | 1.1:+67359984 | MS.gene005847:CDS |
| TCTAGCTGCTTCCATGACCA+TGG | 0.581097 | 1.1:+67359597 | MS.gene005847:CDS |
| GCGACACTTGGGAATGCTCA+AGG | 0.583461 | 1.1:+67360665 | MS.gene005847:CDS |
| TAAAACTCGAAAAGAAAGCA+TGG | 0.584686 | 1.1:+67359335 | MS.gene005847:CDS |
| CGAAGGTTATTGCGATGCAG+AGG | 0.587186 | 1.1:+67359899 | MS.gene005847:CDS |
| ATGATTGGAGTGTCTATCAT+GGG | 0.587404 | 1.1:-67359530 | None:intergenic |
| AGGTATAGTTCACGGGTGAG+AGG | 0.596809 | 1.1:-67359390 | None:intergenic |
| AACGGTGGTGATAATGGTGG+GGG | 0.598797 | 1.1:+67360839 | MS.gene005847:CDS |
| AAACAACTACACAGCAGTAA+GGG | 0.599439 | 1.1:+67360721 | MS.gene005847:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 1.1:+67360544 | MS.gene005847:CDS |
| GACCGATAGTGAAGACGGCA+GGG | 0.602102 | 1.1:-67359456 | None:intergenic |
| TAACGGTGGTGATAATGGTG+GGG | 0.609681 | 1.1:+67360838 | MS.gene005847:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 1.1:+67359811 | MS.gene005847:CDS |
| TCTGGGACAAAAGACGCAGA+TGG | 0.620243 | 1.1:+67359762 | MS.gene005847:CDS |
| CTAACGGTGGTGATAATGGT+GGG | 0.630678 | 1.1:+67360837 | MS.gene005847:CDS |
| ATTGGTTCGAAATTGAGGGA+AGG | 0.631232 | 1.1:+67359838 | MS.gene005847:CDS |
| AGACGGCAGGGAGAACGAAA+GGG | 0.631236 | 1.1:-67359444 | None:intergenic |
| GGAAGCTGAGTTACAAGGTG+AGG | 0.633609 | 1.1:+67360095 | MS.gene005847:CDS |
| GAAGGTTATTGCGATGCAGA+GGG | 0.633633 | 1.1:+67359900 | MS.gene005847:CDS |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.637623 | 1.1:+67359783 | MS.gene005847:CDS |
| ACGAGGACCGATAGTGAAGA+CGG | 0.639502 | 1.1:-67359461 | None:intergenic |
| AACCAAAATCAACATGTACC+GGG | 0.642639 | 1.1:+67359261 | None:intergenic |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 1.1:+67360778 | MS.gene005847:CDS |
| AGAAGCAGGGAATTAAAGTG+AGG | 0.645883 | 1.1:+67359935 | MS.gene005847:CDS |
| TAGTGTTCAGTATGAAACCA+AGG | 0.647410 | 1.1:+67360179 | MS.gene005847:CDS |
| GAAAATTGATGCAGAGACGA+AGG | 0.652587 | 1.1:+67359882 | MS.gene005847:CDS |
| AAGAAAGCATGGATTTACCC+TGG | 0.654675 | 1.1:+67359346 | MS.gene005847:CDS |
| TGGACAGTCTTAAACAGAGG+TGG | 0.656626 | 1.1:-67360917 | None:intergenic |
| TATGAGAAATACTCGTGACC+AGG | 0.658029 | 1.1:-67359739 | None:intergenic |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 1.1:+67360743 | MS.gene005847:CDS |
| TCATGGACAGTCTTAAACAG+AGG | 0.660499 | 1.1:-67360920 | None:intergenic |
| TGCTAAGATTAATGCCGAGG+CGG | 0.661554 | 1.1:+67360781 | MS.gene005847:CDS |
| AAGGATCCCATCCAAGCAGG+AGG | 0.669522 | 1.1:-67360959 | None:intergenic |
| TGAGTTGGCCAAGAAGAAGG+CGG | 0.669725 | 1.1:+67360014 | MS.gene005847:CDS |
| AGCTGCTTCCATGACCATGG+AGG | 0.676991 | 1.1:+67359600 | MS.gene005847:CDS |
| ATTAATGCCGAGGCGGTACG+CGG | 0.680968 | 1.1:+67360788 | MS.gene005847:CDS |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 1.1:+67359792 | MS.gene005847:CDS |
| ATTAGTATTTGGACTAACGG+TGG | 0.682600 | 1.1:+67360824 | MS.gene005847:CDS |
| CTTTCATGATCGTCAACACG+AGG | 0.689350 | 1.1:-67359478 | None:intergenic |
| GCTGGTGAAAGTGAGAAGCA+GGG | 0.692984 | 1.1:+67359922 | MS.gene005847:CDS |
| ACTAACGGTGGTGATAATGG+TGG | 0.694563 | 1.1:+67360836 | MS.gene005847:CDS |
| TTGCTTGCGAGCATAAAACG+TGG | 0.719700 | 1.1:-67360594 | None:intergenic |
| GAAGGCGGCTTGGACCAAGG+CGG | 0.742023 | 1.1:+67360029 | MS.gene005847:CDS |
| TGATTGGAGTGTCTATCATG+GGG | 0.776734 | 1.1:-67359529 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATTATAAAATTAAATCATT+TGG | + | chr1.1:67360420-67360439 | MS.gene005847:intron | 10.0% |
| !! | AAAATTAAATCATTTGGTAA+CGG | + | chr1.1:67360426-67360445 | MS.gene005847:intron | 15.0% |
| !! | TGCATATTGTTATAAAAAGA+TGG | + | chr1.1:67360323-67360342 | MS.gene005847:intron | 20.0% |
| ! | AACAAGTTCATTAACATGAT+TGG | - | chr1.1:67359548-67359567 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+CGG | + | chr1.1:67360821-67360840 | MS.gene005847:CDS | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | - | chr1.1:67360821-67360840 | None:intergenic | 25.0% |
| ! | TTGAACCTAAGATTAGTATT+TGG | + | chr1.1:67360813-67360832 | MS.gene005847:CDS | 25.0% |
| !! | CTTAATTGAAGTATTACTCT+TGG | - | chr1.1:67360269-67360288 | None:intergenic | 25.0% |
| AACAAGAAGTTATAGTTGCA+TGG | - | chr1.1:67360210-67360229 | None:intergenic | 30.0% | |
| AGCAAATGATGTATGTTCAA+CGG | - | chr1.1:67360388-67360407 | None:intergenic | 30.0% | |
| ATCTGATCAAACTTTCATCA+TGG | + | chr1.1:67360353-67360372 | MS.gene005847:intron | 30.0% | |
| CAATGCTAATGTTAAGCAAT+TGG | + | chr1.1:67359708-67359727 | MS.gene005847:CDS | 30.0% | |
| TAAAACTCGAAAAGAAAGCA+TGG | + | chr1.1:67359335-67359354 | MS.gene005847:CDS | 30.0% | |
| ! | AACTAAGAAGGTATAGTTCA+CGG | - | chr1.1:67359401-67359420 | None:intergenic | 30.0% |
| ! | AGGGATTACTTGATGATAAA+TGG | + | chr1.1:67360740-67360759 | MS.gene005847:CDS | 30.0% |
| ! | CATGTTAATGAACTTGTTCA+AGG | + | chr1.1:67359550-67359569 | MS.gene005847:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | + | chr1.1:67360743-67360762 | MS.gene005847:CDS | 30.0% |
| !! | AACTTGAGTTGAATCAATTC+GGG | + | chr1.1:67359674-67359693 | MS.gene005847:CDS | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+CGG | + | chr1.1:67359673-67359692 | MS.gene005847:CDS | 30.0% |
| !! | GGTGTTTATATTTTAAGTGC+TGG | + | chr1.1:67360447-67360466 | MS.gene005847:intron | 30.0% |
| !! | TGAAATTGGTTCGAAATTGA+GGG | + | chr1.1:67359834-67359853 | MS.gene005847:CDS | 30.0% |
| AAACAACTACACAGCAGTAA+GGG | + | chr1.1:67360721-67360740 | MS.gene005847:CDS | 35.0% | |
| ACTCATAGCTTGAACTAAGA+AGG | - | chr1.1:67359413-67359432 | None:intergenic | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | + | chr1.1:67360538-67360557 | MS.gene005847:CDS | 35.0% | |
| ATCATGGGGTGAAATAAGTT+TGG | - | chr1.1:67359518-67359537 | None:intergenic | 35.0% | |
| ATTAGTATTTGGACTAACGG+TGG | + | chr1.1:67360824-67360843 | MS.gene005847:CDS | 35.0% | |
| CACGAGTATTTCTCATATCT+GGG | + | chr1.1:67359745-67359764 | MS.gene005847:CDS | 35.0% | |
| CTTGTTCAAGGAATCATTGA+AGG | + | chr1.1:67359562-67359581 | MS.gene005847:CDS | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | + | chr1.1:67359820-67359839 | MS.gene005847:CDS | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | + | chr1.1:67360631-67360650 | MS.gene005847:CDS | 35.0% | |
| TAAGTTTGGCGTATTTGAGA+AGG | - | chr1.1:67359504-67359523 | None:intergenic | 35.0% | |
| TAGTGTTCAGTATGAAACCA+AGG | + | chr1.1:67360179-67360198 | MS.gene005847:CDS | 35.0% | |
| TCACGAGTATTTCTCATATC+TGG | + | chr1.1:67359744-67359763 | MS.gene005847:CDS | 35.0% | |
| TGCTAATGTTAAGCAATTGG+TGG | + | chr1.1:67359711-67359730 | MS.gene005847:CDS | 35.0% | |
| ! | ACTAAGAAGGTATAGTTCAC+GGG | - | chr1.1:67359400-67359419 | None:intergenic | 35.0% |
| ! | ATGATTGGAGTGTCTATCAT+GGG | - | chr1.1:67359533-67359552 | None:intergenic | 35.0% |
| ! | TCAAGAGCTTTTGTCAGATA+AGG | - | chr1.1:67360981-67361000 | None:intergenic | 35.0% |
| !! | AGTTTTTGAGAATCAGAGAG+AGG | + | chr1.1:67359969-67359988 | MS.gene005847:CDS | 35.0% |
| !! | GTGAAATTGGTTCGAAATTG+AGG | + | chr1.1:67359833-67359852 | MS.gene005847:CDS | 35.0% |
| !! | TTAAGTGCTGGTTGAAATTC+TGG | + | chr1.1:67360459-67360478 | MS.gene005847:intron | 35.0% |
| AGAAGCAGGGAATTAAAGTG+AGG | + | chr1.1:67359935-67359954 | MS.gene005847:CDS | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | + | chr1.1:67360698-67360717 | MS.gene005847:CDS | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | + | chr1.1:67360878-67360897 | MS.gene005847:CDS | 40.0% | |
| CAAAGAAAAAAGAGGCAGAG+GGG | + | chr1.1:67360639-67360658 | MS.gene005847:CDS | 40.0% | |
| GAAAATTGATGCAGAGACGA+AGG | + | chr1.1:67359882-67359901 | MS.gene005847:CDS | 40.0% | |
| GAAACAACTACACAGCAGTA+AGG | + | chr1.1:67360720-67360739 | MS.gene005847:CDS | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | + | chr1.1:67360778-67360797 | MS.gene005847:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+GGG | + | chr1.1:67360638-67360657 | MS.gene005847:CDS | 40.0% | |
| GTTGAAATTCTGGATGCTGT+AGG | + | chr1.1:67360469-67360488 | MS.gene005847:intron | 40.0% | |
| TATGAGAAATACTCGTGACC+AGG | - | chr1.1:67359742-67359761 | None:intergenic | 40.0% | |
| TCAGAATATCTTGCGATCAC+TGG | + | chr1.1:67359295-67359314 | MS.gene005847:CDS | 40.0% | |
| TCATGGACAGTCTTAAACAG+AGG | - | chr1.1:67360923-67360942 | None:intergenic | 40.0% | |
| TTACCCTGGTCAAAAATGCA+CGG | + | chr1.1:67359360-67359379 | MS.gene005847:CDS | 40.0% | |
| ! | AAGAAAGCATGGATTTACCC+TGG | + | chr1.1:67359346-67359365 | MS.gene005847:CDS | 40.0% |
| ! | ATAGTTGCATGGACTAACCT+TGG | - | chr1.1:67360199-67360218 | None:intergenic | 40.0% |
| ! | ATTCTGATGCTTTTGCTACC+CGG | - | chr1.1:67359282-67359301 | None:intergenic | 40.0% |
| ! | CATGATTGGAGTGTCTATCA+TGG | - | chr1.1:67359534-67359553 | None:intergenic | 40.0% |
| ! | GAGAACGAAAGGGAGTTTTT+CGG | - | chr1.1:67359437-67359456 | None:intergenic | 40.0% |
| ! | TGATTGGAGTGTCTATCATG+GGG | - | chr1.1:67359532-67359551 | None:intergenic | 40.0% |
| !! | ATTGGTTCGAAATTGAGGGA+AGG | + | chr1.1:67359838-67359857 | MS.gene005847:CDS | 40.0% |
| !! | GGAATAACTGAAGGTGCTAT+GGG | + | chr1.1:67360860-67360879 | MS.gene005847:CDS | 40.0% |
| AAGACTGTCCATGAGCAAAC+TGG | + | chr1.1:67360929-67360948 | MS.gene005847:CDS | 45.0% | |
| CGCAAAGAAAAAAGAGGCAG+AGG | + | chr1.1:67360637-67360656 | MS.gene005847:CDS | 45.0% | |
| CTAAGGGAAGCTGAGTTACA+AGG | + | chr1.1:67360090-67360109 | MS.gene005847:CDS | 45.0% | |
| CTTTCATGATCGTCAACACG+AGG | - | chr1.1:67359481-67359500 | None:intergenic | 45.0% | |
| GAAGGTTATTGCGATGCAGA+GGG | + | chr1.1:67359900-67359919 | MS.gene005847:CDS | 45.0% | |
| GTAGGTACAAGAGGCTAACT+GGG | + | chr1.1:67360487-67360506 | MS.gene005847:intron | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | + | chr1.1:67359811-67359830 | MS.gene005847:CDS | 45.0% | |
| TATCTTGCGATCACTGGTGT+AGG | + | chr1.1:67359301-67359320 | MS.gene005847:CDS | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | + | chr1.1:67360544-67360563 | MS.gene005847:CDS | 45.0% | |
| TGCTAAGATTAATGCCGAGG+CGG | + | chr1.1:67360781-67360800 | MS.gene005847:CDS | 45.0% | |
| TGCTGAGGCTAATTCTGAGT+TGG | + | chr1.1:67359999-67360018 | MS.gene005847:CDS | 45.0% | |
| TGGACAGTCTTAAACAGAGG+TGG | - | chr1.1:67360920-67360939 | None:intergenic | 45.0% | |
| TGGACTAACGGTGGTGATAA+TGG | + | chr1.1:67360833-67360852 | MS.gene005847:CDS | 45.0% | |
| TGTAGGTACAAGAGGCTAAC+TGG | + | chr1.1:67360486-67360505 | MS.gene005847:intron | 45.0% | |
| TTGCTTGCGAGCATAAAACG+TGG | - | chr1.1:67360597-67360616 | None:intergenic | 45.0% | |
| ! | AAGACCGTGCATTTTTGACC+AGG | - | chr1.1:67359367-67359386 | None:intergenic | 45.0% |
| ! | AATGGTGGGGGAATAACTGA+AGG | + | chr1.1:67360851-67360870 | MS.gene005847:CDS | 45.0% |
| ! | AGACCGTGCATTTTTGACCA+GGG | - | chr1.1:67359366-67359385 | None:intergenic | 45.0% |
| ! | TTCTGAGTTGGCCAAGAAGA+AGG | + | chr1.1:67360011-67360030 | MS.gene005847:CDS | 45.0% |
| !! | ACTAACGGTGGTGATAATGG+TGG | + | chr1.1:67360836-67360855 | MS.gene005847:CDS | 45.0% |
| !! | CTAACGGTGGTGATAATGGT+GGG | + | chr1.1:67360837-67360856 | MS.gene005847:CDS | 45.0% |
| !! | GGGAATAACTGAAGGTGCTA+TGG | + | chr1.1:67360859-67360878 | MS.gene005847:CDS | 45.0% |
| !! | TAACGGTGGTGATAATGGTG+GGG | + | chr1.1:67360838-67360857 | MS.gene005847:CDS | 45.0% |
| ACGAGGACCGATAGTGAAGA+CGG | - | chr1.1:67359464-67359483 | None:intergenic | 50.0% | |
| AGGTATAGTTCACGGGTGAG+AGG | - | chr1.1:67359393-67359412 | None:intergenic | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | + | chr1.1:67360953-67360972 | MS.gene005847:CDS | 50.0% | |
| CGAAGGTTATTGCGATGCAG+AGG | + | chr1.1:67359899-67359918 | MS.gene005847:CDS | 50.0% | |
| CTGGATGCTGTAGGTACAAG+AGG | + | chr1.1:67360478-67360497 | MS.gene005847:intron | 50.0% | |
| GAAAACCTCCTCCATGGTCA+TGG | - | chr1.1:67359611-67359630 | None:intergenic | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | + | chr1.1:67359792-67359811 | MS.gene005847:CDS | 50.0% | |
| GATAAGGATCCCATCCAAGC+AGG | - | chr1.1:67360965-67360984 | None:intergenic | 50.0% | |
| GCTGGTGAAAGTGAGAAGCA+GGG | + | chr1.1:67359922-67359941 | MS.gene005847:CDS | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | + | chr1.1:67359783-67359802 | MS.gene005847:CDS | 50.0% | |
| GGAAGCTGAGTTACAAGGTG+AGG | + | chr1.1:67360095-67360114 | MS.gene005847:CDS | 50.0% | |
| TCTAGCTGCTTCCATGACCA+TGG | + | chr1.1:67359597-67359616 | MS.gene005847:CDS | 50.0% | |
| TGAGAATCAGAGAGAGGCTG+AGG | + | chr1.1:67359975-67359994 | MS.gene005847:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | + | chr1.1:67359782-67359801 | MS.gene005847:CDS | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | + | chr1.1:67359721-67359740 | MS.gene005847:CDS | 50.0% |
| ! | ACCATGGAGGAGGTTTTCAG+AGG | + | chr1.1:67359613-67359632 | MS.gene005847:CDS | 50.0% |
| ! | GCAACATGCCAGTTTGCTCA+TGG | - | chr1.1:67360940-67360959 | None:intergenic | 50.0% |
| ! | GGCAGAAGCGCAAAAAGCAT+TGG | + | chr1.1:67360565-67360584 | MS.gene005847:CDS | 50.0% |
| ! | TCCTCTGAAAACCTCCTCCA+TGG | - | chr1.1:67359617-67359636 | None:intergenic | 50.0% |
| ! | TCTGGGACAAAAGACGCAGA+TGG | + | chr1.1:67359762-67359781 | MS.gene005847:CDS | 50.0% |
| ! | TGAGTTGGCCAAGAAGAAGG+CGG | + | chr1.1:67360014-67360033 | MS.gene005847:CDS | 50.0% |
| !! | AACGGTGGTGATAATGGTGG+GGG | + | chr1.1:67360839-67360858 | MS.gene005847:CDS | 50.0% |
| !! | GAAGAAGGCTGTGGCTCTAA+GGG | + | chr1.1:67360074-67360093 | MS.gene005847:CDS | 50.0% |
| AAGACGGCAGGGAGAACGAA+AGG | - | chr1.1:67359448-67359467 | None:intergenic | 55.0% | |
| AAGGATCCCATCCAAGCAGG+AGG | - | chr1.1:67360962-67360981 | None:intergenic | 55.0% | |
| AGACGGCAGGGAGAACGAAA+GGG | - | chr1.1:67359447-67359466 | None:intergenic | 55.0% | |
| AGCTGCTTCCATGACCATGG+AGG | + | chr1.1:67359600-67359619 | MS.gene005847:CDS | 55.0% | |
| AGTTGAGGCGAAGAAGGCTG+TGG | + | chr1.1:67360065-67360084 | MS.gene005847:CDS | 55.0% | |
| ATTAATGCCGAGGCGGTACG+CGG | + | chr1.1:67360788-67360807 | MS.gene005847:CDS | 55.0% | |
| CAGAGGGGATTGCGACACTT+GGG | + | chr1.1:67360654-67360673 | MS.gene005847:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | + | chr1.1:67360952-67360971 | MS.gene005847:CDS | 55.0% | |
| CTCCCTGCCGTCTTCACTAT+CGG | + | chr1.1:67359454-67359473 | MS.gene005847:CDS | 55.0% | |
| GACCGATAGTGAAGACGGCA+GGG | - | chr1.1:67359459-67359478 | None:intergenic | 55.0% | |
| GCGACACTTGGGAATGCTCA+AGG | + | chr1.1:67360665-67360684 | MS.gene005847:CDS | 55.0% | |
| GGCTGAAGTTGAGGCGAAGA+AGG | + | chr1.1:67360059-67360078 | MS.gene005847:CDS | 55.0% | |
| GGCTGGTGAAAGTGAGAAGC+AGG | + | chr1.1:67359921-67359940 | MS.gene005847:CDS | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | + | chr1.1:67359904-67359923 | MS.gene005847:CDS | 55.0% | |
| TGCTTCCATGACCATGGAGG+AGG | + | chr1.1:67359603-67359622 | MS.gene005847:CDS | 55.0% | |
| ! | CGAAGAAGGCTGTGGCTCTA+AGG | + | chr1.1:67360073-67360092 | MS.gene005847:CDS | 55.0% |
| CTGGCATGTTGCCTCCTGCT+TGG | + | chr1.1:67360948-67360967 | MS.gene005847:CDS | 60.0% | |
| GAGAGAGGCTGAGGTTGCTG+AGG | + | chr1.1:67359984-67360003 | MS.gene005847:CDS | 60.0% | |
| GCAGAGGGGATTGCGACACT+TGG | + | chr1.1:67360653-67360672 | MS.gene005847:CDS | 60.0% | |
| GGACCGATAGTGAAGACGGC+AGG | - | chr1.1:67359460-67359479 | None:intergenic | 60.0% | |
| GGCTCAGGTGGCTGAAGTTG+AGG | + | chr1.1:67360050-67360069 | MS.gene005847:CDS | 60.0% | |
| GGTCCAAGCCGCCTTCTTCT+TGG | - | chr1.1:67360025-67360044 | None:intergenic | 60.0% | |
| TGGCCAAGAAGAAGGCGGCT+TGG | + | chr1.1:67360019-67360038 | MS.gene005847:CDS | 60.0% | |
| TTCAAGTCCGCGTACCGCCT+CGG | - | chr1.1:67360798-67360817 | None:intergenic | 60.0% | |
| ! | GAAGAAGGCGGCTTGGACCA+AGG | + | chr1.1:67360026-67360045 | MS.gene005847:CDS | 60.0% |
| TTCAGCCACCTGAGCCGCCT+TGG | - | chr1.1:67360046-67360065 | None:intergenic | 65.0% | |
| TTGGACCAAGGCGGCTCAGG+TGG | + | chr1.1:67360038-67360057 | MS.gene005847:CDS | 65.0% | |
| ! | GAAGGCGGCTTGGACCAAGG+CGG | + | chr1.1:67360029-67360048 | MS.gene005847:CDS | 65.0% |
| GGCTTGGACCAAGGCGGCTC+AGG | + | chr1.1:67360035-67360054 | MS.gene005847:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 67359274 | 67361000 | 67359274 | ID=MS.gene005847 |
| chr1.1 | mRNA | 67359274 | 67361000 | 67359274 | ID=MS.gene005847.t1;Parent=MS.gene005847 |
| chr1.1 | exon | 67359274 | 67360200 | 67359274 | ID=MS.gene005847.t1.exon1;Parent=MS.gene005847.t1 |
| chr1.1 | CDS | 67359274 | 67360200 | 67359274 | ID=cds.MS.gene005847.t1;Parent=MS.gene005847.t1 |
| chr1.1 | exon | 67360491 | 67361000 | 67360491 | ID=MS.gene005847.t1.exon2;Parent=MS.gene005847.t1 |
| chr1.1 | CDS | 67360491 | 67361000 | 67360491 | ID=cds.MS.gene005847.t1;Parent=MS.gene005847.t1 |
| Gene Sequence |
| Protein sequence |
