Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32675.t1 | XP_003603332.1 | 86.2 | 480 | 66 | 0 | 1 | 480 | 1 | 480 | 7.80E-164 | 587 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32675.t1 | D2XNQ9 | 86.2 | 480 | 66 | 0 | 1 | 480 | 1 | 480 | 1.9e-166 | 587.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32675.t1 | G7JAE4 | 86.2 | 480 | 66 | 0 | 1 | 480 | 1 | 480 | 5.6e-164 | 587.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32675.t1 | MTR_3g106420 | 96.458 | 480 | 17 | 0 | 1 | 480 | 1 | 480 | 0.0 | 944 |
| MS.gene32675.t1 | MTR_3g106480 | 92.887 | 478 | 34 | 0 | 3 | 480 | 1 | 478 | 0.0 | 907 |
| MS.gene32675.t1 | MTR_3g106485 | 93.724 | 478 | 26 | 2 | 3 | 480 | 1 | 474 | 0.0 | 879 |
| MS.gene32675.t1 | MTR_1g083190 | 93.125 | 480 | 25 | 1 | 1 | 480 | 1 | 472 | 0.0 | 877 |
| MS.gene32675.t1 | MTR_1g115145 | 88.518 | 479 | 48 | 3 | 3 | 480 | 1 | 473 | 0.0 | 835 |
| MS.gene32675.t1 | MTR_1g073400 | 90.377 | 478 | 42 | 1 | 3 | 480 | 1 | 474 | 0.0 | 834 |
| MS.gene32675.t1 | MTR_3g106430 | 91.824 | 477 | 35 | 2 | 3 | 479 | 1 | 473 | 0.0 | 833 |
| MS.gene32675.t1 | MTR_1g071130 | 85.146 | 478 | 42 | 2 | 3 | 480 | 1 | 449 | 0.0 | 825 |
| MS.gene32675.t1 | MTR_3g106470 | 82.809 | 477 | 26 | 2 | 3 | 479 | 32 | 452 | 0.0 | 752 |
| MS.gene32675.t1 | MTR_8g063830 | 79.785 | 465 | 53 | 5 | 3 | 466 | 1 | 425 | 0.0 | 663 |
| MS.gene32675.t1 | MTR_3g065540 | 64.348 | 115 | 14 | 1 | 42 | 156 | 14 | 101 | 6.73e-40 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32675.t1 | AT5G25260 | 73.362 | 473 | 114 | 2 | 3 | 475 | 1 | 461 | 0.0 | 721 |
| MS.gene32675.t1 | AT5G25250 | 73.573 | 473 | 111 | 2 | 3 | 475 | 1 | 459 | 0.0 | 712 |
| MS.gene32675.t1 | AT5G64870 | 69.915 | 472 | 131 | 1 | 4 | 475 | 3 | 463 | 0.0 | 648 |
Find 120 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAGTATTTCTCATATT+TGG | 0.110239 | 3.1:-84428925 | MS.gene32675:CDS |
| TTTAGGTACAAGAAGCAAAT+TGG | 0.249457 | 3.1:-84427472 | MS.gene32675:intron |
| TTGAGCCTAAGATTGGTATT+TGG | 0.265576 | 3.1:-84427145 | MS.gene32675:CDS |
| CATGAGTATTTCTCATATTT+GGG | 0.292202 | 3.1:-84428924 | MS.gene32675:CDS |
| AACAAGTTCATTAACATGAT+TGG | 0.311801 | 3.1:+84429124 | None:intergenic |
| CGAAGAAGGCTGTGGCTCTA+AGG | 0.317541 | 3.1:-84428596 | MS.gene32675:CDS |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 3.1:-84428849 | MS.gene32675:CDS |
| CATCAAGAATGAAAATTTAC+CGG | 0.347355 | 3.1:-84429409 | None:intergenic |
| CTCCCCGCTGTCTTCACAAT+TGG | 0.348065 | 3.1:-84429215 | MS.gene32675:CDS |
| CAACTTGAGTTGAATCAATT+CGG | 0.350972 | 3.1:-84428996 | MS.gene32675:CDS |
| AGAGCTATACACAAAGAAAA+AGG | 0.360858 | 3.1:-84427330 | MS.gene32675:CDS |
| AGAGATTACTTGATGATAAA+TGG | 0.366679 | 3.1:-84427218 | MS.gene32675:CDS |
| GTAACATTCCCGTTTGTTCA+TGG | 0.378374 | 3.1:+84427021 | None:intergenic |
| GTGAAATTGGTTCAAAATTG+AGG | 0.384625 | 3.1:-84428836 | MS.gene32675:CDS |
| ACTTCGAAGGTATAGTTTAC+CGG | 0.387396 | 3.1:+84429272 | None:intergenic |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 3.1:-84428961 | MS.gene32675:CDS |
| TTAGTCCAAATACCAATCTT+AGG | 0.399225 | 3.1:+84427140 | None:intergenic |
| TCATGGACAGTCTTAAATAA+AGG | 0.405157 | 3.1:+84427038 | None:intergenic |
| TCAGAATACCTTGTGATAAC+AGG | 0.405430 | 3.1:-84429374 | MS.gene32675:CDS |
| TGGTCCTCGTGTTGACGATC+AGG | 0.407219 | 3.1:-84429195 | MS.gene32675:CDS |
| GGCTTGGACCAAGGCGGCTC+AGG | 0.413477 | 3.1:-84428634 | MS.gene32675:CDS |
| CATGTTAATGAACTTGTTCA+AGG | 0.419850 | 3.1:-84429119 | MS.gene32675:CDS |
| AGCTGGAGAGGGTGAGAAGG+AGG | 0.426976 | 3.1:-84428748 | MS.gene32675:CDS |
| TTCAGCCACCTGAGCCGCCT+TGG | 0.429757 | 3.1:+84428626 | None:intergenic |
| ATCATGCGGTGAAATAAGTT+TGG | 0.432419 | 3.1:+84429154 | None:intergenic |
| TGAAATTGGTTCAAAATTGA+GGG | 0.433449 | 3.1:-84428835 | MS.gene32675:CDS |
| TGGACTAACGGTGGTGATAA+TGG | 0.448931 | 3.1:-84427125 | MS.gene32675:CDS |
| CGGTCAATCCTGCACCGTCT+TGG | 0.457748 | 3.1:-84429303 | MS.gene32675:CDS |
| TTAGGTACAAGAAGCAAATT+GGG | 0.457872 | 3.1:-84427471 | MS.gene32675:intron |
| AATGTTACCACCTGCTTGGA+TGG | 0.462701 | 3.1:-84427006 | MS.gene32675:CDS |
| CGCGGACTTGAGCCTAAGAT+TGG | 0.464466 | 3.1:-84427152 | MS.gene32675:CDS |
| AAGCAATTGGTGGACGTGCC+CGG | 0.467503 | 3.1:-84428948 | MS.gene32675:CDS |
| TAAGACTGTCCATGAACAAA+CGG | 0.468427 | 3.1:-84427030 | MS.gene32675:CDS |
| CAAGACGGTGCAGGATTGAC+CGG | 0.470050 | 3.1:+84429304 | None:intergenic |
| GGCTGAAGTTGAGGCGAAGA+AGG | 0.470534 | 3.1:-84428610 | MS.gene32675:CDS |
| TTGGACCAAGGCGGCTCAGG+TGG | 0.476684 | 3.1:-84428631 | MS.gene32675:CDS |
| GGGAATAACTGAAGGTGCCA+TGG | 0.487818 | 3.1:-84427099 | MS.gene32675:CDS |
| CTCAAGTCCGCGTACCGCCT+CGG | 0.491620 | 3.1:+84427163 | None:intergenic |
| ATTCTGATGCTTTCGCGACC+CGG | 0.494061 | 3.1:+84429390 | None:intergenic |
| GAGAGCTGGAGAGGGTGAGA+AGG | 0.498051 | 3.1:-84428751 | MS.gene32675:CDS |
| GGACCAATTGTGAAGACAGC+GGG | 0.501529 | 3.1:+84429212 | None:intergenic |
| TGCTTCCATGACGATGGAGG+AGG | 0.505459 | 3.1:-84429066 | MS.gene32675:CDS |
| CGGGAATGTTACCACCTGCT+TGG | 0.507160 | 3.1:-84427010 | MS.gene32675:CDS |
| GCTGGAGAGGGTGAGAAGGA+GGG | 0.508003 | 3.1:-84428747 | MS.gene32675:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.509643 | 3.1:-84427420 | MS.gene32675:CDS |
| AAGACTGTCCATGAACAAAC+GGG | 0.515531 | 3.1:-84427029 | MS.gene32675:CDS |
| AAGACAGCGGGGAGAACAAA+AGG | 0.520506 | 3.1:+84429224 | None:intergenic |
| GTTACTGCGATGCAGAGAGC+TGG | 0.523984 | 3.1:-84428765 | MS.gene32675:CDS |
| GAGAACAAAAGGAAGTTTCT+CGG | 0.527868 | 3.1:+84429235 | None:intergenic |
| TAAGTTTGGCGTATTTGAGA+AGG | 0.534048 | 3.1:+84429168 | None:intergenic |
| GGAATAACTGAAGGTGCCAT+GGG | 0.534697 | 3.1:-84427098 | MS.gene32675:CDS |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 3.1:+84427082 | None:intergenic |
| GGCAAGACTCCCATCCAAGC+AGG | 0.534806 | 3.1:+84426996 | None:intergenic |
| TGAGAGGTCCAAGACGGTGC+AGG | 0.535402 | 3.1:+84429295 | None:intergenic |
| TGCGAATGTTAAGCAATTGG+TGG | 0.535672 | 3.1:-84428958 | MS.gene32675:CDS |
| TGGAAGCAAAGAATCAAGCT+AGG | 0.539726 | 3.1:-84428887 | MS.gene32675:CDS |
| CACCGTCTTGGACCTCTCAC+CGG | 0.539796 | 3.1:-84429291 | MS.gene32675:CDS |
| GGCTCAAGCTAATTCTGAGT+TGG | 0.541784 | 3.1:-84428670 | MS.gene32675:CDS |
| AGAATTAGCTTGAGCCACTT+CGG | 0.542219 | 3.1:+84428677 | None:intergenic |
| GGCTCAGGTGGCTGAAGTTG+AGG | 0.543832 | 3.1:-84428619 | MS.gene32675:CDS |
| GAAGAAGGCTGTGGCTCTAA+GGG | 0.545005 | 3.1:-84428595 | MS.gene32675:CDS |
| GCGGAGGGAATTGTGACACT+TGG | 0.548836 | 3.1:-84427305 | MS.gene32675:CDS |
| ATATGAGAAATACTCATGAC+CGG | 0.550689 | 3.1:+84428929 | None:intergenic |
| TAAAGTGAGGACTGAAGTGA+AGG | 0.556664 | 3.1:-84428721 | MS.gene32675:CDS |
| AGTTGAGGCGAAGAAGGCTG+TGG | 0.558891 | 3.1:-84428604 | MS.gene32675:CDS |
| ACTCATTGCTTGAACTTCGA+AGG | 0.568460 | 3.1:+84429259 | None:intergenic |
| ATGTTACCACCTGCTTGGAT+GGG | 0.569893 | 3.1:-84427005 | MS.gene32675:CDS |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 3.1:-84427260 | MS.gene32675:CDS |
| GAAGAAAGCGGCTTGGACCA+AGG | 0.572319 | 3.1:-84428643 | MS.gene32675:CDS |
| GGCAGAAGCACAGAAAGCGT+CGG | 0.572484 | 3.1:-84427393 | MS.gene32675:CDS |
| GAAAACCTCCTCCATCGTCA+TGG | 0.573319 | 3.1:+84429061 | None:intergenic |
| TGCGATGCAGAGAGCTGGAG+AGG | 0.578322 | 3.1:-84428760 | MS.gene32675:CDS |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 3.1:-84427080 | MS.gene32675:CDS |
| ATTGGTTCAAAATTGAGGGA+AGG | 0.580771 | 3.1:-84428831 | MS.gene32675:CDS |
| AAGATTGGTATTTGGACTAA+CGG | 0.581431 | 3.1:-84427137 | MS.gene32675:CDS |
| GTGACACTTGGGAATGCTCA+AGG | 0.583871 | 3.1:-84427293 | MS.gene32675:CDS |
| TGGCTAAGAAGAAAGCGGCT+TGG | 0.585206 | 3.1:-84428650 | MS.gene32675:CDS |
| ATCAAGAATGAAAATTTACC+GGG | 0.586313 | 3.1:-84429408 | None:intergenic |
| AAGACGGTGCAGGATTGACC+GGG | 0.589066 | 3.1:+84429305 | None:intergenic |
| CGCTGCTTCCATGACGATGG+AGG | 0.591242 | 3.1:-84429069 | MS.gene32675:CDS |
| GCGATGCAGAGAGCTGGAGA+GGG | 0.598726 | 3.1:-84428759 | MS.gene32675:CDS |
| AACGGTGGTGATAATGGTGG+GGG | 0.598797 | 3.1:-84427119 | MS.gene32675:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 3.1:-84427414 | MS.gene32675:CDS |
| CGGAGGGAATTGTGACACTT+GGG | 0.601084 | 3.1:-84427304 | MS.gene32675:CDS |
| CTTGTTCAAGGAATCATCGA+AGG | 0.603463 | 3.1:-84429107 | MS.gene32675:CDS |
| AGTTGCAAGGTGAGGTCGAG+AGG | 0.604843 | 3.1:-84428566 | MS.gene32675:CDS |
| AGAAGGAGGGAATTAAAGTG+AGG | 0.607130 | 3.1:-84428734 | MS.gene32675:CDS |
| AGGTATAGTTTACCGGTGAG+AGG | 0.607470 | 3.1:+84429279 | None:intergenic |
| TAACGGTGGTGATAATGGTG+GGG | 0.609681 | 3.1:-84427120 | MS.gene32675:CDS |
| CTAAGGGAAGCTGAGTTGCA+AGG | 0.613783 | 3.1:-84428579 | MS.gene32675:CDS |
| TTTGGGTCAAAAGACGCAGA+TGG | 0.613836 | 3.1:-84428907 | MS.gene32675:CDS |
| GTGTCAGAAGCTAAGATGAA+AGG | 0.614706 | 3.1:-84428858 | MS.gene32675:CDS |
| TTGTTCAAGGAATCATCGAA+GGG | 0.619293 | 3.1:-84429106 | MS.gene32675:CDS |
| TGGACAGTCTTAAATAAAGG+TGG | 0.623648 | 3.1:+84427041 | None:intergenic |
| GGAAGCAAAGAATCAAGCTA+GGG | 0.626751 | 3.1:-84428886 | MS.gene32675:CDS |
| GTTCATTAACATGATTGGAG+TGG | 0.628854 | 3.1:+84429129 | None:intergenic |
| CTAACGGTGGTGATAATGGT+GGG | 0.630678 | 3.1:-84427121 | MS.gene32675:CDS |
| TGAGTTGGCTAAGAAGAAAG+CGG | 0.631786 | 3.1:-84428655 | MS.gene32675:CDS |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 3.1:-84427180 | MS.gene32675:CDS |
| GCTGTACAAGAAACAGAAAG+AGG | 0.643966 | 3.1:-84427447 | MS.gene32675:CDS |
| ACTCGCTGCTTCCATGACGA+TGG | 0.644314 | 3.1:-84429072 | MS.gene32675:CDS |
| GAATCAAAGAGAGGCCGAAG+TGG | 0.645129 | 3.1:-84428691 | MS.gene32675:CDS |
| TATGAGAAATACTCATGACC+GGG | 0.646479 | 3.1:+84428930 | None:intergenic |
| GGAAGCTGAGTTGCAAGGTG+AGG | 0.648282 | 3.1:-84428574 | MS.gene32675:CDS |
| TAGTGTTCAATATGAAACCA+AGG | 0.651992 | 3.1:-84428490 | MS.gene32675:intron |
| GAAAATTGATGCAGAGACGA+AGG | 0.652587 | 3.1:-84428787 | MS.gene32675:CDS |
| TGCTAAGATTAATGCCGAGG+CGG | 0.661554 | 3.1:-84427177 | MS.gene32675:CDS |
| TACCGGTGAGAGGTCCAAGA+CGG | 0.667806 | 3.1:+84429289 | None:intergenic |
| TGAAAATACCTGTTATCACA+AGG | 0.669974 | 3.1:+84429366 | None:intergenic |
| AAGACTCCCATCCAAGCAGG+TGG | 0.679480 | 3.1:+84426999 | None:intergenic |
| ATTAATGCCGAGGCGGTACG+CGG | 0.680968 | 3.1:-84427170 | MS.gene32675:CDS |
| GATTACTTGATGATAAATGG+TGG | 0.681438 | 3.1:-84427215 | MS.gene32675:CDS |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 3.1:+84429191 | None:intergenic |
| ATTGGTATTTGGACTAACGG+TGG | 0.689273 | 3.1:-84427134 | MS.gene32675:CDS |
| ACTAACGGTGGTGATAATGG+TGG | 0.694563 | 3.1:-84427122 | MS.gene32675:CDS |
| TGATTGGAGTGGCGATCATG+CGG | 0.696244 | 3.1:+84429140 | None:intergenic |
| TGTTCAAGGAATCATCGAAG+GGG | 0.705776 | 3.1:-84429105 | MS.gene32675:CDS |
| GACCAATTGTGAAGACAGCG+GGG | 0.714278 | 3.1:+84429213 | None:intergenic |
| AGGACCAATTGTGAAGACAG+CGG | 0.726189 | 3.1:+84429211 | None:intergenic |
| GAAAGCGGCTTGGACCAAGG+CGG | 0.735762 | 3.1:-84428640 | MS.gene32675:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACTTGTATAATAATTTAT+AGG | + | chr3.1:84428559-84428578 | None:intergenic | 10.0% |
| !! | TATTATAATGAGATCATAAT+TGG | - | chr3.1:84428406-84428425 | MS.gene32675:intron | 15.0% |
| !!! | AATATATATTAATTTGTTGC+TGG | + | chr3.1:84427979-84427998 | None:intergenic | 15.0% |
| !!! | ATCTGATTAAATTTTTATGA+TGG | - | chr3.1:84428634-84428653 | MS.gene32675:CDS | 15.0% |
| !!! | ATTTTTGGTGATTAAAATTT+TGG | - | chr3.1:84428882-84428901 | MS.gene32675:CDS | 15.0% |
| !! | AGAATCAAAGATAATTGTAA+TGG | - | chr3.1:84428363-84428382 | MS.gene32675:intron | 20.0% |
| !! | ATATAGGAGATTATTCAATA+TGG | - | chr3.1:84427999-84428018 | MS.gene32675:intron | 20.0% |
| !! | CTTGTATAATAATTTATAGG+TGG | + | chr3.1:84428556-84428575 | None:intergenic | 20.0% |
| !!! | AAAAGTAGTAACTTTTACAT+TGG | - | chr3.1:84428170-84428189 | MS.gene32675:intron | 20.0% |
| !!! | AACATTTACTTTTTAGATCT+TGG | - | chr3.1:84428834-84428853 | MS.gene32675:CDS | 20.0% |
| !!! | AGTCTAAATTTTTTTTTGAG+AGG | + | chr3.1:84428215-84428234 | None:intergenic | 20.0% |
| !!! | ATTAAAATTTTGGATGGTTT+AGG | - | chr3.1:84428892-84428911 | MS.gene32675:CDS | 20.0% |
| !!! | ATTTTACTGGATTACATTTT+TGG | - | chr3.1:84428867-84428886 | MS.gene32675:CDS | 20.0% |
| !!! | GATTCTCTATAAAACTTTTA+TGG | + | chr3.1:84428261-84428280 | None:intergenic | 20.0% |
| ! | AACAAGTTCATTAACATGAT+TGG | + | chr3.1:84427260-84427279 | None:intergenic | 25.0% |
| ! | ACTTACTGTAGTATGTAATT+TGG | - | chr3.1:84428682-84428701 | MS.gene32675:CDS | 25.0% |
| ! | ATGATCTCATTATAATAGTG+AGG | + | chr3.1:84428403-84428422 | None:intergenic | 25.0% |
| ! | CATGAGTATTTCTCATATTT+GGG | - | chr3.1:84427457-84427476 | MS.gene32675:CDS | 25.0% |
| ! | TCATGAGTATTTCTCATATT+TGG | - | chr3.1:84427456-84427475 | MS.gene32675:CDS | 25.0% |
| ! | TGAAAGAAGTTATATTTGCA+TGG | + | chr3.1:84427927-84427946 | None:intergenic | 25.0% |
| ! | TTGTAAGGTAACATTAACTA+TGG | + | chr3.1:84428520-84428539 | None:intergenic | 25.0% |
| !! | AGAGATTACTTGATGATAAA+TGG | - | chr3.1:84429163-84429182 | MS.gene32675:CDS | 25.0% |
| !! | GTAACTTTTACATTGGAAAT+TGG | - | chr3.1:84428177-84428196 | MS.gene32675:intron | 25.0% |
| !! | TCATGTTAAACAAGTTGAAA+AGG | + | chr3.1:84428769-84428788 | None:intergenic | 25.0% |
| !! | TGAAATTGGTTCAAAATTGA+GGG | - | chr3.1:84427546-84427565 | MS.gene32675:intron | 25.0% |
| !! | TTCGATTGTTTTCTAATTGA+TGG | - | chr3.1:84428484-84428503 | MS.gene32675:intron | 25.0% |
| !!! | CTAAATTTTTTTTTGAGAGG+TGG | + | chr3.1:84428212-84428231 | None:intergenic | 25.0% |
| !!! | TGGCTATTTGATAATTTTAC+TGG | - | chr3.1:84428854-84428873 | MS.gene32675:CDS | 25.0% |
| !!! | TTGGTGATTAAAATTTTGGA+TGG | - | chr3.1:84428886-84428905 | MS.gene32675:CDS | 25.0% |
| AAGATTGGTATTTGGACTAA+CGG | - | chr3.1:84429244-84429263 | MS.gene32675:CDS | 30.0% | |
| AATAGTGAGGTTAAGTAAGT+AGG | + | chr3.1:84428390-84428409 | None:intergenic | 30.0% | |
| ACAGAATATTATTACAGCCT+TGG | - | chr3.1:84428283-84428302 | MS.gene32675:intron | 30.0% | |
| AGAGCTATACACAAAGAAAA+AGG | - | chr3.1:84429051-84429070 | MS.gene32675:CDS | 30.0% | |
| ATATGAGAAATACTCATGAC+CGG | + | chr3.1:84427455-84427474 | None:intergenic | 30.0% | |
| CAATGTCTATTTGGGTATTT+AGG | - | chr3.1:84428052-84428071 | MS.gene32675:intron | 30.0% | |
| GATGTGAACAATGTCTATTT+GGG | - | chr3.1:84428044-84428063 | MS.gene32675:intron | 30.0% | |
| TAGTGTTCAATATGAAACCA+AGG | - | chr3.1:84427891-84427910 | MS.gene32675:intron | 30.0% | |
| TCAAACTCAAAAAGAAAGCA+TGG | - | chr3.1:84427047-84427066 | MS.gene32675:CDS | 30.0% | |
| TCATGGACAGTCTTAAATAA+AGG | + | chr3.1:84429346-84429365 | None:intergenic | 30.0% | |
| TGAAAATACCTGTTATCACA+AGG | + | chr3.1:84427018-84427037 | None:intergenic | 30.0% | |
| TGATGTGAACAATGTCTATT+TGG | - | chr3.1:84428043-84428062 | MS.gene32675:intron | 30.0% | |
| TGCAAACAGATTGAAGAATA+TGG | - | chr3.1:84428728-84428747 | MS.gene32675:CDS | 30.0% | |
| TTAGGTACAAGAAGCAAATT+GGG | - | chr3.1:84428910-84428929 | MS.gene32675:CDS | 30.0% | |
| TTAGTCCAAATACCAATCTT+AGG | + | chr3.1:84429244-84429263 | None:intergenic | 30.0% | |
| TTTAGGTACAAGAAGCAAAT+TGG | - | chr3.1:84428909-84428928 | MS.gene32675:CDS | 30.0% | |
| ! | AAGCTATCTTCTAGTTGTAT+CGG | + | chr3.1:84428465-84428484 | None:intergenic | 30.0% |
| ! | CATGTTAATGAACTTGTTCA+AGG | - | chr3.1:84427262-84427281 | MS.gene32675:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr3.1:84429166-84429185 | MS.gene32675:CDS | 30.0% |
| ! | GTGAAATTGGTTCAAAATTG+AGG | - | chr3.1:84427545-84427564 | MS.gene32675:intron | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+CGG | - | chr3.1:84427385-84427404 | MS.gene32675:CDS | 30.0% |
| AGCAATTCTGTATGAGAAGA+AGG | - | chr3.1:84428961-84428980 | MS.gene32675:CDS | 35.0% | |
| ATACACAAAGAAAAAGGAGG+CGG | - | chr3.1:84429057-84429076 | MS.gene32675:CDS | 35.0% | |
| ATCATGCGGTGAAATAAGTT+TGG | + | chr3.1:84427230-84427249 | None:intergenic | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | - | chr3.1:84427420-84427439 | MS.gene32675:CDS | 35.0% | |
| GAGAACAAAAGGAAGTTTCT+CGG | + | chr3.1:84427149-84427168 | None:intergenic | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | - | chr3.1:84427532-84427551 | MS.gene32675:intron | 35.0% | |
| GCTATACACAAAGAAAAAGG+AGG | - | chr3.1:84429054-84429073 | MS.gene32675:CDS | 35.0% | |
| GGTAACTATGCTTACTTGTA+AGG | + | chr3.1:84428535-84428554 | None:intergenic | 35.0% | |
| GTTCATTAACATGATTGGAG+TGG | + | chr3.1:84427255-84427274 | None:intergenic | 35.0% | |
| TAAGACTGTCCATGAACAAA+CGG | - | chr3.1:84429351-84429370 | MS.gene32675:CDS | 35.0% | |
| TAAGTTTGGCGTATTTGAGA+AGG | + | chr3.1:84427216-84427235 | None:intergenic | 35.0% | |
| TATGAGAAATACTCATGACC+GGG | + | chr3.1:84427454-84427473 | None:intergenic | 35.0% | |
| TCAGAATACCTTGTGATAAC+AGG | - | chr3.1:84427007-84427026 | MS.gene32675:CDS | 35.0% | |
| TGGACAGTCTTAAATAAAGG+TGG | + | chr3.1:84429343-84429362 | None:intergenic | 35.0% | |
| TTGAGCCTAAGATTGGTATT+TGG | - | chr3.1:84429236-84429255 | MS.gene32675:CDS | 35.0% | |
| TTGTTCAAGGAATCATCGAA+GGG | - | chr3.1:84427275-84427294 | MS.gene32675:CDS | 35.0% | |
| ! | ACTTCGAAGGTATAGTTTAC+CGG | + | chr3.1:84427112-84427131 | None:intergenic | 35.0% |
| ! | ATTATTACAGCCTTGGTGAT+TGG | - | chr3.1:84428290-84428309 | MS.gene32675:intron | 35.0% |
| ! | ATTGGTTCAAAATTGAGGGA+AGG | - | chr3.1:84427550-84427569 | MS.gene32675:intron | 35.0% |
| ! | TATCTTCTAGTTGTATCGGT+GGG | + | chr3.1:84428461-84428480 | None:intergenic | 35.0% |
| !! | AAGAAAGCATGGATTTTTCC+CGG | - | chr3.1:84427058-84427077 | MS.gene32675:CDS | 35.0% |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | - | chr3.1:84427681-84427700 | MS.gene32675:intron | 35.0% |
| AAGACTGTCCATGAACAAAC+GGG | - | chr3.1:84429352-84429371 | MS.gene32675:CDS | 40.0% | |
| AATGCTCAAAGAATGCCCTA+AGG | + | chr3.1:84428149-84428168 | None:intergenic | 40.0% | |
| ACTCATTGCTTGAACTTCGA+AGG | + | chr3.1:84427125-84427144 | None:intergenic | 40.0% | |
| AGAAGGAGGGAATTAAAGTG+AGG | - | chr3.1:84427647-84427666 | MS.gene32675:intron | 40.0% | |
| AGCAACTTCTTTCATACCCA+TGG | + | chr3.1:84429302-84429321 | None:intergenic | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | - | chr3.1:84429121-84429140 | MS.gene32675:CDS | 40.0% | |
| ATGCTCAAAGAATGCCCTAA+GGG | + | chr3.1:84428148-84428167 | None:intergenic | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | - | chr3.1:84429301-84429320 | MS.gene32675:CDS | 40.0% | |
| ATTGGTATTTGGACTAACGG+TGG | - | chr3.1:84429247-84429266 | MS.gene32675:CDS | 40.0% | |
| CTTGTTCAAGGAATCATCGA+AGG | - | chr3.1:84427274-84427293 | MS.gene32675:CDS | 40.0% | |
| GAAAATTGATGCAGAGACGA+AGG | - | chr3.1:84427594-84427613 | MS.gene32675:intron | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | - | chr3.1:84429201-84429220 | MS.gene32675:CDS | 40.0% | |
| GCTGTACAAGAAACAGAAAG+AGG | - | chr3.1:84428934-84428953 | MS.gene32675:CDS | 40.0% | |
| GGAAGCAAAGAATCAAGCTA+GGG | - | chr3.1:84427495-84427514 | MS.gene32675:intron | 40.0% | |
| GTAACATTCCCGTTTGTTCA+TGG | + | chr3.1:84429363-84429382 | None:intergenic | 40.0% | |
| GTGTCAGAAGCTAAGATGAA+AGG | - | chr3.1:84427523-84427542 | MS.gene32675:intron | 40.0% | |
| TAAAGTGAGGACTGAAGTGA+AGG | - | chr3.1:84427660-84427679 | MS.gene32675:intron | 40.0% | |
| TGATACTGTACCAATCACCA+AGG | + | chr3.1:84428303-84428322 | None:intergenic | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | - | chr3.1:84427423-84427442 | MS.gene32675:CDS | 40.0% | |
| TGGAAGCAAAGAATCAAGCT+AGG | - | chr3.1:84427494-84427513 | MS.gene32675:intron | 40.0% | |
| TGGCGACAAAACAATTCAAG+TGG | + | chr3.1:84428241-84428260 | None:intergenic | 40.0% | |
| TGTTCAAGGAATCATCGAAG+GGG | - | chr3.1:84427276-84427295 | MS.gene32675:CDS | 40.0% | |
| ! | AGAATTAGCTTGAGCCACTT+CGG | + | chr3.1:84427707-84427726 | None:intergenic | 40.0% |
| ! | ATCTTCTAGTTGTATCGGTG+GGG | + | chr3.1:84428460-84428479 | None:intergenic | 40.0% |
| ! | CTATCTTCTAGTTGTATCGG+TGG | + | chr3.1:84428462-84428481 | None:intergenic | 40.0% |
| ! | TGAGTTGGCTAAGAAGAAAG+CGG | - | chr3.1:84427726-84427745 | MS.gene32675:intron | 40.0% |
| ! | TGCATGGACTAAACTAACCT+TGG | + | chr3.1:84427911-84427930 | None:intergenic | 40.0% |
| AATGTTACCACCTGCTTGGA+TGG | - | chr3.1:84429375-84429394 | MS.gene32675:CDS | 45.0% | |
| ACAAAGAAAAAGGAGGCGGA+GGG | - | chr3.1:84429061-84429080 | MS.gene32675:CDS | 45.0% | |
| ACCAACATAGTCACGCTCAA+TGG | - | chr3.1:84428109-84428128 | MS.gene32675:intron | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | + | chr3.1:84427173-84427192 | None:intergenic | 45.0% | |
| AGGTATAGTTTACCGGTGAG+AGG | + | chr3.1:84427105-84427124 | None:intergenic | 45.0% | |
| ATGTTACCACCTGCTTGGAT+GGG | - | chr3.1:84429376-84429395 | MS.gene32675:CDS | 45.0% | |
| CCAACATAGTCACGCTCAAT+GGG | - | chr3.1:84428110-84428129 | MS.gene32675:intron | 45.0% | |
| GGCTCAAGCTAATTCTGAGT+TGG | - | chr3.1:84427711-84427730 | MS.gene32675:intron | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr3.1:84428967-84428986 | MS.gene32675:CDS | 45.0% | |
| TGCTAAGATTAATGCCGAGG+CGG | - | chr3.1:84429204-84429223 | MS.gene32675:CDS | 45.0% | |
| TGGACTAACGGTGGTGATAA+TGG | - | chr3.1:84429256-84429275 | MS.gene32675:CDS | 45.0% | |
| TTTGGGTCAAAAGACGCAGA+TGG | - | chr3.1:84427474-84427493 | MS.gene32675:intron | 45.0% | |
| ! | AATGGTGGGGGAATAACTGA+AGG | - | chr3.1:84429274-84429293 | MS.gene32675:CDS | 45.0% |
| ! | TCTTCTAGTTGTATCGGTGG+GGG | + | chr3.1:84428459-84428478 | None:intergenic | 45.0% |
| !! | ACTAACGGTGGTGATAATGG+TGG | - | chr3.1:84429259-84429278 | MS.gene32675:CDS | 45.0% |
| !! | CTAACGGTGGTGATAATGGT+GGG | - | chr3.1:84429260-84429279 | MS.gene32675:CDS | 45.0% |
| !! | GGAATAACTGAAGGTGCCAT+GGG | - | chr3.1:84429283-84429302 | MS.gene32675:CDS | 45.0% |
| !! | TAACGGTGGTGATAATGGTG+GGG | - | chr3.1:84429261-84429280 | MS.gene32675:CDS | 45.0% |
| !! | CAAATTAATATATATTATAT+AGG | - | chr3.1:84427983-84428002 | MS.gene32675:intron | 5.0% |
| AAGACAGCGGGGAGAACAAA+AGG | + | chr3.1:84427160-84427179 | None:intergenic | 50.0% | |
| ACATAGTCACGCTCAATGGG+TGG | - | chr3.1:84428113-84428132 | MS.gene32675:intron | 50.0% | |
| ATTCTGATGCTTTCGCGACC+CGG | + | chr3.1:84426994-84427013 | None:intergenic | 50.0% | |
| CACAAAGAAAAAGGAGGCGG+AGG | - | chr3.1:84429060-84429079 | MS.gene32675:CDS | 50.0% | |
| CCCATTGAGCGTGACTATGT+TGG | + | chr3.1:84428113-84428132 | None:intergenic | 50.0% | |
| CGGAGGGAATTGTGACACTT+GGG | - | chr3.1:84429077-84429096 | MS.gene32675:CDS | 50.0% | |
| CTAAGGGAAGCTGAGTTGCA+AGG | - | chr3.1:84427802-84427821 | MS.gene32675:intron | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | + | chr3.1:84427193-84427212 | None:intergenic | 50.0% | |
| GAAAACCTCCTCCATCGTCA+TGG | + | chr3.1:84427323-84427342 | None:intergenic | 50.0% | |
| GAATCAAAGAGAGGCCGAAG+TGG | - | chr3.1:84427690-84427709 | MS.gene32675:intron | 50.0% | |
| GACCAATTGTGAAGACAGCG+GGG | + | chr3.1:84427171-84427190 | None:intergenic | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | + | chr3.1:84427172-84427191 | None:intergenic | 50.0% | |
| GGTGGTAACAAGTGCCCTTA+GGG | - | chr3.1:84428131-84428150 | MS.gene32675:intron | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | - | chr3.1:84429088-84429107 | MS.gene32675:CDS | 50.0% | |
| TGATTGGAGTGGCGATCATG+CGG | + | chr3.1:84427244-84427263 | None:intergenic | 50.0% | |
| TGGCTAAGAAGAAAGCGGCT+TGG | - | chr3.1:84427731-84427750 | MS.gene32675:intron | 50.0% | |
| ! | ACGATGGAGGAGGTTTTCAG+AGG | - | chr3.1:84427325-84427344 | MS.gene32675:CDS | 50.0% |
| !! | AACGGTGGTGATAATGGTGG+GGG | - | chr3.1:84429262-84429281 | MS.gene32675:CDS | 50.0% |
| !! | GAAGAAGGCTGTGGCTCTAA+GGG | - | chr3.1:84427786-84427805 | MS.gene32675:intron | 50.0% |
| !! | GGGAATAACTGAAGGTGCCA+TGG | - | chr3.1:84429282-84429301 | MS.gene32675:CDS | 50.0% |
| AAGACGGTGCAGGATTGACC+GGG | + | chr3.1:84427079-84427098 | None:intergenic | 55.0% | |
| AAGACTCCCATCCAAGCAGG+TGG | + | chr3.1:84429385-84429404 | None:intergenic | 55.0% | |
| ACTCGCTGCTTCCATGACGA+TGG | - | chr3.1:84427309-84427328 | MS.gene32675:CDS | 55.0% | |
| AGTTGAGGCGAAGAAGGCTG+TGG | - | chr3.1:84427777-84427796 | MS.gene32675:intron | 55.0% | |
| AGTTGCAAGGTGAGGTCGAG+AGG | - | chr3.1:84427815-84427834 | MS.gene32675:intron | 55.0% | |
| ATTAATGCCGAGGCGGTACG+CGG | - | chr3.1:84429211-84429230 | MS.gene32675:CDS | 55.0% | |
| CAAGACGGTGCAGGATTGAC+CGG | + | chr3.1:84427080-84427099 | None:intergenic | 55.0% | |
| CGCGGACTTGAGCCTAAGAT+TGG | - | chr3.1:84429229-84429248 | MS.gene32675:CDS | 55.0% | |
| CGGGAATGTTACCACCTGCT+TGG | - | chr3.1:84429371-84429390 | MS.gene32675:CDS | 55.0% | |
| CTCCCCGCTGTCTTCACAAT+TGG | - | chr3.1:84427166-84427185 | MS.gene32675:CDS | 55.0% | |
| GCGGAGGGAATTGTGACACT+TGG | - | chr3.1:84429076-84429095 | MS.gene32675:CDS | 55.0% | |
| GGAAGCTGAGTTGCAAGGTG+AGG | - | chr3.1:84427807-84427826 | MS.gene32675:intron | 55.0% | |
| GGCTGAAGTTGAGGCGAAGA+AGG | - | chr3.1:84427771-84427790 | MS.gene32675:intron | 55.0% | |
| GGGTGGTAACAAGTGCCCTT+AGG | - | chr3.1:84428130-84428149 | MS.gene32675:intron | 55.0% | |
| GTTACTGCGATGCAGAGAGC+TGG | - | chr3.1:84427616-84427635 | MS.gene32675:intron | 55.0% | |
| TACCGGTGAGAGGTCCAAGA+CGG | + | chr3.1:84427095-84427114 | None:intergenic | 55.0% | |
| TGCTTCCATGACGATGGAGG+AGG | - | chr3.1:84427315-84427334 | MS.gene32675:CDS | 55.0% | |
| ! | AAGCAATTGGTGGACGTGCC+CGG | - | chr3.1:84427433-84427452 | MS.gene32675:CDS | 55.0% |
| ! | CGAAGAAGGCTGTGGCTCTA+AGG | - | chr3.1:84427785-84427804 | MS.gene32675:intron | 55.0% |
| ! | GAAGAAAGCGGCTTGGACCA+AGG | - | chr3.1:84427738-84427757 | MS.gene32675:intron | 55.0% |
| ! | GGCAGAAGCACAGAAAGCGT+CGG | - | chr3.1:84428988-84429007 | MS.gene32675:CDS | 55.0% |
| ! | TGGTCCTCGTGTTGACGATC+AGG | - | chr3.1:84427186-84427205 | MS.gene32675:CDS | 55.0% |
| !! | CGGTGGGGGTTCTGACTTTT+GGG | + | chr3.1:84428445-84428464 | None:intergenic | 55.0% |
| !! | TCGGTGGGGGTTCTGACTTT+TGG | + | chr3.1:84428446-84428465 | None:intergenic | 55.0% |
| AGCTGGAGAGGGTGAGAAGG+AGG | - | chr3.1:84427633-84427652 | MS.gene32675:intron | 60.0% | |
| CACCGTCTTGGACCTCTCAC+CGG | - | chr3.1:84427090-84427109 | MS.gene32675:CDS | 60.0% | |
| CGCTGCTTCCATGACGATGG+AGG | - | chr3.1:84427312-84427331 | MS.gene32675:CDS | 60.0% | |
| CGGTCAATCCTGCACCGTCT+TGG | - | chr3.1:84427078-84427097 | MS.gene32675:CDS | 60.0% | |
| GAGAGCTGGAGAGGGTGAGA+AGG | - | chr3.1:84427630-84427649 | MS.gene32675:intron | 60.0% | |
| GCGATGCAGAGAGCTGGAGA+GGG | - | chr3.1:84427622-84427641 | MS.gene32675:intron | 60.0% | |
| GCTGGAGAGGGTGAGAAGGA+GGG | - | chr3.1:84427634-84427653 | MS.gene32675:intron | 60.0% | |
| GGCAAGACTCCCATCCAAGC+AGG | + | chr3.1:84429388-84429407 | None:intergenic | 60.0% | |
| GGCTCAGGTGGCTGAAGTTG+AGG | - | chr3.1:84427762-84427781 | MS.gene32675:intron | 60.0% | |
| TGAGAGGTCCAAGACGGTGC+AGG | + | chr3.1:84427089-84427108 | None:intergenic | 60.0% | |
| TGCGATGCAGAGAGCTGGAG+AGG | - | chr3.1:84427621-84427640 | MS.gene32675:intron | 60.0% | |
| ! | GAAAGCGGCTTGGACCAAGG+CGG | - | chr3.1:84427741-84427760 | MS.gene32675:intron | 60.0% |
| CTCAAGTCCGCGTACCGCCT+CGG | + | chr3.1:84429221-84429240 | None:intergenic | 65.0% | |
| TTCAGCCACCTGAGCCGCCT+TGG | + | chr3.1:84427758-84427777 | None:intergenic | 65.0% | |
| TTGGACCAAGGCGGCTCAGG+TGG | - | chr3.1:84427750-84427769 | MS.gene32675:intron | 65.0% | |
| GGCTTGGACCAAGGCGGCTC+AGG | - | chr3.1:84427747-84427766 | MS.gene32675:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 84426980 | 84429423 | 84426980 | ID=MS.gene32675 |
| chr3.1 | mRNA | 84426980 | 84429423 | 84426980 | ID=MS.gene32675.t1;Parent=MS.gene32675 |
| chr3.1 | exon | 84428491 | 84429423 | 84428491 | ID=MS.gene32675.t1.exon1;Parent=MS.gene32675.t1 |
| chr3.1 | CDS | 84428491 | 84429423 | 84428491 | ID=cds.MS.gene32675.t1;Parent=MS.gene32675.t1 |
| chr3.1 | exon | 84426980 | 84427489 | 84426980 | ID=MS.gene32675.t1.exon2;Parent=MS.gene32675.t1 |
| chr3.1 | CDS | 84426980 | 84427489 | 84426980 | ID=cds.MS.gene32675.t1;Parent=MS.gene32675.t1 |
| Gene Sequence |
| Protein sequence |
