Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24858.t1 | XP_013468625.1 | 94.5 | 474 | 26 | 0 | 1 | 474 | 1 | 474 | 3.90E-184 | 654.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24858.t1 | D2XNQ8 | 88.5 | 478 | 51 | 1 | 1 | 474 | 1 | 478 | 1.3e-175 | 617.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24858.t1 | A0A072VLE3 | 94.5 | 474 | 26 | 0 | 1 | 474 | 1 | 474 | 2.8e-184 | 654.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051839 | MS.gene24858 | 0.959955 | 5.15E-118 | -1.69E-46 |
| MS.gene051841 | MS.gene24858 | 0.970158 | 3.41E-131 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24858.t1 | MTR_1g073400 | 96.835 | 474 | 15 | 0 | 1 | 474 | 1 | 474 | 0.0 | 942 |
| MS.gene24858.t1 | MTR_3g106480 | 90.795 | 478 | 40 | 1 | 1 | 474 | 1 | 478 | 0.0 | 891 |
| MS.gene24858.t1 | MTR_1g115145 | 93.528 | 479 | 20 | 4 | 1 | 474 | 1 | 473 | 0.0 | 877 |
| MS.gene24858.t1 | MTR_1g071130 | 90.105 | 475 | 20 | 2 | 1 | 474 | 1 | 449 | 0.0 | 867 |
| MS.gene24858.t1 | MTR_3g106485 | 91.350 | 474 | 41 | 0 | 1 | 474 | 1 | 474 | 0.0 | 864 |
| MS.gene24858.t1 | MTR_3g106420 | 90.795 | 478 | 40 | 1 | 1 | 474 | 3 | 480 | 0.0 | 862 |
| MS.gene24858.t1 | MTR_1g083190 | 89.662 | 474 | 45 | 1 | 1 | 474 | 3 | 472 | 0.0 | 837 |
| MS.gene24858.t1 | MTR_3g106430 | 90.909 | 473 | 43 | 0 | 1 | 473 | 1 | 473 | 0.0 | 830 |
| MS.gene24858.t1 | MTR_3g106470 | 79.874 | 477 | 36 | 3 | 1 | 473 | 32 | 452 | 0.0 | 723 |
| MS.gene24858.t1 | MTR_8g063830 | 79.741 | 464 | 51 | 5 | 1 | 460 | 1 | 425 | 0.0 | 664 |
| MS.gene24858.t1 | MTR_3g065540 | 64.348 | 115 | 14 | 1 | 40 | 154 | 14 | 101 | 1.24e-40 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24858.t1 | AT5G25260 | 74.684 | 474 | 104 | 3 | 1 | 470 | 1 | 462 | 0.0 | 729 |
| MS.gene24858.t1 | AT5G25250 | 75.532 | 470 | 103 | 2 | 1 | 469 | 1 | 459 | 0.0 | 728 |
| MS.gene24858.t1 | AT5G64870 | 71.822 | 472 | 118 | 3 | 2 | 469 | 3 | 463 | 0.0 | 657 |
Find 113 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATATTTCTCATATTT+AGG | 0.103686 | 8.2:-6723478 | MS.gene24858:CDS |
| TTGAACCTAAGATTAGTATT+TGG | 0.251111 | 8.2:-6722469 | MS.gene24858:CDS |
| CTGCTAAAGCTGTGGCTCTA+AGG | 0.272737 | 8.2:-6723150 | MS.gene24858:CDS |
| TGGAATAACCGAAGGTTCTA+TGG | 0.272931 | 8.2:-6722435 | MS.gene24858:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.295084 | 8.2:-6722542 | MS.gene24858:CDS |
| ATGAATATTTCTCATATTTA+GGG | 0.305111 | 8.2:-6723477 | MS.gene24858:CDS |
| GTGAAGTTGGTTCAAAATCT+AGG | 0.314495 | 8.2:-6723390 | MS.gene24858:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.318195 | 8.2:+6722464 | None:intergenic |
| CTTCCTGCCGTCTTCACAAT+TGG | 0.320772 | 8.2:-6723769 | MS.gene24858:CDS |
| GAAACGACTACACCGCTCTA+AGG | 0.333482 | 8.2:-6722562 | MS.gene24858:CDS |
| TGTAGGTACAAGAGGCTAAC+TGG | 0.334134 | 8.2:-6722796 | MS.gene24858:intron |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.342126 | 8.2:-6722342 | MS.gene24858:CDS |
| ACAAGGAGGGGTTTAGAGTT+AGG | 0.344151 | 8.2:-6723288 | MS.gene24858:CDS |
| CAACTCGAGTTGAATCAATT+CGG | 0.347216 | 8.2:-6723550 | MS.gene24858:CDS |
| AAGATTAGTATTTGGACTAA+TGG | 0.361897 | 8.2:-6722461 | MS.gene24858:CDS |
| AAGTTTGATGTCTTCGATTC+CGG | 0.389998 | 8.2:+6723903 | None:intergenic |
| GATGTCTTCGATTCCGGCTC+CGG | 0.392612 | 8.2:+6723909 | None:intergenic |
| TCCGAGTACCTTGTGATAAC+CGG | 0.419877 | 8.2:-6723928 | MS.gene24858:CDS |
| CAACGCGAATGTTAAGCAAT+TGG | 0.420451 | 8.2:-6723515 | MS.gene24858:CDS |
| CGTATTTGAGGAGGCTTTCG+TGG | 0.435533 | 8.2:+6723731 | None:intergenic |
| AACTCGAGTTGAATCAATTC+GGG | 0.439303 | 8.2:-6723549 | MS.gene24858:CDS |
| TTTCATACCCATAGAACCTT+CGG | 0.446868 | 8.2:+6722427 | None:intergenic |
| TCAAACTTGCAAAGAAATCA+TGG | 0.455886 | 8.2:-6723888 | MS.gene24858:CDS |
| AAGCATAATCAACAATGTAC+AGG | 0.458943 | 8.2:-6723963 | None:intergenic |
| GCAGAAGGGATTGTGACAAT+TGG | 0.461115 | 8.2:-6722629 | MS.gene24858:CDS |
| AAGACTGTCCATGAGCAAAC+AGG | 0.474006 | 8.2:-6722365 | MS.gene24858:CDS |
| AGCAGTTCTGTATGAGAAGA+AGG | 0.479849 | 8.2:-6722744 | MS.gene24858:CDS |
| TTATCAATTTAGCGTATTTG+AGG | 0.483745 | 8.2:+6723719 | None:intergenic |
| GAAGAAAGCGGCATGGACTA+AGG | 0.488752 | 8.2:-6723197 | MS.gene24858:CDS |
| TCCTTTGAAAACCTCTTCCA+TGG | 0.499133 | 8.2:+6723609 | None:intergenic |
| CGAAAGTTATTGCGATGCAG+AGG | 0.499935 | 8.2:-6723324 | MS.gene24858:CDS |
| CGCGAATGTTAAGCAATTGG+TGG | 0.500388 | 8.2:-6723512 | MS.gene24858:CDS |
| TGCTAAAGCTGTGGCTCTAA+GGG | 0.501192 | 8.2:-6723149 | MS.gene24858:CDS |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.503335 | 8.2:-6722346 | MS.gene24858:CDS |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.506083 | 8.2:-6723441 | MS.gene24858:CDS |
| TGCTTCGATGACCATGGAAG+AGG | 0.508530 | 8.2:-6723620 | MS.gene24858:CDS |
| GCTAAGATGAAAGGTGAAGT+TGG | 0.511842 | 8.2:-6723403 | MS.gene24858:CDS |
| GTTATTGCGATGCAGAGGGC+TGG | 0.513050 | 8.2:-6723319 | MS.gene24858:CDS |
| TAGAGTTAGGACTGAAGTGA+AGG | 0.517399 | 8.2:-6723275 | MS.gene24858:CDS |
| TGAAGTTGGTTCAAAATCTA+GGG | 0.519749 | 8.2:-6723389 | MS.gene24858:CDS |
| GCAACATGCCTGTTTGCTCA+TGG | 0.521020 | 8.2:+6722357 | None:intergenic |
| CATGTCAAGGAACTCGTTCA+AGG | 0.522287 | 8.2:-6723673 | MS.gene24858:CDS |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.522936 | 8.2:-6722341 | MS.gene24858:CDS |
| ATGGGTATGAAAGAGGTTGC+TGG | 0.526365 | 8.2:-6722416 | MS.gene24858:CDS |
| AAGCAATTGGTGGATGTGCC+TGG | 0.526695 | 8.2:-6723502 | MS.gene24858:CDS |
| GGCTCAAGTGGCTGAAGTCG+AGG | 0.533715 | 8.2:-6723173 | MS.gene24858:CDS |
| ATTAGTATTTGGACTAATGG+AGG | 0.534214 | 8.2:-6722458 | MS.gene24858:CDS |
| TGGTGGCATGTTTCAAGAGA+TGG | 0.539247 | 8.2:-6722522 | MS.gene24858:CDS |
| GCTGGAGAGAGTGACAAGGA+GGG | 0.539332 | 8.2:-6723301 | MS.gene24858:CDS |
| ATGGACTAAGGCGGCTCAAG+TGG | 0.540306 | 8.2:-6723185 | MS.gene24858:CDS |
| GGCTGAGGCTAATGCTGAGT+TGG | 0.546673 | 8.2:-6723224 | MS.gene24858:CDS |
| TACCTTGTGATAACCGGAGC+CGG | 0.547560 | 8.2:-6723922 | MS.gene24858:CDS |
| CACCGTCTTCGACCTCTCAC+CGG | 0.548854 | 8.2:-6723845 | MS.gene24858:CDS |
| GATAAGGTTCCCATCCAAGC+AGG | 0.550974 | 8.2:+6722332 | None:intergenic |
| TCCGGTTATCACAAGGTACT+CGG | 0.555985 | 8.2:+6723927 | None:intergenic |
| AAGAGAGGCTGAAGTGGCTG+AGG | 0.558698 | 8.2:-6723239 | MS.gene24858:CDS |
| GTAGGTACAAGAGGCTAACT+GGG | 0.564807 | 8.2:-6722795 | MS.gene24858:intron |
| GGACCAATTGTGAAGACGGC+AGG | 0.565432 | 8.2:+6723766 | None:intergenic |
| AGTATTTGGACTAATGGAGG+TGG | 0.568629 | 8.2:-6722455 | MS.gene24858:CDS |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 8.2:-6722584 | MS.gene24858:CDS |
| CCTCGCTGCTTCGATGACCA+TGG | 0.570615 | 8.2:-6723626 | MS.gene24858:CDS |
| GGAATAACCGAAGGTTCTAT+GGG | 0.570732 | 8.2:-6722434 | MS.gene24858:CDS |
| CTGGATGGTGTAGGTACAAG+AGG | 0.571024 | 8.2:-6722804 | MS.gene24858:intron |
| ACTTCGAAGGTATAGTTCAC+CGG | 0.571447 | 8.2:+6723826 | None:intergenic |
| AAGACGGTGCAAGATTGACC+AGG | 0.574032 | 8.2:+6723859 | None:intergenic |
| AGGTATAGTTCACCGGTGAG+AGG | 0.574045 | 8.2:+6723833 | None:intergenic |
| AGGTTCTATGGGTATGAAAG+AGG | 0.575883 | 8.2:-6722423 | MS.gene24858:CDS |
| GGCAGAAGCACAGAAAGCAT+TGG | 0.582553 | 8.2:-6722717 | MS.gene24858:CDS |
| GTGACAATTGGACAAGCTCA+AGG | 0.582712 | 8.2:-6722617 | MS.gene24858:CDS |
| TCAATTTAGCGTATTTGAGG+AGG | 0.583375 | 8.2:+6723722 | None:intergenic |
| AAACGACTACACCGCTCTAA+GGG | 0.585523 | 8.2:-6722561 | MS.gene24858:CDS |
| GATTCGAGAGTTTATCATGA+GGG | 0.586669 | 8.2:+6723695 | None:intergenic |
| GGCTGGAGAGAGTGACAAGG+AGG | 0.587239 | 8.2:-6723302 | MS.gene24858:CDS |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 8.2:-6723245 | MS.gene24858:CDS |
| TTTAGGGCAAAAGACGCAGA+TGG | 0.590887 | 8.2:-6723461 | MS.gene24858:CDS |
| ACGAGGACCAATTGTGAAGA+CGG | 0.593813 | 8.2:+6723762 | None:intergenic |
| ATTCGAGAGTTTATCATGAG+GGG | 0.597738 | 8.2:+6723696 | None:intergenic |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 8.2:-6722738 | MS.gene24858:CDS |
| ACTCATGGCTTGAACTTCGA+AGG | 0.601319 | 8.2:+6723813 | None:intergenic |
| CTCGTTCAAGGAATCATCGA+AGG | 0.607063 | 8.2:-6723661 | MS.gene24858:CDS |
| TTCCGGCTCCGGTTATCACA+AGG | 0.609955 | 8.2:+6723920 | None:intergenic |
| AGTTGCAAGGTGAGGTTGAG+AGG | 0.610701 | 8.2:-6723120 | MS.gene24858:CDS |
| GTTGGTTCAAAATCTAGGGA+AGG | 0.612463 | 8.2:-6723385 | MS.gene24858:CDS |
| CTAAGGGAAGCTGAGTTGCA+AGG | 0.613783 | 8.2:-6723133 | MS.gene24858:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 8.2:-6723412 | MS.gene24858:CDS |
| CTGGAGAGAGTGACAAGGAG+GGG | 0.616817 | 8.2:-6723300 | MS.gene24858:CDS |
| CACCGGTGAGAGGTCGAAGA+CGG | 0.628279 | 8.2:+6723843 | None:intergenic |
| GAAAGTTATTGCGATGCAGA+GGG | 0.631337 | 8.2:-6723323 | MS.gene24858:CDS |
| AGCATAATCAACAATGTACA+GGG | 0.635277 | 8.2:-6723962 | None:intergenic |
| TATGAGAAATATTCATGACC+AGG | 0.636387 | 8.2:+6723484 | None:intergenic |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.637623 | 8.2:-6723440 | MS.gene24858:CDS |
| AAGACGGCAGGAAGAACGAA+AGG | 0.640541 | 8.2:+6723778 | None:intergenic |
| GATGGCTAAGATTAATGCTG+AGG | 0.642407 | 8.2:-6722504 | MS.gene24858:CDS |
| GAGGGCTGGAGAGAGTGACA+AGG | 0.646522 | 8.2:-6723305 | MS.gene24858:CDS |
| GGAAGCTGAGTTGCAAGGTG+AGG | 0.648282 | 8.2:-6723128 | MS.gene24858:CDS |
| TGGACAGTCTTAAAGAGAGG+TGG | 0.649808 | 8.2:+6722377 | None:intergenic |
| TAGTGTTCAATATGAAACCA+AGG | 0.651992 | 8.2:-6723044 | MS.gene24858:intron |
| TAAACTCTCGAATCATGTCA+AGG | 0.655320 | 8.2:-6723686 | MS.gene24858:CDS |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 8.2:-6722539 | MS.gene24858:CDS |
| TGGCGAAGAAGAAAGCGGCA+TGG | 0.658653 | 8.2:-6723204 | MS.gene24858:CDS |
| CTTTCGTGGTCGTCAACACG+AGG | 0.660217 | 8.2:+6723745 | None:intergenic |
| AATGGAGGTGGAATAACCGA+AGG | 0.661598 | 8.2:-6722443 | MS.gene24858:CDS |
| AGTCGAGGCTGCTAAAGCTG+TGG | 0.666475 | 8.2:-6723158 | MS.gene24858:CDS |
| AAGGTTCCCATCCAAGCAGG+AGG | 0.669932 | 8.2:+6722335 | None:intergenic |
| TCATGGACAGTCTTAAAGAG+AGG | 0.674719 | 8.2:+6722374 | None:intergenic |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 8.2:-6723431 | MS.gene24858:CDS |
| ATTAATGCTGAGGCAGTACG+CGG | 0.685872 | 8.2:-6722494 | MS.gene24858:CDS |
| TGATTCGAGAGTTTATCATG+AGG | 0.688959 | 8.2:+6723694 | None:intergenic |
| GAAAGCGGCATGGACTAAGG+CGG | 0.690215 | 8.2:-6723194 | MS.gene24858:CDS |
| TGAGTTGGCGAAGAAGAAAG+CGG | 0.696012 | 8.2:-6723209 | MS.gene24858:CDS |
| AGACGGTGCAAGATTGACCA+GGG | 0.716272 | 8.2:+6723860 | None:intergenic |
| CATCAAGTAATCCCTTAGAG+CGG | 0.718284 | 8.2:+6722550 | None:intergenic |
| CCATGGTCATCGAAGCAGCG+AGG | 0.728643 | 8.2:+6723626 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTTTATTTTTTTAAGTAT+TGG | - | chr8.2:6723430-6723449 | MS.gene24858:CDS | 10.0% |
| !! | ATGAATATTTCTCATATTTA+GGG | - | chr8.2:6722788-6722807 | MS.gene24858:CDS | 15.0% |
| !!! | ATTAATACTTCAATATCTTT+TGG | - | chr8.2:6723317-6723336 | MS.gene24858:CDS | 15.0% |
| !! | CATGAATATTTCTCATATTT+AGG | - | chr8.2:6722787-6722806 | MS.gene24858:CDS | 20.0% |
| ! | AAAAGTAAAACAGAACAAGT+AGG | - | chr8.2:6723386-6723405 | MS.gene24858:CDS | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | - | chr8.2:6723804-6723823 | MS.gene24858:CDS | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | + | chr8.2:6723804-6723823 | None:intergenic | 25.0% |
| ! | TTATCAATTTAGCGTATTTG+AGG | + | chr8.2:6722549-6722568 | None:intergenic | 25.0% |
| ! | TTGAACCTAAGATTAGTATT+TGG | - | chr8.2:6723796-6723815 | MS.gene24858:CDS | 25.0% |
| !!! | TTAAGTATTGGTTGAAATTC+TGG | - | chr8.2:6723442-6723461 | MS.gene24858:CDS | 25.0% |
| ATTAGTATTTGGACTAATGG+AGG | - | chr8.2:6723807-6723826 | MS.gene24858:CDS | 30.0% | |
| TAGGTTGTATACTAGATGAA+TGG | - | chr8.2:6723405-6723424 | MS.gene24858:CDS | 30.0% | |
| TAGTGTTCAATATGAAACCA+AGG | - | chr8.2:6723221-6723240 | MS.gene24858:CDS | 30.0% | |
| TATGAGAAATATTCATGACC+AGG | + | chr8.2:6722784-6722803 | None:intergenic | 30.0% | |
| TCAAACTTGCAAAGAAATCA+TGG | - | chr8.2:6722377-6722396 | MS.gene24858:CDS | 30.0% | |
| TGAAAGGAGTTATATTTGCA+TGG | + | chr8.2:6723252-6723271 | None:intergenic | 30.0% | |
| ! | AGGGATTACTTGATGATAAA+TGG | - | chr8.2:6723723-6723742 | MS.gene24858:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr8.2:6723726-6723745 | MS.gene24858:CDS | 30.0% |
| ! | TGAAGTTGGTTCAAAATCTA+GGG | - | chr8.2:6722876-6722895 | MS.gene24858:intron | 30.0% |
| AAGTTTGATGTCTTCGATTC+CGG | + | chr8.2:6722365-6722384 | None:intergenic | 35.0% | |
| ATTCGAGAGTTTATCATGAG+GGG | + | chr8.2:6722572-6722591 | None:intergenic | 35.0% | |
| CAAAGAAAAAAGAGGCAGAA+GGG | - | chr8.2:6723622-6723641 | MS.gene24858:CDS | 35.0% | |
| GATTCGAGAGTTTATCATGA+GGG | + | chr8.2:6722573-6722592 | None:intergenic | 35.0% | |
| GCTATACGCAAAGAAAAAAG+AGG | - | chr8.2:6723614-6723633 | MS.gene24858:CDS | 35.0% | |
| TAAACTCTCGAATCATGTCA+AGG | - | chr8.2:6722579-6722598 | MS.gene24858:CDS | 35.0% | |
| TCAATTTAGCGTATTTGAGG+AGG | + | chr8.2:6722546-6722565 | None:intergenic | 35.0% | |
| TGATTCGAGAGTTTATCATG+AGG | + | chr8.2:6722574-6722593 | None:intergenic | 35.0% | |
| TTTCATACCCATAGAACCTT+CGG | + | chr8.2:6723841-6723860 | None:intergenic | 35.0% | |
| ! | AAGAAATCATGGATTTTCCC+TGG | - | chr8.2:6722388-6722407 | MS.gene24858:CDS | 35.0% |
| ! | AAGAACGAAAGGCAGTTTTT+CGG | + | chr8.2:6722479-6722498 | None:intergenic | 35.0% |
| ! | ATATTTGCATGGACTAACCT+TGG | + | chr8.2:6723241-6723260 | None:intergenic | 35.0% |
| ! | GTGAAGTTGGTTCAAAATCT+AGG | - | chr8.2:6722875-6722894 | MS.gene24858:intron | 35.0% |
| ! | TTAAGAGCTTTTGTCGGATA+AGG | + | chr8.2:6723952-6723971 | None:intergenic | 35.0% |
| !! | AACTCGAGTTGAATCAATTC+GGG | - | chr8.2:6722716-6722735 | MS.gene24858:CDS | 35.0% |
| !! | CAACTCGAGTTGAATCAATT+CGG | - | chr8.2:6722715-6722734 | MS.gene24858:CDS | 35.0% |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | - | chr8.2:6723011-6723030 | MS.gene24858:intron | 35.0% |
| !! | GTATTGGTTGAAATTCTGGA+TGG | - | chr8.2:6723446-6723465 | MS.gene24858:CDS | 35.0% |
| AGCAGTTCTGTATGAGAAGA+AGG | - | chr8.2:6723521-6723540 | MS.gene24858:CDS | 40.0% | |
| AGGTTCTATGGGTATGAAAG+AGG | - | chr8.2:6723842-6723861 | MS.gene24858:CDS | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | - | chr8.2:6723681-6723700 | MS.gene24858:CDS | 40.0% | |
| AGTATTTGGACTAATGGAGG+TGG | - | chr8.2:6723810-6723829 | MS.gene24858:CDS | 40.0% | |
| CAACGCGAATGTTAAGCAAT+TGG | - | chr8.2:6722750-6722769 | MS.gene24858:CDS | 40.0% | |
| CATCAAGTAATCCCTTAGAG+CGG | + | chr8.2:6723718-6723737 | None:intergenic | 40.0% | |
| GAAAGTTATTGCGATGCAGA+GGG | - | chr8.2:6722942-6722961 | MS.gene24858:intron | 40.0% | |
| GATGGCTAAGATTAATGCTG+AGG | - | chr8.2:6723761-6723780 | MS.gene24858:CDS | 40.0% | |
| GCAAAGAAAAAAGAGGCAGA+AGG | - | chr8.2:6723621-6723640 | MS.gene24858:CDS | 40.0% | |
| GCTAAGATGAAAGGTGAAGT+TGG | - | chr8.2:6722862-6722881 | MS.gene24858:intron | 40.0% | |
| GGAATAACCGAAGGTTCTAT+GGG | - | chr8.2:6723831-6723850 | MS.gene24858:CDS | 40.0% | |
| GTTGAAATTCTGGATGGTGT+AGG | - | chr8.2:6723452-6723471 | MS.gene24858:CDS | 40.0% | |
| TAGAGTTAGGACTGAAGTGA+AGG | - | chr8.2:6722990-6723009 | MS.gene24858:intron | 40.0% | |
| TCATGGACAGTCTTAAAGAG+AGG | + | chr8.2:6723894-6723913 | None:intergenic | 40.0% | |
| TGGAATAACCGAAGGTTCTA+TGG | - | chr8.2:6723830-6723849 | MS.gene24858:CDS | 40.0% | |
| ! | ACCATGGAAGAGGTTTTCAA+AGG | - | chr8.2:6722655-6722674 | MS.gene24858:CDS | 40.0% |
| ! | ACTTCGAAGGTATAGTTCAC+CGG | + | chr8.2:6722442-6722461 | None:intergenic | 40.0% |
| ! | GTTGGTTCAAAATCTAGGGA+AGG | - | chr8.2:6722880-6722899 | MS.gene24858:intron | 40.0% |
| ! | TCCTTTGAAAACCTCTTCCA+TGG | + | chr8.2:6722659-6722678 | None:intergenic | 40.0% |
| AAACGACTACACCGCTCTAA+GGG | - | chr8.2:6723704-6723723 | MS.gene24858:CDS | 45.0% | |
| AAGACTGTCCATGAGCAAAC+AGG | - | chr8.2:6723900-6723919 | MS.gene24858:CDS | 45.0% | |
| AATGGAGGTGGAATAACCGA+AGG | - | chr8.2:6723822-6723841 | MS.gene24858:CDS | 45.0% | |
| ACGAGGACCAATTGTGAAGA+CGG | + | chr8.2:6722506-6722525 | None:intergenic | 45.0% | |
| ACTCATGGCTTGAACTTCGA+AGG | + | chr8.2:6722455-6722474 | None:intergenic | 45.0% | |
| ATGGGTATGAAAGAGGTTGC+TGG | - | chr8.2:6723849-6723868 | MS.gene24858:CDS | 45.0% | |
| ATTAATGCTGAGGCAGTACG+CGG | - | chr8.2:6723771-6723790 | MS.gene24858:CDS | 45.0% | |
| CATGTCAAGGAACTCGTTCA+AGG | - | chr8.2:6722592-6722611 | MS.gene24858:CDS | 45.0% | |
| CGAAAGTTATTGCGATGCAG+AGG | - | chr8.2:6722941-6722960 | MS.gene24858:intron | 45.0% | |
| CGCGAATGTTAAGCAATTGG+TGG | - | chr8.2:6722753-6722772 | MS.gene24858:CDS | 45.0% | |
| CTCGTTCAAGGAATCATCGA+AGG | - | chr8.2:6722604-6722623 | MS.gene24858:CDS | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | - | chr8.2:6723020-6723039 | MS.gene24858:intron | 45.0% | |
| GCAGAAGGGATTGTGACAAT+TGG | - | chr8.2:6723636-6723655 | MS.gene24858:CDS | 45.0% | |
| GTAGGTACAAGAGGCTAACT+GGG | - | chr8.2:6723470-6723489 | MS.gene24858:CDS | 45.0% | |
| GTGACAATTGGACAAGCTCA+AGG | - | chr8.2:6723648-6723667 | MS.gene24858:CDS | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | - | chr8.2:6722853-6722872 | MS.gene24858:intron | 45.0% | |
| TCCGAGTACCTTGTGATAAC+CGG | - | chr8.2:6722337-6722356 | MS.gene24858:CDS | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr8.2:6723527-6723546 | MS.gene24858:CDS | 45.0% | |
| TGGACAGTCTTAAAGAGAGG+TGG | + | chr8.2:6723891-6723910 | None:intergenic | 45.0% | |
| TGGTGGCATGTTTCAAGAGA+TGG | - | chr8.2:6723743-6723762 | MS.gene24858:CDS | 45.0% | |
| TGTAGGTACAAGAGGCTAAC+TGG | - | chr8.2:6723469-6723488 | MS.gene24858:CDS | 45.0% | |
| ! | ACAAGGAGGGGTTTAGAGTT+AGG | - | chr8.2:6722977-6722996 | MS.gene24858:intron | 45.0% |
| ! | TCCGGTTATCACAAGGTACT+CGG | + | chr8.2:6722341-6722360 | None:intergenic | 45.0% |
| ! | TGAGTTGGCGAAGAAGAAAG+CGG | - | chr8.2:6723056-6723075 | MS.gene24858:CDS | 45.0% |
| ! | TTTAGGGCAAAAGACGCAGA+TGG | - | chr8.2:6722804-6722823 | MS.gene24858:intron | 45.0% |
| !! | TGCTAAAGCTGTGGCTCTAA+GGG | - | chr8.2:6723116-6723135 | MS.gene24858:CDS | 45.0% |
| !! | AATAATAATTAATAAATGAA+AGG | + | chr8.2:6723268-6723287 | None:intergenic | 5.0% |
| AAGACGGCAGGAAGAACGAA+AGG | + | chr8.2:6722490-6722509 | None:intergenic | 50.0% | |
| AAGACGGTGCAAGATTGACC+AGG | + | chr8.2:6722409-6722428 | None:intergenic | 50.0% | |
| AGACGGTGCAAGATTGACCA+GGG | + | chr8.2:6722408-6722427 | None:intergenic | 50.0% | |
| AGGTATAGTTCACCGGTGAG+AGG | + | chr8.2:6722435-6722454 | None:intergenic | 50.0% | |
| AGTTGCAAGGTGAGGTTGAG+AGG | - | chr8.2:6723145-6723164 | MS.gene24858:CDS | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | - | chr8.2:6723924-6723943 | MS.gene24858:CDS | 50.0% | |
| CGTATTTGAGGAGGCTTTCG+TGG | + | chr8.2:6722537-6722556 | None:intergenic | 50.0% | |
| CTAAGGGAAGCTGAGTTGCA+AGG | - | chr8.2:6723132-6723151 | MS.gene24858:CDS | 50.0% | |
| CTGGATGGTGTAGGTACAAG+AGG | - | chr8.2:6723461-6723480 | MS.gene24858:CDS | 50.0% | |
| CTTCCTGCCGTCTTCACAAT+TGG | - | chr8.2:6722496-6722515 | MS.gene24858:CDS | 50.0% | |
| GAAACGACTACACCGCTCTA+AGG | - | chr8.2:6723703-6723722 | MS.gene24858:CDS | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | - | chr8.2:6722834-6722853 | MS.gene24858:intron | 50.0% | |
| GATAAGGTTCCCATCCAAGC+AGG | + | chr8.2:6723936-6723955 | None:intergenic | 50.0% | |
| GCAACATGCCTGTTTGCTCA+TGG | + | chr8.2:6723911-6723930 | None:intergenic | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | - | chr8.2:6722825-6722844 | MS.gene24858:intron | 50.0% | |
| TACCTTGTGATAACCGGAGC+CGG | - | chr8.2:6722343-6722362 | MS.gene24858:CDS | 50.0% | |
| TGCTTCGATGACCATGGAAG+AGG | - | chr8.2:6722645-6722664 | MS.gene24858:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCT+AGG | - | chr8.2:6722824-6722843 | MS.gene24858:intron | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCC+TGG | - | chr8.2:6722763-6722782 | MS.gene24858:CDS | 50.0% |
| ! | CTGCTAAAGCTGTGGCTCTA+AGG | - | chr8.2:6723115-6723134 | MS.gene24858:CDS | 50.0% |
| ! | GAAGAAAGCGGCATGGACTA+AGG | - | chr8.2:6723068-6723087 | MS.gene24858:CDS | 50.0% |
| ! | GGCAGAAGCACAGAAAGCAT+TGG | - | chr8.2:6723548-6723567 | MS.gene24858:CDS | 50.0% |
| !! | AGGCAGTTTTTCGGCACTCA+TGG | + | chr8.2:6722470-6722489 | None:intergenic | 50.0% |
| AAGAGAGGCTGAAGTGGCTG+AGG | - | chr8.2:6723026-6723045 | MS.gene24858:intron | 55.0% | |
| AAGGTTCCCATCCAAGCAGG+AGG | + | chr8.2:6723933-6723952 | None:intergenic | 55.0% | |
| AGTCGAGGCTGCTAAAGCTG+TGG | - | chr8.2:6723107-6723126 | MS.gene24858:CDS | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | - | chr8.2:6723923-6723942 | MS.gene24858:CDS | 55.0% | |
| CTGGAGAGAGTGACAAGGAG+GGG | - | chr8.2:6722965-6722984 | MS.gene24858:intron | 55.0% | |
| CTTTCGTGGTCGTCAACACG+AGG | + | chr8.2:6722523-6722542 | None:intergenic | 55.0% | |
| GATGTCTTCGATTCCGGCTC+CGG | + | chr8.2:6722359-6722378 | None:intergenic | 55.0% | |
| GCTGGAGAGAGTGACAAGGA+GGG | - | chr8.2:6722964-6722983 | MS.gene24858:intron | 55.0% | |
| GGAAGCTGAGTTGCAAGGTG+AGG | - | chr8.2:6723137-6723156 | MS.gene24858:CDS | 55.0% | |
| GGACCAATTGTGAAGACGGC+AGG | + | chr8.2:6722502-6722521 | None:intergenic | 55.0% | |
| GGCTGAGGCTAATGCTGAGT+TGG | - | chr8.2:6723041-6723060 | MS.gene24858:intron | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | - | chr8.2:6722946-6722965 | MS.gene24858:intron | 55.0% | |
| TGGCGAAGAAGAAAGCGGCA+TGG | - | chr8.2:6723061-6723080 | MS.gene24858:CDS | 55.0% | |
| TTCCGGCTCCGGTTATCACA+AGG | + | chr8.2:6722348-6722367 | None:intergenic | 55.0% | |
| ! | ATGGACTAAGGCGGCTCAAG+TGG | - | chr8.2:6723080-6723099 | MS.gene24858:CDS | 55.0% |
| ! | GAAAGCGGCATGGACTAAGG+CGG | - | chr8.2:6723071-6723090 | MS.gene24858:CDS | 55.0% |
| CACCGGTGAGAGGTCGAAGA+CGG | + | chr8.2:6722425-6722444 | None:intergenic | 60.0% | |
| CACCGTCTTCGACCTCTCAC+CGG | - | chr8.2:6722420-6722439 | MS.gene24858:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | - | chr8.2:6723919-6723938 | MS.gene24858:CDS | 60.0% | |
| CCATGGTCATCGAAGCAGCG+AGG | + | chr8.2:6722642-6722661 | None:intergenic | 60.0% | |
| CCTCGCTGCTTCGATGACCA+TGG | - | chr8.2:6722639-6722658 | MS.gene24858:CDS | 60.0% | |
| GAGGGCTGGAGAGAGTGACA+AGG | - | chr8.2:6722960-6722979 | MS.gene24858:intron | 60.0% | |
| GGCTCAAGTGGCTGAAGTCG+AGG | - | chr8.2:6723092-6723111 | MS.gene24858:CDS | 60.0% | |
| GGCTGGAGAGAGTGACAAGG+AGG | - | chr8.2:6722963-6722982 | MS.gene24858:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 6722316 | 6723971 | 6722316 | ID=MS.gene24858 |
| chr8.2 | mRNA | 6722316 | 6723971 | 6722316 | ID=MS.gene24858.t1;Parent=MS.gene24858 |
| chr8.2 | exon | 6723045 | 6723971 | 6723045 | ID=MS.gene24858.t1.exon1;Parent=MS.gene24858.t1 |
| chr8.2 | CDS | 6723045 | 6723971 | 6723045 | ID=cds.MS.gene24858.t1;Parent=MS.gene24858.t1 |
| chr8.2 | exon | 6722316 | 6722813 | 6722316 | ID=MS.gene24858.t1.exon2;Parent=MS.gene24858.t1 |
| chr8.2 | CDS | 6722316 | 6722813 | 6722316 | ID=cds.MS.gene24858.t1;Parent=MS.gene24858.t1 |
| Gene Sequence |
| Protein sequence |
