Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014873.t1 | XP_003603333.2 | 98.3 | 479 | 4 | 2 | 1 | 479 | 1 | 475 | 2.60E-204 | 721.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014873.t1 | D2XNR1 | 98.3 | 479 | 4 | 2 | 1 | 479 | 1 | 475 | 6.3e-207 | 721.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014873.t1 | G7JAE5 | 98.3 | 479 | 4 | 2 | 1 | 479 | 1 | 475 | 1.9e-204 | 721.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014873.t1 | MTR_3g106430 | 98.539 | 479 | 3 | 2 | 1 | 479 | 1 | 475 | 0.0 | 944 |
| MS.gene014873.t1 | MTR_3g106480 | 92.887 | 478 | 34 | 0 | 1 | 478 | 1 | 478 | 0.0 | 906 |
| MS.gene014873.t1 | MTR_3g106420 | 92.050 | 478 | 38 | 0 | 1 | 478 | 3 | 480 | 0.0 | 870 |
| MS.gene014873.t1 | MTR_3g106485 | 91.632 | 478 | 36 | 2 | 1 | 478 | 1 | 474 | 0.0 | 857 |
| MS.gene014873.t1 | MTR_1g083190 | 91.841 | 478 | 31 | 1 | 1 | 478 | 3 | 472 | 0.0 | 852 |
| MS.gene014873.t1 | MTR_1g073400 | 91.841 | 478 | 35 | 1 | 1 | 478 | 1 | 474 | 0.0 | 845 |
| MS.gene014873.t1 | MTR_1g115145 | 89.144 | 479 | 45 | 3 | 1 | 478 | 1 | 473 | 0.0 | 842 |
| MS.gene014873.t1 | MTR_1g071130 | 86.402 | 478 | 36 | 2 | 1 | 478 | 1 | 449 | 0.0 | 835 |
| MS.gene014873.t1 | MTR_3g106470 | 82.180 | 477 | 29 | 2 | 1 | 477 | 32 | 452 | 0.0 | 742 |
| MS.gene014873.t1 | MTR_8g063830 | 81.075 | 465 | 47 | 5 | 1 | 464 | 1 | 425 | 0.0 | 669 |
| MS.gene014873.t1 | MTR_3g065540 | 66.087 | 115 | 12 | 1 | 40 | 154 | 14 | 101 | 2.38e-41 | 143 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014873.t1 | AT5G25260 | 74.419 | 473 | 109 | 2 | 1 | 473 | 1 | 461 | 0.0 | 721 |
| MS.gene014873.t1 | AT5G25250 | 74.841 | 473 | 105 | 2 | 1 | 473 | 1 | 459 | 0.0 | 719 |
| MS.gene014873.t1 | AT5G64870 | 70.763 | 472 | 127 | 1 | 2 | 473 | 3 | 463 | 0.0 | 647 |
Find 120 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAATATTTCTCATATT+TGG | 0.034420 | 3.3:-87392133 | MS.gene014873:CDS |
| GTGAGATTGGTTCGAAATTA+AGG | 0.141080 | 3.3:-87392044 | MS.gene014873:CDS |
| CTGCTTCCATTTGTGTCTTT+TGG | 0.142752 | 3.3:+87392109 | None:intergenic |
| GAGTTTAAACAAGAAGTATT+TGG | 0.198991 | 3.3:-87392234 | MS.gene014873:CDS |
| ACTTCAAAGGTGTAATTTAC+AGG | 0.279006 | 3.3:+87392480 | None:intergenic |
| CATGAATATTTCTCATATTT+GGG | 0.285753 | 3.3:-87392132 | MS.gene014873:CDS |
| AGGGATTACTTAATGATAAA+TGG | 0.291040 | 3.3:-87390619 | MS.gene014873:CDS |
| CTGCTAAAGCCGTAGCTCTA+AGG | 0.291473 | 3.3:-87391804 | MS.gene014873:CDS |
| AACAAGTTCCTTAACATGAT+TGG | 0.309318 | 3.3:+87392332 | None:intergenic |
| AGTTTAAACAAGAAGTATTT+GGG | 0.333241 | 3.3:-87392233 | MS.gene014873:CDS |
| TCACAATACCTTGTGATAAC+TGG | 0.348490 | 3.3:-87392582 | MS.gene014873:CDS |
| AGAGCTATATGCAAAGAAAA+AGG | 0.353826 | 3.3:-87390731 | MS.gene014873:CDS |
| ATCATGAGGGGAAATTAGTT+TGG | 0.369987 | 3.3:+87392362 | None:intergenic |
| TGTAAATCAATAAACCGAAT+TGG | 0.376492 | 3.3:+87392190 | None:intergenic |
| GTAACATTCCCGTTTGTTCA+TGG | 0.378374 | 3.3:+87390422 | None:intergenic |
| AAGATTAGCATTTGGACTAA+TGG | 0.384982 | 3.3:-87390538 | MS.gene014873:CDS |
| TATAGGTACAAGAAGCAAAC+TGG | 0.387176 | 3.3:-87390873 | MS.gene014873:intron |
| TGAGATTGGTTCGAAATTAA+GGG | 0.391205 | 3.3:-87392043 | MS.gene014873:CDS |
| TTAGTCCAAATGCTAATCTT+AGG | 0.400981 | 3.3:+87390541 | None:intergenic |
| CAACTTGAACTAAACCAATT+CGG | 0.410262 | 3.3:-87392204 | MS.gene014873:CDS |
| GGCTGAGGCTAATTCTGAAT+TGG | 0.413100 | 3.3:-87391878 | MS.gene014873:CDS |
| TTGAGCCTAAGATTAGCATT+TGG | 0.413132 | 3.3:-87390546 | MS.gene014873:CDS |
| CGGTCCTCGTGTGGATGATA+AGG | 0.423356 | 3.3:-87392403 | MS.gene014873:CDS |
| ACTAATGGTGGTGATAATAG+TGG | 0.431222 | 3.3:-87390523 | MS.gene014873:CDS |
| GAAGAAAGCGGCTTGGACTA+AGG | 0.439534 | 3.3:-87391851 | MS.gene014873:CDS |
| TACCTTGTGATAACTGGAAT+CGG | 0.450729 | 3.3:-87392576 | MS.gene014873:CDS |
| TAAACTCTCCAATCATGTTA+AGG | 0.453562 | 3.3:-87392340 | MS.gene014873:CDS |
| AATGTTACCACCTGCTTGGA+TGG | 0.462701 | 3.3:-87390407 | MS.gene014873:CDS |
| AAGACAGCGGGGAGAACAAA+AGG | 0.470694 | 3.3:+87392432 | None:intergenic |
| CATGTTAAGGAACTTGTTCA+AGG | 0.472007 | 3.3:-87392327 | MS.gene014873:CDS |
| GCTAAGATGAAAGGTGAGAT+TGG | 0.475874 | 3.3:-87392057 | MS.gene014873:CDS |
| CTCCCCGCTGTCTTCACTAT+CGG | 0.478414 | 3.3:-87392423 | MS.gene014873:CDS |
| TAAGACTGTCCATGAACAAA+CGG | 0.483381 | 3.3:-87390431 | MS.gene014873:CDS |
| GGGAATAACTGAAGGTGCCA+TGG | 0.487818 | 3.3:-87390500 | MS.gene014873:CDS |
| GAAACAACTACACAGCTGTA+AGG | 0.490449 | 3.3:-87390639 | MS.gene014873:CDS |
| CTCAAGTCCGCGTACCGCCT+CGG | 0.491620 | 3.3:+87390564 | None:intergenic |
| TTTGGGCCAAAAGACACAAA+TGG | 0.502028 | 3.3:-87392115 | MS.gene014873:CDS |
| CGGGAATGTTACCACCTGCT+TGG | 0.507160 | 3.3:-87390411 | MS.gene014873:CDS |
| TGCTTCAATGACAATGGAAG+AGG | 0.507417 | 3.3:-87392274 | MS.gene014873:CDS |
| CTCAAAATCAACCATGTACA+AGG | 0.508124 | 3.3:-87392616 | None:intergenic |
| CTAAGGGATGCTGAGTTACA+AGG | 0.508698 | 3.3:-87391787 | MS.gene014873:CDS |
| GAGAGAAGCTGAAGTGGCTG+AGG | 0.509792 | 3.3:-87391893 | MS.gene014873:CDS |
| CTTGTTCAAGGAATCATTGA+AGG | 0.510892 | 3.3:-87392315 | MS.gene014873:CDS |
| TTGGACTAAGGCGGCTCAAG+TGG | 0.511474 | 3.3:-87391839 | MS.gene014873:CDS |
| GAATCAGAGAGAAGCTGAAG+TGG | 0.511635 | 3.3:-87391899 | MS.gene014873:CDS |
| GTTATTGCGATGCAGAGGGC+TGG | 0.513050 | 3.3:-87391973 | MS.gene014873:CDS |
| GGACCGATAGTGAAGACAGC+GGG | 0.513792 | 3.3:+87392420 | None:intergenic |
| AAGACTGTCCATGAACAAAC+GGG | 0.515531 | 3.3:-87390430 | MS.gene014873:CDS |
| GGCTCAAGTGGCCGAAGTTG+AGG | 0.521394 | 3.3:-87391827 | MS.gene014873:CDS |
| GCTGGAGAGGGCGACAAGGA+GGG | 0.521545 | 3.3:-87391955 | MS.gene014873:CDS |
| GAAGACGGAGTAGGATTGAC+CGG | 0.524836 | 3.3:+87392512 | None:intergenic |
| GAGGGCTGGAGAGGGCGACA+AGG | 0.525696 | 3.3:-87391959 | MS.gene014873:CDS |
| GTAACACTTGGGAATGCTCA+AGG | 0.527999 | 3.3:-87390694 | MS.gene014873:CDS |
| TGCTAAAGCCGTAGCTCTAA+GGG | 0.534229 | 3.3:-87391803 | MS.gene014873:CDS |
| GGAATAACTGAAGGTGCCAT+GGG | 0.534697 | 3.3:-87390499 | MS.gene014873:CDS |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 3.3:+87390483 | None:intergenic |
| GGCAAGACTCCCATCCAAGC+AGG | 0.534806 | 3.3:+87390397 | None:intergenic |
| GCAGAGGGAATTGTAACACT+TGG | 0.536418 | 3.3:-87390706 | MS.gene014873:CDS |
| GGCTGGAGAGGGCGACAAGG+AGG | 0.536888 | 3.3:-87391956 | MS.gene014873:CDS |
| GCTCATTGCTTGAACTTCAA+AGG | 0.540493 | 3.3:+87392467 | None:intergenic |
| GCGATGCAGAGGGCTGGAGA+GGG | 0.540981 | 3.3:-87391967 | MS.gene014873:CDS |
| CTCAGCATCCCTTAGAGCTA+CGG | 0.547484 | 3.3:+87391795 | None:intergenic |
| TGCGATGCAGAGGGCTGGAG+AGG | 0.550159 | 3.3:-87391968 | MS.gene014873:CDS |
| ATTGAACGCTAGCTTTGCTA+AGG | 0.553614 | 3.3:+87391710 | None:intergenic |
| TAAAGCTTGCAAAGAAAGCA+TGG | 0.553863 | 3.3:-87392542 | MS.gene014873:CDS |
| TTAGTTTGGCGTATTTGAGA+AGG | 0.553890 | 3.3:+87392376 | None:intergenic |
| TAAAGTGAGGACTGAAGTGA+AGG | 0.556664 | 3.3:-87391929 | MS.gene014873:CDS |
| TGGCTAAGAAGAAAGCGGCT+TGG | 0.558254 | 3.3:-87391858 | MS.gene014873:CDS |
| AAACAGTTAGTTGATGTGCC+AGG | 0.562976 | 3.3:-87392156 | MS.gene014873:CDS |
| TTTGTATGAGAAGAAGGCAG+AGG | 0.567950 | 3.3:-87390815 | MS.gene014873:CDS |
| ATGTTACCACCTGCTTGGAT+GGG | 0.569893 | 3.3:-87390406 | MS.gene014873:CDS |
| GGAGCTGTACAAGAAACAAA+AGG | 0.571542 | 3.3:-87390851 | MS.gene014873:CDS |
| TCATGGACAGTCTTAAACAA+AGG | 0.574375 | 3.3:+87390439 | None:intergenic |
| TGGAAGCAGCGAATCAAGCA+AGG | 0.574713 | 3.3:-87392095 | MS.gene014873:CDS |
| CTTCACTATCGGTCCTCGTG+TGG | 0.576587 | 3.3:-87392412 | MS.gene014873:CDS |
| TGAGAGGTCGAAGACGGAGT+AGG | 0.579128 | 3.3:+87392503 | None:intergenic |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 3.3:-87390481 | MS.gene014873:CDS |
| TAACACTTGGGAATGCTCAA+GGG | 0.580610 | 3.3:-87390693 | MS.gene014873:CDS |
| CCTCGCTGCTTCAATGACAA+TGG | 0.585018 | 3.3:-87392280 | MS.gene014873:CDS |
| AAACAACTACACAGCTGTAA+GGG | 0.585417 | 3.3:-87390638 | MS.gene014873:CDS |
| CTAATGGTGGTGATAATAGT+GGG | 0.587233 | 3.3:-87390522 | MS.gene014873:CDS |
| GGCTTTAGCAGCCTCAACTT+CGG | 0.588855 | 3.3:+87391816 | None:intergenic |
| ATTAGCATTTGGACTAATGG+TGG | 0.590526 | 3.3:-87390535 | MS.gene014873:CDS |
| GATTGGAGAGTTTATCATGA+GGG | 0.592992 | 3.3:+87392349 | None:intergenic |
| AGTGCACTTCTGAATGCACT+TGG | 0.593608 | 3.3:-87390661 | MS.gene014873:CDS |
| CAAAGGTTATTGCGATGCAG+AGG | 0.594400 | 3.3:-87391978 | MS.gene014873:CDS |
| TTCCGATTCCAGTTATCACA+AGG | 0.603437 | 3.3:+87392574 | None:intergenic |
| GTATCAGAAGCTAAGATGAA+AGG | 0.607033 | 3.3:-87392066 | MS.gene014873:CDS |
| AGTTACAAGGTGAAGTTGAG+AGG | 0.609202 | 3.3:-87391774 | MS.gene014873:CDS |
| ATTGGAGAGTTTATCATGAG+GGG | 0.615848 | 3.3:+87392350 | None:intergenic |
| TGAATTGGCTAAGAAGAAAG+CGG | 0.615999 | 3.3:-87391863 | MS.gene014873:CDS |
| CAGAGGGAATTGTAACACTT+GGG | 0.616845 | 3.3:-87390705 | MS.gene014873:CDS |
| ATAGGTACAAGAAGCAAACT+GGG | 0.617338 | 3.3:-87390872 | MS.gene014873:intron |
| TACAGGTGAGAGGTCGAAGA+CGG | 0.620713 | 3.3:+87392497 | None:intergenic |
| AAAGGTTATTGCGATGCAGA+GGG | 0.625617 | 3.3:-87391977 | MS.gene014873:CDS |
| GTACAAGAAACAAAAGGAGG+CGG | 0.626062 | 3.3:-87390845 | MS.gene014873:CDS |
| AACACTTGGGAATGCTCAAG+GGG | 0.627744 | 3.3:-87390692 | MS.gene014873:CDS |
| AATGGTGGTGATAATAGTGG+GGG | 0.629638 | 3.3:-87390520 | MS.gene014873:CDS |
| AGGTGTAATTTACAGGTGAG+AGG | 0.630097 | 3.3:+87392487 | None:intergenic |
| ATTGGTTCGAAATTAAGGGA+AGG | 0.631020 | 3.3:-87392039 | MS.gene014873:CDS |
| TAATGGTGGTGATAATAGTG+GGG | 0.634711 | 3.3:-87390521 | MS.gene014873:CDS |
| GATTACTTAATGATAAATGG+TGG | 0.642965 | 3.3:-87390616 | MS.gene014873:CDS |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 3.3:-87390581 | MS.gene014873:CDS |
| TGGACAGTCTTAAACAAAGG+TGG | 0.647859 | 3.3:+87390442 | None:intergenic |
| TATGAGAAATATTCATGACC+TGG | 0.653740 | 3.3:+87392138 | None:intergenic |
| AAGACGGAGTAGGATTGACC+GGG | 0.657113 | 3.3:+87392513 | None:intergenic |
| TGCTAAGATTAATGCCGAGG+CGG | 0.661554 | 3.3:-87390578 | MS.gene014873:CDS |
| TAGCGTTCAATATGAAACCA+AGG | 0.661629 | 3.3:-87391698 | MS.gene014873:intron |
| AAGAAAGCATGGATTCTACC+CGG | 0.664070 | 3.3:-87392531 | MS.gene014873:CDS |
| GGAAGCAGCGAATCAAGCAA+GGG | 0.666342 | 3.3:-87392094 | MS.gene014873:CDS |
| TGATTGGAGAGTTTATCATG+AGG | 0.672105 | 3.3:+87392348 | None:intergenic |
| AAGACTCCCATCCAAGCAGG+TGG | 0.679480 | 3.3:+87390400 | None:intergenic |
| ATTAATGCCGAGGCGGTACG+CGG | 0.680968 | 3.3:-87390571 | MS.gene014873:CDS |
| ACAAGGAGGGAATTAAAGTG+AGG | 0.693697 | 3.3:-87391942 | MS.gene014873:CDS |
| CTTTCCTTATCATCCACACG+AGG | 0.701431 | 3.3:+87392399 | None:intergenic |
| CCATTGTCATTGAAGCAGCG+AGG | 0.707893 | 3.3:+87392280 | None:intergenic |
| GACCGATAGTGAAGACAGCG+GGG | 0.713902 | 3.3:+87392421 | None:intergenic |
| GCTGTACAAGAAACAAAAGG+AGG | 0.725038 | 3.3:-87390848 | MS.gene014873:CDS |
| GAAAGCGGCTTGGACTAAGG+CGG | 0.747622 | 3.3:-87391848 | MS.gene014873:CDS |
| AGGACCGATAGTGAAGACAG+CGG | 0.753084 | 3.3:+87392419 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATAGTTAATACCTATT+AGG | - | chr3.3:87392011-87392030 | MS.gene014873:CDS | 15.0% |
| !! | TAGGTATTAACTATTAATTT+AGG | + | chr3.3:87392009-87392028 | None:intergenic | 15.0% |
| !!! | GTTGCATTTTTTTAAATAAT+TGG | - | chr3.3:87391739-87391758 | MS.gene014873:CDS | 15.0% |
| !! | CATGAATATTTCTCATATTT+GGG | - | chr3.3:87390849-87390868 | MS.gene014873:CDS | 20.0% |
| !! | TCATGAATATTTCTCATATT+TGG | - | chr3.3:87390848-87390867 | MS.gene014873:CDS | 20.0% |
| !!! | AGTTTAAACAAGAAGTATTT+GGG | - | chr3.3:87390748-87390767 | MS.gene014873:CDS | 20.0% |
| !!! | TGATTATTGATTCTGTTATA+TGG | - | chr3.3:87391706-87391725 | MS.gene014873:CDS | 20.0% |
| ! | AATTCTCTATTAAGCTGTTA+TGG | + | chr3.3:87391795-87391814 | None:intergenic | 25.0% |
| ! | AGGGATTACTTAATGATAAA+TGG | - | chr3.3:87392362-87392381 | MS.gene014873:CDS | 25.0% |
| ! | ATGCATTATACAATTACAAG+TGG | - | chr3.3:87391963-87391982 | MS.gene014873:CDS | 25.0% |
| ! | ATTTATTTACTAGGCCTAAT+AGG | + | chr3.3:87392028-87392047 | None:intergenic | 25.0% |
| ! | CATTTGGTTAAACCTTAAAA+GGG | + | chr3.3:87391566-87391585 | None:intergenic | 25.0% |
| ! | GATTACTTAATGATAAATGG+TGG | - | chr3.3:87392365-87392384 | MS.gene014873:CDS | 25.0% |
| ! | TAGCAACAAGATTAATAGTT+TGG | - | chr3.3:87391441-87391460 | MS.gene014873:intron | 25.0% |
| ! | TCATTTGGTTAAACCTTAAA+AGG | + | chr3.3:87391567-87391586 | None:intergenic | 25.0% |
| ! | TGTAAATCAATAAACCGAAT+TGG | + | chr3.3:87390794-87390813 | None:intergenic | 25.0% |
| !!! | GAGTTTAAACAAGAAGTATT+TGG | - | chr3.3:87390747-87390766 | MS.gene014873:CDS | 25.0% |
| !!! | TTTTTTCGTGATTGAAATTC+TGG | - | chr3.3:87392081-87392100 | MS.gene014873:CDS | 25.0% |
| AAAAATTGATGCAGAGACAA+AGG | - | chr3.3:87390986-87391005 | MS.gene014873:intron | 30.0% | |
| AACAAGTTCCTTAACATGAT+TGG | + | chr3.3:87390652-87390671 | None:intergenic | 30.0% | |
| AAGATTAGCATTTGGACTAA+TGG | - | chr3.3:87392443-87392462 | MS.gene014873:CDS | 30.0% | |
| AGAGCTATATGCAAAGAAAA+AGG | - | chr3.3:87392250-87392269 | MS.gene014873:CDS | 30.0% | |
| ATTGAAATTCTGGATGGTAT+AGG | - | chr3.3:87392091-87392110 | MS.gene014873:CDS | 30.0% | |
| CAACTTGAACTAAACCAATT+CGG | - | chr3.3:87390777-87390796 | MS.gene014873:CDS | 30.0% | |
| TAAACTCTCCAATCATGTTA+AGG | - | chr3.3:87390641-87390660 | MS.gene014873:CDS | 30.0% | |
| TACTATAATGAGATCACAGT+TGG | - | chr3.3:87391890-87391909 | MS.gene014873:CDS | 30.0% | |
| TATGAGAAATATTCATGACC+TGG | + | chr3.3:87390846-87390865 | None:intergenic | 30.0% | |
| TTAGTCCAAATGCTAATCTT+AGG | + | chr3.3:87392443-87392462 | None:intergenic | 30.0% | |
| ! | ACTTCAAAGGTGTAATTTAC+AGG | + | chr3.3:87390504-87390523 | None:intergenic | 30.0% |
| ! | ATATTTTTCTATCGAGTAGC+GGG | + | chr3.3:87391945-87391964 | None:intergenic | 30.0% |
| ! | CATATTTTTCTATCGAGTAG+CGG | + | chr3.3:87391946-87391965 | None:intergenic | 30.0% |
| ! | TCAACACTATTTTACAACCT+TGG | - | chr3.3:87391814-87391833 | MS.gene014873:CDS | 30.0% |
| !! | GTTTTAAACTCTCCCTTTTA+AGG | - | chr3.3:87391551-87391570 | MS.gene014873:intron | 30.0% |
| !! | TATTTTACAACCTTGGTGAT+TGG | - | chr3.3:87391821-87391840 | MS.gene014873:CDS | 30.0% |
| !! | TGAGATTGGTTCGAAATTAA+GGG | - | chr3.3:87390938-87390957 | MS.gene014873:intron | 30.0% |
| AAACAACTACACAGCTGTAA+GGG | - | chr3.3:87392343-87392362 | MS.gene014873:CDS | 35.0% | |
| ACTCATGATCAATGGACAAT+GGG | - | chr3.3:87391592-87391611 | MS.gene014873:intron | 35.0% | |
| ATAGGTACAAGAAGCAAACT+GGG | - | chr3.3:87392109-87392128 | MS.gene014873:CDS | 35.0% | |
| ATCATGAGGGGAAATTAGTT+TGG | + | chr3.3:87390622-87390641 | None:intergenic | 35.0% | |
| ATTAGCATTTGGACTAATGG+TGG | - | chr3.3:87392446-87392465 | MS.gene014873:CDS | 35.0% | |
| ATTGGAGAGTTTATCATGAG+GGG | + | chr3.3:87390634-87390653 | None:intergenic | 35.0% | |
| CTTGTTCAAGGAATCATTGA+AGG | - | chr3.3:87390666-87390685 | MS.gene014873:CDS | 35.0% | |
| GATTGGAGAGTTTATCATGA+GGG | + | chr3.3:87390635-87390654 | None:intergenic | 35.0% | |
| GCTATATGCAAAGAAAAAGG+AGG | - | chr3.3:87392253-87392272 | MS.gene014873:CDS | 35.0% | |
| GTATCAGAAGCTAAGATGAA+AGG | - | chr3.3:87390915-87390934 | MS.gene014873:intron | 35.0% | |
| TAAAGCTTGCAAAGAAAGCA+TGG | - | chr3.3:87390439-87390458 | MS.gene014873:CDS | 35.0% | |
| TAAGACTGTCCATGAACAAA+CGG | - | chr3.3:87392550-87392569 | MS.gene014873:CDS | 35.0% | |
| TACCTTGTGATAACTGGAAT+CGG | - | chr3.3:87390405-87390424 | MS.gene014873:CDS | 35.0% | |
| TAGCGTTCAATATGAAACCA+AGG | - | chr3.3:87391283-87391302 | MS.gene014873:intron | 35.0% | |
| TATAGGTACAAGAAGCAAAC+TGG | - | chr3.3:87392108-87392127 | MS.gene014873:CDS | 35.0% | |
| TCACAATACCTTGTGATAAC+TGG | - | chr3.3:87390399-87390418 | MS.gene014873:CDS | 35.0% | |
| TCATGGACAGTCTTAAACAA+AGG | + | chr3.3:87392545-87392564 | None:intergenic | 35.0% | |
| TGAATTGGCTAAGAAGAAAG+CGG | - | chr3.3:87391118-87391137 | MS.gene014873:intron | 35.0% | |
| TGATTGGAGAGTTTATCATG+AGG | + | chr3.3:87390636-87390655 | None:intergenic | 35.0% | |
| TGCATGTACTAAACTAACCT+TGG | + | chr3.3:87391303-87391322 | None:intergenic | 35.0% | |
| TTCGTGATTGAAATTCTGGA+TGG | - | chr3.3:87392085-87392104 | MS.gene014873:CDS | 35.0% | |
| TTGAGCCTAAGATTAGCATT+TGG | - | chr3.3:87392435-87392454 | MS.gene014873:CDS | 35.0% | |
| TTGATTGATACCAATCACCA+AGG | + | chr3.3:87391834-87391853 | None:intergenic | 35.0% | |
| ! | ACTAATGGTGGTGATAATAG+TGG | - | chr3.3:87392458-87392477 | MS.gene014873:CDS | 35.0% |
| ! | AGCGATTTTGTATGAGAAGA+AGG | - | chr3.3:87392160-87392179 | MS.gene014873:CDS | 35.0% |
| ! | CATGTTAAGGAACTTGTTCA+AGG | - | chr3.3:87390654-87390673 | MS.gene014873:CDS | 35.0% |
| ! | CTAATGGTGGTGATAATAGT+GGG | - | chr3.3:87392459-87392478 | MS.gene014873:CDS | 35.0% |
| ! | TAATGGTGGTGATAATAGTG+GGG | - | chr3.3:87392460-87392479 | MS.gene014873:CDS | 35.0% |
| ! | TATTTTTCTATCGAGTAGCG+GGG | + | chr3.3:87391944-87391963 | None:intergenic | 35.0% |
| ! | TTAGTTTGGCGTATTTGAGA+AGG | + | chr3.3:87390608-87390627 | None:intergenic | 35.0% |
| !! | ATTGGTTCGAAATTAAGGGA+AGG | - | chr3.3:87390942-87390961 | MS.gene014873:intron | 35.0% |
| !! | GTGAGATTGGTTCGAAATTA+AGG | - | chr3.3:87390937-87390956 | MS.gene014873:intron | 35.0% |
| AAAGGTTATTGCGATGCAGA+GGG | - | chr3.3:87391004-87391023 | MS.gene014873:intron | 40.0% | |
| AAGACTGTCCATGAACAAAC+GGG | - | chr3.3:87392551-87392570 | MS.gene014873:CDS | 40.0% | |
| ACAAGGAGGGAATTAAAGTG+AGG | - | chr3.3:87391039-87391058 | MS.gene014873:intron | 40.0% | |
| AGCAACTTCTTTCATACCCA+TGG | + | chr3.3:87392501-87392520 | None:intergenic | 40.0% | |
| AGGTGTAATTTACAGGTGAG+AGG | + | chr3.3:87390497-87390516 | None:intergenic | 40.0% | |
| AGTTACAAGGTGAAGTTGAG+AGG | - | chr3.3:87391207-87391226 | MS.gene014873:intron | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | - | chr3.3:87392500-87392519 | MS.gene014873:CDS | 40.0% | |
| CACTCATGATCAATGGACAA+TGG | - | chr3.3:87391591-87391610 | MS.gene014873:intron | 40.0% | |
| CAGAGGGAATTGTAACACTT+GGG | - | chr3.3:87392276-87392295 | MS.gene014873:CDS | 40.0% | |
| GAAACAACTACACAGCTGTA+AGG | - | chr3.3:87392342-87392361 | MS.gene014873:CDS | 40.0% | |
| GATCATGAGTGTGACTCATT+TGG | + | chr3.3:87391582-87391601 | None:intergenic | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | - | chr3.3:87392400-87392419 | MS.gene014873:CDS | 40.0% | |
| GCTAAGATGAAAGGTGAGAT+TGG | - | chr3.3:87390924-87390943 | MS.gene014873:intron | 40.0% | |
| GCTCATTGCTTGAACTTCAA+AGG | + | chr3.3:87390517-87390536 | None:intergenic | 40.0% | |
| GCTGTACAAGAAACAAAAGG+AGG | - | chr3.3:87392133-87392152 | MS.gene014873:CDS | 40.0% | |
| GGAGCTGTACAAGAAACAAA+AGG | - | chr3.3:87392130-87392149 | MS.gene014873:CDS | 40.0% | |
| GTAACATTCCCGTTTGTTCA+TGG | + | chr3.3:87392562-87392581 | None:intergenic | 40.0% | |
| GTACAAGAAACAAAAGGAGG+CGG | - | chr3.3:87392136-87392155 | MS.gene014873:CDS | 40.0% | |
| TAAAGTGAGGACTGAAGTGA+AGG | - | chr3.3:87391052-87391071 | MS.gene014873:intron | 40.0% | |
| TAACACTTGGGAATGCTCAA+GGG | - | chr3.3:87392288-87392307 | MS.gene014873:CDS | 40.0% | |
| TGAGTCACACTCATGATCAA+TGG | - | chr3.3:87391584-87391603 | MS.gene014873:intron | 40.0% | |
| TGCTTCAATGACAATGGAAG+AGG | - | chr3.3:87390707-87390726 | MS.gene014873:CDS | 40.0% | |
| TGGACAGTCTTAAACAAAGG+TGG | + | chr3.3:87392542-87392561 | None:intergenic | 40.0% | |
| TTCCGATTCCAGTTATCACA+AGG | + | chr3.3:87390410-87390429 | None:intergenic | 40.0% | |
| TTTGGGCCAAAAGACACAAA+TGG | - | chr3.3:87390866-87390885 | MS.gene014873:CDS | 40.0% | |
| TTTGTATGAGAAGAAGGCAG+AGG | - | chr3.3:87392166-87392185 | MS.gene014873:CDS | 40.0% | |
| ! | AAACAGTTAGTTGATGTGCC+AGG | - | chr3.3:87390825-87390844 | MS.gene014873:CDS | 40.0% |
| ! | AAGAAAGCATGGATTCTACC+CGG | - | chr3.3:87390450-87390469 | MS.gene014873:CDS | 40.0% |
| ! | AATAGTGGGGGAATAACTGA+AGG | - | chr3.3:87392473-87392492 | MS.gene014873:CDS | 40.0% |
| ! | AATGGTGGTGATAATAGTGG+GGG | - | chr3.3:87392461-87392480 | MS.gene014873:CDS | 40.0% |
| ! | ACAATGGAAGAGGTTTTCAG+AGG | - | chr3.3:87390717-87390736 | MS.gene014873:CDS | 40.0% |
| ! | ATTTTTCTATCGAGTAGCGG+GGG | + | chr3.3:87391943-87391962 | None:intergenic | 40.0% |
| ! | CTGCTTCCATTTGTGTCTTT+TGG | + | chr3.3:87390875-87390894 | None:intergenic | 40.0% |
| !! | ATTGAACGCTAGCTTTGCTA+AGG | + | chr3.3:87391274-87391293 | None:intergenic | 40.0% |
| AACACTTGGGAATGCTCAAG+GGG | - | chr3.3:87392289-87392308 | MS.gene014873:CDS | 45.0% | |
| AATGTTACCACCTGCTTGGA+TGG | - | chr3.3:87392574-87392593 | MS.gene014873:CDS | 45.0% | |
| AGTGCACTTCTGAATGCACT+TGG | - | chr3.3:87392320-87392339 | MS.gene014873:CDS | 45.0% | |
| ATGTTACCACCTGCTTGGAT+GGG | - | chr3.3:87392575-87392594 | MS.gene014873:CDS | 45.0% | |
| CAAAGGTTATTGCGATGCAG+AGG | - | chr3.3:87391003-87391022 | MS.gene014873:intron | 45.0% | |
| CTAAGGGATGCTGAGTTACA+AGG | - | chr3.3:87391194-87391213 | MS.gene014873:intron | 45.0% | |
| CTTTCCTTATCATCCACACG+AGG | + | chr3.3:87390585-87390604 | None:intergenic | 45.0% | |
| GAATCAGAGAGAAGCTGAAG+TGG | - | chr3.3:87391082-87391101 | MS.gene014873:intron | 45.0% | |
| GCAAAGAAAAAGGAGGCAGA+GGG | - | chr3.3:87392260-87392279 | MS.gene014873:CDS | 45.0% | |
| GCAGAGGGAATTGTAACACT+TGG | - | chr3.3:87392275-87392294 | MS.gene014873:CDS | 45.0% | |
| GGCTGAGGCTAATTCTGAAT+TGG | - | chr3.3:87391103-87391122 | MS.gene014873:intron | 45.0% | |
| GTAACACTTGGGAATGCTCA+AGG | - | chr3.3:87392287-87392306 | MS.gene014873:CDS | 45.0% | |
| TGCAAAGAAAAAGGAGGCAG+AGG | - | chr3.3:87392259-87392278 | MS.gene014873:CDS | 45.0% | |
| TGCTAAGATTAATGCCGAGG+CGG | - | chr3.3:87392403-87392422 | MS.gene014873:CDS | 45.0% | |
| !! | GGAATAACTGAAGGTGCCAT+GGG | - | chr3.3:87392482-87392501 | MS.gene014873:CDS | 45.0% |
| !! | TGCTAAAGCCGTAGCTCTAA+GGG | - | chr3.3:87391178-87391197 | MS.gene014873:intron | 45.0% |
| !! | ATATATATAATTTATTTACT+AGG | + | chr3.3:87392037-87392056 | None:intergenic | 5.0% |
| !!! | ATAAAAGATTAATATTTTTA+AGG | - | chr3.3:87391617-87391636 | MS.gene014873:intron | 5.0% |
| AAGACAGCGGGGAGAACAAA+AGG | + | chr3.3:87390552-87390571 | None:intergenic | 50.0% | |
| AAGACGGAGTAGGATTGACC+GGG | + | chr3.3:87390471-87390490 | None:intergenic | 50.0% | |
| AGGACCGATAGTGAAGACAG+CGG | + | chr3.3:87390565-87390584 | None:intergenic | 50.0% | |
| CCATTGTCATTGAAGCAGCG+AGG | + | chr3.3:87390704-87390723 | None:intergenic | 50.0% | |
| CCTCGCTGCTTCAATGACAA+TGG | - | chr3.3:87390701-87390720 | MS.gene014873:CDS | 50.0% | |
| CTCAGCATCCCTTAGAGCTA+CGG | + | chr3.3:87391189-87391208 | None:intergenic | 50.0% | |
| GAAGACGGAGTAGGATTGAC+CGG | + | chr3.3:87390472-87390491 | None:intergenic | 50.0% | |
| GGAAGCAGCGAATCAAGCAA+GGG | - | chr3.3:87390887-87390906 | MS.gene014873:intron | 50.0% | |
| TACAGGTGAGAGGTCGAAGA+CGG | + | chr3.3:87390487-87390506 | None:intergenic | 50.0% | |
| TGGAAGCAGCGAATCAAGCA+AGG | - | chr3.3:87390886-87390905 | MS.gene014873:intron | 50.0% | |
| TGGCTAAGAAGAAAGCGGCT+TGG | - | chr3.3:87391123-87391142 | MS.gene014873:intron | 50.0% | |
| ! | CTGCTAAAGCCGTAGCTCTA+AGG | - | chr3.3:87391177-87391196 | MS.gene014873:intron | 50.0% |
| ! | GAAGAAAGCGGCTTGGACTA+AGG | - | chr3.3:87391130-87391149 | MS.gene014873:intron | 50.0% |
| ! | GGCTTTAGCAGCCTCAACTT+CGG | + | chr3.3:87391168-87391187 | None:intergenic | 50.0% |
| ! | TAGCGGGGGAGCTAACTTTT+GGG | + | chr3.3:87391929-87391948 | None:intergenic | 50.0% |
| !! | GGGAATAACTGAAGGTGCCA+TGG | - | chr3.3:87392481-87392500 | MS.gene014873:CDS | 50.0% |
| AAGACTCCCATCCAAGCAGG+TGG | + | chr3.3:87392584-87392603 | None:intergenic | 55.0% | |
| ATTAATGCCGAGGCGGTACG+CGG | - | chr3.3:87392410-87392429 | MS.gene014873:CDS | 55.0% | |
| CGGGAATGTTACCACCTGCT+TGG | - | chr3.3:87392570-87392589 | MS.gene014873:CDS | 55.0% | |
| CGGTCCTCGTGTGGATGATA+AGG | - | chr3.3:87390578-87390597 | MS.gene014873:CDS | 55.0% | |
| CTCCCCGCTGTCTTCACTAT+CGG | - | chr3.3:87390558-87390577 | MS.gene014873:CDS | 55.0% | |
| CTTCACTATCGGTCCTCGTG+TGG | - | chr3.3:87390569-87390588 | MS.gene014873:CDS | 55.0% | |
| GACCGATAGTGAAGACAGCG+GGG | + | chr3.3:87390563-87390582 | None:intergenic | 55.0% | |
| GAGAGAAGCTGAAGTGGCTG+AGG | - | chr3.3:87391088-87391107 | MS.gene014873:intron | 55.0% | |
| GGACCGATAGTGAAGACAGC+GGG | + | chr3.3:87390564-87390583 | None:intergenic | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | - | chr3.3:87391008-87391027 | MS.gene014873:intron | 55.0% | |
| TGAGAGGTCGAAGACGGAGT+AGG | + | chr3.3:87390481-87390500 | None:intergenic | 55.0% | |
| TTGGACTAAGGCGGCTCAAG+TGG | - | chr3.3:87391142-87391161 | MS.gene014873:intron | 55.0% | |
| ! | GAAAGCGGCTTGGACTAAGG+CGG | - | chr3.3:87391133-87391152 | MS.gene014873:intron | 55.0% |
| !! | GTAGCGGGGGAGCTAACTTT+TGG | + | chr3.3:87391930-87391949 | None:intergenic | 55.0% |
| GGCAAGACTCCCATCCAAGC+AGG | + | chr3.3:87392587-87392606 | None:intergenic | 60.0% | |
| GGCTCAAGTGGCCGAAGTTG+AGG | - | chr3.3:87391154-87391173 | MS.gene014873:intron | 60.0% | |
| CTCAAGTCCGCGTACCGCCT+CGG | + | chr3.3:87392420-87392439 | None:intergenic | 65.0% | |
| GCGATGCAGAGGGCTGGAGA+GGG | - | chr3.3:87391014-87391033 | MS.gene014873:intron | 65.0% | |
| GCTGGAGAGGGCGACAAGGA+GGG | - | chr3.3:87391026-87391045 | MS.gene014873:intron | 65.0% | |
| TGCGATGCAGAGGGCTGGAG+AGG | - | chr3.3:87391013-87391032 | MS.gene014873:intron | 65.0% | |
| GAGGGCTGGAGAGGGCGACA+AGG | - | chr3.3:87391022-87391041 | MS.gene014873:intron | 70.0% | |
| GGCTGGAGAGGGCGACAAGG+AGG | - | chr3.3:87391025-87391044 | MS.gene014873:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 87390378 | 87392625 | 87390378 | ID=MS.gene014873 |
| chr3.3 | mRNA | 87390378 | 87392625 | 87390378 | ID=MS.gene014873.t1;Parent=MS.gene014873 |
| chr3.3 | exon | 87391699 | 87392625 | 87391699 | ID=MS.gene014873.t1.exon1;Parent=MS.gene014873.t1 |
| chr3.3 | CDS | 87391699 | 87392625 | 87391699 | ID=cds.MS.gene014873.t1;Parent=MS.gene014873.t1 |
| chr3.3 | exon | 87390378 | 87390890 | 87390378 | ID=MS.gene014873.t1.exon2;Parent=MS.gene014873.t1 |
| chr3.3 | CDS | 87390378 | 87390890 | 87390378 | ID=cds.MS.gene014873.t1;Parent=MS.gene014873.t1 |
| Gene Sequence |
| Protein sequence |
