Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072850.t1 | XP_003603332.1 | 98.1 | 480 | 9 | 0 | 1 | 480 | 1 | 480 | 6.70E-192 | 680.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072850.t1 | D2XNQ9 | 98.1 | 480 | 9 | 0 | 1 | 480 | 1 | 480 | 1.6e-194 | 680.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072850.t1 | G7JAE4 | 98.1 | 480 | 9 | 0 | 1 | 480 | 1 | 480 | 4.9e-192 | 680.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072850.t1 | MTR_3g106420 | 97.500 | 480 | 12 | 0 | 1 | 480 | 1 | 480 | 0.0 | 954 |
| MS.gene072850.t1 | MTR_3g106480 | 93.305 | 478 | 32 | 0 | 3 | 480 | 1 | 478 | 0.0 | 912 |
| MS.gene072850.t1 | MTR_3g106485 | 94.561 | 478 | 22 | 2 | 3 | 480 | 1 | 474 | 0.0 | 887 |
| MS.gene072850.t1 | MTR_1g083190 | 93.542 | 480 | 23 | 1 | 1 | 480 | 1 | 472 | 0.0 | 881 |
| MS.gene072850.t1 | MTR_1g073400 | 91.423 | 478 | 37 | 1 | 3 | 480 | 1 | 474 | 0.0 | 844 |
| MS.gene072850.t1 | MTR_1g115145 | 89.353 | 479 | 44 | 3 | 3 | 480 | 1 | 473 | 0.0 | 844 |
| MS.gene072850.t1 | MTR_1g071130 | 86.192 | 478 | 37 | 2 | 3 | 480 | 1 | 449 | 0.0 | 835 |
| MS.gene072850.t1 | MTR_3g106430 | 91.824 | 477 | 35 | 2 | 3 | 479 | 1 | 473 | 0.0 | 834 |
| MS.gene072850.t1 | MTR_3g106470 | 83.229 | 477 | 24 | 2 | 3 | 479 | 32 | 452 | 0.0 | 756 |
| MS.gene072850.t1 | MTR_8g063830 | 80.645 | 465 | 49 | 5 | 3 | 466 | 1 | 425 | 0.0 | 672 |
| MS.gene072850.t1 | MTR_3g065540 | 64.348 | 115 | 14 | 1 | 42 | 156 | 14 | 101 | 5.35e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072850.t1 | AT5G25260 | 73.996 | 473 | 111 | 2 | 3 | 475 | 1 | 461 | 0.0 | 726 |
| MS.gene072850.t1 | AT5G25250 | 74.207 | 473 | 108 | 2 | 3 | 475 | 1 | 459 | 0.0 | 717 |
| MS.gene072850.t1 | AT5G64870 | 70.551 | 472 | 128 | 1 | 4 | 475 | 3 | 463 | 0.0 | 654 |
Find 120 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAGTATTTCTCATATT+TGG | 0.110239 | 3.2:+87591331 | MS.gene072850:CDS |
| TTGAGCCTAAGATTAGTATT+TGG | 0.251063 | 3.2:+87592955 | MS.gene072850:CDS |
| CAAAGAAGGCCGTGGCTCTA+AGG | 0.288894 | 3.2:+87591660 | MS.gene072850:CDS |
| CATGAGTATTTCTCATATTT+GGG | 0.292202 | 3.2:+87591332 | MS.gene072850:CDS |
| AACAAGTTCATTAACATGAT+TGG | 0.311801 | 3.2:-87591132 | None:intergenic |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 3.2:+87591407 | MS.gene072850:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.347159 | 3.2:+87592882 | MS.gene072850:CDS |
| CATCAAGAATGAAAATTTAC+CGG | 0.347355 | 3.2:+87590847 | None:intergenic |
| CTCCCCGCTGTCTTCACAAT+TGG | 0.348065 | 3.2:+87591041 | MS.gene072850:CDS |
| CATGTTGCCTCCTGCTTGGA+TGG | 0.350630 | 3.2:+87593094 | MS.gene072850:CDS |
| CAACTTGAGTTGAATCAATT+CGG | 0.350972 | 3.2:+87591260 | MS.gene072850:CDS |
| AGAGCTATACACAAAGAAAA+AGG | 0.360858 | 3.2:+87592770 | MS.gene072850:CDS |
| GAAGAAGGCGGCTTGGACTA+AGG | 0.362386 | 3.2:+87591613 | MS.gene072850:CDS |
| TGAAGGTACAAGAAGCAAAC+TGG | 0.368982 | 3.2:+87592628 | MS.gene072850:intron |
| GTGAAATTGGTTCAAAATTG+AGG | 0.384625 | 3.2:+87591420 | MS.gene072850:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.384650 | 3.2:-87592960 | None:intergenic |
| AAGATTAGTATTTGGACTAA+TGG | 0.384982 | 3.2:+87592963 | MS.gene072850:CDS |
| ACTTCGAAGGTATAGTTTAC+CGG | 0.387396 | 3.2:-87590984 | None:intergenic |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 3.2:+87591295 | MS.gene072850:CDS |
| TCAGAATACCTTGTGATAAC+AGG | 0.405430 | 3.2:+87590882 | MS.gene072850:CDS |
| TGGTCCTCGTGTTGACGATC+AGG | 0.407219 | 3.2:+87591061 | MS.gene072850:CDS |
| GGCTTGGACTAAGGCGGCTC+AGG | 0.415815 | 3.2:+87591622 | MS.gene072850:CDS |
| CATGTTAATGAACTTGTTCA+AGG | 0.419850 | 3.2:+87591137 | MS.gene072850:CDS |
| TGGACTAATGGTGGTGATAA+TGG | 0.423773 | 3.2:+87592975 | MS.gene072850:CDS |
| AGCTGGAGAGGGTGAGAAGG+AGG | 0.426976 | 3.2:+87591508 | MS.gene072850:CDS |
| ATCATGCGGTGAAATAAGTT+TGG | 0.432419 | 3.2:-87591102 | None:intergenic |
| TGAAATTGGTTCAAAATTGA+GGG | 0.433449 | 3.2:+87591421 | MS.gene072850:CDS |
| CGGTCAATCCTGCACCGTCT+TGG | 0.457748 | 3.2:+87590953 | MS.gene072850:CDS |
| CAGGCATGTTGCCTCCTGCT+TGG | 0.465328 | 3.2:+87593090 | MS.gene072850:CDS |
| AAGCAATTGGTGGACGTGCC+CGG | 0.467503 | 3.2:+87591308 | MS.gene072850:CDS |
| CAAGACGGTGCAGGATTGAC+CGG | 0.470050 | 3.2:-87590952 | None:intergenic |
| GGGAATAACTGAAGGTGCCA+TGG | 0.487818 | 3.2:+87593001 | MS.gene072850:CDS |
| CTCAAGTCCGCGTACCGCCT+CGG | 0.491620 | 3.2:-87592937 | None:intergenic |
| ATTCTGATGCTTTCGCGACC+CGG | 0.494061 | 3.2:-87590866 | None:intergenic |
| GAGAGCTGGAGAGGGTGAGA+AGG | 0.498051 | 3.2:+87591505 | MS.gene072850:CDS |
| GGACCAATTGTGAAGACAGC+GGG | 0.501529 | 3.2:-87591044 | None:intergenic |
| GAAACGACTACACAGCTGTA+AGG | 0.502820 | 3.2:+87592862 | MS.gene072850:CDS |
| TGCTTCCATGACGATGGAGG+AGG | 0.505459 | 3.2:+87591190 | MS.gene072850:CDS |
| GCAACATGCCTGTCTGCTCA+TGG | 0.507208 | 3.2:-87593079 | None:intergenic |
| GCTGGAGAGGGTGAGAAGGA+GGG | 0.508003 | 3.2:+87591509 | MS.gene072850:CDS |
| GGCTGAAGTCGAGGCAAAGA+AGG | 0.508773 | 3.2:+87591646 | MS.gene072850:CDS |
| AGCAATTCTGTATGAGAAGA+AGG | 0.509643 | 3.2:+87592680 | MS.gene072850:CDS |
| TTGGACTAAGGCGGCTCAGG+TGG | 0.510364 | 3.2:+87591625 | MS.gene072850:CDS |
| ATGTTGCCTCCTGCTTGGAT+GGG | 0.519619 | 3.2:+87593095 | MS.gene072850:CDS |
| AAGACAGCGGGGAGAACAAA+AGG | 0.520506 | 3.2:-87591032 | None:intergenic |
| GTTATTGCGATGCAGAGAGC+TGG | 0.520901 | 3.2:+87591491 | MS.gene072850:CDS |
| TGGCTAAGAAGAAGGCGGCT+TGG | 0.522658 | 3.2:+87591606 | MS.gene072850:CDS |
| GAGAACAAAAGGAAGTTTCT+CGG | 0.527868 | 3.2:-87591021 | None:intergenic |
| AAAGAAGGCCGTGGCTCTAA+GGG | 0.531548 | 3.2:+87591661 | MS.gene072850:CDS |
| ATTAGTATTTGGACTAATGG+TGG | 0.532835 | 3.2:+87592966 | MS.gene072850:CDS |
| TTCTGAGTTGGCTAAGAAGA+AGG | 0.532968 | 3.2:+87591598 | MS.gene072850:CDS |
| TAAGTTTGGCGTATTTGAGA+AGG | 0.534048 | 3.2:-87591088 | None:intergenic |
| GGAATAACTGAAGGTGCCAT+GGG | 0.534697 | 3.2:+87593002 | MS.gene072850:CDS |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 3.2:-87593018 | None:intergenic |
| TGAGAGGTCCAAGACGGTGC+AGG | 0.535402 | 3.2:-87590961 | None:intergenic |
| TGCGAATGTTAAGCAATTGG+TGG | 0.535672 | 3.2:+87591298 | MS.gene072850:CDS |
| TGGAAGCAAAGAATCAAGCT+AGG | 0.539726 | 3.2:+87591369 | MS.gene072850:CDS |
| CACCGTCTTGGACCTCTCAC+CGG | 0.539796 | 3.2:+87590965 | MS.gene072850:CDS |
| GGCTCAAGCTAATTCTGAGT+TGG | 0.541784 | 3.2:+87591586 | MS.gene072850:CDS |
| GCGGAGGGAATTGTGACACT+TGG | 0.548836 | 3.2:+87592795 | MS.gene072850:CDS |
| ATATGAGAAATACTCATGAC+CGG | 0.550689 | 3.2:-87591327 | None:intergenic |
| GGTAAGGATCCCATCCAAGC+AGG | 0.550974 | 3.2:-87593104 | None:intergenic |
| GGCTCAGGTGGCTGAAGTCG+AGG | 0.551986 | 3.2:+87591637 | MS.gene072850:CDS |
| TAAAGTGAGGACTGAAGTGA+AGG | 0.556664 | 3.2:+87591535 | MS.gene072850:CDS |
| TAATGGTGGTGATAATGGTG+GGG | 0.564296 | 3.2:+87592980 | MS.gene072850:CDS |
| AAGACTGTCCATGAGCAGAC+AGG | 0.567979 | 3.2:+87593071 | MS.gene072850:CDS |
| ACTCATTGCTTGAACTTCGA+AGG | 0.568460 | 3.2:-87590997 | None:intergenic |
| AGTACACTTCTCAATGCACT+TGG | 0.570595 | 3.2:+87592840 | MS.gene072850:CDS |
| GAAAACCTCCTCCATCGTCA+TGG | 0.573319 | 3.2:-87591195 | None:intergenic |
| AATGGTGGTGATAATGGTGG+GGG | 0.578110 | 3.2:+87592981 | MS.gene072850:CDS |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 3.2:+87593020 | MS.gene072850:CDS |
| ATTGGTTCAAAATTGAGGGA+AGG | 0.580771 | 3.2:+87591425 | MS.gene072850:CDS |
| TGCGATGCAGAGAGCTGGAG+AGG | 0.580805 | 3.2:+87591496 | MS.gene072850:CDS |
| GTGACACTTGGGAATGCTCA+AGG | 0.583871 | 3.2:+87592807 | MS.gene072850:CDS |
| ATCAAGAATGAAAATTTACC+GGG | 0.586313 | 3.2:+87590848 | None:intergenic |
| AAGACGGTGCAGGATTGACC+GGG | 0.589066 | 3.2:-87590951 | None:intergenic |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 3.2:+87591565 | MS.gene072850:CDS |
| CGCTGCTTCCATGACGATGG+AGG | 0.591242 | 3.2:+87591187 | MS.gene072850:CDS |
| GGCAGAAGCACAGAAAGCAT+CGG | 0.592056 | 3.2:+87592707 | MS.gene072850:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 3.2:+87592686 | MS.gene072850:CDS |
| CGGAGGGAATTGTGACACTT+GGG | 0.601084 | 3.2:+87592796 | MS.gene072850:CDS |
| GCGATGCAGAGAGCTGGAGA+GGG | 0.601209 | 3.2:+87591497 | MS.gene072850:CDS |
| CTTGTTCAAGGAATCATCGA+AGG | 0.603463 | 3.2:+87591149 | MS.gene072850:CDS |
| AGTCGAGGCAAAGAAGGCCG+TGG | 0.604613 | 3.2:+87591652 | MS.gene072850:CDS |
| AGAAGGAGGGAATTAAAGTG+AGG | 0.607130 | 3.2:+87591522 | MS.gene072850:CDS |
| AGGTATAGTTTACCGGTGAG+AGG | 0.607470 | 3.2:-87590977 | None:intergenic |
| GAAGGTACAAGAAGCAAACT+GGG | 0.610335 | 3.2:+87592629 | MS.gene072850:intron |
| ACTAATGGTGGTGATAATGG+TGG | 0.611329 | 3.2:+87592978 | MS.gene072850:CDS |
| AAACGACTACACAGCTGTAA+GGG | 0.612269 | 3.2:+87592863 | MS.gene072850:CDS |
| CTAAGGGAAGCTGAGTTGCA+AGG | 0.613783 | 3.2:+87591677 | MS.gene072850:CDS |
| TTTGGGTCAAAAGACGCAGA+TGG | 0.613836 | 3.2:+87591349 | MS.gene072850:CDS |
| GTGTCAGAAGCTAAGATGAA+AGG | 0.614706 | 3.2:+87591398 | MS.gene072850:CDS |
| CTAATGGTGGTGATAATGGT+GGG | 0.616233 | 3.2:+87592979 | MS.gene072850:CDS |
| TCATGGACAGTCTTAAACAA+AGG | 0.617676 | 3.2:-87593062 | None:intergenic |
| TTGTTCAAGGAATCATCGAA+GGG | 0.619293 | 3.2:+87591150 | MS.gene072850:CDS |
| GGAAGCAAAGAATCAAGCTA+GGG | 0.626751 | 3.2:+87591370 | MS.gene072850:CDS |
| GTTCATTAACATGATTGGAG+TGG | 0.628854 | 3.2:-87591127 | None:intergenic |
| CTCAGCTTCCCTTAGAGCCA+CGG | 0.639524 | 3.2:-87591669 | None:intergenic |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 3.2:+87592920 | MS.gene072850:CDS |
| GCTGTACAAGAAACAGAAAG+AGG | 0.643966 | 3.2:+87592653 | MS.gene072850:CDS |
| ACTCGCTGCTTCCATGACGA+TGG | 0.644314 | 3.2:+87591184 | MS.gene072850:CDS |
| TATGAGAAATACTCATGACC+GGG | 0.646479 | 3.2:-87591326 | None:intergenic |
| TGGACAGTCTTAAACAAAGG+TGG | 0.649112 | 3.2:-87593059 | None:intergenic |
| TAGTGTTCAATATGAAACCA+AGG | 0.651992 | 3.2:+87591766 | MS.gene072850:CDS |
| GAAAATTGATGCAGAGACGA+AGG | 0.652587 | 3.2:+87591469 | MS.gene072850:CDS |
| AGTTGCAAGGTGAAGTTGAG+AGG | 0.653383 | 3.2:+87591690 | MS.gene072850:CDS |
| TGAGTTGGCTAAGAAGAAGG+CGG | 0.655618 | 3.2:+87591601 | MS.gene072850:CDS |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 3.2:+87592885 | MS.gene072850:CDS |
| TGCTAAGATTAATGCCGAGG+CGG | 0.661554 | 3.2:+87592923 | MS.gene072850:CDS |
| TACCGGTGAGAGGTCCAAGA+CGG | 0.667806 | 3.2:-87590967 | None:intergenic |
| AAGGATCCCATCCAAGCAGG+AGG | 0.669932 | 3.2:-87593101 | None:intergenic |
| TGAAAATACCTGTTATCACA+AGG | 0.669974 | 3.2:-87590890 | None:intergenic |
| ATTAATGCCGAGGCGGTACG+CGG | 0.680968 | 3.2:+87592930 | MS.gene072850:CDS |
| GATGAATGCTTTGACTACAA+CGG | 0.682872 | 3.2:+87591712 | MS.gene072850:CDS |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 3.2:-87591065 | None:intergenic |
| TGATTGGAGTGGCGATCATG+CGG | 0.696244 | 3.2:-87591116 | None:intergenic |
| TGTTCAAGGAATCATCGAAG+GGG | 0.705776 | 3.2:+87591151 | MS.gene072850:CDS |
| GACCAATTGTGAAGACAGCG+GGG | 0.714278 | 3.2:-87591043 | None:intergenic |
| AGGACCAATTGTGAAGACAG+CGG | 0.726189 | 3.2:-87591045 | None:intergenic |
| GAAGGCGGCTTGGACTAAGG+CGG | 0.753883 | 3.2:+87591616 | MS.gene072850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATATAATTAATCATG+TGG | + | chr3.2:87592419-87592438 | MS.gene072850:intron | 10.0% |
| !! | TTAATTGTATAATAATTCAT+AGG | - | chr3.2:87592330-87592349 | None:intergenic | 10.0% |
| !! | ATATCTTAAAGACTAATAAA+AGG | + | chr3.2:87591953-87591972 | MS.gene072850:intron | 15.0% |
| !! | TATTATTATGACATTATAGT+TGG | + | chr3.2:87592197-87592216 | MS.gene072850:intron | 15.0% |
| !!! | ATTACTGTAATTTAAGTTTT+TGG | + | chr3.2:87591895-87591914 | MS.gene072850:intron | 15.0% |
| !!! | TGATTATTGATTATGTTATA+TGG | + | chr3.2:87592036-87592055 | MS.gene072850:intron | 15.0% |
| !! | AGTGAATTATAATTTCATGA+TGG | + | chr3.2:87592358-87592377 | MS.gene072850:intron | 20.0% |
| !! | GTAATTTGAATTGAAGAATA+TGG | + | chr3.2:87592445-87592464 | MS.gene072850:intron | 20.0% |
| !! | TAACACTAATTACATTCTAA+TGG | + | chr3.2:87591929-87591948 | MS.gene072850:intron | 20.0% |
| !! | TCATAATAATAGTGTAACAA+AGG | - | chr3.2:87592188-87592207 | None:intergenic | 20.0% |
| !! | TGAAGTTATATATATTTCCA+TGG | - | chr3.2:87591802-87591821 | None:intergenic | 20.0% |
| !! | TTCATAGGTAATATTAACTA+TGG | - | chr3.2:87592315-87592334 | None:intergenic | 20.0% |
| !!! | AATATTTACCTTTTAAGTGT+TGG | + | chr3.2:87592547-87592566 | MS.gene072850:intron | 20.0% |
| !!! | TTTTTTGGTCATTAAAACTT+TGG | + | chr3.2:87592595-87592614 | MS.gene072850:intron | 20.0% |
| ! | AACAAGTTCATTAACATGAT+TGG | - | chr3.2:87591135-87591154 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+TGG | + | chr3.2:87592963-87592982 | MS.gene072850:CDS | 25.0% |
| ! | ATAAATCAATAGCTGTTGAT+AGG | + | chr3.2:87591865-87591884 | MS.gene072850:intron | 25.0% |
| ! | CATGAGTATTTCTCATATTT+GGG | + | chr3.2:87591332-87591351 | MS.gene072850:CDS | 25.0% |
| ! | TATAATAGCCAACACTTAAA+AGG | - | chr3.2:87592558-87592577 | None:intergenic | 25.0% |
| ! | TCATGAGTATTTCTCATATT+TGG | + | chr3.2:87591331-87591350 | MS.gene072850:CDS | 25.0% |
| ! | TGGCTATTATATAACTATAC+TGG | + | chr3.2:87592567-87592586 | MS.gene072850:intron | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | - | chr3.2:87592963-87592982 | None:intergenic | 25.0% |
| !! | TGAAATTGGTTCAAAATTGA+GGG | + | chr3.2:87591421-87591440 | MS.gene072850:CDS | 25.0% |
| !!! | ACTATACTGGATTACTTTTT+TGG | + | chr3.2:87592580-87592599 | MS.gene072850:intron | 25.0% |
| !!! | CATGAGTATTGAAAATTCAA+TGG | + | chr3.2:87592152-87592171 | MS.gene072850:intron | 25.0% |
| AAACAAGCTGAAAAGTGAAA+AGG | - | chr3.2:87592486-87592505 | None:intergenic | 30.0% | |
| AATTACTGGGAAACAATCAA+AGG | - | chr3.2:87592277-87592296 | None:intergenic | 30.0% | |
| AGAGCTATACACAAAGAAAA+AGG | + | chr3.2:87592770-87592789 | MS.gene072850:CDS | 30.0% | |
| ATATGAGAAATACTCATGAC+CGG | - | chr3.2:87591330-87591349 | None:intergenic | 30.0% | |
| ATTAGTATTTGGACTAATGG+TGG | + | chr3.2:87592966-87592985 | MS.gene072850:CDS | 30.0% | |
| TAGTGTTCAATATGAAACCA+AGG | + | chr3.2:87591766-87591785 | MS.gene072850:CDS | 30.0% | |
| TCAAACTCAAAAAGAAAGCA+TGG | + | chr3.2:87590922-87590941 | MS.gene072850:CDS | 30.0% | |
| TGAAAATACCTGTTATCACA+AGG | - | chr3.2:87590893-87590912 | None:intergenic | 30.0% | |
| TGTAATTAGTGTTATCACAG+AGG | - | chr3.2:87591923-87591942 | None:intergenic | 30.0% | |
| TTGAGCCTAAGATTAGTATT+TGG | + | chr3.2:87592955-87592974 | MS.gene072850:CDS | 30.0% | |
| TTGGTCATTAAAACTTTGGA+TGG | + | chr3.2:87592599-87592618 | MS.gene072850:intron | 30.0% | |
| ! | AAAAGGATAGAGAACTTTTG+AGG | + | chr3.2:87591970-87591989 | MS.gene072850:intron | 30.0% |
| ! | AGGGATTACTTGATGATAAA+TGG | + | chr3.2:87592882-87592901 | MS.gene072850:CDS | 30.0% |
| ! | CATGTTAATGAACTTGTTCA+AGG | + | chr3.2:87591137-87591156 | MS.gene072850:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | + | chr3.2:87592885-87592904 | MS.gene072850:CDS | 30.0% |
| ! | GTGAAATTGGTTCAAAATTG+AGG | + | chr3.2:87591420-87591439 | MS.gene072850:CDS | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+CGG | + | chr3.2:87591260-87591279 | MS.gene072850:CDS | 30.0% |
| AAGCTGAAAAGTGAAAAGGT+TGG | - | chr3.2:87592482-87592501 | None:intergenic | 35.0% | |
| ACTTTGGATGGTGTATATGA+AGG | + | chr3.2:87592611-87592630 | MS.gene072850:intron | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | + | chr3.2:87592680-87592699 | MS.gene072850:CDS | 35.0% | |
| ATACACAAAGAAAAAGGAGG+CGG | + | chr3.2:87592776-87592795 | MS.gene072850:CDS | 35.0% | |
| ATCATGCGGTGAAATAAGTT+TGG | - | chr3.2:87591105-87591124 | None:intergenic | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | + | chr3.2:87591295-87591314 | MS.gene072850:CDS | 35.0% | |
| GAGAACAAAAGGAAGTTTCT+CGG | - | chr3.2:87591024-87591043 | None:intergenic | 35.0% | |
| GATGAATGCTTTGACTACAA+CGG | + | chr3.2:87591712-87591731 | MS.gene072850:CDS | 35.0% | |
| GATTGTTTCCCAGTAATTGA+TGG | + | chr3.2:87592279-87592298 | MS.gene072850:intron | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | + | chr3.2:87591407-87591426 | MS.gene072850:CDS | 35.0% | |
| GCTATACACAAAGAAAAAGG+AGG | + | chr3.2:87592773-87592792 | MS.gene072850:CDS | 35.0% | |
| GTTCATTAACATGATTGGAG+TGG | - | chr3.2:87591130-87591149 | None:intergenic | 35.0% | |
| TAAGTTTGGCGTATTTGAGA+AGG | - | chr3.2:87591091-87591110 | None:intergenic | 35.0% | |
| TAGTGTAACAAAGGTTAAGC+AGG | - | chr3.2:87592179-87592198 | None:intergenic | 35.0% | |
| TATGAGAAATACTCATGACC+GGG | - | chr3.2:87591329-87591348 | None:intergenic | 35.0% | |
| TCAGAATACCTTGTGATAAC+AGG | + | chr3.2:87590882-87590901 | MS.gene072850:CDS | 35.0% | |
| TCATGGACAGTCTTAAACAA+AGG | - | chr3.2:87593065-87593084 | None:intergenic | 35.0% | |
| TTGTTCAAGGAATCATCGAA+GGG | + | chr3.2:87591150-87591169 | MS.gene072850:CDS | 35.0% | |
| ! | ACTTCGAAGGTATAGTTTAC+CGG | - | chr3.2:87590987-87591006 | None:intergenic | 35.0% |
| ! | ATTGGTTCAAAATTGAGGGA+AGG | + | chr3.2:87591425-87591444 | MS.gene072850:CDS | 35.0% |
| ! | TTAAGAGCTTTTGTCAGGTA+AGG | - | chr3.2:87593123-87593142 | None:intergenic | 35.0% |
| !! | AAGAAAGCATGGATTTTTCC+CGG | + | chr3.2:87590933-87590952 | MS.gene072850:CDS | 35.0% |
| !! | GACTTTTGGGAAACAATCAA+TGG | - | chr3.2:87592223-87592242 | None:intergenic | 35.0% |
| !! | GGTTTTTGAGAATCAAAGAG+AGG | + | chr3.2:87591556-87591575 | MS.gene072850:CDS | 35.0% |
| AAACGACTACACAGCTGTAA+GGG | + | chr3.2:87592863-87592882 | MS.gene072850:CDS | 40.0% | |
| ACTCATTGCTTGAACTTCGA+AGG | - | chr3.2:87591000-87591019 | None:intergenic | 40.0% | |
| AGAAGGAGGGAATTAAAGTG+AGG | + | chr3.2:87591522-87591541 | MS.gene072850:CDS | 40.0% | |
| AGCAACTTCTTTCATACCCA+TGG | - | chr3.2:87593021-87593040 | None:intergenic | 40.0% | |
| AGGCCAACTTCTCAATGTAT+CGG | - | chr3.2:87592257-87592276 | None:intergenic | 40.0% | |
| AGTACACTTCTCAATGCACT+TGG | + | chr3.2:87592840-87592859 | MS.gene072850:CDS | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | + | chr3.2:87593020-87593039 | MS.gene072850:CDS | 40.0% | |
| ATTCCAGCACCATCAATTAC+TGG | - | chr3.2:87592291-87592310 | None:intergenic | 40.0% | |
| CTTGTTCAAGGAATCATCGA+AGG | + | chr3.2:87591149-87591168 | MS.gene072850:CDS | 40.0% | |
| GAAAATTGATGCAGAGACGA+AGG | + | chr3.2:87591469-87591488 | MS.gene072850:CDS | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | + | chr3.2:87592920-87592939 | MS.gene072850:CDS | 40.0% | |
| GATTGTTTCCCAAAAGTCAG+AGG | + | chr3.2:87592225-87592244 | MS.gene072850:intron | 40.0% | |
| GCTGTACAAGAAACAGAAAG+AGG | + | chr3.2:87592653-87592672 | MS.gene072850:CDS | 40.0% | |
| GGAAGCAAAGAATCAAGCTA+GGG | + | chr3.2:87591370-87591389 | MS.gene072850:CDS | 40.0% | |
| GTGTCAGAAGCTAAGATGAA+AGG | + | chr3.2:87591398-87591417 | MS.gene072850:CDS | 40.0% | |
| TAAAGTGAGGACTGAAGTGA+AGG | + | chr3.2:87591535-87591554 | MS.gene072850:CDS | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | + | chr3.2:87591298-87591317 | MS.gene072850:CDS | 40.0% | |
| TGGAAGCAAAGAATCAAGCT+AGG | + | chr3.2:87591369-87591388 | MS.gene072850:CDS | 40.0% | |
| TGGACAGTCTTAAACAAAGG+TGG | - | chr3.2:87593062-87593081 | None:intergenic | 40.0% | |
| TGTTCAAGGAATCATCGAAG+GGG | + | chr3.2:87591151-87591170 | MS.gene072850:CDS | 40.0% | |
| TTCCAGCACCATCAATTACT+GGG | - | chr3.2:87592290-87592309 | None:intergenic | 40.0% | |
| TTGCCGATACATTGAGAAGT+TGG | + | chr3.2:87592251-87592270 | MS.gene072850:intron | 40.0% | |
| ! | AACTTCTCAATGTATCGGCA+AGG | - | chr3.2:87592252-87592271 | None:intergenic | 40.0% |
| ! | ACTTCTCAATGTATCGGCAA+GGG | - | chr3.2:87592251-87592270 | None:intergenic | 40.0% |
| ! | GAAGGTACAAGAAGCAAACT+GGG | + | chr3.2:87592629-87592648 | MS.gene072850:intron | 40.0% |
| ! | TCCATGGACTAAACTAACCT+TGG | - | chr3.2:87591786-87591805 | None:intergenic | 40.0% |
| ! | TGAAGGTACAAGAAGCAAAC+TGG | + | chr3.2:87592628-87592647 | MS.gene072850:intron | 40.0% |
| ! | TGGACTAATGGTGGTGATAA+TGG | + | chr3.2:87592975-87592994 | MS.gene072850:CDS | 40.0% |
| ! | TTCTGAGTTGGCTAAGAAGA+AGG | + | chr3.2:87591598-87591617 | MS.gene072850:CDS | 40.0% |
| !! | ACCAAGGTTAGTTTAGTCCA+TGG | + | chr3.2:87591782-87591801 | MS.gene072850:intron | 40.0% |
| !! | ACTAATGGTGGTGATAATGG+TGG | + | chr3.2:87592978-87592997 | MS.gene072850:CDS | 40.0% |
| !! | CTAATGGTGGTGATAATGGT+GGG | + | chr3.2:87592979-87592998 | MS.gene072850:CDS | 40.0% |
| !! | TAATGGTGGTGATAATGGTG+GGG | + | chr3.2:87592980-87592999 | MS.gene072850:CDS | 40.0% |
| ACAAAGAAAAAGGAGGCGGA+GGG | + | chr3.2:87592780-87592799 | MS.gene072850:CDS | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | - | chr3.2:87591048-87591067 | None:intergenic | 45.0% | |
| AGGTATAGTTTACCGGTGAG+AGG | - | chr3.2:87590980-87590999 | None:intergenic | 45.0% | |
| AGTTGCAAGGTGAAGTTGAG+AGG | + | chr3.2:87591690-87591709 | MS.gene072850:CDS | 45.0% | |
| GAAACGACTACACAGCTGTA+AGG | + | chr3.2:87592862-87592881 | MS.gene072850:CDS | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | + | chr3.2:87591565-87591584 | MS.gene072850:CDS | 45.0% | |
| GGCTCAAGCTAATTCTGAGT+TGG | + | chr3.2:87591586-87591605 | MS.gene072850:CDS | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | + | chr3.2:87592686-87592705 | MS.gene072850:CDS | 45.0% | |
| TGCTAAGATTAATGCCGAGG+CGG | + | chr3.2:87592923-87592942 | MS.gene072850:CDS | 45.0% | |
| TTTGGGTCAAAAGACGCAGA+TGG | + | chr3.2:87591349-87591368 | MS.gene072850:CDS | 45.0% | |
| ! | AATGGTGGGGGAATAACTGA+AGG | + | chr3.2:87592993-87593012 | MS.gene072850:CDS | 45.0% |
| ! | TGAGTTGGCTAAGAAGAAGG+CGG | + | chr3.2:87591601-87591620 | MS.gene072850:CDS | 45.0% |
| !! | AATGGTGGTGATAATGGTGG+GGG | + | chr3.2:87592981-87593000 | MS.gene072850:CDS | 45.0% |
| !! | GGAATAACTGAAGGTGCCAT+GGG | + | chr3.2:87593002-87593021 | MS.gene072850:CDS | 45.0% |
| !! | TTCCCAGTAATTGATGGTGC+TGG | + | chr3.2:87592285-87592304 | MS.gene072850:intron | 45.0% |
| AAGACAGCGGGGAGAACAAA+AGG | - | chr3.2:87591035-87591054 | None:intergenic | 50.0% | |
| AAGACTGTCCATGAGCAGAC+AGG | + | chr3.2:87593071-87593090 | MS.gene072850:CDS | 50.0% | |
| ATGTTGCCTCCTGCTTGGAT+GGG | + | chr3.2:87593095-87593114 | MS.gene072850:CDS | 50.0% | |
| ATTCTGATGCTTTCGCGACC+CGG | - | chr3.2:87590869-87590888 | None:intergenic | 50.0% | |
| CACAAAGAAAAAGGAGGCGG+AGG | + | chr3.2:87592779-87592798 | MS.gene072850:CDS | 50.0% | |
| CGGAGGGAATTGTGACACTT+GGG | + | chr3.2:87592796-87592815 | MS.gene072850:CDS | 50.0% | |
| CTAAGGGAAGCTGAGTTGCA+AGG | + | chr3.2:87591677-87591696 | MS.gene072850:CDS | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | - | chr3.2:87591068-87591087 | None:intergenic | 50.0% | |
| GAAAACCTCCTCCATCGTCA+TGG | - | chr3.2:87591198-87591217 | None:intergenic | 50.0% | |
| GACCAATTGTGAAGACAGCG+GGG | - | chr3.2:87591046-87591065 | None:intergenic | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | - | chr3.2:87591047-87591066 | None:intergenic | 50.0% | |
| GTGACACTTGGGAATGCTCA+AGG | + | chr3.2:87592807-87592826 | MS.gene072850:CDS | 50.0% | |
| GTTATTGCGATGCAGAGAGC+TGG | + | chr3.2:87591491-87591510 | MS.gene072850:CDS | 50.0% | |
| TGATTGGAGTGGCGATCATG+CGG | - | chr3.2:87591119-87591138 | None:intergenic | 50.0% | |
| ! | ACGATGGAGGAGGTTTTCAG+AGG | + | chr3.2:87591200-87591219 | MS.gene072850:CDS | 50.0% |
| ! | GGCAGAAGCACAGAAAGCAT+CGG | + | chr3.2:87592707-87592726 | MS.gene072850:CDS | 50.0% |
| !! | AAAGAAGGCCGTGGCTCTAA+GGG | + | chr3.2:87591661-87591680 | MS.gene072850:CDS | 50.0% |
| !! | GGGAATAACTGAAGGTGCCA+TGG | + | chr3.2:87593001-87593020 | MS.gene072850:CDS | 50.0% |
| AAGACGGTGCAGGATTGACC+GGG | - | chr3.2:87590954-87590973 | None:intergenic | 55.0% | |
| AAGGATCCCATCCAAGCAGG+AGG | - | chr3.2:87593104-87593123 | None:intergenic | 55.0% | |
| ACTCGCTGCTTCCATGACGA+TGG | + | chr3.2:87591184-87591203 | MS.gene072850:CDS | 55.0% | |
| ATTAATGCCGAGGCGGTACG+CGG | + | chr3.2:87592930-87592949 | MS.gene072850:CDS | 55.0% | |
| CAAGACGGTGCAGGATTGAC+CGG | - | chr3.2:87590955-87590974 | None:intergenic | 55.0% | |
| CATGTTGCCTCCTGCTTGGA+TGG | + | chr3.2:87593094-87593113 | MS.gene072850:CDS | 55.0% | |
| CTCAGCTTCCCTTAGAGCCA+CGG | - | chr3.2:87591672-87591691 | None:intergenic | 55.0% | |
| CTCCCCGCTGTCTTCACAAT+TGG | + | chr3.2:87591041-87591060 | MS.gene072850:CDS | 55.0% | |
| GCAACATGCCTGTCTGCTCA+TGG | - | chr3.2:87593082-87593101 | None:intergenic | 55.0% | |
| GCGGAGGGAATTGTGACACT+TGG | + | chr3.2:87592795-87592814 | MS.gene072850:CDS | 55.0% | |
| GGCTGAAGTCGAGGCAAAGA+AGG | + | chr3.2:87591646-87591665 | MS.gene072850:CDS | 55.0% | |
| GGTAAGGATCCCATCCAAGC+AGG | - | chr3.2:87593107-87593126 | None:intergenic | 55.0% | |
| TACCGGTGAGAGGTCCAAGA+CGG | - | chr3.2:87590970-87590989 | None:intergenic | 55.0% | |
| TGCTTCCATGACGATGGAGG+AGG | + | chr3.2:87591190-87591209 | MS.gene072850:CDS | 55.0% | |
| TGGCTAAGAAGAAGGCGGCT+TGG | + | chr3.2:87591606-87591625 | MS.gene072850:CDS | 55.0% | |
| ! | AAGCAATTGGTGGACGTGCC+CGG | + | chr3.2:87591308-87591327 | MS.gene072850:CDS | 55.0% |
| ! | CAAAGAAGGCCGTGGCTCTA+AGG | + | chr3.2:87591660-87591679 | MS.gene072850:CDS | 55.0% |
| ! | GAAGAAGGCGGCTTGGACTA+AGG | + | chr3.2:87591613-87591632 | MS.gene072850:CDS | 55.0% |
| ! | GGCAAGGGCCTCTGACTTTT+GGG | - | chr3.2:87592236-87592255 | None:intergenic | 55.0% |
| ! | TGGTCCTCGTGTTGACGATC+AGG | + | chr3.2:87591061-87591080 | MS.gene072850:CDS | 55.0% |
| AGCTGGAGAGGGTGAGAAGG+AGG | + | chr3.2:87591508-87591527 | MS.gene072850:CDS | 60.0% | |
| AGTCGAGGCAAAGAAGGCCG+TGG | + | chr3.2:87591652-87591671 | MS.gene072850:CDS | 60.0% | |
| CACCGTCTTGGACCTCTCAC+CGG | + | chr3.2:87590965-87590984 | MS.gene072850:CDS | 60.0% | |
| CAGGCATGTTGCCTCCTGCT+TGG | + | chr3.2:87593090-87593109 | MS.gene072850:CDS | 60.0% | |
| CGCTGCTTCCATGACGATGG+AGG | + | chr3.2:87591187-87591206 | MS.gene072850:CDS | 60.0% | |
| CGGTCAATCCTGCACCGTCT+TGG | + | chr3.2:87590953-87590972 | MS.gene072850:CDS | 60.0% | |
| GAGAGCTGGAGAGGGTGAGA+AGG | + | chr3.2:87591505-87591524 | MS.gene072850:CDS | 60.0% | |
| GCGATGCAGAGAGCTGGAGA+GGG | + | chr3.2:87591497-87591516 | MS.gene072850:CDS | 60.0% | |
| GCTGGAGAGGGTGAGAAGGA+GGG | + | chr3.2:87591509-87591528 | MS.gene072850:CDS | 60.0% | |
| TGAGAGGTCCAAGACGGTGC+AGG | - | chr3.2:87590964-87590983 | None:intergenic | 60.0% | |
| TGCGATGCAGAGAGCTGGAG+AGG | + | chr3.2:87591496-87591515 | MS.gene072850:CDS | 60.0% | |
| TTGGACTAAGGCGGCTCAGG+TGG | + | chr3.2:87591625-87591644 | MS.gene072850:CDS | 60.0% | |
| ! | CGGCAAGGGCCTCTGACTTT+TGG | - | chr3.2:87592237-87592256 | None:intergenic | 60.0% |
| ! | GAAGGCGGCTTGGACTAAGG+CGG | + | chr3.2:87591616-87591635 | MS.gene072850:CDS | 60.0% |
| CTCAAGTCCGCGTACCGCCT+CGG | - | chr3.2:87592940-87592959 | None:intergenic | 65.0% | |
| GGCTCAGGTGGCTGAAGTCG+AGG | + | chr3.2:87591637-87591656 | MS.gene072850:CDS | 65.0% | |
| GGCTTGGACTAAGGCGGCTC+AGG | + | chr3.2:87591622-87591641 | MS.gene072850:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 87590855 | 87593142 | 87590855 | ID=MS.gene072850 |
| chr3.2 | mRNA | 87590855 | 87593142 | 87590855 | ID=MS.gene072850.t1;Parent=MS.gene072850 |
| chr3.2 | exon | 87590855 | 87591787 | 87590855 | ID=MS.gene072850.t1.exon1;Parent=MS.gene072850.t1 |
| chr3.2 | CDS | 87590855 | 87591787 | 87590855 | ID=cds.MS.gene072850.t1;Parent=MS.gene072850.t1 |
| chr3.2 | exon | 87592633 | 87593142 | 87592633 | ID=MS.gene072850.t1.exon2;Parent=MS.gene072850.t1 |
| chr3.2 | CDS | 87592633 | 87593142 | 87592633 | ID=cds.MS.gene072850.t1;Parent=MS.gene072850.t1 |
| Gene Sequence |
| Protein sequence |
