AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93111

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93111.t1 MTR_1g073400 96.025 478 15 1 1 478 1 474 0.0 932
MS.gene93111.t1 MTR_3g106480 92.050 478 38 0 1 478 1 478 0.0 905
MS.gene93111.t1 MTR_1g115145 94.990 479 17 3 1 478 1 473 0.0 893
MS.gene93111.t1 MTR_1g071130 90.795 478 15 2 1 478 1 449 0.0 879
MS.gene93111.t1 MTR_3g106485 92.259 478 33 1 1 478 1 474 0.0 874
MS.gene93111.t1 MTR_3g106420 91.423 478 41 0 1 478 3 480 0.0 870
MS.gene93111.t1 MTR_1g083190 88.912 478 45 1 1 478 3 472 0.0 835
MS.gene93111.t1 MTR_3g106430 91.195 477 38 1 1 477 1 473 0.0 835
MS.gene93111.t1 MTR_3g106470 81.132 477 34 2 1 477 32 452 0.0 739
MS.gene93111.t1 MTR_8g063830 80.430 465 50 5 1 464 1 425 0.0 672
MS.gene93111.t1 MTR_3g065540 65.217 115 13 1 40 154 14 101 5.86e-41 142
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93111.t1 AT5G25260 74.895 474 107 2 1 474 1 462 0.0 734
MS.gene93111.t1 AT5G25250 74.841 473 105 2 1 473 1 459 0.0 726
MS.gene93111.t1 AT5G64870 71.398 472 124 1 2 473 3 463 0.0 658

Find 113 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAATATTTCTCATATTT+AGG 0.103276 1.1:-80602946 MS.gene93111:CDS
TTGAACCTAAGATTAGTATT+TGG 0.251111 1.1:-80601923 MS.gene93111:CDS
CTGCTAAAGCTGTGGCTCTA+AGG 0.272737 1.1:-80602618 MS.gene93111:CDS
CAAAATAGTCGAAGGTTCTA+TGG 0.275996 1.1:-80601877 MS.gene93111:CDS
AGGGATTACTTGATGATAAA+TGG 0.295084 1.1:-80601996 MS.gene93111:CDS
GTGAAGTTGGTTCGAAATCT+AGG 0.296293 1.1:-80602858 MS.gene93111:CDS
ATGAATATTTCTCATATTTA+GGG 0.304701 1.1:-80602945 MS.gene93111:CDS
TTAGTCCAAATACTAATCTT+AGG 0.318195 1.1:+80601918 None:intergenic
ACAAGGAGGGATTTAGAGTT+AGG 0.330276 1.1:-80602756 MS.gene93111:CDS
TGTAGGTACAAGAGGCTAAC+TGG 0.334134 1.1:-80602250 MS.gene93111:intron
CATGTTGCCTCCTGCTTGGA+TGG 0.342126 1.1:-80601784 MS.gene93111:CDS
CAACTCGAGTTGAATCAATT+CGG 0.347216 1.1:-80603018 MS.gene93111:CDS
GAAACGACTACACAGCTCTA+AGG 0.361629 1.1:-80602016 MS.gene93111:CDS
AAGATTAGTATTTGGACTAA+TGG 0.361897 1.1:-80601915 MS.gene93111:CDS
CAATGCGAATGTTAAGCAAT+TGG 0.388576 1.1:-80602983 MS.gene93111:CDS
AAGTTTGATGTCTTCGATTC+CGG 0.389998 1.1:+80603371 None:intergenic
GATGTCTTCGATTCCGGCTC+CGG 0.392612 1.1:+80603377 None:intergenic
ATCAAAATCCAACAATGTAC+AGG 0.419506 1.1:-80603431 None:intergenic
AAGCAATTGGTGGATGTGCC+TGG 0.422566 1.1:-80602970 MS.gene93111:CDS
CTTCCTGCGGTCTTCACAAT+CGG 0.430548 1.1:-80603237 MS.gene93111:CDS
CGTATTTGAGGAGGCTTTCG+TGG 0.435533 1.1:+80603199 None:intergenic
TCCGAGTACCTGGTGATAAC+CGG 0.437519 1.1:-80603396 MS.gene93111:CDS
AACTCGAGTTGAATCAATTC+GGG 0.439303 1.1:-80603017 MS.gene93111:CDS
GAAGAAAGCGGCTTGGACTA+AGG 0.439534 1.1:-80602665 MS.gene93111:CDS
TCAAACTTGCAAAGAAATCA+TGG 0.455886 1.1:-80603356 MS.gene93111:CDS
AGCAATTCTGTACGAGAAGA+AGG 0.472126 1.1:-80602198 MS.gene93111:CDS
AAATCAGTTTAGCGTATTTG+AGG 0.473661 1.1:+80603187 None:intergenic
TTTAGGGCAAAAGACGCAAA+TGG 0.491891 1.1:-80602929 MS.gene93111:CDS
AAGACTGTCCATGAGCAAAC+AGG 0.492575 1.1:-80601807 MS.gene93111:CDS
TCCTTTGAAAACCTCTTCCA+TGG 0.499133 1.1:+80603077 None:intergenic
TGGAAGCAGCGAATCAAGCT+AGG 0.499263 1.1:-80602909 MS.gene93111:CDS
CGAAAGTTATTGCGATGCAG+AGG 0.499935 1.1:-80602792 MS.gene93111:CDS
TGCTAAAGCTGTGGCTCTAA+GGG 0.501192 1.1:-80602617 MS.gene93111:CDS
CAGGCATGTTGCCTCCTGCT+TGG 0.503335 1.1:-80601788 MS.gene93111:CDS
TGCTTCGATGACCATGGAAG+AGG 0.508530 1.1:-80603088 MS.gene93111:CDS
AGCAAAAGCATCCGAGTACC+TGG 0.509436 1.1:-80603406 MS.gene93111:CDS
GCTAAGATGAAAGGTGAAGT+TGG 0.511842 1.1:-80602871 MS.gene93111:CDS
GTTATTGCGATGCAGAGGGC+TGG 0.513050 1.1:-80602787 MS.gene93111:CDS
TAGAGTTAGGACTGAAGTGA+AGG 0.517399 1.1:-80602743 MS.gene93111:CDS
GCAACATGCCTGTTTGCTCA+TGG 0.521020 1.1:+80601799 None:intergenic
ATGTTGCCTCCTGCTTGGAT+GGG 0.522936 1.1:-80601783 MS.gene93111:CDS
CTCGTTCAAGGAATCATTGA+AGG 0.526317 1.1:-80603129 MS.gene93111:CDS
ATGGGTATGAAAGAGGTTGC+TGG 0.526365 1.1:-80601858 MS.gene93111:CDS
GCAGAGGGGATCGTGACACT+TGG 0.529940 1.1:-80602083 MS.gene93111:CDS
ATTAGTATTTGGACTAATGG+AGG 0.534214 1.1:-80601912 MS.gene93111:CDS
CACGTCAAGGAACTCGTTCA+AGG 0.535434 1.1:-80603141 MS.gene93111:CDS
TGGTGGCATGTTTCAAGAGA+TGG 0.539247 1.1:-80601976 MS.gene93111:CDS
TCCGGTTATCACCAGGTACT+CGG 0.539596 1.1:+80603395 None:intergenic
TGCTCAAGTGGCTGAAGTTG+AGG 0.540016 1.1:-80602641 MS.gene93111:CDS
GGCTGAGGCTAATTCTGAGT+TGG 0.544080 1.1:-80602692 MS.gene93111:CDS
CTTGAACGAGTTCCTTGACG+TGG 0.546546 1.1:+80603142 None:intergenic
TATGAGAAATATTCATGCCC+AGG 0.547602 1.1:+80602952 None:intergenic
CACCGTCTTCGACCTCTCAC+CGG 0.548854 1.1:-80603313 MS.gene93111:CDS
GATAAGGTTCCCATCCAAGC+AGG 0.550974 1.1:+80601774 None:intergenic
TTGGACTAAGGCTGCTCAAG+TGG 0.551989 1.1:-80602653 MS.gene93111:CDS
TTCCGGCTCCGGTTATCACC+AGG 0.552313 1.1:+80603388 None:intergenic
ACTTCGAAGGTGTAGTTCAC+CGG 0.556605 1.1:+80603294 None:intergenic
AAAATAGTCGAAGGTTCTAT+GGG 0.558316 1.1:-80601876 MS.gene93111:CDS
AAGAGAGGCTGAAGTGGCTG+AGG 0.558698 1.1:-80602707 MS.gene93111:CDS
TGCGAATGTTAAGCAATTGG+TGG 0.563120 1.1:-80602980 MS.gene93111:CDS
GTAGGTACAAGAGGCTAACT+GGG 0.564807 1.1:-80602249 MS.gene93111:intron
AGGTTCTATGGGTATGAAAG+AGG 0.567548 1.1:-80601865 MS.gene93111:CDS
TACCTGGTGATAACCGGAGC+CGG 0.568923 1.1:-80603390 MS.gene93111:CDS
AGTACACTTCTCAATGCACT+TGG 0.570595 1.1:-80602038 MS.gene93111:CDS
CCTCGCTGCTTCGATGACCA+TGG 0.570615 1.1:-80603094 MS.gene93111:CDS
CTGGATGGTGTAGGTACAAG+AGG 0.571024 1.1:-80602258 MS.gene93111:intron
TGAAGTTGGTTCGAAATCTA+GGG 0.572755 1.1:-80602857 MS.gene93111:CDS
AAGACGGTGCAAGATTGACC+AGG 0.574032 1.1:+80603327 None:intergenic
AGCAATTGGTGGATGTGCCT+GGG 0.578490 1.1:-80602969 MS.gene93111:CDS
GGCAGAAGCACAGAAAGCAT+TGG 0.582553 1.1:-80602171 MS.gene93111:CDS
TGGCGAAGAAGAAAGCGGCT+TGG 0.584288 1.1:-80602672 MS.gene93111:CDS
ACTCATGGCTTGAACTTCGA+AGG 0.586153 1.1:+80603281 None:intergenic
ACTGCCTTTCGTTCTTCCTG+CGG 0.586208 1.1:-80603250 MS.gene93111:CDS
TCAGTTTAGCGTATTTGAGG+AGG 0.587438 1.1:+80603190 None:intergenic
GAATCAAAGAGAGGCTGAAG+TGG 0.589954 1.1:-80602713 MS.gene93111:CDS
GGTTCGAGAGTTTATCATGA+GGG 0.591190 1.1:+80603163 None:intergenic
GGACCGATTGTGAAGACCGC+AGG 0.592140 1.1:+80603234 None:intergenic
AAACGACTACACAGCTCTAA+GGG 0.592700 1.1:-80602015 MS.gene93111:CDS
TCTGTACGAGAAGAAGGCAG+AGG 0.600808 1.1:-80602192 MS.gene93111:CDS
TGGACTAATGGAGGTGACAA+TGG 0.609237 1.1:-80601903 MS.gene93111:CDS
GCTGGAGAGAGTGACAAGGA+GGG 0.609527 1.1:-80602769 MS.gene93111:CDS
AGTTGCAAGGTGAGGTTGAG+AGG 0.610701 1.1:-80602588 MS.gene93111:CDS
GTGACACTTGGAAATGCTCA+AGG 0.613316 1.1:-80602071 MS.gene93111:CDS
CTAAGGGAAGCTGAGTTGCA+AGG 0.613783 1.1:-80602601 MS.gene93111:CDS
GAATCAAGCTAGGGTTGATG+TGG 0.625479 1.1:-80602899 MS.gene93111:CDS
GGCTGGAGAGAGTGACAAGG+AGG 0.627665 1.1:-80602770 MS.gene93111:CDS
CACCGGTGAGAGGTCGAAGA+CGG 0.628279 1.1:+80603311 None:intergenic
GGAAGCAGCGAATCAAGCTA+GGG 0.630802 1.1:-80602908 MS.gene93111:CDS
GAAAGTTATTGCGATGCAGA+GGG 0.631337 1.1:-80602791 MS.gene93111:CDS
GTTCGAGAGTTTATCATGAG+GGG 0.631767 1.1:+80603164 None:intergenic
CTTTCGTGGTCGTCAGCACG+AGG 0.632885 1.1:+80603213 None:intergenic
AGGTGTAGTTCACCGGTGAG+AGG 0.633284 1.1:+80603301 None:intergenic
GATGGCTAAGATTAATGCTG+AGG 0.642407 1.1:-80601958 MS.gene93111:CDS
AAGACCGCAGGAAGAACGAA+AGG 0.642924 1.1:+80603246 None:intergenic
AATGGAGGCAAAATAGTCGA+AGG 0.643742 1.1:-80601885 MS.gene93111:CDS
GAGGGCTGGAGAGAGTGACA+AGG 0.646522 1.1:-80602773 MS.gene93111:CDS
TCAAAATCCAACAATGTACA+GGG 0.647397 1.1:-80603430 None:intergenic
GGAAGCTGAGTTGCAAGGTG+AGG 0.648282 1.1:-80602596 MS.gene93111:CDS
TAGTGTTCAATATGAAACCA+AGG 0.651992 1.1:-80602512 MS.gene93111:intron
TGAGTTGGCGAAGAAGAAAG+CGG 0.653130 1.1:-80602677 MS.gene93111:CDS
TGGACAGTCTTAAACAGAGG+TGG 0.656626 1.1:+80601819 None:intergenic
ATTAATGCTGAGGCAGTACG+TGG 0.657117 1.1:-80601948 MS.gene93111:CDS
GATTACTTGATGATAAATGG+TGG 0.658453 1.1:-80601993 MS.gene93111:CDS
TCATGGACAGTCTTAAACAG+AGG 0.660499 1.1:+80601816 None:intergenic
AAGGTTCCCATCCAAGCAGG+AGG 0.669932 1.1:+80601777 None:intergenic
GTTGGTTCGAAATCTAGGGA+AGG 0.671440 1.1:-80602853 MS.gene93111:CDS
TAAACTCTCGAACCACGTCA+AGG 0.672629 1.1:-80603154 MS.gene93111:CDS
GTGGCAGAAGCTAAGATGAA+AGG 0.672668 1.1:-80602880 MS.gene93111:CDS
TGGTTCGAGAGTTTATCATG+AGG 0.674541 1.1:+80603162 None:intergenic
ACTAATGGAGGTGACAATGG+AGG 0.677352 1.1:-80601900 MS.gene93111:CDS
AGTTGAGGCTGCTAAAGCTG+TGG 0.689875 1.1:-80602626 MS.gene93111:CDS
AGACGGTGCAAGATTGACCA+GGG 0.716272 1.1:+80603328 None:intergenic
CCATGGTCATCGAAGCAGCG+AGG 0.728643 1.1:+80603094 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAATATTTCTCATATTTA+GGG - chr1.1:80602230-80602249 MS.gene93111:CDS 15.0%
!!! AATGTTTATTTTTTAAGTAC+TGG - chr1.1:80602886-80602905 MS.gene93111:CDS 15.0%
!!! ATTAATACTTCAATATCTTT+TGG - chr1.1:80602771-80602790 MS.gene93111:CDS 15.0%
!! CATGAATATTTCTCATATTT+AGG - chr1.1:80602229-80602248 MS.gene93111:CDS 20.0%
!! GATTATTGTTTAATATTGCA+TGG - chr1.1:80602843-80602862 MS.gene93111:CDS 20.0%
!!! TTTATTTTTTAAGTACTGGT+TGG - chr1.1:80602890-80602909 MS.gene93111:CDS 20.0%
! AAGATTAGTATTTGGACTAA+TGG - chr1.1:80603260-80603279 MS.gene93111:CDS 25.0%
! TTAGTCCAAATACTAATCTT+AGG + chr1.1:80603260-80603279 None:intergenic 25.0%
! TTGAACCTAAGATTAGTATT+TGG - chr1.1:80603252-80603271 MS.gene93111:CDS 25.0%
AAAATAGTCGAAGGTTCTAT+GGG - chr1.1:80603299-80603318 MS.gene93111:CDS 30.0%
AAATCAGTTTAGCGTATTTG+AGG + chr1.1:80601991-80602010 None:intergenic 30.0%
ATTAGTATTTGGACTAATGG+AGG - chr1.1:80603263-80603282 MS.gene93111:CDS 30.0%
TAGTGTTCAATATGAAACCA+AGG - chr1.1:80602663-80602682 MS.gene93111:CDS 30.0%
TCAAACTTGCAAAGAAATCA+TGG - chr1.1:80601819-80601838 MS.gene93111:CDS 30.0%
TGAAAGGAGTTATATTTGCA+TGG + chr1.1:80602699-80602718 None:intergenic 30.0%
! AGGGATTACTTGATGATAAA+TGG - chr1.1:80603179-80603198 MS.gene93111:CDS 30.0%
! GATTACTTGATGATAAATGG+TGG - chr1.1:80603182-80603201 MS.gene93111:CDS 30.0%
! GTTTAATATTGCATGGACTA+TGG - chr1.1:80602850-80602869 MS.gene93111:CDS 30.0%
! TCACTGTAGTTAAAGCTTTT+TGG - chr1.1:80602805-80602824 MS.gene93111:CDS 30.0%
!! TTAAAGCTTTTTGGCATACA+TGG - chr1.1:80602814-80602833 MS.gene93111:CDS 30.0%
AAGTTTGATGTCTTCGATTC+CGG + chr1.1:80601807-80601826 None:intergenic 35.0%
CAAAATAGTCGAAGGTTCTA+TGG - chr1.1:80603298-80603317 MS.gene93111:CDS 35.0%
CAATGCGAATGTTAAGCAAT+TGG - chr1.1:80602192-80602211 MS.gene93111:CDS 35.0%
GCTATACGCAAAGAAAAAAG+AGG - chr1.1:80603070-80603089 MS.gene93111:CDS 35.0%
TATGAGAAATATTCATGCCC+AGG + chr1.1:80602226-80602245 None:intergenic 35.0%
! AAGAAATCATGGATTTTCCC+TGG - chr1.1:80601830-80601849 MS.gene93111:CDS 35.0%
! TTAAGAGCTTTTGTCGGATA+AGG + chr1.1:80603420-80603439 None:intergenic 35.0%
!! AACTCGAGTTGAATCAATTC+GGG - chr1.1:80602158-80602177 MS.gene93111:CDS 35.0%
!! CAACTCGAGTTGAATCAATT+CGG - chr1.1:80602157-80602176 MS.gene93111:CDS 35.0%
!! GGTTTTTGAGAATCAAAGAG+AGG - chr1.1:80602453-80602472 MS.gene93111:intron 35.0%
!! TGAAGTTGGTTCGAAATCTA+GGG - chr1.1:80602318-80602337 MS.gene93111:intron 35.0%
!! TTAAGTACTGGTTGGAATTC+TGG - chr1.1:80602898-80602917 MS.gene93111:CDS 35.0%
AATGGAGGCAAAATAGTCGA+AGG - chr1.1:80603290-80603309 MS.gene93111:CDS 40.0%
AGCAATTCTGTACGAGAAGA+AGG - chr1.1:80602977-80602996 MS.gene93111:CDS 40.0%
AGGTTCTATGGGTATGAAAG+AGG - chr1.1:80603310-80603329 MS.gene93111:CDS 40.0%
AGTACACTTCTCAATGCACT+TGG - chr1.1:80603137-80603156 MS.gene93111:CDS 40.0%
CAAAGAAAAAAGAGGCAGAG+GGG - chr1.1:80603078-80603097 MS.gene93111:CDS 40.0%
CTCGTTCAAGGAATCATTGA+AGG - chr1.1:80602046-80602065 MS.gene93111:CDS 40.0%
GAAAGTTATTGCGATGCAGA+GGG - chr1.1:80602384-80602403 MS.gene93111:intron 40.0%
GATGGCTAAGATTAATGCTG+AGG - chr1.1:80603217-80603236 MS.gene93111:CDS 40.0%
GCAAAGAAAAAAGAGGCAGA+GGG - chr1.1:80603077-80603096 MS.gene93111:CDS 40.0%
GCTAAGATGAAAGGTGAAGT+TGG - chr1.1:80602304-80602323 MS.gene93111:intron 40.0%
GGTTCGAGAGTTTATCATGA+GGG + chr1.1:80602015-80602034 None:intergenic 40.0%
GTTCGAGAGTTTATCATGAG+GGG + chr1.1:80602014-80602033 None:intergenic 40.0%
TAGAGTTAGGACTGAAGTGA+AGG - chr1.1:80602432-80602451 MS.gene93111:intron 40.0%
TCAGTTTAGCGTATTTGAGG+AGG + chr1.1:80601988-80602007 None:intergenic 40.0%
TCATGGACAGTCTTAAACAG+AGG + chr1.1:80603362-80603381 None:intergenic 40.0%
TGCGAATGTTAAGCAATTGG+TGG - chr1.1:80602195-80602214 MS.gene93111:CDS 40.0%
TGGTTCGAGAGTTTATCATG+AGG + chr1.1:80602016-80602035 None:intergenic 40.0%
! AAACGACTACACAGCTCTAA+GGG - chr1.1:80603160-80603179 MS.gene93111:CDS 40.0%
! ACAAGGAGGGATTTAGAGTT+AGG - chr1.1:80602419-80602438 MS.gene93111:intron 40.0%
! ACCATGGAAGAGGTTTTCAA+AGG - chr1.1:80602097-80602116 MS.gene93111:CDS 40.0%
! TCCTTTGAAAACCTCTTCCA+TGG + chr1.1:80602101-80602120 None:intergenic 40.0%
! TGCATGGACTAAACTAACCT+TGG + chr1.1:80602683-80602702 None:intergenic 40.0%
! TTTAGGGCAAAAGACGCAAA+TGG - chr1.1:80602246-80602265 MS.gene93111:CDS 40.0%
!! GTGAAGTTGGTTCGAAATCT+AGG - chr1.1:80602317-80602336 MS.gene93111:intron 40.0%
AAGACTGTCCATGAGCAAAC+AGG - chr1.1:80603368-80603387 MS.gene93111:CDS 45.0%
ACTAATGGAGGTGACAATGG+AGG - chr1.1:80603275-80603294 MS.gene93111:CDS 45.0%
ACTCATGGCTTGAACTTCGA+AGG + chr1.1:80601897-80601916 None:intergenic 45.0%
ATGGGTATGAAAGAGGTTGC+TGG - chr1.1:80603317-80603336 MS.gene93111:CDS 45.0%
ATTAATGCTGAGGCAGTACG+TGG - chr1.1:80603227-80603246 MS.gene93111:CDS 45.0%
CGAAAGTTATTGCGATGCAG+AGG - chr1.1:80602383-80602402 MS.gene93111:intron 45.0%
CGCAAAGAAAAAAGAGGCAG+AGG - chr1.1:80603076-80603095 MS.gene93111:CDS 45.0%
GAAACGACTACACAGCTCTA+AGG - chr1.1:80603159-80603178 MS.gene93111:CDS 45.0%
GAATCAAAGAGAGGCTGAAG+TGG - chr1.1:80602462-80602481 MS.gene93111:intron 45.0%
GTAGGTACAAGAGGCTAACT+GGG - chr1.1:80602926-80602945 MS.gene93111:CDS 45.0%
GTGACACTTGGAAATGCTCA+AGG - chr1.1:80603104-80603123 MS.gene93111:CDS 45.0%
GTGGCAGAAGCTAAGATGAA+AGG - chr1.1:80602295-80602314 MS.gene93111:intron 45.0%
GTTGGAATTCTGGATGGTGT+AGG - chr1.1:80602908-80602927 MS.gene93111:CDS 45.0%
TAAACTCTCGAACCACGTCA+AGG - chr1.1:80602021-80602040 MS.gene93111:CDS 45.0%
TGGACAGTCTTAAACAGAGG+TGG + chr1.1:80603359-80603378 None:intergenic 45.0%
TGGACTAATGGAGGTGACAA+TGG - chr1.1:80603272-80603291 MS.gene93111:CDS 45.0%
TGGTGGCATGTTTCAAGAGA+TGG - chr1.1:80603199-80603218 MS.gene93111:CDS 45.0%
TGTAGGTACAAGAGGCTAAC+TGG - chr1.1:80602925-80602944 MS.gene93111:CDS 45.0%
! ACTTCGAAGGTGTAGTTCAC+CGG + chr1.1:80601884-80601903 None:intergenic 45.0%
! ATTTTATGCGCGCAAGCAAG+TGG - chr1.1:80603037-80603056 MS.gene93111:CDS 45.0%
! TGAGTTGGCGAAGAAGAAAG+CGG - chr1.1:80602498-80602517 MS.gene93111:intron 45.0%
!! AGGCAGTTTTTCAGCACTCA+TGG + chr1.1:80601912-80601931 None:intergenic 45.0%
!! GAATCAAGCTAGGGTTGATG+TGG - chr1.1:80602276-80602295 MS.gene93111:intron 45.0%
!! GTACTGGTTGGAATTCTGGA+TGG - chr1.1:80602902-80602921 MS.gene93111:CDS 45.0%
!! GTTGGTTCGAAATCTAGGGA+AGG - chr1.1:80602322-80602341 MS.gene93111:intron 45.0%
!! TGCTAAAGCTGTGGCTCTAA+GGG - chr1.1:80602558-80602577 MS.gene93111:CDS 45.0%
!! ATAATAAATAAATAAATGAA+AGG + chr1.1:80602715-80602734 None:intergenic 5.0%
AAGACCGCAGGAAGAACGAA+AGG + chr1.1:80601932-80601951 None:intergenic 50.0%
AAGACGGTGCAAGATTGACC+AGG + chr1.1:80601851-80601870 None:intergenic 50.0%
ACTGCCTTTCGTTCTTCCTG+CGG - chr1.1:80601925-80601944 MS.gene93111:CDS 50.0%
AGACGGTGCAAGATTGACCA+GGG + chr1.1:80601850-80601869 None:intergenic 50.0%
AGTTGAGGCTGCTAAAGCTG+TGG - chr1.1:80602549-80602568 MS.gene93111:CDS 50.0%
AGTTGCAAGGTGAGGTTGAG+AGG - chr1.1:80602587-80602606 MS.gene93111:CDS 50.0%
ATGTTGCCTCCTGCTTGGAT+GGG - chr1.1:80603392-80603411 MS.gene93111:CDS 50.0%
CACGTCAAGGAACTCGTTCA+AGG - chr1.1:80602034-80602053 MS.gene93111:CDS 50.0%
CGTATTTGAGGAGGCTTTCG+TGG + chr1.1:80601979-80601998 None:intergenic 50.0%
CTAAGGGAAGCTGAGTTGCA+AGG - chr1.1:80602574-80602593 MS.gene93111:CDS 50.0%
CTGGATGGTGTAGGTACAAG+AGG - chr1.1:80602917-80602936 MS.gene93111:CDS 50.0%
CTTCCTGCGGTCTTCACAAT+CGG - chr1.1:80601938-80601957 MS.gene93111:CDS 50.0%
CTTGAACGAGTTCCTTGACG+TGG + chr1.1:80602036-80602055 None:intergenic 50.0%
GATAAGGTTCCCATCCAAGC+AGG + chr1.1:80603404-80603423 None:intergenic 50.0%
GCAACATGCCTGTTTGCTCA+TGG + chr1.1:80603379-80603398 None:intergenic 50.0%
GGAAGCAGCGAATCAAGCTA+GGG - chr1.1:80602267-80602286 MS.gene93111:intron 50.0%
GGCTGAGGCTAATTCTGAGT+TGG - chr1.1:80602483-80602502 MS.gene93111:intron 50.0%
TCCGAGTACCTGGTGATAAC+CGG - chr1.1:80601779-80601798 MS.gene93111:CDS 50.0%
TCCGGTTATCACCAGGTACT+CGG + chr1.1:80601783-80601802 None:intergenic 50.0%
TCTGTACGAGAAGAAGGCAG+AGG - chr1.1:80602983-80603002 MS.gene93111:CDS 50.0%
TGCTCAAGTGGCTGAAGTTG+AGG - chr1.1:80602534-80602553 MS.gene93111:CDS 50.0%
TGCTTCGATGACCATGGAAG+AGG - chr1.1:80602087-80602106 MS.gene93111:CDS 50.0%
TGGAAGCAGCGAATCAAGCT+AGG - chr1.1:80602266-80602285 MS.gene93111:intron 50.0%
TTGGACTAAGGCTGCTCAAG+TGG - chr1.1:80602522-80602541 MS.gene93111:CDS 50.0%
! AAGCAATTGGTGGATGTGCC+TGG - chr1.1:80602205-80602224 MS.gene93111:CDS 50.0%
! AGCAATTGGTGGATGTGCCT+GGG - chr1.1:80602206-80602225 MS.gene93111:CDS 50.0%
! CTGCTAAAGCTGTGGCTCTA+AGG - chr1.1:80602557-80602576 MS.gene93111:CDS 50.0%
! GAAGAAAGCGGCTTGGACTA+AGG - chr1.1:80602510-80602529 MS.gene93111:intron 50.0%
! GGCAGAAGCACAGAAAGCAT+TGG - chr1.1:80603004-80603023 MS.gene93111:CDS 50.0%
!! AGCAAAAGCATCCGAGTACC+TGG - chr1.1:80601769-80601788 MS.gene93111:CDS 50.0%
AAGAGAGGCTGAAGTGGCTG+AGG - chr1.1:80602468-80602487 MS.gene93111:intron 55.0%
AAGGTTCCCATCCAAGCAGG+AGG + chr1.1:80603401-80603420 None:intergenic 55.0%
AGGTGTAGTTCACCGGTGAG+AGG + chr1.1:80601877-80601896 None:intergenic 55.0%
CATGTTGCCTCCTGCTTGGA+TGG - chr1.1:80603391-80603410 MS.gene93111:CDS 55.0%
GATGTCTTCGATTCCGGCTC+CGG + chr1.1:80601801-80601820 None:intergenic 55.0%
GCTGGAGAGAGTGACAAGGA+GGG - chr1.1:80602406-80602425 MS.gene93111:intron 55.0%
GGAAGCTGAGTTGCAAGGTG+AGG - chr1.1:80602579-80602598 MS.gene93111:CDS 55.0%
GTTATTGCGATGCAGAGGGC+TGG - chr1.1:80602388-80602407 MS.gene93111:intron 55.0%
TACCTGGTGATAACCGGAGC+CGG - chr1.1:80601785-80601804 MS.gene93111:CDS 55.0%
TGGCGAAGAAGAAAGCGGCT+TGG - chr1.1:80602503-80602522 MS.gene93111:intron 55.0%
CACCGGTGAGAGGTCGAAGA+CGG + chr1.1:80601867-80601886 None:intergenic 60.0%
CACCGTCTTCGACCTCTCAC+CGG - chr1.1:80601862-80601881 MS.gene93111:CDS 60.0%
CAGGCATGTTGCCTCCTGCT+TGG - chr1.1:80603387-80603406 MS.gene93111:CDS 60.0%
CCATGGTCATCGAAGCAGCG+AGG + chr1.1:80602084-80602103 None:intergenic 60.0%
CCTCGCTGCTTCGATGACCA+TGG - chr1.1:80602081-80602100 MS.gene93111:CDS 60.0%
CTTTCGTGGTCGTCAGCACG+AGG + chr1.1:80601965-80601984 None:intergenic 60.0%
GAGGGCTGGAGAGAGTGACA+AGG - chr1.1:80602402-80602421 MS.gene93111:intron 60.0%
GCAGAGGGGATCGTGACACT+TGG - chr1.1:80603092-80603111 MS.gene93111:CDS 60.0%
GGACCGATTGTGAAGACCGC+AGG + chr1.1:80601944-80601963 None:intergenic 60.0%
GGCTGGAGAGAGTGACAAGG+AGG - chr1.1:80602405-80602424 MS.gene93111:intron 60.0%
TTCCGGCTCCGGTTATCACC+AGG + chr1.1:80601790-80601809 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 80601758 80603439 80601758 ID=MS.gene93111
chr1.1 mRNA 80601758 80603439 80601758 ID=MS.gene93111.t1;Parent=MS.gene93111
chr1.1 exon 80602513 80603439 80602513 ID=MS.gene93111.t1.exon1;Parent=MS.gene93111.t1
chr1.1 CDS 80602513 80603439 80602513 ID=cds.MS.gene93111.t1;Parent=MS.gene93111.t1
chr1.1 exon 80601758 80602267 80601758 ID=MS.gene93111.t1.exon2;Parent=MS.gene93111.t1
chr1.1 CDS 80601758 80602267 80601758 ID=cds.MS.gene93111.t1;Parent=MS.gene93111.t1
Gene Sequence

>MS.gene93111

ATGTACAGGGTAGCAAAAGCATCCGAGTACCTGGTGATAACCGGAGCCGGAATCGAAGACATCAAACTTGCAAAGAAATCATGGATTTTCCCTGGTCAATCTTGCACCGTCTTCGACCTCTCACCGGTGAACTACACCTTCGAAGTTCAAGCCATGAGTGCTGAAAAACTGCCTTTCGTTCTTCCTGCGGTCTTCACAATCGGTCCTCGTGCTGACGACCACGAAAGCCTCCTCAAATACGCTAAACTGATTTCCCCTCATGATAAACTCTCGAACCACGTCAAGGAACTCGTTCAAGGAATCATTGAAGGTGAGACACGTGTCCTCGCTGCTTCGATGACCATGGAAGAGGTTTTCAAAGGAACAAAAGAGTTTAAACAAGAAGTATTCGAGAAAGTTCAACTCGAGTTGAATCAATTCGGGTTATTGATTTACAATGCGAATGTTAAGCAATTGGTGGATGTGCCTGGGCATGAATATTTCTCATATTTAGGGCAAAAGACGCAAATGGAAGCAGCGAATCAAGCTAGGGTTGATGTGGCAGAAGCTAAGATGAAAGGTGAAGTTGGTTCGAAATCTAGGGAAGGACAAACACTGCAGAATGCAGCAAAAATTGACGCAGAGACGAAAGTTATTGCGATGCAGAGGGCTGGAGAGAGTGACAAGGAGGGATTTAGAGTTAGGACTGAAGTGAAGGTTTTTGAGAATCAAAGAGAGGCTGAAGTGGCTGAGGCTAATTCTGAGTTGGCGAAGAAGAAAGCGGCTTGGACTAAGGCTGCTCAAGTGGCTGAAGTTGAGGCTGCTAAAGCTGTGGCTCTAAGGGAAGCTGAGTTGCAAGGTGAGGTTGAGAGGATGAATGCTTTGACTACTACTGAGAAGCTTAAAGCTGATTTACTTAGCAAAGCTAGTGTTCAATATGAAACCAAGGTTAGTTTAGTCCATGCAAATATAACTCCTTTCATTTATTTATTTATTATTATTATTATTATTCAAATTGTTTTACTAGCAACAAGATTAATACTTCAATATCTTTTGGTAGAAAATAAGTCACTGTAGTTAAAGCTTTTTGGCATACATGGATGAATGATTATTGTTTAATATTGCATGGACTATGGATGAATGATTTTCAATGTTTATTTTTTAAGTACTGGTTGGAATTCTGGATGGTGTAGGTACAAGAGGCTAACTGGGAATTATACAAGAAACAAAAAGAAGCAGAAGCAATTCTGTACGAGAAGAAGGCAGAGGCAGAAGCACAGAAAGCATTGGCAGATGCAACATTTTATGCGCGCAAGCAAGTGGCTGAAGCAGAGCTATACGCAAAGAAAAAAGAGGCAGAGGGGATCGTGACACTTGGAAATGCTCAAGGAGCGTATGTAAGTACACTTCTCAATGCACTTGGAAACGACTACACAGCTCTAAGGGATTACTTGATGATAAATGGTGGCATGTTTCAAGAGATGGCTAAGATTAATGCTGAGGCAGTACGTGGACTTGAACCTAAGATTAGTATTTGGACTAATGGAGGTGACAATGGAGGCAAAATAGTCGAAGGTTCTATGGGTATGAAAGAGGTTGCTGGTGTTTACAAGATGTTGCCACCTCTGTTTAAGACTGTCCATGAGCAAACAGGCATGTTGCCTCCTGCTTGGATGGGAACCTTATCCGACAAAAGCTCTTAA
Protein sequence

>MS.gene93111.t1

MYRVAKASEYLVITGAGIEDIKLAKKSWIFPGQSCTVFDLSPVNYTFEVQAMSAEKLPFVLPAVFTIGPRADDHESLLKYAKLISPHDKLSNHVKELVQGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANVKQLVDVPGHEYFSYLGQKTQMEAANQARVDVAEAKMKGEVGSKSREGQTLQNAAKIDAETKVIAMQRAGESDKEGFRVRTEVKVFENQREAEVAEANSELAKKKAAWTKAAQVAEVEAAKAVALREAELQGEVERMNALTTTEKLKADLLSKASVQYETKVQEANWELYKKQKEAEAILYEKKAEAEAQKALADATFYARKQVAEAELYAKKKEAEGIVTLGNAQGAYVSTLLNALGNDYTALRDYLMINGGMFQEMAKINAEAVRGLEPKISIWTNGGDNGGKIVEGSMGMKEVAGVYKMLPPLFKTVHEQTGMLPPAWMGTLSDKSS