Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44118.t1 | XP_003591134.1 | 87 | 477 | 57 | 1 | 1 | 477 | 1 | 472 | 2.00E-172 | 615.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44118.t1 | D2XNR2 | 87.0 | 477 | 57 | 1 | 1 | 477 | 1 | 472 | 4.9e-175 | 615.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44118.t1 | G7I8N5 | 87.0 | 477 | 57 | 1 | 1 | 477 | 1 | 472 | 1.5e-172 | 615.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056054 | MS.gene44118 | 0.846589 | 1.98E-59 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44118.t1 | MTR_1g083190 | 96.436 | 477 | 12 | 1 | 1 | 477 | 1 | 472 | 0.0 | 923 |
| MS.gene44118.t1 | MTR_3g106420 | 93.750 | 480 | 27 | 1 | 1 | 477 | 1 | 480 | 0.0 | 884 |
| MS.gene44118.t1 | MTR_3g106480 | 90.167 | 478 | 44 | 1 | 3 | 477 | 1 | 478 | 0.0 | 871 |
| MS.gene44118.t1 | MTR_3g106485 | 90.947 | 475 | 42 | 1 | 3 | 477 | 1 | 474 | 0.0 | 845 |
| MS.gene44118.t1 | MTR_3g106430 | 91.983 | 474 | 37 | 1 | 3 | 476 | 1 | 473 | 0.0 | 828 |
| MS.gene44118.t1 | MTR_1g073400 | 89.053 | 475 | 51 | 1 | 3 | 477 | 1 | 474 | 0.0 | 814 |
| MS.gene44118.t1 | MTR_1g071130 | 83.579 | 475 | 52 | 1 | 3 | 477 | 1 | 449 | 0.0 | 806 |
| MS.gene44118.t1 | MTR_1g115145 | 86.458 | 480 | 53 | 5 | 3 | 477 | 1 | 473 | 0.0 | 805 |
| MS.gene44118.t1 | MTR_3g106470 | 82.600 | 477 | 24 | 3 | 3 | 476 | 32 | 452 | 0.0 | 740 |
| MS.gene44118.t1 | MTR_8g063830 | 79.741 | 464 | 52 | 5 | 3 | 463 | 1 | 425 | 0.0 | 657 |
| MS.gene44118.t1 | MTR_3g065540 | 62.609 | 115 | 16 | 1 | 42 | 156 | 14 | 101 | 6.10e-38 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44118.t1 | AT5G25260 | 72.669 | 472 | 116 | 2 | 3 | 472 | 1 | 461 | 0.0 | 707 |
| MS.gene44118.t1 | AT5G25250 | 72.553 | 470 | 118 | 1 | 3 | 472 | 1 | 459 | 0.0 | 702 |
| MS.gene44118.t1 | AT5G64870 | 70.339 | 472 | 126 | 2 | 4 | 472 | 3 | 463 | 0.0 | 643 |
Find 117 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAGTATTTCTCATATT+TGG | 0.119823 | 1.3:-58740434 | MS.gene44118:CDS |
| TTGAGCCTAAGATTAGTATT+TGG | 0.251063 | 1.3:-58739256 | MS.gene44118:CDS |
| CATGAGTATTTCTCATATTT+GGG | 0.292202 | 1.3:-58740433 | MS.gene44118:CDS |
| ACTTCGAAGGTGTAATTTAC+TGG | 0.296975 | 1.3:+58740781 | None:intergenic |
| AACAAGTTCATTAACATGAT+TGG | 0.311801 | 1.3:+58740633 | None:intergenic |
| CGAAGAAGGCTGTGGCTCTA+AGG | 0.317541 | 1.3:-58740105 | MS.gene44118:CDS |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 1.3:-58740358 | MS.gene44118:CDS |
| GTCAACCCTAGCTTGATTCT+TGG | 0.329722 | 1.3:+58740390 | None:intergenic |
| AAGACAGCGGGGAGAATAAA+AGG | 0.329818 | 1.3:+58740733 | None:intergenic |
| AGAGCTTTATGCAAAGAAAA+AGG | 0.337974 | 1.3:-58739441 | MS.gene44118:CDS |
| AGGGATTACTTGATGATAAA+TGG | 0.347159 | 1.3:-58739329 | MS.gene44118:CDS |
| CAACTTGAGTTGAATCAATT+CGG | 0.350972 | 1.3:-58740505 | MS.gene44118:CDS |
| ACTAACGGTGGCGGCGATAA+TGG | 0.358246 | 1.3:-58739233 | MS.gene44118:CDS |
| TGTAGGTACAAGAAGCAAAC+TGG | 0.373363 | 1.3:-58739583 | MS.gene44118:intron |
| GTGAAATTGGTTCAAAATTG+AGG | 0.384625 | 1.3:-58740345 | MS.gene44118:CDS |
| TTAGTCCAAATACTAATCTT+AGG | 0.384650 | 1.3:+58739251 | None:intergenic |
| TCAAAACCATGAAAATTTAC+CGG | 0.386301 | 1.3:-58740918 | None:intergenic |
| CAATGCGAATGTTAAGCAAT+TGG | 0.388576 | 1.3:-58740470 | MS.gene44118:CDS |
| TCAGAATACCTTGTGATAAC+AGG | 0.405430 | 1.3:-58740883 | MS.gene44118:CDS |
| CGGTCAATCCTGCTCTGTCT+TGG | 0.410865 | 1.3:-58740812 | MS.gene44118:CDS |
| GGCTTGGACCAAGGCGGCTC+AGG | 0.413477 | 1.3:-58740143 | MS.gene44118:CDS |
| CATGTTAATGAACTTGTTCA+AGG | 0.419850 | 1.3:-58740628 | MS.gene44118:CDS |
| TTCAGCCACCTGAGCCGCCT+TGG | 0.421816 | 1.3:+58740135 | None:intergenic |
| CGGTCCTCGTGTGGATGATA+AGG | 0.423356 | 1.3:-58740704 | MS.gene44118:CDS |
| GGCTGGGGAGGGTGACAAGG+AGG | 0.433381 | 1.3:-58740257 | MS.gene44118:CDS |
| TGAAATTGGTTCAAAATTGA+GGG | 0.433449 | 1.3:-58740344 | MS.gene44118:CDS |
| TTATTGCGATGCAGAGGGCT+GGG | 0.452498 | 1.3:-58740273 | MS.gene44118:CDS |
| AGCATGCGGTGAAATAAGTT+TGG | 0.456709 | 1.3:+58740663 | None:intergenic |
| GTTATTGCGATGCAGAGGGC+TGG | 0.467250 | 1.3:-58740274 | MS.gene44118:CDS |
| CAAGACAGAGCAGGATTGAC+CGG | 0.470651 | 1.3:+58740813 | None:intergenic |
| GTAACATCTCCGTTTGCTCA+TGG | 0.473481 | 1.3:+58739141 | None:intergenic |
| TGCGATGCAGAGGGCTGGGG+AGG | 0.475380 | 1.3:-58740269 | MS.gene44118:CDS |
| AAGAAAGCATGGATTATTCC+CGG | 0.476347 | 1.3:-58740832 | MS.gene44118:CDS |
| TTGGACCAAGGCGGCTCAGG+TGG | 0.476684 | 1.3:-58740140 | MS.gene44118:CDS |
| GATGTTACCACCTGCTTGGA+TGG | 0.478172 | 1.3:-58739126 | MS.gene44118:CDS |
| CTCCCCGCTGTCTTCACTAT+CGG | 0.478414 | 1.3:-58740724 | MS.gene44118:CDS |
| GAGAATAAAAGGAAGTTTCT+CGG | 0.481453 | 1.3:+58740744 | None:intergenic |
| GAAACAACTACACAGCTGTA+AGG | 0.490449 | 1.3:-58739349 | MS.gene44118:CDS |
| ATTCTGATGCTTTCGCGACC+CGG | 0.494061 | 1.3:+58740899 | None:intergenic |
| AGCAATTCTGTATGAGAAGA+AGG | 0.509643 | 1.3:-58739531 | MS.gene44118:CDS |
| AGTACACTTCTTAATGCACT+TGG | 0.511750 | 1.3:-58739371 | MS.gene44118:CDS |
| TGCTTCCATGACGATGGAGG+AGG | 0.512100 | 1.3:-58740575 | MS.gene44118:CDS |
| GGACCGATAGTGAAGACAGC+GGG | 0.513792 | 1.3:+58740721 | None:intergenic |
| CGATAATGGTGAAGGTGCCA+TGG | 0.514200 | 1.3:-58739219 | MS.gene44118:CDS |
| GAGGGCTGGGGAGGGTGACA+AGG | 0.520045 | 1.3:-58740260 | MS.gene44118:CDS |
| GGCTGAAGTCGAGGCGAAGA+AGG | 0.523986 | 1.3:-58740119 | MS.gene44118:CDS |
| GCGATGCAGAGGGCTGGGGA+GGG | 0.526835 | 1.3:-58740268 | MS.gene44118:CDS |
| CGGAGATGTTACCACCTGCT+TGG | 0.527198 | 1.3:-58739130 | MS.gene44118:CDS |
| TAAGTTTGGCGTATTTGAGA+AGG | 0.534048 | 1.3:+58740677 | None:intergenic |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 1.3:+58739202 | None:intergenic |
| GGCAAGACTCCCATCCAAGC+AGG | 0.534806 | 1.3:+58739116 | None:intergenic |
| TGAGAGGTCCAAGACAGAGC+AGG | 0.535358 | 1.3:+58740804 | None:intergenic |
| CTAAGGGAAGCTGAGTTACA+AGG | 0.541402 | 1.3:-58740088 | MS.gene44118:CDS |
| GGCTCAAGCTAATTCTGAGT+TGG | 0.541784 | 1.3:-58740179 | MS.gene44118:CDS |
| GAAGAAGGCTGTGGCTCTAA+GGG | 0.545005 | 1.3:-58740104 | MS.gene44118:CDS |
| TATTGCGATGCAGAGGGCTG+GGG | 0.546542 | 1.3:-58740272 | MS.gene44118:CDS |
| TAAAACTTGCAAAGAAAGCA+TGG | 0.546667 | 1.3:-58740843 | MS.gene44118:CDS |
| TGCTGCTTCCATGACGATGG+AGG | 0.547408 | 1.3:-58740578 | MS.gene44118:CDS |
| TAAGACCGTCCATGAGCAAA+CGG | 0.547678 | 1.3:-58739150 | MS.gene44118:CDS |
| TGGAAGCCAAGAATCAAGCT+AGG | 0.548842 | 1.3:-58740396 | MS.gene44118:CDS |
| CAAAACCATGAAAATTTACC+GGG | 0.550281 | 1.3:-58740917 | None:intergenic |
| GTGACACTTGGACAAGCTCA+AGG | 0.553312 | 1.3:-58739404 | MS.gene44118:CDS |
| AGTCGAGGCGAAGAAGGCTG+TGG | 0.558891 | 1.3:-58740113 | MS.gene44118:CDS |
| GGCTCAGGTGGCTGAAGTCG+AGG | 0.562422 | 1.3:-58740128 | MS.gene44118:CDS |
| TGCGAATGTTAAGCAATTGG+TGG | 0.563120 | 1.3:-58740467 | MS.gene44118:CDS |
| AAGATTAGTATTTGGACTAA+CGG | 0.563509 | 1.3:-58739248 | MS.gene44118:CDS |
| ATTGAACACTAGCTTTGCTA+AGG | 0.566032 | 1.3:+58740011 | None:intergenic |
| GAAGAAAGCGGCTTGGACCA+AGG | 0.572319 | 1.3:-58740152 | MS.gene44118:CDS |
| GAAAACCTCCTCCATCGTCA+TGG | 0.573319 | 1.3:+58740570 | None:intergenic |
| ATGTTACCACCTGCTTGGAT+GGG | 0.573544 | 1.3:-58739125 | MS.gene44118:CDS |
| GCAGAGGGAATTGTGACACT+TGG | 0.575919 | 1.3:-58739416 | MS.gene44118:CDS |
| CTTCACTATCGGTCCTCGTG+TGG | 0.576587 | 1.3:-58740713 | MS.gene44118:CDS |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 1.3:-58739200 | MS.gene44118:CDS |
| ATTGGTTCAAAATTGAGGGA+AGG | 0.580771 | 1.3:-58740340 | MS.gene44118:CDS |
| TCTTGCTGCTTCCATGACGA+TGG | 0.585164 | 1.3:-58740581 | MS.gene44118:CDS |
| TGGCTAAGAAGAAAGCGGCT+TGG | 0.585206 | 1.3:-58740159 | MS.gene44118:CDS |
| AAACAACTACACAGCTGTAA+GGG | 0.585417 | 1.3:-58739348 | MS.gene44118:CDS |
| CGAAGGTTATTGCGATGCAG+AGG | 0.587186 | 1.3:-58740279 | MS.gene44118:CDS |
| AAGACAGAGCAGGATTGACC+GGG | 0.589066 | 1.3:+58740814 | None:intergenic |
| GCTGGGGAGGGTGACAAGGA+GGG | 0.589298 | 1.3:-58740256 | MS.gene44118:CDS |
| GAATCAAAGAGAGGCTGAAG+TGG | 0.589954 | 1.3:-58740200 | MS.gene44118:CDS |
| GGCAGAAGCACAGAAAGCAT+CGG | 0.592056 | 1.3:-58739504 | MS.gene44118:CDS |
| GATAATGGTGAAGGTGCCAT+GGG | 0.600255 | 1.3:-58739218 | MS.gene44118:CDS |
| TCTGTATGAGAAGAAGGCAG+AGG | 0.600808 | 1.3:-58739525 | MS.gene44118:CDS |
| TCATGGACGGTCTTAAACAA+AGG | 0.601527 | 1.3:+58739158 | None:intergenic |
| ACTCATAGCTTGAACTTCGA+AGG | 0.602674 | 1.3:+58740768 | None:intergenic |
| AGTTACAAGGTGAAGTTGAG+AGG | 0.609202 | 1.3:-58740075 | MS.gene44118:CDS |
| TGACACTTGGACAAGCTCAA+GGG | 0.610411 | 1.3:-58739403 | MS.gene44118:CDS |
| TTTGGGTCAAAAGACGCAGA+TGG | 0.613836 | 1.3:-58740416 | MS.gene44118:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 1.3:-58740367 | MS.gene44118:CDS |
| GACACTTGGACAAGCTCAAG+GGG | 0.615609 | 1.3:-58739402 | MS.gene44118:CDS |
| GATTGCTAAGATTAATGCTG+AGG | 0.620636 | 1.3:-58739291 | MS.gene44118:CDS |
| AGTATTTGGACTAACGGTGG+CGG | 0.622001 | 1.3:-58739242 | MS.gene44118:CDS |
| GTAGGTACAAGAAGCAAACT+GGG | 0.627939 | 1.3:-58739582 | MS.gene44118:intron |
| CATCTCCGTTTGCTCATGGA+CGG | 0.630434 | 1.3:+58739145 | None:intergenic |
| TGAGTTGGCTAAGAAGAAAG+CGG | 0.631786 | 1.3:-58740164 | MS.gene44118:CDS |
| GAAGGTTATTGCGATGCAGA+GGG | 0.633633 | 1.3:-58740278 | MS.gene44118:CDS |
| AGGTGTAATTTACTGGTGAG+AGG | 0.635993 | 1.3:+58740788 | None:intergenic |
| CTTGTTCAAGGAATCATCGA+AGG | 0.639303 | 1.3:-58740616 | MS.gene44118:CDS |
| GGAAGCCAAGAATCAAGCTA+GGG | 0.640292 | 1.3:-58740395 | MS.gene44118:CDS |
| TAGTGTTCAATATGAAACCA+AGG | 0.651992 | 1.3:-58739999 | MS.gene44118:intron |
| GAAAATTGATGCAGAGACGA+AGG | 0.652587 | 1.3:-58740296 | MS.gene44118:CDS |
| GAATCAAGCTAGGGTTGACG+TGG | 0.658059 | 1.3:-58740386 | MS.gene44118:CDS |
| GGTGGCGGCGATAATGGTGA+AGG | 0.658257 | 1.3:-58739227 | MS.gene44118:CDS |
| GATTACTTGATGATAAATGG+TGG | 0.658453 | 1.3:-58739326 | MS.gene44118:CDS |
| TGGACGGTCTTAAACAAAGG+TGG | 0.660087 | 1.3:+58739161 | None:intergenic |
| ATTAGTATTTGGACTAACGG+TGG | 0.669931 | 1.3:-58739245 | MS.gene44118:CDS |
| AAGACTCCCATCCAAGCAGG+TGG | 0.679480 | 1.3:+58739119 | None:intergenic |
| ATTAATGCTGAGGCAATACG+CGG | 0.688568 | 1.3:-58739281 | MS.gene44118:CDS |
| AAGCAATTGGTGGATGTGCG+CGG | 0.690257 | 1.3:-58740457 | MS.gene44118:CDS |
| ACAAGGAGGGAATTAAAGTG+AGG | 0.693697 | 1.3:-58740243 | MS.gene44118:CDS |
| TCAGAATACCTGTTATCACA+AGG | 0.699355 | 1.3:+58740875 | None:intergenic |
| CTTTCCTTATCATCCACACG+AGG | 0.701431 | 1.3:+58740700 | None:intergenic |
| GACCGATAGTGAAGACAGCG+GGG | 0.713902 | 1.3:+58740722 | None:intergenic |
| GAAAGCGGCTTGGACCAAGG+CGG | 0.735762 | 1.3:-58740149 | MS.gene44118:CDS |
| AGGACCGATAGTGAAGACAG+CGG | 0.753084 | 1.3:+58740720 | None:intergenic |
| TGATTGGAGTGTCTAGCATG+CGG | 0.779262 | 1.3:+58740649 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAAATTGAATTTGCA+TGG | + | chr1.3:58740047-58740066 | None:intergenic | 15.0% |
| !!! | AATTTTAAAAGACTAATGAA+AGG | - | chr1.3:58740139-58740158 | MS.gene44118:CDS | 15.0% |
| !!! | ACATTACACTATTATTTTTT+TGG | - | chr1.3:58740381-58740400 | MS.gene44118:CDS | 15.0% |
| !!! | TCATTATTGATTATGTTATA+TGG | - | chr1.3:58740222-58740241 | MS.gene44118:CDS | 15.0% |
| !!! | TTTTTTGGTCATTAAAACTT+TGG | - | chr1.3:58740396-58740415 | MS.gene44118:CDS | 20.0% |
| ! | AACAAGTTCATTAACATGAT+TGG | + | chr1.3:58739380-58739399 | None:intergenic | 25.0% |
| ! | AAGATTAGTATTTGGACTAA+CGG | - | chr1.3:58740762-58740781 | MS.gene44118:CDS | 25.0% |
| ! | ATAAATCAATAGCTGTTGAT+AGG | - | chr1.3:58740101-58740120 | MS.gene44118:CDS | 25.0% |
| ! | CATGAGTATTTCTCATATTT+GGG | - | chr1.3:58739577-58739596 | MS.gene44118:CDS | 25.0% |
| ! | TAATGTAACAAAGATTAAGC+AGG | + | chr1.3:58740367-58740386 | None:intergenic | 25.0% |
| ! | TCATGAGTATTTCTCATATT+TGG | - | chr1.3:58739576-58739595 | MS.gene44118:CDS | 25.0% |
| ! | TTAGTCCAAATACTAATCTT+AGG | + | chr1.3:58740762-58740781 | None:intergenic | 25.0% |
| !! | TGAAATTGGTTCAAAATTGA+GGG | - | chr1.3:58739666-58739685 | MS.gene44118:intron | 25.0% |
| !!! | CATGAGTATTGAAAATTCAA+TGG | - | chr1.3:58740340-58740359 | MS.gene44118:CDS | 25.0% |
| GAGAATAAAAGGAAGTTTCT+CGG | + | chr1.3:58739269-58739288 | None:intergenic | 30.0% | |
| TAAAACTTGCAAAGAAAGCA+TGG | - | chr1.3:58739167-58739186 | MS.gene44118:CDS | 30.0% | |
| TAGTGTTCAATATGAAACCA+AGG | - | chr1.3:58740011-58740030 | MS.gene44118:CDS | 30.0% | |
| TTGAGCCTAAGATTAGTATT+TGG | - | chr1.3:58740754-58740773 | MS.gene44118:CDS | 30.0% | |
| TTGGTCATTAAAACTTTGGA+TGG | - | chr1.3:58740400-58740419 | MS.gene44118:CDS | 30.0% | |
| ! | AGAGCTTTATGCAAAGAAAA+AGG | - | chr1.3:58740569-58740588 | MS.gene44118:CDS | 30.0% |
| ! | AGGGATTACTTGATGATAAA+TGG | - | chr1.3:58740681-58740700 | MS.gene44118:CDS | 30.0% |
| ! | CATGTTAATGAACTTGTTCA+AGG | - | chr1.3:58739382-58739401 | MS.gene44118:CDS | 30.0% |
| ! | GATTACTTGATGATAAATGG+TGG | - | chr1.3:58740684-58740703 | MS.gene44118:CDS | 30.0% |
| ! | GTGAAATTGGTTCAAAATTG+AGG | - | chr1.3:58739665-58739684 | MS.gene44118:intron | 30.0% |
| !! | AGTTTTTGAGAATCAAAGAG+AGG | - | chr1.3:58739801-58739820 | MS.gene44118:intron | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+CGG | - | chr1.3:58739505-58739524 | MS.gene44118:CDS | 30.0% |
| AAACAACTACACAGCTGTAA+GGG | - | chr1.3:58740662-58740681 | MS.gene44118:CDS | 35.0% | |
| AAACTTTGGATGGTGTATGT+AGG | - | chr1.3:58740410-58740429 | MS.gene44118:CDS | 35.0% | |
| AGCAATTCTGTATGAGAAGA+AGG | - | chr1.3:58740479-58740498 | MS.gene44118:CDS | 35.0% | |
| AGTACACTTCTTAATGCACT+TGG | - | chr1.3:58740639-58740658 | MS.gene44118:CDS | 35.0% | |
| ATTAGTATTTGGACTAACGG+TGG | - | chr1.3:58740765-58740784 | MS.gene44118:CDS | 35.0% | |
| CAATGCGAATGTTAAGCAAT+TGG | - | chr1.3:58739540-58739559 | MS.gene44118:CDS | 35.0% | |
| GATTGCTAAGATTAATGCTG+AGG | - | chr1.3:58740719-58740738 | MS.gene44118:CDS | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | - | chr1.3:58739652-58739671 | MS.gene44118:intron | 35.0% | |
| GCTGTACAAAAAACAGAAAG+AGG | - | chr1.3:58740452-58740471 | MS.gene44118:CDS | 35.0% | |
| GCTTTATGCAAAGAAAAAGG+AGG | - | chr1.3:58740572-58740591 | MS.gene44118:CDS | 35.0% | |
| TAAGTTTGGCGTATTTGAGA+AGG | + | chr1.3:58739336-58739355 | None:intergenic | 35.0% | |
| TCAGAATACCTGTTATCACA+AGG | + | chr1.3:58739138-58739157 | None:intergenic | 35.0% | |
| TCAGAATACCTTGTGATAAC+AGG | - | chr1.3:58739127-58739146 | MS.gene44118:CDS | 35.0% | |
| ! | AAGAAAGCATGGATTATTCC+CGG | - | chr1.3:58739178-58739197 | MS.gene44118:CDS | 35.0% |
| ! | ACTTCGAAGGTGTAATTTAC+TGG | + | chr1.3:58739232-58739251 | None:intergenic | 35.0% |
| ! | ATTGGTTCAAAATTGAGGGA+AGG | - | chr1.3:58739670-58739689 | MS.gene44118:intron | 35.0% |
| ! | GAAAGGATAGACAACTTTTG+AGG | - | chr1.3:58740156-58740175 | MS.gene44118:CDS | 35.0% |
| !! | ATTGAACACTAGCTTTGCTA+AGG | + | chr1.3:58740002-58740021 | None:intergenic | 35.0% |
| !! | GTTTGAACTGTTTTGTTCCT+TGG | + | chr1.3:58739465-58739484 | None:intergenic | 35.0% |
| ACAAGGAGGGAATTAAAGTG+AGG | - | chr1.3:58739767-58739786 | MS.gene44118:intron | 40.0% | |
| ACTCATAGCTTGAACTTCGA+AGG | + | chr1.3:58739245-58739264 | None:intergenic | 40.0% | |
| AGCAACTTCTTTCATACCCA+TGG | + | chr1.3:58740811-58740830 | None:intergenic | 40.0% | |
| AGCATGCGGTGAAATAAGTT+TGG | + | chr1.3:58739350-58739369 | None:intergenic | 40.0% | |
| AGGTGTAATTTACTGGTGAG+AGG | + | chr1.3:58739225-58739244 | None:intergenic | 40.0% | |
| AGTTACAAGGTGAAGTTGAG+AGG | - | chr1.3:58739935-58739954 | MS.gene44118:intron | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | - | chr1.3:58740810-58740829 | MS.gene44118:CDS | 40.0% | |
| ATTAATGCTGAGGCAATACG+CGG | - | chr1.3:58740729-58740748 | MS.gene44118:CDS | 40.0% | |
| CTTGTTCAAGGAATCATCGA+AGG | - | chr1.3:58739394-58739413 | MS.gene44118:CDS | 40.0% | |
| GAAAATTGATGCAGAGACGA+AGG | - | chr1.3:58739714-58739733 | MS.gene44118:intron | 40.0% | |
| GAAACAACTACACAGCTGTA+AGG | - | chr1.3:58740661-58740680 | MS.gene44118:CDS | 40.0% | |
| GTAGGTACAAGAAGCAAACT+GGG | - | chr1.3:58740428-58740447 | MS.gene44118:CDS | 40.0% | |
| TCATGGACGGTCTTAAACAA+AGG | + | chr1.3:58740855-58740874 | None:intergenic | 40.0% | |
| TGCGAATGTTAAGCAATTGG+TGG | - | chr1.3:58739543-58739562 | MS.gene44118:CDS | 40.0% | |
| TGTAGGTACAAGAAGCAAAC+TGG | - | chr1.3:58740427-58740446 | MS.gene44118:CDS | 40.0% | |
| ! | TGAGTTGGCTAAGAAGAAAG+CGG | - | chr1.3:58739846-58739865 | MS.gene44118:intron | 40.0% |
| ! | TGCATGGACTAAACTAACCT+TGG | + | chr1.3:58740031-58740050 | None:intergenic | 40.0% |
| AAGACAGCGGGGAGAATAAA+AGG | + | chr1.3:58739280-58739299 | None:intergenic | 45.0% | |
| AGTATTTGGACTAACGGTGG+CGG | - | chr1.3:58740768-58740787 | MS.gene44118:CDS | 45.0% | |
| ATGTTACCACCTGCTTGGAT+GGG | - | chr1.3:58740885-58740904 | MS.gene44118:CDS | 45.0% | |
| CTAAGGGAAGCTGAGTTACA+AGG | - | chr1.3:58739922-58739941 | MS.gene44118:intron | 45.0% | |
| CTTTCCTTATCATCCACACG+AGG | + | chr1.3:58739313-58739332 | None:intergenic | 45.0% | |
| GAAGGTTATTGCGATGCAGA+GGG | - | chr1.3:58739732-58739751 | MS.gene44118:intron | 45.0% | |
| GAATCAAAGAGAGGCTGAAG+TGG | - | chr1.3:58739810-58739829 | MS.gene44118:intron | 45.0% | |
| GCAAAGAAAAAGGAGGCAGA+GGG | - | chr1.3:58740579-58740598 | MS.gene44118:CDS | 45.0% | |
| GGAAGCCAAGAATCAAGCTA+GGG | - | chr1.3:58739615-58739634 | MS.gene44118:intron | 45.0% | |
| GGCTCAAGCTAATTCTGAGT+TGG | - | chr1.3:58739831-58739850 | MS.gene44118:intron | 45.0% | |
| GTAACATCTCCGTTTGCTCA+TGG | + | chr1.3:58740872-58740891 | None:intergenic | 45.0% | |
| GTCAACCCTAGCTTGATTCT+TGG | + | chr1.3:58739623-58739642 | None:intergenic | 45.0% | |
| GTGGCAGAAGCTAAGATGAA+AGG | - | chr1.3:58739643-58739662 | MS.gene44118:intron | 45.0% | |
| TAAGACCGTCCATGAGCAAA+CGG | - | chr1.3:58740860-58740879 | MS.gene44118:CDS | 45.0% | |
| TCTGTATGAGAAGAAGGCAG+AGG | - | chr1.3:58740485-58740504 | MS.gene44118:CDS | 45.0% | |
| TGACACTTGGACAAGCTCAA+GGG | - | chr1.3:58740607-58740626 | MS.gene44118:CDS | 45.0% | |
| TGCAAAGAAAAAGGAGGCAG+AGG | - | chr1.3:58740578-58740597 | MS.gene44118:CDS | 45.0% | |
| TGGAAGCCAAGAATCAAGCT+AGG | - | chr1.3:58739614-58739633 | MS.gene44118:intron | 45.0% | |
| TGGACGGTCTTAAACAAAGG+TGG | + | chr1.3:58740852-58740871 | None:intergenic | 45.0% | |
| TTTGGGTCAAAAGACGCAGA+TGG | - | chr1.3:58739594-58739613 | MS.gene44118:intron | 45.0% | |
| ! | TGATTGGAGTGTCTAGCATG+CGG | + | chr1.3:58739364-58739383 | None:intergenic | 45.0% |
| !! | GATAATGGTGAAGGTGCCAT+GGG | - | chr1.3:58740792-58740811 | MS.gene44118:CDS | 45.0% |
| AAGACAGAGCAGGATTGACC+GGG | + | chr1.3:58739199-58739218 | None:intergenic | 50.0% | |
| AGGACCGATAGTGAAGACAG+CGG | + | chr1.3:58739293-58739312 | None:intergenic | 50.0% | |
| ATTCTGATGCTTTCGCGACC+CGG | + | chr1.3:58739114-58739133 | None:intergenic | 50.0% | |
| CAAGACAGAGCAGGATTGAC+CGG | + | chr1.3:58739200-58739219 | None:intergenic | 50.0% | |
| CATCTCCGTTTGCTCATGGA+CGG | + | chr1.3:58740868-58740887 | None:intergenic | 50.0% | |
| CGAAGGTTATTGCGATGCAG+AGG | - | chr1.3:58739731-58739750 | MS.gene44118:intron | 50.0% | |
| GAAAACCTCCTCCATCGTCA+TGG | + | chr1.3:58739443-58739462 | None:intergenic | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | - | chr1.3:58739624-58739643 | MS.gene44118:intron | 50.0% | |
| GACACTTGGACAAGCTCAAG+GGG | - | chr1.3:58740608-58740627 | MS.gene44118:CDS | 50.0% | |
| GATGTTACCACCTGCTTGGA+TGG | - | chr1.3:58740884-58740903 | MS.gene44118:CDS | 50.0% | |
| GCAGAGGGAATTGTGACACT+TGG | - | chr1.3:58740594-58740613 | MS.gene44118:CDS | 50.0% | |
| GTGACACTTGGACAAGCTCA+AGG | - | chr1.3:58740606-58740625 | MS.gene44118:CDS | 50.0% | |
| TGGCTAAGAAGAAAGCGGCT+TGG | - | chr1.3:58739851-58739870 | MS.gene44118:intron | 50.0% | |
| TTATTGCGATGCAGAGGGCT+GGG | - | chr1.3:58739737-58739756 | MS.gene44118:intron | 50.0% | |
| ! | AAGCAATTGGTGGATGTGCG+CGG | - | chr1.3:58739553-58739572 | MS.gene44118:CDS | 50.0% |
| ! | ACGATGGAGGAGGTTTTCCA+AGG | - | chr1.3:58739445-58739464 | MS.gene44118:CDS | 50.0% |
| ! | GGCAGAAGCACAGAAAGCAT+CGG | - | chr1.3:58740506-58740525 | MS.gene44118:CDS | 50.0% |
| ! | TCTTGCTGCTTCCATGACGA+TGG | - | chr1.3:58739429-58739448 | MS.gene44118:CDS | 50.0% |
| !! | CGATAATGGTGAAGGTGCCA+TGG | - | chr1.3:58740791-58740810 | MS.gene44118:CDS | 50.0% |
| !! | GAAGAAGGCTGTGGCTCTAA+GGG | - | chr1.3:58739906-58739925 | MS.gene44118:intron | 50.0% |
| AAGACTCCCATCCAAGCAGG+TGG | + | chr1.3:58740894-58740913 | None:intergenic | 55.0% | |
| CGGAGATGTTACCACCTGCT+TGG | - | chr1.3:58740880-58740899 | MS.gene44118:CDS | 55.0% | |
| CGGTCAATCCTGCTCTGTCT+TGG | - | chr1.3:58739198-58739217 | MS.gene44118:CDS | 55.0% | |
| CGGTCCTCGTGTGGATGATA+AGG | - | chr1.3:58739306-58739325 | MS.gene44118:CDS | 55.0% | |
| CTCCCCGCTGTCTTCACTAT+CGG | - | chr1.3:58739286-58739305 | MS.gene44118:CDS | 55.0% | |
| CTTCACTATCGGTCCTCGTG+TGG | - | chr1.3:58739297-58739316 | MS.gene44118:CDS | 55.0% | |
| GACCGATAGTGAAGACAGCG+GGG | + | chr1.3:58739291-58739310 | None:intergenic | 55.0% | |
| GGACCGATAGTGAAGACAGC+GGG | + | chr1.3:58739292-58739311 | None:intergenic | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | - | chr1.3:58739736-58739755 | MS.gene44118:intron | 55.0% | |
| TATTGCGATGCAGAGGGCTG+GGG | - | chr1.3:58739738-58739757 | MS.gene44118:intron | 55.0% | |
| TGAGAGGTCCAAGACAGAGC+AGG | + | chr1.3:58739209-58739228 | None:intergenic | 55.0% | |
| TGCTTCCATGACGATGGAGG+AGG | - | chr1.3:58739435-58739454 | MS.gene44118:CDS | 55.0% | |
| ! | ACTAACGGTGGCGGCGATAA+TGG | - | chr1.3:58740777-58740796 | MS.gene44118:CDS | 55.0% |
| ! | CGAAGAAGGCTGTGGCTCTA+AGG | - | chr1.3:58739905-58739924 | MS.gene44118:intron | 55.0% |
| ! | GAAGAAAGCGGCTTGGACCA+AGG | - | chr1.3:58739858-58739877 | MS.gene44118:intron | 55.0% |
| ! | TGCTGCTTCCATGACGATGG+AGG | - | chr1.3:58739432-58739451 | MS.gene44118:CDS | 55.0% |
| AGTCGAGGCGAAGAAGGCTG+TGG | - | chr1.3:58739897-58739916 | MS.gene44118:intron | 60.0% | |
| GGCAAGACTCCCATCCAAGC+AGG | + | chr1.3:58740897-58740916 | None:intergenic | 60.0% | |
| GGCTGAAGTCGAGGCGAAGA+AGG | - | chr1.3:58739891-58739910 | MS.gene44118:intron | 60.0% | |
| ! | GAAAGCGGCTTGGACCAAGG+CGG | - | chr1.3:58739861-58739880 | MS.gene44118:intron | 60.0% |
| ! | GGTGGCGGCGATAATGGTGA+AGG | - | chr1.3:58740783-58740802 | MS.gene44118:CDS | 60.0% |
| GCTGGGGAGGGTGACAAGGA+GGG | - | chr1.3:58739754-58739773 | MS.gene44118:intron | 65.0% | |
| GGCTCAGGTGGCTGAAGTCG+AGG | - | chr1.3:58739882-58739901 | MS.gene44118:intron | 65.0% | |
| TTCAGCCACCTGAGCCGCCT+TGG | + | chr1.3:58739878-58739897 | None:intergenic | 65.0% | |
| TTGGACCAAGGCGGCTCAGG+TGG | - | chr1.3:58739870-58739889 | MS.gene44118:intron | 65.0% | |
| GAGGGCTGGGGAGGGTGACA+AGG | - | chr1.3:58739750-58739769 | MS.gene44118:intron | 70.0% | |
| GCGATGCAGAGGGCTGGGGA+GGG | - | chr1.3:58739742-58739761 | MS.gene44118:intron | 70.0% | |
| GGCTGGGGAGGGTGACAAGG+AGG | - | chr1.3:58739753-58739772 | MS.gene44118:intron | 70.0% | |
| GGCTTGGACCAAGGCGGCTC+AGG | - | chr1.3:58739867-58739886 | MS.gene44118:intron | 70.0% | |
| TGCGATGCAGAGGGCTGGGG+AGG | - | chr1.3:58739741-58739760 | MS.gene44118:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 58739100 | 58740932 | 58739100 | ID=MS.gene44118 |
| chr1.3 | mRNA | 58739100 | 58740932 | 58739100 | ID=MS.gene44118.t1;Parent=MS.gene44118 |
| chr1.3 | exon | 58740000 | 58740932 | 58740000 | ID=MS.gene44118.t1.exon1;Parent=MS.gene44118.t1 |
| chr1.3 | CDS | 58740000 | 58740932 | 58740000 | ID=cds.MS.gene44118.t1;Parent=MS.gene44118.t1 |
| chr1.3 | exon | 58739100 | 58739600 | 58739100 | ID=MS.gene44118.t1.exon2;Parent=MS.gene44118.t1 |
| chr1.3 | CDS | 58739100 | 58739600 | 58739100 | ID=cds.MS.gene44118.t1;Parent=MS.gene44118.t1 |
| Gene Sequence |
| Protein sequence |
