AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026323

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026323.t1 MTR_1g035570 81.980 394 59 2 1 382 1 394 0.0 642
MS.gene026323.t1 MTR_1g035490 63.863 321 65 7 104 381 15 327 3.16e-125 364
MS.gene026323.t1 MTR_1g035640 51.917 339 136 4 1 321 1 330 1.20e-111 335
MS.gene026323.t1 MTR_1g035640 47.368 95 25 1 287 381 394 463 5.88e-16 79.7
MS.gene026323.t1 MTR_1g035620 45.215 418 182 10 1 381 1 408 1.08e-108 325
MS.gene026323.t1 MTR_1g050845 44.125 383 155 10 1 346 1 361 1.53e-86 280
MS.gene026323.t1 MTR_6g061070 32.816 451 212 12 14 381 27 469 3.91e-60 202
MS.gene026323.t1 MTR_1g035650 42.466 219 86 6 1 195 1 203 1.64e-44 153
MS.gene026323.t1 MTR_3g098790 33.333 285 160 7 14 275 22 299 5.24e-35 131
MS.gene026323.t1 MTR_5g044670 30.104 289 175 7 14 280 25 308 6.79e-34 129
MS.gene026323.t1 MTR_7g050710 31.579 304 164 9 8 275 12 307 6.79e-34 128
MS.gene026323.t1 MTR_7g050560 36.264 273 159 9 14 275 22 290 1.28e-32 125
MS.gene026323.t1 MTR_8g103940 29.276 304 174 10 14 285 48 342 2.12e-30 122
MS.gene026323.t1 MTR_7g050580 34.409 279 156 9 14 275 22 290 2.20e-30 119
MS.gene026323.t1 MTR_1g035480 41.096 146 73 3 14 155 26 162 3.20e-30 114
MS.gene026323.t1 MTR_7g050590 34.507 284 152 10 21 275 2 280 1.75e-29 116
MS.gene026323.t1 MTR_7g050720 30.421 309 156 10 14 275 19 315 1.23e-28 114
MS.gene026323.t1 MTR_3g061350 28.622 283 173 11 9 273 12 283 6.35e-28 111
MS.gene026323.t1 MTR_1g033740 36.000 150 79 3 14 156 31 170 1.71e-27 107
MS.gene026323.t1 MTR_1g108780 30.743 296 156 10 20 279 12 294 3.58e-27 112
MS.gene026323.t1 MTR_3g061310 27.899 276 185 8 9 273 12 284 1.16e-26 108
MS.gene026323.t1 MTR_3g061320 27.206 272 186 7 9 273 12 278 2.94e-26 107
MS.gene026323.t1 MTR_3g061340 26.259 278 176 11 9 273 12 273 6.28e-26 105
MS.gene026323.t1 MTR_1g035510 43.966 116 56 2 21 136 2 108 1.36e-25 103
MS.gene026323.t1 MTR_3g061370 28.014 282 176 11 9 273 9 280 3.04e-24 101
MS.gene026323.t1 MTR_6g043890 27.612 268 172 6 13 259 23 289 4.84e-24 102
MS.gene026323.t1 MTR_1g035500 39.535 129 69 2 14 142 34 153 5.65e-24 98.2
MS.gene026323.t1 MTR_1g035460 26.712 292 171 6 21 275 2 287 7.09e-24 102
MS.gene026323.t1 MTR_1g035470 41.964 112 62 2 21 130 2 112 7.92e-23 93.6
MS.gene026323.t1 MTR_1g035520 26.333 300 169 6 21 273 88 382 2.14e-22 97.8
MS.gene026323.t1 MTR_1g035520 42.391 92 49 2 294 381 291 382 1.65e-13 71.6
MS.gene026323.t1 MTR_4g119990 27.815 302 150 10 9 261 15 297 1.38e-21 95.5
MS.gene026323.t1 MTR_3g061330 28.079 203 134 6 9 201 12 212 3.68e-21 92.0
MS.gene026323.t1 MTR_3g061290 37.705 122 69 4 9 126 12 130 1.28e-19 86.7
MS.gene026323.t1 MTR_3g005480 24.907 269 157 8 14 275 30 260 3.80e-16 78.2
MS.gene026323.t1 MTR_7g050640 41.441 111 55 4 3 103 5 115 7.36e-14 68.2
MS.gene026323.t1 MTR_4g068320 35.294 136 78 4 7 136 4 135 1.68e-13 72.0
MS.gene026323.t1 MTR_5g070440 23.507 268 172 6 14 276 30 269 2.00e-13 70.5
MS.gene026323.t1 MTR_3g005490 23.048 269 167 7 14 278 30 262 3.79e-13 69.3
MS.gene026323.t1 MTR_3g005420 25.843 267 167 8 14 276 298 537 5.60e-12 67.4
MS.gene026323.t1 MTR_1g034240 33.333 111 67 3 7 110 5 115 9.74e-12 66.6
MS.gene026323.t1 MTR_3g005460 24.638 276 161 10 14 273 271 515 1.30e-11 66.2
MS.gene026323.t1 MTR_1g035440 35.165 91 56 2 14 101 24 114 7.27e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026323.t1 AT3G18990 25.664 339 182 9 7 278 4 339 1.29e-21 95.5
MS.gene026323.t1 AT3G18990 25.893 336 179 9 7 275 4 336 1.40e-21 95.1

Find 74 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTTGCTGTGCTTCTTTA+AGG 0.097830 1.1:-20020569 MS.gene026323:CDS
CAACACCGTTTGGAAATTTA+AGG 0.151014 1.1:+20022318 None:intergenic
CTTTGGGATTGCTTCGTTTC+CGG 0.165431 1.1:+20021251 None:intergenic
TTTGCAAAGTCTTTCAAATA+TGG 0.208675 1.1:-20022233 MS.gene026323:CDS
TATTTCTCCGCATATTTCTT+AGG 0.215711 1.1:+20022368 None:intergenic
TTAAAACCTAGTAGTTTCTT+TGG 0.230973 1.1:+20021234 None:intergenic
TTTGGAAATTTAAGGAATAT+TGG 0.239838 1.1:+20022326 None:intergenic
AGAAATATGCGGAGAAATAT+TGG 0.263999 1.1:-20022364 MS.gene026323:CDS
TTAATGGAACTGCAACAATA+AGG 0.270673 1.1:-20021452 MS.gene026323:CDS
TTCATCAACTGATTTGATAT+TGG 0.273749 1.1:+20022127 None:intergenic
ACATAACACATTCAAGGTTT+TGG 0.285361 1.1:-20020921 MS.gene026323:CDS
TGGAGAGTAATGGTGATATT+TGG 0.287546 1.1:-20022277 MS.gene026323:CDS
TTGGAGATACTTGTCTCTTT+AGG 0.296651 1.1:-20020626 MS.gene026323:CDS
TTACGTCAATGGCTATTTCT+TGG 0.299414 1.1:-20021588 MS.gene026323:intron
CTTGCCCTTTGAACTTGCTT+TGG 0.300449 1.1:+20022017 None:intergenic
CTCTTAACTTTCAAATTCAT+TGG 0.314459 1.1:-20022206 MS.gene026323:CDS
TTGGAAATTTAAGGAATATT+GGG 0.324170 1.1:+20022327 None:intergenic
GTGGTGGTTGGAAAATATTC+AGG 0.328531 1.1:-20021362 MS.gene026323:CDS
TTATAAAGAAAGATCTTGTT+TGG 0.355178 1.1:-20021385 MS.gene026323:CDS
GAGGTTAGTTTGAGGTATTA+TGG 0.363534 1.1:-20021408 MS.gene026323:CDS
AATATTATTCTATGAAAATC+TGG 0.366274 1.1:+20022515 None:intergenic
TAAAACCTAGTAGTTTCTTT+GGG 0.368375 1.1:+20021235 None:intergenic
TAATGGAACTGCAACAATAA+GGG 0.385781 1.1:-20021451 MS.gene026323:CDS
ATAATTTATTTCTAAAGTAT+TGG 0.398912 1.1:+20022151 None:intergenic
ATTGTGACAATGAATGAAAA+AGG 0.410109 1.1:+20021282 None:intergenic
GCAAGTTCAAAGGGCAAGAA+AGG 0.419471 1.1:-20022012 MS.gene026323:CDS
ACAGCTTCAGATTGTGCCAT+TGG 0.421914 1.1:+20021650 None:intergenic
GTGTTATGTTTCATCACATC+AGG 0.425287 1.1:+20020935 None:intergenic
TATAAAGAAAGATCTTGTTT+GGG 0.427295 1.1:-20021384 MS.gene026323:CDS
GATGAAACATAACACATTCA+AGG 0.454763 1.1:-20020927 MS.gene026323:CDS
CAGCTTCAGATTGTGCCATT+GGG 0.460205 1.1:+20021651 None:intergenic
AAAGAATGCAATGTGGAGAT+TGG 0.464528 1.1:-20020645 MS.gene026323:CDS
TGTCATTATAACTTCAAAAG+AGG 0.475259 1.1:+20021616 None:intergenic
TTAACTTTCAAATTCATTGG+TGG 0.475675 1.1:-20022203 MS.gene026323:CDS
AGTATTCGTGGCTGTAGGTT+CGG 0.481056 1.1:-20020690 MS.gene026323:CDS
GCTGTAGGTTCGGTAAAGAT+TGG 0.487428 1.1:-20020680 MS.gene026323:CDS
GGTGCTGAAGCCACTGAAGA+AGG 0.489506 1.1:-20022104 MS.gene026323:CDS
CCAAAGGAGTTTATGAAAAG+AGG 0.490308 1.1:-20020783 MS.gene026323:CDS
GCAATCCCAAAGAAACTACT+AGG 0.493084 1.1:-20021240 MS.gene026323:intron
GATCTTGTTTGGGTGGTGGT+TGG 0.501988 1.1:-20021374 MS.gene026323:CDS
GTCATTATAACTTCAAAAGA+GGG 0.507540 1.1:+20021617 None:intergenic
GGAGTGTGGAGGTTAGTTTG+AGG 0.513468 1.1:-20021416 MS.gene026323:CDS
ACTTTCTTTACCTTCTTCAG+TGG 0.514754 1.1:+20022094 None:intergenic
AACTATTATGAGAGTATTCG+TGG 0.521105 1.1:-20020702 MS.gene026323:CDS
CTCATCACTCTCTTCTTCAG+TGG 0.522716 1.1:+20022061 None:intergenic
TTTGGTGAAGAGCACAGCCC+CGG 0.523538 1.1:-20020903 MS.gene026323:intron
AGGATGTCATGAAAATATTG+TGG 0.531604 1.1:-20020763 MS.gene026323:CDS
ATTGTCACAATTACTCGTGC+CGG 0.532896 1.1:-20021270 MS.gene026323:CDS
ATGACACAATCTTACGTCAA+TGG 0.537902 1.1:-20021599 MS.gene026323:CDS
AAAGAAAGATCTTGTTTGGG+TGG 0.538945 1.1:-20021381 MS.gene026323:CDS
AATATCAAATCAGTTGATGA+AGG 0.540855 1.1:-20022125 MS.gene026323:CDS
ATATTCCTTAAATTTCCAAA+CGG 0.542665 1.1:-20022323 MS.gene026323:CDS
AAGGGCAAGAGAAAATTCTC+AGG 0.544762 1.1:-20021993 MS.gene026323:intron
GAAAGATCTTGTTTGGGTGG+TGG 0.546468 1.1:-20021378 MS.gene026323:CDS
CAATAAGGGTTGGTAATGAA+AGG 0.551596 1.1:-20021437 MS.gene026323:CDS
GAGTGATGAGAGTTCAGATG+AGG 0.552149 1.1:-20022048 MS.gene026323:CDS
TCTTTAGGTTAATTGATGAA+AGG 0.553116 1.1:-20020611 MS.gene026323:CDS
AATGCCAAAGCAAGTTCAAA+GGG 0.555536 1.1:-20022021 MS.gene026323:CDS
CAAGTTCAAAGGGCAAGAAA+GGG 0.556600 1.1:-20022011 MS.gene026323:CDS
GTAAATTTGAGATGATTCGA+CGG 0.557247 1.1:-20021308 MS.gene026323:CDS
AAATGCCAAAGCAAGTTCAA+AGG 0.559020 1.1:-20022022 MS.gene026323:CDS
GTATTTGCAGACTGTACCAA+AGG 0.572448 1.1:-20020799 MS.gene026323:intron
GGAACTGCAACAATAAGGGT+TGG 0.581562 1.1:-20021447 MS.gene026323:CDS
GAGAAAGTCATGGTTCGTAA+AGG 0.590660 1.1:-20020727 MS.gene026323:CDS
AGAAGGTAAAGAAAGTGATG+AGG 0.601536 1.1:-20022087 MS.gene026323:CDS
TGGTGGTTGGAAAATATTCA+GGG 0.603185 1.1:-20021361 MS.gene026323:CDS
AGTTAGTAACAAAGTGAGCA+TGG 0.605994 1.1:-20021693 MS.gene026323:CDS
GGTTGGTAATGAAAGGAGTG+TGG 0.615653 1.1:-20021430 MS.gene026323:CDS
ATGAGAGTATTCGTGGCTGT+AGG 0.616385 1.1:-20020695 MS.gene026323:CDS
TATGCGGAGAAATATTGGAA+AGG 0.627004 1.1:-20022359 MS.gene026323:CDS
TGGTAATGAAAGGAGTGTGG+AGG 0.642373 1.1:-20021427 MS.gene026323:CDS
GAAGCCTAGAAAATACCCAA+TGG 0.693832 1.1:-20021666 MS.gene026323:CDS
GAGGGTTCCTAAGAAATATG+CGG 0.695694 1.1:-20022375 MS.gene026323:CDS
ATTCATGAAAGAATGCAATG+TGG 0.699756 1.1:-20020652 MS.gene026323:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTATTTCTAAAGTAT+TGG + chr1.1:20020948-20020967 None:intergenic 10.0%
!! AATATTATTCTATGAAAATC+TGG + chr1.1:20020584-20020603 None:intergenic 15.0%
!!! ATAAAAATATGTGACTTTTT+TGG - chr1.1:20021296-20021315 MS.gene026323:CDS 15.0%
!!! ATATTTGGTTTCAAAAAAAT+TGG - chr1.1:20020834-20020853 MS.gene026323:intron 15.0%
!!! CAAATATCTCTAAATTTTTT+GGG - chr1.1:20022079-20022098 MS.gene026323:CDS 15.0%
!!! GAAAAATATAATTTTCAAGT+TGG - chr1.1:20021757-20021776 MS.gene026323:intron 15.0%
!!! TATTTGGTTTCAAAAAAATT+GGG - chr1.1:20020835-20020854 MS.gene026323:intron 15.0%
!!! TATTTTAAGGTTAAGATATT+TGG - chr1.1:20020920-20020939 MS.gene026323:CDS 15.0%
!!! TCAAATATCTCTAAATTTTT+TGG - chr1.1:20022078-20022097 MS.gene026323:CDS 15.0%
!!! TGTTGAACAAAAAATATTTT+GGG - chr1.1:20020796-20020815 MS.gene026323:intron 15.0%
!! AAATATTGTGGAGTTAAAAA+TGG - chr1.1:20022345-20022364 MS.gene026323:CDS 20.0%
!! AATATTGTGGAGTTAAAAAT+GGG - chr1.1:20022346-20022365 MS.gene026323:CDS 20.0%
!! AGAAATCATACATTAACAAT+AGG + chr1.1:20020685-20020704 None:intergenic 20.0%
!! ATATTCCTTAAATTTCCAAA+CGG - chr1.1:20020773-20020792 MS.gene026323:CDS 20.0%
!! ATGAAAAAGGTTATAAGAAA+GGG - chr1.1:20021932-20021951 MS.gene026323:intron 20.0%
!! GAAATCATACATTAACAATA+GGG + chr1.1:20020684-20020703 None:intergenic 20.0%
!! GATCACTTGAAAAAATTTAA+TGG - chr1.1:20021628-20021647 MS.gene026323:CDS 20.0%
!! TAAACATACAATATACAGTT+AGG + chr1.1:20022022-20022041 None:intergenic 20.0%
!! TATGAAAAAGGTTATAAGAA+AGG - chr1.1:20021931-20021950 MS.gene026323:intron 20.0%
!! TTATAAAGAAAGATCTTGTT+TGG - chr1.1:20021711-20021730 MS.gene026323:intron 20.0%
!! TTGGAAATTTAAGGAATATT+GGG + chr1.1:20020772-20020791 None:intergenic 20.0%
!! TTTGGAAATTTAAGGAATAT+TGG + chr1.1:20020773-20020792 None:intergenic 20.0%
!!! GTGTTGAACAAAAAATATTT+TGG - chr1.1:20020795-20020814 MS.gene026323:intron 20.0%
!!! TATAAAGAAAGATCTTGTTT+GGG - chr1.1:20021712-20021731 MS.gene026323:intron 20.0%
!!! TTTTATGTAATTAATCCTAC+CGG + chr1.1:20022215-20022234 None:intergenic 20.0%
! ATATTGTGGAGTTAAAAATG+GGG - chr1.1:20022347-20022366 MS.gene026323:CDS 25.0%
! ATTGTGACAATGAATGAAAA+AGG + chr1.1:20021817-20021836 None:intergenic 25.0%
! CTCTTAACTTTCAAATTCAT+TGG - chr1.1:20020890-20020909 MS.gene026323:intron 25.0%
! GTCATTATAACTTCAAAAGA+GGG + chr1.1:20021482-20021501 None:intergenic 25.0%
! TAAAACCTAGTAGTTTCTTT+GGG + chr1.1:20021864-20021883 None:intergenic 25.0%
! TGAAAAAGGTTATAAGAAAG+GGG - chr1.1:20021933-20021952 MS.gene026323:intron 25.0%
! TGTCATTATAACTTCAAAAG+AGG + chr1.1:20021483-20021502 None:intergenic 25.0%
! TTAAAACCTAGTAGTTTCTT+TGG + chr1.1:20021865-20021884 None:intergenic 25.0%
! TTAACTTTCAAATTCATTGG+TGG - chr1.1:20020893-20020912 MS.gene026323:intron 25.0%
! TTTATGTAATTAATCCTACC+GGG + chr1.1:20022214-20022233 None:intergenic 25.0%
! TTTGCAAAGTCTTTCAAATA+TGG - chr1.1:20020863-20020882 MS.gene026323:intron 25.0%
!! TCTTTAGGTTAATTGATGAA+AGG - chr1.1:20022485-20022504 MS.gene026323:intron 25.0%
!!! AAATATGTGACTTTTTTGGA+AGG - chr1.1:20021300-20021319 MS.gene026323:CDS 25.0%
!!! AATATCAAATCAGTTGATGA+AGG - chr1.1:20020971-20020990 MS.gene026323:intron 25.0%
!!! TAATTGCTTTTAAGAGTCAA+TGG - chr1.1:20021171-20021190 MS.gene026323:intron 25.0%
!!! TGAACAAAAAATATTTTGGG+TGG - chr1.1:20020799-20020818 MS.gene026323:intron 25.0%
!!! TTCATCAACTGATTTGATAT+TGG + chr1.1:20020972-20020991 None:intergenic 25.0%
ACATTAACAATAGGGATTAC+AGG + chr1.1:20020676-20020695 None:intergenic 30.0%
AGAAATATGCGGAGAAATAT+TGG - chr1.1:20020732-20020751 MS.gene026323:CDS 30.0%
AGGATGTCATGAAAATATTG+TGG - chr1.1:20022333-20022352 MS.gene026323:CDS 30.0%
ATTCATGAAAGAATGCAATG+TGG - chr1.1:20022444-20022463 MS.gene026323:intron 30.0%
CTAAAAAAGAAACTGAATCC+TGG + chr1.1:20021992-20022011 None:intergenic 30.0%
GATGAAACATAACACATTCA+AGG - chr1.1:20022169-20022188 MS.gene026323:CDS 30.0%
GTTTATGCCTATTGTATAGA+AGG - chr1.1:20022137-20022156 MS.gene026323:CDS 30.0%
TAATGGAACTGCAACAATAA+GGG - chr1.1:20021645-20021664 MS.gene026323:CDS 30.0%
TATTTCTCCGCATATTTCTT+AGG + chr1.1:20020731-20020750 None:intergenic 30.0%
TCTGAAAGCTTGTAAATCTA+AGG - chr1.1:20021218-20021237 MS.gene026323:intron 30.0%
TGATCTCTTGAAAAATCACT+TGG + chr1.1:20021613-20021632 None:intergenic 30.0%
TTAATGGAACTGCAACAATA+AGG - chr1.1:20021644-20021663 MS.gene026323:CDS 30.0%
TTATGTAATTAATCCTACCG+GGG + chr1.1:20022213-20022232 None:intergenic 30.0%
! ACATAACACATTCAAGGTTT+TGG - chr1.1:20022175-20022194 MS.gene026323:CDS 30.0%
! GTAAATTTGAGATGATTCGA+CGG - chr1.1:20021788-20021807 MS.gene026323:intron 30.0%
! TAAACCATGATTTGAAACAG+TGG - chr1.1:20021584-20021603 MS.gene026323:intron 30.0%
!! AACTATTATGAGAGTATTCG+TGG - chr1.1:20022394-20022413 MS.gene026323:intron 30.0%
!! CATTGGTGGATCATATTTTA+AGG - chr1.1:20020907-20020926 MS.gene026323:CDS 30.0%
!!! ATTTTTTGTTCAACACCGTT+TGG + chr1.1:20020791-20020810 None:intergenic 30.0%
AAAGAATGCAATGTGGAGAT+TGG - chr1.1:20022451-20022470 MS.gene026323:intron 35.0%
AAATGCCAAAGCAAGTTCAA+AGG - chr1.1:20021074-20021093 MS.gene026323:intron 35.0%
AACTGAATCCTGGATAACTT+AGG + chr1.1:20021982-20022001 None:intergenic 35.0%
AATGCCAAAGCAAGTTCAAA+GGG - chr1.1:20021075-20021094 MS.gene026323:intron 35.0%
ACTTTCTTTACCTTCTTCAG+TGG + chr1.1:20021005-20021024 None:intergenic 35.0%
AGAAGGTAAAGAAAGTGATG+AGG - chr1.1:20021009-20021028 MS.gene026323:intron 35.0%
AGTTAGTAACAAAGTGAGCA+TGG - chr1.1:20021403-20021422 MS.gene026323:CDS 35.0%
ATCAGGACCTTCTATACAAT+AGG + chr1.1:20022147-20022166 None:intergenic 35.0%
ATGACACAATCTTACGTCAA+TGG - chr1.1:20021497-20021516 MS.gene026323:intron 35.0%
CAACACCGTTTGGAAATTTA+AGG + chr1.1:20020781-20020800 None:intergenic 35.0%
CCAAAGGAGTTTATGAAAAG+AGG - chr1.1:20022313-20022332 MS.gene026323:CDS 35.0%
CTGAATTTCTTTGTTGCAGA+GGG - chr1.1:20020703-20020722 MS.gene026323:CDS 35.0%
GAAAATTCTCAGGTGAGTTT+AGG - chr1.1:20021113-20021132 MS.gene026323:intron 35.0%
GTAACCACTGTTTCAAATCA+TGG + chr1.1:20021591-20021610 None:intergenic 35.0%
GTGTTATGTTTCATCACATC+AGG + chr1.1:20022164-20022183 None:intergenic 35.0%
TAAAAATGGGGAGAAAGTCA+TGG - chr1.1:20022359-20022378 MS.gene026323:CDS 35.0%
TATGCGGAGAAATATTGGAA+AGG - chr1.1:20020737-20020756 MS.gene026323:CDS 35.0%
TCTGAATTTCTTTGTTGCAG+AGG - chr1.1:20020702-20020721 MS.gene026323:CDS 35.0%
TGGAGAGTAATGGTGATATT+TGG - chr1.1:20020819-20020838 MS.gene026323:intron 35.0%
TGGTGGTTGGAAAATATTCA+GGG - chr1.1:20021735-20021754 MS.gene026323:intron 35.0%
TTGGAGATACTTGTCTCTTT+AGG - chr1.1:20022470-20022489 MS.gene026323:intron 35.0%
! AAAGAAAGATCTTGTTTGGG+TGG - chr1.1:20021715-20021734 MS.gene026323:intron 35.0%
! CCTCTTTTCATAAACTCCTT+TGG + chr1.1:20022316-20022335 None:intergenic 35.0%
!! ATATTTTGGGTGGAGAGTAA+TGG - chr1.1:20020809-20020828 MS.gene026323:intron 35.0%
!! CAATAAGGGTTGGTAATGAA+AGG - chr1.1:20021659-20021678 MS.gene026323:CDS 35.0%
!! CAATTTGCTGTGCTTCTTTA+AGG - chr1.1:20022527-20022546 MS.gene026323:CDS 35.0%
!! GAGGTTAGTTTGAGGTATTA+TGG - chr1.1:20021688-20021707 MS.gene026323:CDS 35.0%
!! TTACGTCAATGGCTATTTCT+TGG - chr1.1:20021508-20021527 MS.gene026323:intron 35.0%
AAGGGCAAGAGAAAATTCTC+AGG - chr1.1:20021103-20021122 MS.gene026323:intron 40.0%
ATTGTCACAATTACTCGTGC+CGG - chr1.1:20021826-20021845 MS.gene026323:intron 40.0%
CAAGTTCAAAGGGCAAGAAA+GGG - chr1.1:20021085-20021104 MS.gene026323:intron 40.0%
GAAGCCTAGAAAATACCCAA+TGG - chr1.1:20021430-20021449 MS.gene026323:CDS 40.0%
GAGAAAGTCATGGTTCGTAA+AGG - chr1.1:20022369-20022388 MS.gene026323:CDS 40.0%
GAGGGTTCCTAAGAAATATG+CGG - chr1.1:20020721-20020740 MS.gene026323:CDS 40.0%
GCAATCCCAAAGAAACTACT+AGG - chr1.1:20021856-20021875 MS.gene026323:intron 40.0%
GTATTTGCAGACTGTACCAA+AGG - chr1.1:20022297-20022316 MS.gene026323:CDS 40.0%
GTGGTGGTTGGAAAATATTC+AGG - chr1.1:20021734-20021753 MS.gene026323:intron 40.0%
GTTAGTAGCCTAAGTTATCC+AGG - chr1.1:20021971-20021990 MS.gene026323:intron 40.0%
!! TGTGCCATTGGGTATTTTCT+AGG + chr1.1:20021437-20021456 None:intergenic 40.0%
ACAGCTTCAGATTGTGCCAT+TGG + chr1.1:20021449-20021468 None:intergenic 45.0%
AGTATTCGTGGCTGTAGGTT+CGG - chr1.1:20022406-20022425 MS.gene026323:intron 45.0%
CTCATCACTCTCTTCTTCAG+TGG + chr1.1:20021038-20021057 None:intergenic 45.0%
GAGTGATGAGAGTTCAGATG+AGG - chr1.1:20021048-20021067 MS.gene026323:intron 45.0%
GCAAGTTCAAAGGGCAAGAA+AGG - chr1.1:20021084-20021103 MS.gene026323:intron 45.0%
GGAACTGCAACAATAAGGGT+TGG - chr1.1:20021649-20021668 MS.gene026323:CDS 45.0%
! CAGCTTCAGATTGTGCCATT+GGG + chr1.1:20021448-20021467 None:intergenic 45.0%
! CTTGCCCTTTGAACTTGCTT+TGG + chr1.1:20021082-20021101 None:intergenic 45.0%
! GAAAGATCTTGTTTGGGTGG+TGG - chr1.1:20021718-20021737 MS.gene026323:intron 45.0%
! GCTGTAGGTTCGGTAAAGAT+TGG - chr1.1:20022416-20022435 MS.gene026323:intron 45.0%
! TGGTAATGAAAGGAGTGTGG+AGG - chr1.1:20021669-20021688 MS.gene026323:CDS 45.0%
!! ATGAGAGTATTCGTGGCTGT+AGG - chr1.1:20022401-20022420 MS.gene026323:intron 45.0%
!! CTTTGGGATTGCTTCGTTTC+CGG + chr1.1:20021848-20021867 None:intergenic 45.0%
!! GGTTGGTAATGAAAGGAGTG+TGG - chr1.1:20021666-20021685 MS.gene026323:CDS 45.0%
!! TAATATATGATAAAAAAAAT+TGG - chr1.1:20021341-20021360 MS.gene026323:CDS 5.0%
!!! TTATAATTTTTTTATGAAAA+AGG - chr1.1:20021919-20021938 MS.gene026323:intron 5.0%
! GATCTTGTTTGGGTGGTGGT+TGG - chr1.1:20021722-20021741 MS.gene026323:intron 50.0%
!! GGAGTGTGGAGGTTAGTTTG+AGG - chr1.1:20021680-20021699 MS.gene026323:CDS 50.0%
! GGTGCTGAAGCCACTGAAGA+AGG - chr1.1:20020992-20021011 MS.gene026323:intron 55.0%
! TTTGGTGAAGAGCACAGCCC+CGG - chr1.1:20022193-20022212 MS.gene026323:CDS 55.0%
! GTGAAGAGCACAGCCCCGGT+AGG - chr1.1:20022197-20022216 MS.gene026323:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 20020563 20022555 20020563 ID=MS.gene026323
chr1.1 mRNA 20020563 20022555 20020563 ID=MS.gene026323.t1;Parent=MS.gene026323
chr1.1 exon 20022499 20022555 20022499 ID=MS.gene026323.t1.exon1;Parent=MS.gene026323.t1
chr1.1 CDS 20022499 20022555 20022499 ID=cds.MS.gene026323.t1;Parent=MS.gene026323.t1
chr1.1 exon 20021994 20022396 20021994 ID=MS.gene026323.t1.exon2;Parent=MS.gene026323.t1
chr1.1 CDS 20021994 20022396 20021994 ID=cds.MS.gene026323.t1;Parent=MS.gene026323.t1
chr1.1 exon 20021589 20021713 20021589 ID=MS.gene026323.t1.exon3;Parent=MS.gene026323.t1
chr1.1 CDS 20021589 20021713 20021589 ID=cds.MS.gene026323.t1;Parent=MS.gene026323.t1
chr1.1 exon 20021241 20021514 20021241 ID=MS.gene026323.t1.exon4;Parent=MS.gene026323.t1
chr1.1 CDS 20021241 20021514 20021241 ID=cds.MS.gene026323.t1;Parent=MS.gene026323.t1
chr1.1 exon 20020904 20020962 20020904 ID=MS.gene026323.t1.exon5;Parent=MS.gene026323.t1
chr1.1 CDS 20020904 20020962 20020904 ID=cds.MS.gene026323.t1;Parent=MS.gene026323.t1
chr1.1 exon 20020563 20020811 20020563 ID=MS.gene026323.t1.exon6;Parent=MS.gene026323.t1
chr1.1 CDS 20020563 20020811 20020563 ID=cds.MS.gene026323.t1;Parent=MS.gene026323.t1
Gene Sequence

>MS.gene026323

ATGTCATTTCAACATGTTCCAGATTTTCATAGAATAATATTGCAAGATAAGAAACTTGTAAGTCTATTACAAATAATTATATTGCATATTTTATATTATGTTTCATTTATCCTGTAATCCCTATTGTTAATGTATGATTTCTGAATTTCTTTGTTGCAGAGGGTTCCTAAGAAATATGCGGAGAAATATTGGAAAGGAATATCAAACCCAATATTCCTTAAATTTCCAAACGGTGTTGAACAAAAAATATTTTGGGTGGAGAGTAATGGTGATATTTGGTTTCAAAAAAATTGGGAAAGTTTTGCAAAGTCTTTCAAATATGGATATCTCTTAACTTTCAAATTCATTGGTGGATCATATTTTAAGGTTAAGATATTTGGTGCCAATACTTTAGAAATAAATTATGCCAATATCAAATCAGTTGATGAAGGTGCTGAAGCCACTGAAGAAGGTAAAGAAAGTGATGAGGAAGCCACTGAAGAAGAGAGTGATGAGAGTTCAGATGAGGTTGAAATGCCAAAGCAAGTTCAAAGGGCAAGAAAGGGCAAGAGAAAATTCTCAGGTGAGTTTAGGCTTGTCTAAATAAAAAACATTAGTTTTTATAGAAATAATTGCTTTTAAGAGTCAATGGTTTGTACTTTGTTGTAATTTTTTGTCTGAAAGCTTGTAAATCTAAGGAAAAAAAAGTGTCTTGAAGTGCATAATTGAGAAGCATTGTTAGATACTTTTTTCTATAAAAATATGTGACTTTTTTGGAAGGAAAAATATGTGATTTTTATAATATATGATAAAAAAAATTGGTTTTCTTAAAATTGTTTAAAAATAATCTCTAAACTTTACAGTTAGTAACAAAGTGAGCATGGTGAAGAAGCCTAGAAAATACCCAATGGCACAATCTGAAGCTGTTAATGAGAATCCCTCTTTTGAAGTTATAATGACACAATCTTACGTCAATGGCTATTTCTTGGTAAGTTTGCTATACAAAGTATCTATTAATTTAAGCTTTAATTAATATATCTAATAAACCATGATTTGAAACAGTGGTTACCAAGTGATTTTTCAAGAGATCACTTGAAAAAATTTAATGGAACTGCAACAATAAGGGTTGGTAATGAAAGGAGTGTGGAGGTTAGTTTGAGGTATTATGGTTATAAAGAAAGATCTTGTTTGGGTGGTGGTTGGAAAATATTCAGGGAAAAATATAATTTTCAAGTTGGCGATGTTTGTAAATTTGAGATGATTCGACGGAGACCTTTTTCATTCATTGTCACAATTACTCGTGCCGGAAACGAAGCAATCCCAAAGAAACTACTAGGTTTTAATTCTTTCTTTCTCTTTTATTTGCTTTTTTGTATGTTATAATTTTTTTATGAAAAAGGTTATAAGAAAGGGGTCTCTTTTTTTAATAGTTAGTAGCCTAAGTTATCCAGGATTCAGTTTCTTTTTTAGTTTAAAACCTAACTGTATATTGTATGTTTAAGTTCATACTTGAAATTTTTTAGCTCAAAAATAAATTCAAATATCTCTAAATTTTTTGGGTATTATGAAAATTAGATTAGATGATATCATTTTGTGTTTATGCCTATTGTATAGAAGGTCCTGATGTGATGAAACATAACACATTCAAGGTTTTGGTGAAGAGCACAGCCCCGGTAGGATTAATTACATAAAATATAGTTACATATATAGATAGAGATGTTAGAACTACAAAATAAATAAATGATATTTTTGTTTGTATTTGCAGACTGTACCAAAGGAGTTTATGAAAAGAGGATGTCATGAAAATATTGTGGAGTTAAAAATGGGGAGAAAGTCATGGTTCGTAAAGGTGAACTATTATGAGAGTATTCGTGGCTGTAGGTTCGGTAAAGATTGGATAAAATTCATGAAAGAATGCAATGTGGAGATTGGAGATACTTGTCTCTTTAGGTTAATTGATGAAAGGAAATTTGTGTTTGATGTTTCAATTTGCTGTGCTTCTTTAAGGCACTAA
Protein sequence

>MS.gene026323.t1

MSFQHVPDFHRIILQDKKLRVPKKYAEKYWKGISNPIFLKFPNGVEQKIFWVESNGDIWFQKNWESFAKSFKYGYLLTFKFIGGSYFKVKIFGANTLEINYANIKSVDEGAEATEEGKESDEEATEEESDESSDEVEMPKQVQRARKGKRKFSVSNKVSMVKKPRKYPMAQSEAVNENPSFEVIMTQSYVNGYFLWLPSDFSRDHLKKFNGTATIRVGNERSVEVSLRYYGYKERSCLGGGWKIFREKYNFQVGDVCKFEMIRRRPFSFIVTITRAGNEAIPKKLLEGPDVMKHNTFKVLVKSTAPTVPKEFMKRGCHENIVELKMGRKSWFVKVNYYESIRGCRFGKDWIKFMKECNVEIGDTCLFRLIDERKFVFDVSICCASLRH