Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41005.t1 | RHN78223.1 | 68.3 | 448 | 92 | 8 | 1 | 410 | 1 | 436 | 4.80E-155 | 557.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41005.t1 | Q2R9D2 | 30.2 | 129 | 80 | 4 | 142 | 262 | 263 | 389 | 1.1e-06 | 56.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41005.t1 | A0A396JPN4 | 68.3 | 448 | 92 | 8 | 1 | 410 | 1 | 436 | 3.4e-155 | 557.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene41005.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41005.t1 | MTR_1g035570 | 66.892 | 444 | 74 | 6 | 1 | 412 | 1 | 403 | 0.0 | 562 |
| MS.gene41005.t1 | MTR_1g035490 | 67.544 | 342 | 85 | 8 | 70 | 405 | 9 | 330 | 7.68e-148 | 424 |
| MS.gene41005.t1 | MTR_1g035640 | 42.857 | 483 | 179 | 12 | 1 | 404 | 1 | 465 | 1.32e-107 | 327 |
| MS.gene41005.t1 | MTR_1g035620 | 43.722 | 446 | 171 | 17 | 1 | 403 | 1 | 409 | 1.58e-94 | 291 |
| MS.gene41005.t1 | MTR_1g050845 | 42.271 | 414 | 145 | 17 | 1 | 370 | 1 | 364 | 7.50e-72 | 243 |
| MS.gene41005.t1 | MTR_6g061070 | 34.956 | 452 | 222 | 15 | 14 | 402 | 27 | 469 | 6.53e-61 | 206 |
| MS.gene41005.t1 | MTR_1g035650 | 38.117 | 223 | 81 | 6 | 1 | 186 | 1 | 203 | 3.41e-34 | 127 |
| MS.gene41005.t1 | MTR_8g103940 | 25.536 | 466 | 250 | 16 | 14 | 402 | 48 | 493 | 1.53e-30 | 124 |
| MS.gene41005.t1 | MTR_1g108780 | 25.738 | 474 | 232 | 17 | 20 | 402 | 12 | 456 | 4.56e-26 | 110 |
| MS.gene41005.t1 | MTR_5g044670 | 26.298 | 289 | 169 | 7 | 14 | 267 | 25 | 304 | 2.04e-22 | 98.2 |
| MS.gene41005.t1 | MTR_7g050710 | 26.183 | 317 | 155 | 10 | 8 | 266 | 12 | 307 | 1.40e-18 | 86.7 |
| MS.gene41005.t1 | MTR_3g061310 | 24.490 | 294 | 163 | 9 | 9 | 264 | 12 | 284 | 1.50e-18 | 85.9 |
| MS.gene41005.t1 | MTR_7g050560 | 26.073 | 303 | 154 | 11 | 9 | 266 | 13 | 290 | 3.35e-18 | 85.5 |
| MS.gene41005.t1 | MTR_3g061340 | 23.973 | 292 | 158 | 8 | 9 | 265 | 12 | 274 | 2.89e-16 | 79.3 |
| MS.gene41005.t1 | MTR_3g061350 | 25.606 | 289 | 165 | 9 | 9 | 264 | 12 | 283 | 3.83e-16 | 79.0 |
| MS.gene41005.t1 | MTR_1g035480 | 34.783 | 161 | 57 | 5 | 14 | 142 | 26 | 170 | 9.36e-16 | 75.5 |
| MS.gene41005.t1 | MTR_1g033740 | 32.927 | 164 | 58 | 6 | 14 | 142 | 31 | 177 | 5.55e-15 | 73.6 |
| MS.gene41005.t1 | MTR_3g098790 | 25.667 | 300 | 154 | 12 | 14 | 266 | 22 | 299 | 7.95e-15 | 75.9 |
| MS.gene41005.t1 | MTR_1g035520 | 36.607 | 112 | 67 | 2 | 295 | 402 | 271 | 382 | 1.68e-14 | 75.1 |
| MS.gene41005.t1 | MTR_7g050590 | 25.000 | 296 | 155 | 10 | 21 | 266 | 2 | 280 | 6.17e-14 | 72.8 |
| MS.gene41005.t1 | MTR_4g119990 | 25.080 | 311 | 165 | 10 | 9 | 265 | 15 | 311 | 2.05e-13 | 72.0 |
| MS.gene41005.t1 | MTR_3g061320 | 23.179 | 302 | 151 | 11 | 9 | 264 | 12 | 278 | 1.63e-12 | 68.2 |
| MS.gene41005.t1 | MTR_3g061370 | 22.526 | 293 | 169 | 8 | 9 | 264 | 9 | 280 | 1.90e-12 | 68.2 |
| MS.gene41005.t1 | MTR_7g050720 | 26.220 | 328 | 150 | 12 | 9 | 266 | 10 | 315 | 5.77e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 86 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGAGGTTGGTTCGTTTC+TGG | 0.065597 | 1.3:-41067771 | None:intergenic |
| GTGTTCAACAAGAAATATTT+TGG | 0.156532 | 1.3:+41066575 | MS.gene41005:CDS |
| GAACACCGTTTGGGAATTTA+AGG | 0.181202 | 1.3:-41066558 | None:intergenic |
| ATAGTAACATTGAATGAAAT+TGG | 0.207134 | 1.3:-41067734 | None:intergenic |
| ATTATCTGTTTGTTCTAATA+AGG | 0.215815 | 1.3:+41068818 | MS.gene41005:CDS |
| TACGGGTTTGGTGAGAGTTT+TGG | 0.253800 | 1.3:+41069368 | MS.gene41005:CDS |
| AAATATTGTGGAGTTGAAAA+TGG | 0.256652 | 1.3:+41068617 | MS.gene41005:CDS |
| CGTAAGCCATAAGGCTTCTT+TGG | 0.274650 | 1.3:-41069349 | None:intergenic |
| ATCATCAACGGATTTGATAT+TGG | 0.277153 | 1.3:-41066749 | None:intergenic |
| TATTTCTCCACATAAATCTT+AGG | 0.291278 | 1.3:-41066508 | None:intergenic |
| TTAAAGGGACTGCAACAATA+AGG | 0.291725 | 1.3:+41067564 | MS.gene41005:CDS |
| TGTCCATGACAAGGTTATAA+AGG | 0.295503 | 1.3:+41067897 | MS.gene41005:intron |
| AGATTTATGTGGAGAAATAT+TGG | 0.302749 | 1.3:+41066512 | MS.gene41005:CDS |
| TTTGGGAATTTAAGGAATAT+AGG | 0.312034 | 1.3:-41066550 | None:intergenic |
| AGCCTTATGGCTTACGGGTT+TGG | 0.317074 | 1.3:+41069356 | MS.gene41005:CDS |
| CTAGTTCTTTGAACTTGCTT+TGG | 0.330347 | 1.3:-41066877 | None:intergenic |
| AAGACATTGCAGGAACTTCT+AGG | 0.350581 | 1.3:+41067943 | MS.gene41005:CDS |
| ATTTCTTGTTGAACACCGTT+TGG | 0.353826 | 1.3:-41066568 | None:intergenic |
| TTGGGAATTTAAGGAATATA+GGG | 0.355557 | 1.3:-41066549 | None:intergenic |
| GTTGCCAAAGGCTGAGTATA+TGG | 0.363514 | 1.3:+41069311 | MS.gene41005:intron |
| AAAGAAGCCTTATGGCTTAC+GGG | 0.368581 | 1.3:+41069351 | MS.gene41005:CDS |
| TTATTAGAACAAACAGATAA+TGG | 0.369349 | 1.3:-41068816 | None:intergenic |
| GTCCATGACAAGGTTATAAA+GGG | 0.373041 | 1.3:+41067898 | MS.gene41005:intron |
| TGGCAAAAGAAAAGTGAGTA+TGG | 0.382194 | 1.3:+41066903 | MS.gene41005:CDS |
| ATAATTTATTTCTAAAGTAT+TGG | 0.389854 | 1.3:-41066725 | None:intergenic |
| CTGCAGATTCAGTAAAGGTT+GGG | 0.409562 | 1.3:+41068689 | MS.gene41005:CDS |
| TTTCTTGTTGAACACCGTTT+GGG | 0.413820 | 1.3:-41066567 | None:intergenic |
| TAAAGGGACTGCAACAATAA+GGG | 0.414381 | 1.3:+41067565 | MS.gene41005:CDS |
| CGATTAAAGCTTCAGATGTT+GGG | 0.416702 | 1.3:-41067354 | None:intergenic |
| AAGATTATCCTATGAAAATC+TGG | 0.419859 | 1.3:-41066344 | None:intergenic |
| CAAAGAAGCCTTATGGCTTA+CGG | 0.421449 | 1.3:+41069350 | MS.gene41005:CDS |
| AAAACCTAGGAATTTCTTTG+AGG | 0.431350 | 1.3:-41067786 | None:intergenic |
| AAAGAATGCGAAGTGGAGAT+TGG | 0.431760 | 1.3:+41068723 | MS.gene41005:CDS |
| TTACGCCAATGGTTATTACT+TGG | 0.435703 | 1.3:+41067426 | MS.gene41005:CDS |
| GCATAACACATTCAAGGTTA+TGG | 0.436923 | 1.3:+41068441 | MS.gene41005:CDS |
| GTGTTTGATGTCTCAATTGA+AGG | 0.441650 | 1.3:+41068786 | MS.gene41005:CDS |
| AAGCTGCCAAAGAAGCCTTA+TGG | 0.442476 | 1.3:+41069343 | MS.gene41005:CDS |
| ACCAAAGGAGTTTATGAAAA+GGG | 0.442898 | 1.3:+41068584 | MS.gene41005:CDS |
| AAGTATTATGAGAGTATTTG+TGG | 0.445350 | 1.3:+41068666 | MS.gene41005:CDS |
| GTTGCCATATACTCAGCCTT+TGG | 0.447274 | 1.3:-41069315 | None:intergenic |
| CCTAGGAATTTCTTTGAGGT+TGG | 0.447970 | 1.3:-41067782 | None:intergenic |
| CAAGTTCAAAGAACTAGAAA+TGG | 0.448280 | 1.3:+41066883 | MS.gene41005:CDS |
| TGTTCTCTTGAAAATATACT+TGG | 0.449633 | 1.3:-41067530 | None:intergenic |
| AATATTGTGGAGTTGAAAAT+GGG | 0.451536 | 1.3:+41068618 | MS.gene41005:CDS |
| TCGATTAAAGCTTCAGATGT+TGG | 0.454021 | 1.3:-41067355 | None:intergenic |
| CAAAGTAGCCATGGTGAAGA+AGG | 0.465707 | 1.3:+41067321 | MS.gene41005:CDS |
| CCAACCTCAAAGAAATTCCT+AGG | 0.466549 | 1.3:+41067782 | MS.gene41005:CDS |
| CACCAAACCCGTAAGCCATA+AGG | 0.486794 | 1.3:-41069358 | None:intergenic |
| AGTGATGAAGTGAGTGATAA+GGG | 0.491546 | 1.3:+41066835 | MS.gene41005:CDS |
| GGACTCTGGAAGTGAGTTTG+AGG | 0.495977 | 1.3:+41067600 | MS.gene41005:CDS |
| GCAAATTTGAGATGATTCAA+AGG | 0.505985 | 1.3:+41067708 | MS.gene41005:CDS |
| GAGTGATAAGGGTTCGGATG+AGG | 0.506418 | 1.3:+41066846 | MS.gene41005:CDS |
| AATATCAAATCCGTTGATGA+TGG | 0.518911 | 1.3:+41066751 | MS.gene41005:CDS |
| CAATAAGGGTTGGTAAAGAA+AGG | 0.522250 | 1.3:+41067579 | MS.gene41005:CDS |
| TACCAAAGGAGTTTATGAAA+AGG | 0.523215 | 1.3:+41068583 | MS.gene41005:CDS |
| AAGTGATGAAGTGAGTGATA+AGG | 0.524193 | 1.3:+41066834 | MS.gene41005:CDS |
| GTAAAGAAGGAAGACATTGC+AGG | 0.528901 | 1.3:+41067933 | MS.gene41005:CDS |
| GATCTCTTGTGGTGTAAAGA+AGG | 0.529335 | 1.3:+41067920 | MS.gene41005:CDS |
| GGGATGTCATGAAAATATTG+TGG | 0.531604 | 1.3:+41068605 | MS.gene41005:CDS |
| GAGGGTTCCTAAGATTTATG+TGG | 0.536061 | 1.3:+41066501 | MS.gene41005:intron |
| TGTGGCTGCAGATTCAGTAA+AGG | 0.538766 | 1.3:+41068684 | MS.gene41005:CDS |
| TACAGAAGATCGTGATGAGA+TGG | 0.542693 | 1.3:+41068417 | MS.gene41005:intron |
| TGAAGTGAGTGATAAGGGTT+CGG | 0.543070 | 1.3:+41066840 | MS.gene41005:CDS |
| ATATTCCTTAAATTCCCAAA+CGG | 0.544640 | 1.3:+41066553 | MS.gene41005:CDS |
| GCTGCAGATTCAGTAAAGGT+TGG | 0.545755 | 1.3:+41068688 | MS.gene41005:CDS |
| GTCTAGGACTCTAAGAGACT+TGG | 0.546042 | 1.3:-41069406 | None:intergenic |
| CAGTAAAGAGCTAAACGTCT+AGG | 0.547169 | 1.3:-41069422 | None:intergenic |
| GATGGAGCATAACACATTCA+AGG | 0.549844 | 1.3:+41068435 | MS.gene41005:CDS |
| GGCTTCAGCACCATCATCAA+CGG | 0.558014 | 1.3:-41066761 | None:intergenic |
| GTATTTGCAGGGTGTACCAA+AGG | 0.558528 | 1.3:+41068569 | MS.gene41005:intron |
| ACTTACCAAGTAATAACCAT+TGG | 0.568490 | 1.3:-41067431 | None:intergenic |
| TGCAGATTCAGTAAAGGTTG+GGG | 0.578364 | 1.3:+41068690 | MS.gene41005:CDS |
| CCAAAGGAGTTTATGAAAAG+GGG | 0.581936 | 1.3:+41068585 | MS.gene41005:CDS |
| TATGGTGAAGAATAGAGTCC+CGG | 0.582585 | 1.3:+41068459 | MS.gene41005:CDS |
| GGTTGGTAAAGAAAGGACTC+TGG | 0.588239 | 1.3:+41067586 | MS.gene41005:CDS |
| AATCTTGTATGAGTGGTGGT+TGG | 0.588690 | 1.3:+41067642 | MS.gene41005:CDS |
| GGGACTGCAACAATAAGGGT+TGG | 0.589089 | 1.3:+41067569 | MS.gene41005:CDS |
| ATGTCACATACTTACGCCAA+TGG | 0.590674 | 1.3:+41067415 | MS.gene41005:CDS |
| TATGTGGAGAAATATTGGAA+AGG | 0.599905 | 1.3:+41066517 | MS.gene41005:CDS |
| GGTTATAAAGGGATCTCTTG+TGG | 0.601408 | 1.3:+41067909 | MS.gene41005:intron |
| ATTTATGAAAGAATGCGAAG+TGG | 0.602214 | 1.3:+41068716 | MS.gene41005:CDS |
| AGGTAGTAACAAAGTAGCCA+TGG | 0.605894 | 1.3:+41067312 | MS.gene41005:intron |
| GTTCAATCCATAGTTGCCAA+AGG | 0.615815 | 1.3:+41069299 | MS.gene41005:intron |
| TGAAAATGGGGAGAAAGTCA+TGG | 0.631530 | 1.3:+41068631 | MS.gene41005:CDS |
| TGGAATATGTTGAAATGACA+TGG | 0.667913 | 1.3:-41066324 | None:intergenic |
| ATATTGTGGAGTTGAAAATG+GGG | 0.692849 | 1.3:+41068619 | MS.gene41005:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTTTTTTTTAAATT+TGG | + | chr1.3:41068095-41068114 | MS.gene41005:intron | 0.0% |
| !!! | AAACTTATTAATGATTTTTA+TGG | + | chr1.3:41068123-41068142 | MS.gene41005:intron | 10.0% |
| !!! | ATAATTTATTTCTAAAGTAT+TGG | - | chr1.3:41066728-41066747 | None:intergenic | 10.0% |
| !!! | ATATTATTATTTCTAATTCA+CGG | - | chr1.3:41068200-41068219 | None:intergenic | 10.0% |
| !!! | CAAATATATCTATATTTTTT+GGG | + | chr1.3:41068349-41068368 | MS.gene41005:intron | 10.0% |
| !!! | TATGATAAACAAAATAATTT+TGG | + | chr1.3:41067223-41067242 | MS.gene41005:intron | 10.0% |
| !!! | TATTTTAAAGTTAAGATATT+TGG | + | chr1.3:41066700-41066719 | MS.gene41005:CDS | 10.0% |
| !!! | TCAAATATATCTATATTTTT+TGG | + | chr1.3:41068348-41068367 | MS.gene41005:intron | 10.0% |
| !!! | TTAGATTTTATTATTGTAAA+GGG | + | chr1.3:41068020-41068039 | MS.gene41005:intron | 10.0% |
| !!! | TTTAGATTTTATTATTGTAA+AGG | + | chr1.3:41068019-41068038 | MS.gene41005:intron | 10.0% |
| !!! | TTTATTTATGTTTTTTTTGA+AGG | + | chr1.3:41068219-41068238 | MS.gene41005:intron | 10.0% |
| !! | AAAATATTACAAACAATCAT+AGG | - | chr1.3:41068958-41068977 | None:intergenic | 15.0% |
| !! | AAATAATCTTTAAATTTAGC+AGG | + | chr1.3:41067292-41067311 | MS.gene41005:intron | 15.0% |
| !! | AAATATTACAAACAATCATA+GGG | - | chr1.3:41068957-41068976 | None:intergenic | 15.0% |
| !! | ACATTATAAATGAAACATAA+TGG | - | chr1.3:41066420-41066439 | None:intergenic | 15.0% |
| !! | ATTACTAATTTACTAGATTT+AGG | + | chr1.3:41066985-41067004 | MS.gene41005:intron | 15.0% |
| !! | ATTTGAATAGATTTATAGTT+AGG | - | chr1.3:41068334-41068353 | None:intergenic | 15.0% |
| !! | GACATTATAATTTCAAAAAA+AGG | - | chr1.3:41067400-41067419 | None:intergenic | 15.0% |
| !!! | AAAAAAAGGATTTTCATTAT+TGG | - | chr1.3:41067386-41067405 | None:intergenic | 15.0% |
| !!! | AAATTTTTATTTGTATTTGC+AGG | + | chr1.3:41068557-41068576 | MS.gene41005:intron | 15.0% |
| !!! | AATTTTTATTTGTATTTGCA+GGG | + | chr1.3:41068558-41068577 | MS.gene41005:intron | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | + | chr1.3:41066614-41066633 | MS.gene41005:intron | 15.0% |
| !!! | GTATTTCAAATTTAAGATTA+AGG | - | chr1.3:41068177-41068196 | None:intergenic | 15.0% |
| !!! | TATTATTATTTCTAATTCAC+GGG | - | chr1.3:41068199-41068218 | None:intergenic | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | + | chr1.3:41066615-41066634 | MS.gene41005:intron | 15.0% |
| !!! | TGATTGTTTGTAATATTTTT+TGG | + | chr1.3:41068959-41068978 | MS.gene41005:intron | 15.0% |
| !!! | TTCTTTCTTTCTTTTTTATT+TGG | + | chr1.3:41067808-41067827 | MS.gene41005:intron | 15.0% |
| !! | AGGATTAATTACATCAAATA+TGG | + | chr1.3:41068483-41068502 | MS.gene41005:intron | 20.0% |
| !! | ATAGTAACATTGAATGAAAT+TGG | - | chr1.3:41067737-41067756 | None:intergenic | 20.0% |
| !! | ATTATCTGTTTGTTCTAATA+AGG | + | chr1.3:41068818-41068837 | MS.gene41005:CDS | 20.0% |
| !! | TTATTAGAACAAACAGATAA+TGG | - | chr1.3:41068819-41068838 | None:intergenic | 20.0% |
| !!! | AACACTTGAACAATTTTAAA+GGG | + | chr1.3:41067549-41067568 | MS.gene41005:CDS | 20.0% |
| !!! | ACTTTTTAAGAGTTATTCAA+GGG | + | chr1.3:41067069-41067088 | MS.gene41005:intron | 20.0% |
| !!! | CAAGAAAATTTACTTTTGAA+TGG | - | chr1.3:41067971-41067990 | None:intergenic | 20.0% |
| !!! | GATCATAGTTTTTTTTTTGA+AGG | - | chr1.3:41069181-41069200 | None:intergenic | 20.0% |
| !!! | TACTTTTTAAGAGTTATTCA+AGG | + | chr1.3:41067068-41067087 | MS.gene41005:intron | 20.0% |
| !!! | TCAAAAGTAAATTTTCTTGA+GGG | + | chr1.3:41067972-41067991 | MS.gene41005:CDS | 20.0% |
| !!! | TGTTCAACAAGAAATATTTT+GGG | + | chr1.3:41066576-41066595 | MS.gene41005:CDS | 20.0% |
| !!! | TTAATGATTTTTATGGTTCT+TGG | + | chr1.3:41068130-41068149 | MS.gene41005:intron | 20.0% |
| !!! | TTCAAAAGTAAATTTTCTTG+AGG | + | chr1.3:41067971-41067990 | MS.gene41005:CDS | 20.0% |
| ! | AAAGAAAGAAAGAAAAACCT+AGG | - | chr1.3:41067802-41067821 | None:intergenic | 25.0% |
| ! | AAATATTGTGGAGTTGAAAA+TGG | + | chr1.3:41068617-41068636 | MS.gene41005:CDS | 25.0% |
| ! | AAGAAAAAATCTTGTATGAG+TGG | + | chr1.3:41067635-41067654 | MS.gene41005:CDS | 25.0% |
| ! | AAGATTATCCTATGAAAATC+TGG | - | chr1.3:41066347-41066366 | None:intergenic | 25.0% |
| ! | AATATTGTGGAGTTGAAAAT+GGG | + | chr1.3:41068618-41068637 | MS.gene41005:CDS | 25.0% |
| ! | AGATTTATGTGGAGAAATAT+TGG | + | chr1.3:41066512-41066531 | MS.gene41005:CDS | 25.0% |
| ! | ATATCCATATTTCAGAAACT+TGG | - | chr1.3:41066650-41066669 | None:intergenic | 25.0% |
| ! | ATATTCCTTAAATTCCCAAA+CGG | + | chr1.3:41066553-41066572 | MS.gene41005:CDS | 25.0% |
| ! | ATCATAGGGCAAAAATTTAA+AGG | - | chr1.3:41068943-41068962 | None:intergenic | 25.0% |
| ! | CTCTTAACTTTCAAATTCTT+AGG | + | chr1.3:41066670-41066689 | MS.gene41005:intron | 25.0% |
| ! | TATTTCTCCACATAAATCTT+AGG | - | chr1.3:41066511-41066530 | None:intergenic | 25.0% |
| ! | TGTTCTCTTGAAAATATACT+TGG | - | chr1.3:41067533-41067552 | None:intergenic | 25.0% |
| ! | TTAACTTTCAAATTCTTAGG+TGG | + | chr1.3:41066673-41066692 | MS.gene41005:intron | 25.0% |
| ! | TTGGGAATTTAAGGAATATA+GGG | - | chr1.3:41066552-41066571 | None:intergenic | 25.0% |
| ! | TTTGATGTAATTAATCCTAC+CGG | - | chr1.3:41068481-41068500 | None:intergenic | 25.0% |
| ! | TTTGGGAATTTAAGGAATAT+AGG | - | chr1.3:41066553-41066572 | None:intergenic | 25.0% |
| !! | AACATATTCCAGATTTTCAT+AGG | + | chr1.3:41066336-41066355 | MS.gene41005:CDS | 25.0% |
| !! | GAACACTTGAACAATTTTAA+AGG | + | chr1.3:41067548-41067567 | MS.gene41005:CDS | 25.0% |
| !! | GCTTTAAATCAAATTCTAAC+TGG | + | chr1.3:41069038-41069057 | MS.gene41005:intron | 25.0% |
| !! | GTGTTCAACAAGAAATATTT+TGG | + | chr1.3:41066575-41066594 | MS.gene41005:CDS | 25.0% |
| !! | TAAACCATTATTTGAAACAG+TGG | + | chr1.3:41067504-41067523 | MS.gene41005:intron | 25.0% |
| !! | TTTAATTTCTTTGTTGCAGA+GGG | + | chr1.3:41066483-41066502 | MS.gene41005:intron | 25.0% |
| !!! | AACTTTTTGATAGTTAGTGA+TGG | + | chr1.3:41068266-41068285 | MS.gene41005:intron | 25.0% |
| !!! | AAGTATTATGAGAGTATTTG+TGG | + | chr1.3:41068666-41068685 | MS.gene41005:CDS | 25.0% |
| !!! | TGAGTTTTCTCTCTTTATTT+TGG | + | chr1.3:41066957-41066976 | MS.gene41005:intron | 25.0% |
| !!! | TTGCAATTTTTTTGTCTGAA+AGG | + | chr1.3:41067096-41067115 | MS.gene41005:intron | 25.0% |
| !!! | TTTTAATTTCTTTGTTGCAG+AGG | + | chr1.3:41066482-41066501 | MS.gene41005:intron | 25.0% |
| !!! | TTTTTTTTGAAGGAACATAC+AGG | - | chr1.3:41069171-41069190 | None:intergenic | 25.0% |
| AAAAAATCTTGTATGAGTGG+TGG | + | chr1.3:41067638-41067657 | MS.gene41005:CDS | 30.0% | |
| AAAACCTAGGAATTTCTTTG+AGG | - | chr1.3:41067789-41067808 | None:intergenic | 30.0% | |
| ACCAAAGGAGTTTATGAAAA+GGG | + | chr1.3:41068584-41068603 | MS.gene41005:CDS | 30.0% | |
| ACTTACCAAGTAATAACCAT+TGG | - | chr1.3:41067434-41067453 | None:intergenic | 30.0% | |
| AGAAAAAGGAGAAATCAACA+AGG | - | chr1.3:41069234-41069253 | None:intergenic | 30.0% | |
| ATACAGGATCATAGTTATTG+AGG | - | chr1.3:41069155-41069174 | None:intergenic | 30.0% | |
| ATATTGTGGAGTTGAAAATG+GGG | + | chr1.3:41068619-41068638 | MS.gene41005:CDS | 30.0% | |
| ATGAACTATATGCTACATAC+AGG | - | chr1.3:41069203-41069222 | None:intergenic | 30.0% | |
| ATTTATGAAAGAATGCGAAG+TGG | + | chr1.3:41068716-41068735 | MS.gene41005:CDS | 30.0% | |
| CAAGTTCAAAGAACTAGAAA+TGG | + | chr1.3:41066883-41066902 | MS.gene41005:CDS | 30.0% | |
| GAAAAAGGAGAAATCAACAA+GGG | - | chr1.3:41069233-41069252 | None:intergenic | 30.0% | |
| GTATCCACTGTTTCAAATAA+TGG | - | chr1.3:41067511-41067530 | None:intergenic | 30.0% | |
| TACCAAAGGAGTTTATGAAA+AGG | + | chr1.3:41068583-41068602 | MS.gene41005:CDS | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | + | chr1.3:41066517-41066536 | MS.gene41005:CDS | 30.0% | |
| TTGATGTAATTAATCCTACC+GGG | - | chr1.3:41068480-41068499 | None:intergenic | 30.0% | |
| ! | AATATCAAATCCGTTGATGA+TGG | + | chr1.3:41066751-41066770 | MS.gene41005:CDS | 30.0% |
| ! | ACTTTCATGAACTTCTTTTG+TGG | - | chr1.3:41066818-41066837 | None:intergenic | 30.0% |
| ! | ATCATCAACGGATTTGATAT+TGG | - | chr1.3:41066752-41066771 | None:intergenic | 30.0% |
| ! | GCAAATTTGAGATGATTCAA+AGG | + | chr1.3:41067708-41067727 | MS.gene41005:CDS | 30.0% |
| ! | TATTTCTTTTGTCCATGACA+AGG | + | chr1.3:41067888-41067907 | MS.gene41005:intron | 30.0% |
| !! | TCAACAAGAAATATTTTGGG+TGG | + | chr1.3:41066579-41066598 | MS.gene41005:CDS | 30.0% |
| !! | TTTGCCAAGTTTCTGAAATA+TGG | + | chr1.3:41066643-41066662 | MS.gene41005:intron | 30.0% |
| AAGTGATGAAGTGAGTGATA+AGG | + | chr1.3:41066834-41066853 | MS.gene41005:CDS | 35.0% | |
| ACTACCCAACAAAAATTCTC+AGG | + | chr1.3:41066934-41066953 | MS.gene41005:CDS | 35.0% | |
| AGTGATGAAGTGAGTGATAA+GGG | + | chr1.3:41066835-41066854 | MS.gene41005:CDS | 35.0% | |
| ATCCCTTTATAACCTTGTCA+TGG | - | chr1.3:41067903-41067922 | None:intergenic | 35.0% | |
| ATTTCTTGTTGAACACCGTT+TGG | - | chr1.3:41066571-41066590 | None:intergenic | 35.0% | |
| CCAAAGGAGTTTATGAAAAG+GGG | + | chr1.3:41068585-41068604 | MS.gene41005:CDS | 35.0% | |
| CGATTAAAGCTTCAGATGTT+GGG | - | chr1.3:41067357-41067376 | None:intergenic | 35.0% | |
| CGCAACATATATTAGTGACT+TGG | - | chr1.3:41068993-41069012 | None:intergenic | 35.0% | |
| GCATAACACATTCAAGGTTA+TGG | + | chr1.3:41068441-41068460 | MS.gene41005:CDS | 35.0% | |
| GGGATGTCATGAAAATATTG+TGG | + | chr1.3:41068605-41068624 | MS.gene41005:CDS | 35.0% | |
| GTCCATGACAAGGTTATAAA+GGG | + | chr1.3:41067898-41067917 | MS.gene41005:intron | 35.0% | |
| GTGTTTGATGTCTCAATTGA+AGG | + | chr1.3:41068786-41068805 | MS.gene41005:CDS | 35.0% | |
| TAAAGGGACTGCAACAATAA+GGG | + | chr1.3:41067565-41067584 | MS.gene41005:CDS | 35.0% | |
| TCGATTAAAGCTTCAGATGT+TGG | - | chr1.3:41067358-41067377 | None:intergenic | 35.0% | |
| TGGAGAGTAATGGTGATATT+TGG | + | chr1.3:41066599-41066618 | MS.gene41005:intron | 35.0% | |
| TGGCAAAAGAAAAGTGAGTA+TGG | + | chr1.3:41066903-41066922 | MS.gene41005:CDS | 35.0% | |
| TGTCCATGACAAGGTTATAA+AGG | + | chr1.3:41067897-41067916 | MS.gene41005:intron | 35.0% | |
| TTAAAGGGACTGCAACAATA+AGG | + | chr1.3:41067564-41067583 | MS.gene41005:CDS | 35.0% | |
| TTACGAGTGGTTAATGATAC+TGG | + | chr1.3:41069257-41069276 | MS.gene41005:intron | 35.0% | |
| TTACGCCAATGGTTATTACT+TGG | + | chr1.3:41067426-41067445 | MS.gene41005:CDS | 35.0% | |
| TTTCTTGTTGAACACCGTTT+GGG | - | chr1.3:41066570-41066589 | None:intergenic | 35.0% | |
| ! | ACTCACCTGAGAATTTTTGT+TGG | - | chr1.3:41066942-41066961 | None:intergenic | 35.0% |
| ! | ACTTTCTTGACCTCTTTTTG+TGG | - | chr1.3:41066785-41066804 | None:intergenic | 35.0% |
| ! | CTAGTTCTTTGAACTTGCTT+TGG | - | chr1.3:41066880-41066899 | None:intergenic | 35.0% |
| ! | CTATGGATTGAACAGAAGAA+AGG | - | chr1.3:41069292-41069311 | None:intergenic | 35.0% |
| ! | CTCACCTGAGAATTTTTGTT+GGG | - | chr1.3:41066941-41066960 | None:intergenic | 35.0% |
| ! | TGAGAATTTTTGTTGGGTAG+TGG | - | chr1.3:41066935-41066954 | None:intergenic | 35.0% |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | + | chr1.3:41066589-41066608 | MS.gene41005:intron | 35.0% |
| !! | CAATAAGGGTTGGTAAAGAA+AGG | + | chr1.3:41067579-41067598 | MS.gene41005:CDS | 35.0% |
| AAAGAATGCGAAGTGGAGAT+TGG | + | chr1.3:41068723-41068742 | MS.gene41005:CDS | 40.0% | |
| AAGACATTGCAGGAACTTCT+AGG | + | chr1.3:41067943-41067962 | MS.gene41005:CDS | 40.0% | |
| AATCTTGTATGAGTGGTGGT+TGG | + | chr1.3:41067642-41067661 | MS.gene41005:CDS | 40.0% | |
| ACCACTCGTAAGAGAGAAAA+AGG | - | chr1.3:41069248-41069267 | None:intergenic | 40.0% | |
| AGGTAGTAACAAAGTAGCCA+TGG | + | chr1.3:41067312-41067331 | MS.gene41005:intron | 40.0% | |
| ATGTCACATACTTACGCCAA+TGG | + | chr1.3:41067415-41067434 | MS.gene41005:CDS | 40.0% | |
| CCAACCTCAAAGAAATTCCT+AGG | + | chr1.3:41067782-41067801 | MS.gene41005:CDS | 40.0% | |
| CTGCAGATTCAGTAAAGGTT+GGG | + | chr1.3:41068689-41068708 | MS.gene41005:CDS | 40.0% | |
| GAACACCGTTTGGGAATTTA+AGG | - | chr1.3:41066561-41066580 | None:intergenic | 40.0% | |
| GAGGGTTCCTAAGATTTATG+TGG | + | chr1.3:41066501-41066520 | MS.gene41005:intron | 40.0% | |
| GATCTCTTGTGGTGTAAAGA+AGG | + | chr1.3:41067920-41067939 | MS.gene41005:CDS | 40.0% | |
| GATGGAGCATAACACATTCA+AGG | + | chr1.3:41068435-41068454 | MS.gene41005:CDS | 40.0% | |
| GGTTATAAAGGGATCTCTTG+TGG | + | chr1.3:41067909-41067928 | MS.gene41005:intron | 40.0% | |
| GTAAAGAAGGAAGACATTGC+AGG | + | chr1.3:41067933-41067952 | MS.gene41005:CDS | 40.0% | |
| GTTCAATCCATAGTTGCCAA+AGG | + | chr1.3:41069299-41069318 | MS.gene41005:intron | 40.0% | |
| TACAGAAGATCGTGATGAGA+TGG | + | chr1.3:41068417-41068436 | MS.gene41005:intron | 40.0% | |
| TATGGTGAAGAATAGAGTCC+CGG | + | chr1.3:41068459-41068478 | MS.gene41005:CDS | 40.0% | |
| TGAAAATGGGGAGAAAGTCA+TGG | + | chr1.3:41068631-41068650 | MS.gene41005:CDS | 40.0% | |
| TGAAGTGAGTGATAAGGGTT+CGG | + | chr1.3:41066840-41066859 | MS.gene41005:CDS | 40.0% | |
| TGCAGATTCAGTAAAGGTTG+GGG | + | chr1.3:41068690-41068709 | MS.gene41005:CDS | 40.0% | |
| ! | AAAGAAGCCTTATGGCTTAC+GGG | + | chr1.3:41069351-41069370 | MS.gene41005:CDS | 40.0% |
| ! | CAAAGAAGCCTTATGGCTTA+CGG | + | chr1.3:41069350-41069369 | MS.gene41005:CDS | 40.0% |
| ! | CCCCTTTTCATAAACTCCTT+TGG | - | chr1.3:41068588-41068607 | None:intergenic | 40.0% |
| ! | TCCTTTTTCTCTCTTACGAG+TGG | + | chr1.3:41069244-41069263 | MS.gene41005:intron | 40.0% |
| !! | CCTAGGAATTTCTTTGAGGT+TGG | - | chr1.3:41067785-41067804 | None:intergenic | 40.0% |
| !! | TTTTCTAGCCTTCTTCACCA+TGG | - | chr1.3:41067332-41067351 | None:intergenic | 40.0% |
| AAGCTGCCAAAGAAGCCTTA+TGG | + | chr1.3:41069343-41069362 | MS.gene41005:CDS | 45.0% | |
| CAAAGTAGCCATGGTGAAGA+AGG | + | chr1.3:41067321-41067340 | MS.gene41005:CDS | 45.0% | |
| CGTAAGCCATAAGGCTTCTT+TGG | - | chr1.3:41069352-41069371 | None:intergenic | 45.0% | |
| GCTGCAGATTCAGTAAAGGT+TGG | + | chr1.3:41068688-41068707 | MS.gene41005:CDS | 45.0% | |
| GTATTTGCAGGGTGTACCAA+AGG | + | chr1.3:41068569-41068588 | MS.gene41005:intron | 45.0% | |
| GTTGCCAAAGGCTGAGTATA+TGG | + | chr1.3:41069311-41069330 | MS.gene41005:intron | 45.0% | |
| GTTGCCATATACTCAGCCTT+TGG | - | chr1.3:41069318-41069337 | None:intergenic | 45.0% | |
| TACTCAGCCTTTGGCAACTA+TGG | - | chr1.3:41069309-41069328 | None:intergenic | 45.0% | |
| TGTGGCTGCAGATTCAGTAA+AGG | + | chr1.3:41068684-41068703 | MS.gene41005:CDS | 45.0% | |
| ! | GTCTAGGACTCTAAGAGACT+TGG | - | chr1.3:41069409-41069428 | None:intergenic | 45.0% |
| !! | CTTTGAGGTTGGTTCGTTTC+TGG | - | chr1.3:41067774-41067793 | None:intergenic | 45.0% |
| !! | GGTTGGTAAAGAAAGGACTC+TGG | + | chr1.3:41067586-41067605 | MS.gene41005:CDS | 45.0% |
| !!! | ACGGGTTTGGTGAGAGTTTT+GGG | + | chr1.3:41069369-41069388 | MS.gene41005:CDS | 45.0% |
| !!! | TACGGGTTTGGTGAGAGTTT+TGG | + | chr1.3:41069368-41069387 | MS.gene41005:CDS | 45.0% |
| !!! | AAAAAAAATCATATTTTTAT+AGG | - | chr1.3:41067179-41067198 | None:intergenic | 5.0% |
| !!! | AAAAATATGATTTTTTTTTA+AGG | + | chr1.3:41067181-41067200 | MS.gene41005:intron | 5.0% |
| CACCAAACCCGTAAGCCATA+AGG | - | chr1.3:41069361-41069380 | None:intergenic | 50.0% | |
| GAGTGATAAGGGTTCGGATG+AGG | + | chr1.3:41066846-41066865 | MS.gene41005:CDS | 50.0% | |
| GGCTTCAGCACCATCATCAA+CGG | - | chr1.3:41066764-41066783 | None:intergenic | 50.0% | |
| GGGACTGCAACAATAAGGGT+TGG | + | chr1.3:41067569-41067588 | MS.gene41005:CDS | 50.0% | |
| GTGAAGAATAGAGTCCCGGT+AGG | + | chr1.3:41068463-41068482 | MS.gene41005:intron | 50.0% | |
| ! | AGCCTTATGGCTTACGGGTT+TGG | + | chr1.3:41069356-41069375 | MS.gene41005:CDS | 50.0% |
| ! | GGACTCTGGAAGTGAGTTTG+AGG | + | chr1.3:41067600-41067619 | MS.gene41005:CDS | 50.0% |
| ! | GGTGCTGAAGCCACAAAAAG+AGG | + | chr1.3:41066772-41066791 | MS.gene41005:CDS | 50.0% |
| !!! | GGTTTGGTGAGAGTTTTGGG+TGG | + | chr1.3:41069372-41069391 | MS.gene41005:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 41066326 | 41069434 | 41066326 | ID=MS.gene41005 |
| chr1.3 | mRNA | 41066326 | 41069434 | 41066326 | ID=MS.gene41005.t1;Parent=MS.gene41005 |
| chr1.3 | exon | 41066326 | 41066382 | 41066326 | ID=MS.gene41005.t1.exon1;Parent=MS.gene41005.t1 |
| chr1.3 | CDS | 41066326 | 41066382 | 41066326 | ID=cds.MS.gene41005.t1;Parent=MS.gene41005.t1 |
| chr1.3 | exon | 41066502 | 41066604 | 41066502 | ID=MS.gene41005.t1.exon2;Parent=MS.gene41005.t1 |
| chr1.3 | CDS | 41066502 | 41066604 | 41066502 | ID=cds.MS.gene41005.t1;Parent=MS.gene41005.t1 |
| chr1.3 | exon | 41066692 | 41066955 | 41066692 | ID=MS.gene41005.t1.exon3;Parent=MS.gene41005.t1 |
| chr1.3 | CDS | 41066692 | 41066955 | 41066692 | ID=cds.MS.gene41005.t1;Parent=MS.gene41005.t1 |
| chr1.3 | exon | 41067314 | 41067447 | 41067314 | ID=MS.gene41005.t1.exon4;Parent=MS.gene41005.t1 |
| chr1.3 | CDS | 41067314 | 41067447 | 41067314 | ID=cds.MS.gene41005.t1;Parent=MS.gene41005.t1 |
| chr1.3 | exon | 41067524 | 41067803 | 41067524 | ID=MS.gene41005.t1.exon5;Parent=MS.gene41005.t1 |
| chr1.3 | CDS | 41067524 | 41067803 | 41067524 | ID=cds.MS.gene41005.t1;Parent=MS.gene41005.t1 |
| chr1.3 | exon | 41067910 | 41067993 | 41067910 | ID=MS.gene41005.t1.exon6;Parent=MS.gene41005.t1 |
| chr1.3 | CDS | 41067910 | 41067993 | 41067910 | ID=cds.MS.gene41005.t1;Parent=MS.gene41005.t1 |
| chr1.3 | exon | 41068422 | 41068480 | 41068422 | ID=MS.gene41005.t1.exon7;Parent=MS.gene41005.t1 |
| chr1.3 | CDS | 41068422 | 41068480 | 41068422 | ID=cds.MS.gene41005.t1;Parent=MS.gene41005.t1 |
| chr1.3 | exon | 41068579 | 41068839 | 41068579 | ID=MS.gene41005.t1.exon8;Parent=MS.gene41005.t1 |
| chr1.3 | CDS | 41068579 | 41068839 | 41068579 | ID=cds.MS.gene41005.t1;Parent=MS.gene41005.t1 |
| chr1.3 | exon | 41069312 | 41069434 | 41069312 | ID=MS.gene41005.t1.exon9;Parent=MS.gene41005.t1 |
| chr1.3 | CDS | 41069312 | 41069434 | 41069312 | ID=cds.MS.gene41005.t1;Parent=MS.gene41005.t1 |
| Gene Sequence |
| Protein sequence |
