Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42437.t1 | RHN78223.1 | 74.5 | 447 | 94 | 7 | 1 | 438 | 1 | 436 | 4.40E-175 | 624.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42437.t1 | Q8L3W1 | 24.7 | 336 | 203 | 8 | 7 | 295 | 4 | 336 | 6.1e-16 | 87.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42437.t1 | A0A396JPN4 | 74.5 | 447 | 94 | 7 | 1 | 438 | 1 | 436 | 3.2e-175 | 624.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene42437.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42437.t1 | MTR_1g035570 | 72.912 | 443 | 77 | 5 | 1 | 440 | 1 | 403 | 0.0 | 632 |
| MS.gene42437.t1 | MTR_1g035490 | 68.155 | 336 | 81 | 8 | 104 | 433 | 15 | 330 | 2.67e-145 | 419 |
| MS.gene42437.t1 | MTR_1g035640 | 47.412 | 483 | 185 | 11 | 1 | 432 | 1 | 465 | 2.75e-133 | 394 |
| MS.gene42437.t1 | MTR_1g035620 | 48.879 | 446 | 176 | 17 | 1 | 431 | 1 | 409 | 2.31e-120 | 358 |
| MS.gene42437.t1 | MTR_1g050845 | 48.058 | 412 | 152 | 14 | 1 | 398 | 1 | 364 | 3.33e-100 | 319 |
| MS.gene42437.t1 | MTR_6g061070 | 37.307 | 453 | 238 | 15 | 14 | 430 | 27 | 469 | 2.18e-75 | 244 |
| MS.gene42437.t1 | MTR_1g035650 | 46.637 | 223 | 91 | 5 | 1 | 215 | 1 | 203 | 5.25e-55 | 183 |
| MS.gene42437.t1 | MTR_8g103940 | 27.731 | 476 | 255 | 16 | 14 | 430 | 48 | 493 | 2.66e-43 | 160 |
| MS.gene42437.t1 | MTR_1g108780 | 27.484 | 473 | 253 | 15 | 20 | 430 | 12 | 456 | 2.00e-38 | 145 |
| MS.gene42437.t1 | MTR_5g044670 | 28.713 | 303 | 199 | 8 | 14 | 310 | 25 | 316 | 4.71e-34 | 131 |
| MS.gene42437.t1 | MTR_3g061310 | 27.891 | 294 | 182 | 8 | 9 | 293 | 12 | 284 | 7.90e-32 | 124 |
| MS.gene42437.t1 | MTR_7g050560 | 29.932 | 294 | 169 | 9 | 14 | 295 | 22 | 290 | 4.42e-31 | 122 |
| MS.gene42437.t1 | MTR_7g050710 | 29.245 | 318 | 173 | 9 | 8 | 295 | 12 | 307 | 2.33e-30 | 120 |
| MS.gene42437.t1 | MTR_3g098790 | 30.333 | 300 | 169 | 10 | 14 | 295 | 22 | 299 | 5.80e-30 | 119 |
| MS.gene42437.t1 | MTR_3g061350 | 28.374 | 289 | 186 | 8 | 9 | 293 | 12 | 283 | 1.12e-28 | 115 |
| MS.gene42437.t1 | MTR_1g033740 | 40.000 | 165 | 74 | 6 | 14 | 171 | 31 | 177 | 1.43e-28 | 112 |
| MS.gene42437.t1 | MTR_1g035480 | 40.741 | 162 | 75 | 5 | 14 | 171 | 26 | 170 | 4.03e-27 | 107 |
| MS.gene42437.t1 | MTR_3g061340 | 27.241 | 290 | 178 | 11 | 9 | 293 | 12 | 273 | 1.47e-26 | 108 |
| MS.gene42437.t1 | MTR_7g050590 | 28.475 | 295 | 175 | 7 | 21 | 295 | 2 | 280 | 3.12e-26 | 108 |
| MS.gene42437.t1 | MTR_3g061370 | 27.682 | 289 | 188 | 8 | 9 | 293 | 9 | 280 | 6.53e-26 | 107 |
| MS.gene42437.t1 | MTR_3g061320 | 26.490 | 302 | 170 | 10 | 9 | 293 | 12 | 278 | 7.29e-25 | 104 |
| MS.gene42437.t1 | MTR_1g035500 | 39.073 | 151 | 89 | 2 | 14 | 162 | 34 | 183 | 2.10e-24 | 100 |
| MS.gene42437.t1 | MTR_7g050720 | 29.781 | 319 | 165 | 10 | 14 | 295 | 19 | 315 | 4.97e-24 | 102 |
| MS.gene42437.t1 | MTR_1g035510 | 44.643 | 112 | 58 | 3 | 21 | 130 | 2 | 111 | 2.37e-23 | 98.6 |
| MS.gene42437.t1 | MTR_7g050580 | 29.110 | 292 | 174 | 8 | 14 | 295 | 22 | 290 | 3.01e-23 | 100 |
| MS.gene42437.t1 | MTR_6g043890 | 27.372 | 274 | 185 | 7 | 13 | 279 | 23 | 289 | 3.50e-23 | 100 |
| MS.gene42437.t1 | MTR_1g035460 | 24.877 | 406 | 249 | 11 | 21 | 381 | 2 | 396 | 5.39e-23 | 101 |
| MS.gene42437.t1 | MTR_4g119990 | 28.065 | 310 | 184 | 11 | 9 | 293 | 15 | 310 | 1.25e-21 | 96.7 |
| MS.gene42437.t1 | MTR_1g035520 | 28.296 | 311 | 169 | 10 | 21 | 293 | 88 | 382 | 1.04e-20 | 94.4 |
| MS.gene42437.t1 | MTR_1g035520 | 39.286 | 112 | 63 | 3 | 324 | 430 | 271 | 382 | 1.31e-15 | 79.0 |
| MS.gene42437.t1 | MTR_1g035470 | 40.741 | 108 | 61 | 2 | 21 | 126 | 2 | 108 | 3.50e-20 | 87.0 |
| MS.gene42437.t1 | MTR_3g061330 | 27.237 | 257 | 166 | 8 | 9 | 261 | 12 | 251 | 1.32e-18 | 85.9 |
| MS.gene42437.t1 | MTR_3g005480 | 24.913 | 289 | 152 | 8 | 14 | 295 | 30 | 260 | 4.96e-17 | 81.3 |
| MS.gene42437.t1 | MTR_3g061290 | 34.921 | 126 | 75 | 4 | 9 | 130 | 12 | 134 | 1.82e-16 | 78.2 |
| MS.gene42437.t1 | MTR_7g050640 | 40.541 | 111 | 56 | 4 | 3 | 103 | 5 | 115 | 5.02e-13 | 65.9 |
| MS.gene42437.t1 | MTR_4g068320 | 33.333 | 135 | 80 | 4 | 7 | 131 | 4 | 138 | 1.22e-12 | 70.1 |
| MS.gene42437.t1 | MTR_1g035440 | 35.165 | 91 | 56 | 2 | 14 | 101 | 24 | 114 | 2.21e-11 | 64.3 |
| MS.gene42437.t1 | MTR_1g021400 | 24.444 | 315 | 201 | 11 | 3 | 282 | 27 | 339 | 5.16e-11 | 64.7 |
| MS.gene42437.t1 | MTR_1g034240 | 33.663 | 101 | 61 | 2 | 7 | 101 | 5 | 105 | 7.88e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42437.t1 | AT3G18990 | 26.190 | 336 | 198 | 9 | 7 | 295 | 4 | 336 | 4.92e-22 | 97.8 |
| MS.gene42437.t1 | AT3G18990 | 26.190 | 336 | 198 | 9 | 7 | 295 | 4 | 336 | 7.65e-22 | 97.1 |
Find 89 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGAGGTTGGTTCGTTTC+TGG | 0.065597 | 1.4:-46953430 | None:intergenic |
| GTGTTCAACAAGAAATATTT+TGG | 0.156532 | 1.4:+46952236 | MS.gene42437:CDS |
| GAACACCGTTTGGGAATTTA+AGG | 0.181202 | 1.4:-46952219 | None:intergenic |
| TTTGCCAAGTTTCTGAAATA+TGG | 0.185660 | 1.4:+46952304 | MS.gene42437:CDS |
| ATTATCTGTTTGTTCTAATA+AGG | 0.215815 | 1.4:+46954464 | MS.gene42437:CDS |
| GACATTATAATTTCAAAATA+AGG | 0.216590 | 1.4:-46953056 | None:intergenic |
| TCCCCAACCTTTACTGAATC+TGG | 0.228168 | 1.4:-46954337 | None:intergenic |
| ATAGTAACATTGAATGAAAT+TGG | 0.236326 | 1.4:-46953393 | None:intergenic |
| TACGGGTTTGGTGAGAGTTT+TGG | 0.253800 | 1.4:+46955021 | MS.gene42437:CDS |
| AAATATTGTGGAGTTGAAAA+TGG | 0.256652 | 1.4:+46954263 | MS.gene42437:CDS |
| CTCTTAACTTTCAAATTCTT+AGG | 0.273033 | 1.4:+46952331 | MS.gene42437:CDS |
| CGTAAGCCATAAGGCTTCTT+TGG | 0.274650 | 1.4:-46955002 | None:intergenic |
| TATCCATGACAAGGTTATAA+AGG | 0.275015 | 1.4:+46953554 | MS.gene42437:intron |
| ATCATCAACGGATTTGATAT+TGG | 0.277153 | 1.4:-46952410 | None:intergenic |
| TGGAGAGTAATGGTGATATT+TGG | 0.287546 | 1.4:+46952260 | MS.gene42437:CDS |
| TATTTCTCCACATAAATCTT+AGG | 0.291278 | 1.4:-46952169 | None:intergenic |
| TTAAAGGGACTGCAACAATA+AGG | 0.291725 | 1.4:+46953223 | MS.gene42437:CDS |
| AGATTTATGTGGAGAAATAT+TGG | 0.302749 | 1.4:+46952173 | MS.gene42437:CDS |
| TTTGGGAATTTAAGGAATAT+AGG | 0.312034 | 1.4:-46952211 | None:intergenic |
| AGCCTTATGGCTTACGGGTT+TGG | 0.317074 | 1.4:+46955009 | MS.gene42437:CDS |
| CTAGTTCTTTGAACTTGCTT+TGG | 0.330347 | 1.4:-46952538 | None:intergenic |
| AAGACATTGCAGGAACTTCT+AGG | 0.350581 | 1.4:+46953600 | MS.gene42437:CDS |
| ATTTCTTGTTGAACACCGTT+TGG | 0.353826 | 1.4:-46952229 | None:intergenic |
| TTGGGAATTTAAGGAATATA+GGG | 0.355557 | 1.4:-46952210 | None:intergenic |
| GTTGCCAAAGGCTGAGTATA+TGG | 0.363514 | 1.4:+46954964 | MS.gene42437:intron |
| AAAGAAGCCTTATGGCTTAC+GGG | 0.368581 | 1.4:+46955004 | MS.gene42437:CDS |
| TTATTAGAACAAACAGATAA+TGG | 0.369349 | 1.4:-46954462 | None:intergenic |
| ATCCATGACAAGGTTATAAA+GGG | 0.373041 | 1.4:+46953555 | MS.gene42437:intron |
| TGGCAAAAGAAAAGTGAGTA+TGG | 0.382194 | 1.4:+46952564 | MS.gene42437:CDS |
| ATAATTTATTTCTAAAGTAT+TGG | 0.389854 | 1.4:-46952386 | None:intergenic |
| CTCCAGATTCAGTAAAGGTT+GGG | 0.392342 | 1.4:+46954335 | MS.gene42437:CDS |
| GTGTTTGATGTTTCAATTGA+AGG | 0.406886 | 1.4:+46954432 | MS.gene42437:CDS |
| TTTCTTGTTGAACACCGTTT+GGG | 0.413820 | 1.4:-46952228 | None:intergenic |
| TAAAGGGACTGCAACAATAA+GGG | 0.414381 | 1.4:+46953224 | MS.gene42437:CDS |
| GCATAAAACATTCAAGGTTA+TGG | 0.414778 | 1.4:+46954087 | MS.gene42437:CDS |
| CGATTAAAGCTTCAGATGTT+GGG | 0.416702 | 1.4:-46953013 | None:intergenic |
| AAGATTATCCTATGAAAATC+TGG | 0.419859 | 1.4:-46952005 | None:intergenic |
| CAAAGAAGCCTTATGGCTTA+CGG | 0.421449 | 1.4:+46955003 | MS.gene42437:CDS |
| AAAGAATGCAAAGTGGAGAT+TGG | 0.426567 | 1.4:+46954369 | MS.gene42437:CDS |
| AAAACCTAGGAATTTCTTTG+AGG | 0.431350 | 1.4:-46953445 | None:intergenic |
| TTACGCCAATGGTTATTACT+TGG | 0.435703 | 1.4:+46953085 | MS.gene42437:CDS |
| AAGCTGCCAAAGAAGCCTTA+TGG | 0.442476 | 1.4:+46954996 | MS.gene42437:CDS |
| AAGTATTATGAGAGTATTTG+TGG | 0.445350 | 1.4:+46954312 | MS.gene42437:CDS |
| GTTGCCATATACTCAGCCTT+TGG | 0.447274 | 1.4:-46954968 | None:intergenic |
| CCTAGGAATTTCTTTGAGGT+TGG | 0.447970 | 1.4:-46953441 | None:intergenic |
| CAAGTTCAAAGAACTAGAAA+TGG | 0.448280 | 1.4:+46952544 | MS.gene42437:CDS |
| TGTTCTCTTGAAAATATACT+TGG | 0.449633 | 1.4:-46953189 | None:intergenic |
| AATATTGTGGAGTTGAAAAT+GGG | 0.451536 | 1.4:+46954264 | MS.gene42437:CDS |
| TCGATTAAAGCTTCAGATGT+TGG | 0.454021 | 1.4:-46953014 | None:intergenic |
| CAAAGTAGCCATGGTGAAGA+AGG | 0.465707 | 1.4:+46952980 | MS.gene42437:CDS |
| CCAACCTCAAAGAAATTCCT+AGG | 0.466549 | 1.4:+46953441 | MS.gene42437:CDS |
| ATATCCATATTTCAGAAACT+TGG | 0.480994 | 1.4:-46952308 | None:intergenic |
| CACCAAACCCGTAAGCCATA+AGG | 0.486794 | 1.4:-46955011 | None:intergenic |
| CCAAAGGAGTTTATGAAAAG+AGG | 0.490308 | 1.4:+46954231 | MS.gene42437:CDS |
| GGACTCTGGAAGTGAGTTTG+AGG | 0.495977 | 1.4:+46953259 | MS.gene42437:CDS |
| AGTGATGAAATGAGTGATAA+GGG | 0.502220 | 1.4:+46952496 | MS.gene42437:CDS |
| GCAAATTTGAGATGATTCAA+AGG | 0.505985 | 1.4:+46953367 | MS.gene42437:CDS |
| GTCCAAGTCTCTTAGAGTCC+TGG | 0.507244 | 1.4:+46955057 | MS.gene42437:CDS |
| AAGTGATGAAATGAGTGATA+AGG | 0.517833 | 1.4:+46952495 | MS.gene42437:CDS |
| GATGGAGCATAAAACATTCA+AGG | 0.521684 | 1.4:+46954081 | MS.gene42437:CDS |
| CAATAAGGGTTGGTAAAGAA+AGG | 0.522250 | 1.4:+46953238 | MS.gene42437:CDS |
| GTAAAGAAGGAAGACATTGC+AGG | 0.528901 | 1.4:+46953590 | MS.gene42437:CDS |
| GATCTCTTGTGGTGTAAAGA+AGG | 0.529335 | 1.4:+46953577 | MS.gene42437:CDS |
| AGGATGTCATGAAAATATTG+TGG | 0.531604 | 1.4:+46954251 | MS.gene42437:CDS |
| TTAACTTTCAAATTCTTAGG+TGG | 0.532981 | 1.4:+46952334 | MS.gene42437:CDS |
| GAGGGTTCCTAAGATTTATG+TGG | 0.536061 | 1.4:+46952162 | MS.gene42437:intron |
| ATATTCCTTAAATTCCCAAA+CGG | 0.544640 | 1.4:+46952214 | MS.gene42437:CDS |
| GCTCCAGATTCAGTAAAGGT+TGG | 0.547244 | 1.4:+46954334 | MS.gene42437:CDS |
| CAGTAAAGGGCTAAACGTCC+AGG | 0.548270 | 1.4:-46955075 | None:intergenic |
| GTCCAGGACTCTAAGAGACT+TGG | 0.552460 | 1.4:-46955059 | None:intergenic |
| GTATTTGCAGGGTGTACCAA+AGG | 0.558528 | 1.4:+46954215 | MS.gene42437:intron |
| TGTGGCTCCAGATTCAGTAA+AGG | 0.559321 | 1.4:+46954330 | MS.gene42437:CDS |
| ACTTACCAAGTAATAACCAT+TGG | 0.568490 | 1.4:-46953090 | None:intergenic |
| TACAAAAGGTCGTGATGTGA+TGG | 0.575558 | 1.4:+46954063 | MS.gene42437:intron |
| TCCAGATTCAGTAAAGGTTG+GGG | 0.580804 | 1.4:+46954336 | MS.gene42437:CDS |
| TATGGTGAAGAATAGAGTCC+CGG | 0.582585 | 1.4:+46954105 | MS.gene42437:CDS |
| GGTTGGTAAAGAAAGGACTC+TGG | 0.588239 | 1.4:+46953245 | MS.gene42437:CDS |
| AATCTTGTATGAGTGGTGGT+TGG | 0.588690 | 1.4:+46953301 | MS.gene42437:CDS |
| GGGACTGCAACAATAAGGGT+TGG | 0.589089 | 1.4:+46953228 | MS.gene42437:CDS |
| ATGTCACATACTTACGCCAA+TGG | 0.590674 | 1.4:+46953074 | MS.gene42437:CDS |
| GGCTTCAGCACAATCATCAA+CGG | 0.595487 | 1.4:-46952422 | None:intergenic |
| AGGTAGTAACAAAGTAGCCA+TGG | 0.597558 | 1.4:+46952971 | MS.gene42437:intron |
| GGTTATAAAGGGATCTCTTG+TGG | 0.601408 | 1.4:+46953566 | MS.gene42437:intron |
| ATTTATGAAAGAATGCAAAG+TGG | 0.609427 | 1.4:+46954362 | MS.gene42437:CDS |
| GTTCAATCCATAGTTGCCAA+AGG | 0.615815 | 1.4:+46954952 | MS.gene42437:intron |
| GAGTGATAAGGGTTCAGATG+AGG | 0.626065 | 1.4:+46952507 | MS.gene42437:CDS |
| TGAAAATGGGGAGAAAGTCA+TGG | 0.631530 | 1.4:+46954277 | MS.gene42437:CDS |
| TGGAATATGTTGAAATGACA+TGG | 0.667913 | 1.4:-46951985 | None:intergenic |
| ATATTGTGGAGTTGAAAATG+GGG | 0.692849 | 1.4:+46954265 | MS.gene42437:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATTATTTCAAATTCA+CGG | - | chr1.4:46953846-46953865 | None:intergenic | 10.0% |
| !! | TATGATAAACAAAATAATAT+TGG | + | chr1.4:46952883-46952902 | MS.gene42437:intron | 10.0% |
| !!! | AAATAATCTTTAAATTTTTC+AGG | + | chr1.4:46952951-46952970 | MS.gene42437:intron | 10.0% |
| !!! | ATAATTTATTTCTAAAGTAT+TGG | - | chr1.4:46952389-46952408 | None:intergenic | 10.0% |
| !!! | ATTTATTTGTTTTTTTTTGA+AGG | + | chr1.4:46953864-46953883 | MS.gene42437:intron | 10.0% |
| !!! | CAAATATATCTATATTTTTT+GGG | + | chr1.4:46953994-46954013 | MS.gene42437:intron | 10.0% |
| !!! | GTTTTTTTTTTTTTTTTTGA+AGG | - | chr1.4:46954827-46954846 | None:intergenic | 10.0% |
| !!! | TATTTTAAAGTTAAGATATT+TGG | + | chr1.4:46952361-46952380 | MS.gene42437:CDS | 10.0% |
| !!! | TCAAATATATCTATATTTTT+TGG | + | chr1.4:46953993-46954012 | MS.gene42437:intron | 10.0% |
| !!! | TTAGATTTTATTATTGTAAA+GGG | + | chr1.4:46953677-46953696 | MS.gene42437:intron | 10.0% |
| !!! | TTTAGATTTTATTATTGTAA+AGG | + | chr1.4:46953676-46953695 | MS.gene42437:intron | 10.0% |
| !! | AAAATATTACAAACAATCAT+AGG | - | chr1.4:46954604-46954623 | None:intergenic | 15.0% |
| !! | AAATATTACAAACAATCATA+GGG | - | chr1.4:46954603-46954622 | None:intergenic | 15.0% |
| !! | ACATTATAAATGAAACATAA+TGG | - | chr1.4:46952081-46952100 | None:intergenic | 15.0% |
| !! | ATTACTAATTTACTAGATTT+AGG | + | chr1.4:46952646-46952665 | MS.gene42437:intron | 15.0% |
| !! | ATTTGAATAGATTTATAGTT+AGG | - | chr1.4:46953979-46953998 | None:intergenic | 15.0% |
| !! | GACATTATAATTTCAAAATA+AGG | - | chr1.4:46953059-46953078 | None:intergenic | 15.0% |
| !! | TATTATTATTTCAAATTCAC+GGG | - | chr1.4:46953845-46953864 | None:intergenic | 15.0% |
| !!! | AAAATAAGGATTTTCATTAT+TGG | - | chr1.4:46953045-46953064 | None:intergenic | 15.0% |
| !!! | AAACTTATGAATGATTTTTA+TGG | + | chr1.4:46953769-46953788 | MS.gene42437:intron | 15.0% |
| !!! | AATTTTTTATTTGTATTTGC+AGG | + | chr1.4:46954203-46954222 | MS.gene42437:intron | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | + | chr1.4:46952275-46952294 | MS.gene42437:CDS | 15.0% |
| !!! | ATTTTTCTACATTTGATTTT+AGG | - | chr1.4:46952935-46952954 | None:intergenic | 15.0% |
| !!! | ATTTTTTATTTGTATTTGCA+GGG | + | chr1.4:46954204-46954223 | MS.gene42437:intron | 15.0% |
| !!! | GTATTTCAAATTTAAGATTA+AGG | - | chr1.4:46953823-46953842 | None:intergenic | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | + | chr1.4:46952276-46952295 | MS.gene42437:CDS | 15.0% |
| !!! | TGATTGTTTGTAATATTTTT+TGG | + | chr1.4:46954605-46954624 | MS.gene42437:intron | 15.0% |
| !!! | TTCTTTCTTTCTTTTTTATT+TGG | + | chr1.4:46953467-46953486 | MS.gene42437:intron | 15.0% |
| !! | AGGATTAATTACATCAAATA+TGG | + | chr1.4:46954129-46954148 | MS.gene42437:intron | 20.0% |
| !! | ATAGTAACATTGAATGAAAT+TGG | - | chr1.4:46953396-46953415 | None:intergenic | 20.0% |
| !! | ATTATCTGTTTGTTCTAATA+AGG | + | chr1.4:46954464-46954483 | MS.gene42437:CDS | 20.0% |
| !! | TTATTAGAACAAACAGATAA+TGG | - | chr1.4:46954465-46954484 | None:intergenic | 20.0% |
| !! | TTTATTAGAGACATTAACTA+AGG | - | chr1.4:46953147-46953166 | None:intergenic | 20.0% |
| !!! | AACACTTGAACAATTTTAAA+GGG | + | chr1.4:46953208-46953227 | MS.gene42437:CDS | 20.0% |
| !!! | ACTTTTTAAGAGTTATTCAA+GGG | + | chr1.4:46952730-46952749 | MS.gene42437:intron | 20.0% |
| !!! | CAAGAAAATTTACTTTTGAA+TGG | - | chr1.4:46953628-46953647 | None:intergenic | 20.0% |
| !!! | TACTTTTTAAGAGTTATTCA+AGG | + | chr1.4:46952729-46952748 | MS.gene42437:intron | 20.0% |
| !!! | TCAAAAGTAAATTTTCTTGA+GGG | + | chr1.4:46953629-46953648 | MS.gene42437:CDS | 20.0% |
| !!! | TGTTCAACAAGAAATATTTT+GGG | + | chr1.4:46952237-46952256 | MS.gene42437:CDS | 20.0% |
| !!! | TTCAAAAGTAAATTTTCTTG+AGG | + | chr1.4:46953628-46953647 | MS.gene42437:CDS | 20.0% |
| ! | AAAGAAAGAAAGAAAAACCT+AGG | - | chr1.4:46953461-46953480 | None:intergenic | 25.0% |
| ! | AAATATTGTGGAGTTGAAAA+TGG | + | chr1.4:46954263-46954282 | MS.gene42437:CDS | 25.0% |
| ! | AAGAAAAAATCTTGTATGAG+TGG | + | chr1.4:46953294-46953313 | MS.gene42437:CDS | 25.0% |
| ! | AAGATTATCCTATGAAAATC+TGG | - | chr1.4:46952008-46952027 | None:intergenic | 25.0% |
| ! | AATATTGTGGAGTTGAAAAT+GGG | + | chr1.4:46954264-46954283 | MS.gene42437:CDS | 25.0% |
| ! | AGATTTATGTGGAGAAATAT+TGG | + | chr1.4:46952173-46952192 | MS.gene42437:CDS | 25.0% |
| ! | ATATCCATATTTCAGAAACT+TGG | - | chr1.4:46952311-46952330 | None:intergenic | 25.0% |
| ! | ATATTCCTTAAATTCCCAAA+CGG | + | chr1.4:46952214-46952233 | MS.gene42437:CDS | 25.0% |
| ! | ATCATAGGGCAAAAATTTAA+AGG | - | chr1.4:46954589-46954608 | None:intergenic | 25.0% |
| ! | ATTTATGAAAGAATGCAAAG+TGG | + | chr1.4:46954362-46954381 | MS.gene42437:CDS | 25.0% |
| ! | CTCTTAACTTTCAAATTCTT+AGG | + | chr1.4:46952331-46952350 | MS.gene42437:CDS | 25.0% |
| ! | TATTTCTCCACATAAATCTT+AGG | - | chr1.4:46952172-46952191 | None:intergenic | 25.0% |
| ! | TGTTCTCTTGAAAATATACT+TGG | - | chr1.4:46953192-46953211 | None:intergenic | 25.0% |
| ! | TTAACTTTCAAATTCTTAGG+TGG | + | chr1.4:46952334-46952353 | MS.gene42437:CDS | 25.0% |
| ! | TTGGGAATTTAAGGAATATA+GGG | - | chr1.4:46952213-46952232 | None:intergenic | 25.0% |
| ! | TTTGATGTAATTAATCCTAC+CGG | - | chr1.4:46954127-46954146 | None:intergenic | 25.0% |
| ! | TTTGGGAATTTAAGGAATAT+AGG | - | chr1.4:46952214-46952233 | None:intergenic | 25.0% |
| !! | AACATATTCCAGATTTTCAT+AGG | + | chr1.4:46951997-46952016 | MS.gene42437:CDS | 25.0% |
| !! | GAACACTTGAACAATTTTAA+AGG | + | chr1.4:46953207-46953226 | MS.gene42437:CDS | 25.0% |
| !! | GCTTTAAATCAAATTCTAAC+TGG | + | chr1.4:46954684-46954703 | MS.gene42437:intron | 25.0% |
| !! | GTGTTCAACAAGAAATATTT+TGG | + | chr1.4:46952236-46952255 | MS.gene42437:CDS | 25.0% |
| !! | TAAACCATTATTTGAAACAG+TGG | + | chr1.4:46953163-46953182 | MS.gene42437:intron | 25.0% |
| !! | TATTTCTTTTATCCATGACA+AGG | + | chr1.4:46953545-46953564 | MS.gene42437:intron | 25.0% |
| !! | TGAATGATTTTTATGGTTCT+TGG | + | chr1.4:46953776-46953795 | MS.gene42437:intron | 25.0% |
| !! | TTTAATTTCTTTGTTGCAGA+GGG | + | chr1.4:46952144-46952163 | MS.gene42437:intron | 25.0% |
| !!! | AACTTTTTGATAGTTAGTGA+TGG | + | chr1.4:46953911-46953930 | MS.gene42437:intron | 25.0% |
| !!! | AAGTATTATGAGAGTATTTG+TGG | + | chr1.4:46954312-46954331 | MS.gene42437:CDS | 25.0% |
| !!! | TGAGTTTTCTCTCTTTATTT+TGG | + | chr1.4:46952618-46952637 | MS.gene42437:intron | 25.0% |
| !!! | TTGCAATTTTTTTGTCTGAA+AGG | + | chr1.4:46952757-46952776 | MS.gene42437:intron | 25.0% |
| !!! | TTTTAATTTCTTTGTTGCAG+AGG | + | chr1.4:46952143-46952162 | MS.gene42437:intron | 25.0% |
| !!! | TTTTTTTTGAAGGAACATAC+AGG | - | chr1.4:46954817-46954836 | None:intergenic | 25.0% |
| AAAAAATCTTGTATGAGTGG+TGG | + | chr1.4:46953297-46953316 | MS.gene42437:CDS | 30.0% | |
| AAAACCTAGGAATTTCTTTG+AGG | - | chr1.4:46953448-46953467 | None:intergenic | 30.0% | |
| AAGTGATGAAATGAGTGATA+AGG | + | chr1.4:46952495-46952514 | MS.gene42437:CDS | 30.0% | |
| ACTTACCAAGTAATAACCAT+TGG | - | chr1.4:46953093-46953112 | None:intergenic | 30.0% | |
| AGAAAAAGGAGAAATCAACA+AGG | - | chr1.4:46954887-46954906 | None:intergenic | 30.0% | |
| AGGATGTCATGAAAATATTG+TGG | + | chr1.4:46954251-46954270 | MS.gene42437:CDS | 30.0% | |
| AGTGATGAAATGAGTGATAA+GGG | + | chr1.4:46952496-46952515 | MS.gene42437:CDS | 30.0% | |
| ATACAGGATCATAGTTATTG+AGG | - | chr1.4:46954801-46954820 | None:intergenic | 30.0% | |
| ATATTGTGGAGTTGAAAATG+GGG | + | chr1.4:46954265-46954284 | MS.gene42437:CDS | 30.0% | |
| ATCCATGACAAGGTTATAAA+GGG | + | chr1.4:46953555-46953574 | MS.gene42437:intron | 30.0% | |
| ATGAACTATATGCTACATAC+AGG | - | chr1.4:46954856-46954875 | None:intergenic | 30.0% | |
| CAAGTTCAAAGAACTAGAAA+TGG | + | chr1.4:46952544-46952563 | MS.gene42437:CDS | 30.0% | |
| GAAAAAGGAGAAATCAACAA+GGG | - | chr1.4:46954886-46954905 | None:intergenic | 30.0% | |
| GCATAAAACATTCAAGGTTA+TGG | + | chr1.4:46954087-46954106 | MS.gene42437:CDS | 30.0% | |
| GTATCCACTGTTTCAAATAA+TGG | - | chr1.4:46953170-46953189 | None:intergenic | 30.0% | |
| GTGTTTGATGTTTCAATTGA+AGG | + | chr1.4:46954432-46954451 | MS.gene42437:CDS | 30.0% | |
| TATCCATGACAAGGTTATAA+AGG | + | chr1.4:46953554-46953573 | MS.gene42437:intron | 30.0% | |
| TGTGTTTATGCATGTACAAA+AGG | + | chr1.4:46954049-46954068 | MS.gene42437:intron | 30.0% | |
| TTGATGTAATTAATCCTACC+GGG | - | chr1.4:46954126-46954145 | None:intergenic | 30.0% | |
| ! | ACTTTCATGAACTTCTTTTG+TGG | - | chr1.4:46952479-46952498 | None:intergenic | 30.0% |
| ! | ATCATCAACGGATTTGATAT+TGG | - | chr1.4:46952413-46952432 | None:intergenic | 30.0% |
| ! | GCAAATTTGAGATGATTCAA+AGG | + | chr1.4:46953367-46953386 | MS.gene42437:CDS | 30.0% |
| !! | TCAACAAGAAATATTTTGGG+TGG | + | chr1.4:46952240-46952259 | MS.gene42437:CDS | 30.0% |
| !! | TTTGCCAAGTTTCTGAAATA+TGG | + | chr1.4:46952304-46952323 | MS.gene42437:CDS | 30.0% |
| AAAGAATGCAAAGTGGAGAT+TGG | + | chr1.4:46954369-46954388 | MS.gene42437:CDS | 35.0% | |
| ACTACCCAACAAAAATTCTC+AGG | + | chr1.4:46952595-46952614 | MS.gene42437:CDS | 35.0% | |
| ATCCCTTTATAACCTTGTCA+TGG | - | chr1.4:46953560-46953579 | None:intergenic | 35.0% | |
| ATTTCTTGTTGAACACCGTT+TGG | - | chr1.4:46952232-46952251 | None:intergenic | 35.0% | |
| CCAAAGGAGTTTATGAAAAG+AGG | + | chr1.4:46954231-46954250 | MS.gene42437:CDS | 35.0% | |
| CGATTAAAGCTTCAGATGTT+GGG | - | chr1.4:46953016-46953035 | None:intergenic | 35.0% | |
| CGCAACATATATTAGTGACT+TGG | - | chr1.4:46954639-46954658 | None:intergenic | 35.0% | |
| GATGGAGCATAAAACATTCA+AGG | + | chr1.4:46954081-46954100 | MS.gene42437:CDS | 35.0% | |
| TAAAGGGACTGCAACAATAA+GGG | + | chr1.4:46953224-46953243 | MS.gene42437:CDS | 35.0% | |
| TCGATTAAAGCTTCAGATGT+TGG | - | chr1.4:46953017-46953036 | None:intergenic | 35.0% | |
| TGGAGAGTAATGGTGATATT+TGG | + | chr1.4:46952260-46952279 | MS.gene42437:CDS | 35.0% | |
| TGGCAAAAGAAAAGTGAGTA+TGG | + | chr1.4:46952564-46952583 | MS.gene42437:CDS | 35.0% | |
| TTAAAGGGACTGCAACAATA+AGG | + | chr1.4:46953223-46953242 | MS.gene42437:CDS | 35.0% | |
| TTACGAGTGGTTAATGATAC+TGG | + | chr1.4:46954910-46954929 | MS.gene42437:intron | 35.0% | |
| TTACGCCAATGGTTATTACT+TGG | + | chr1.4:46953085-46953104 | MS.gene42437:CDS | 35.0% | |
| TTTCTTGTTGAACACCGTTT+GGG | - | chr1.4:46952231-46952250 | None:intergenic | 35.0% | |
| ! | ACTCACCTGAGAATTTTTGT+TGG | - | chr1.4:46952603-46952622 | None:intergenic | 35.0% |
| ! | ACTTTCTTGACCTCTTTTTG+TGG | - | chr1.4:46952446-46952465 | None:intergenic | 35.0% |
| ! | CCTCTTTTCATAAACTCCTT+TGG | - | chr1.4:46954234-46954253 | None:intergenic | 35.0% |
| ! | CTAGTTCTTTGAACTTGCTT+TGG | - | chr1.4:46952541-46952560 | None:intergenic | 35.0% |
| ! | CTATGGATTGAACAGAAGAA+AGG | - | chr1.4:46954945-46954964 | None:intergenic | 35.0% |
| ! | CTCACCTGAGAATTTTTGTT+GGG | - | chr1.4:46952602-46952621 | None:intergenic | 35.0% |
| ! | TGAGAATTTTTGTTGGGTAG+TGG | - | chr1.4:46952596-46952615 | None:intergenic | 35.0% |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | + | chr1.4:46952250-46952269 | MS.gene42437:CDS | 35.0% |
| !! | CAATAAGGGTTGGTAAAGAA+AGG | + | chr1.4:46953238-46953257 | MS.gene42437:CDS | 35.0% |
| AAGACATTGCAGGAACTTCT+AGG | + | chr1.4:46953600-46953619 | MS.gene42437:CDS | 40.0% | |
| AATCTTGTATGAGTGGTGGT+TGG | + | chr1.4:46953301-46953320 | MS.gene42437:CDS | 40.0% | |
| ACCACTCGTAAGAGAGAAAA+AGG | - | chr1.4:46954901-46954920 | None:intergenic | 40.0% | |
| AGGTAGTAACAAAGTAGCCA+TGG | + | chr1.4:46952971-46952990 | MS.gene42437:intron | 40.0% | |
| ATGTCACATACTTACGCCAA+TGG | + | chr1.4:46953074-46953093 | MS.gene42437:CDS | 40.0% | |
| CCAACCTCAAAGAAATTCCT+AGG | + | chr1.4:46953441-46953460 | MS.gene42437:CDS | 40.0% | |
| CTCCAGATTCAGTAAAGGTT+GGG | + | chr1.4:46954335-46954354 | MS.gene42437:CDS | 40.0% | |
| GAACACCGTTTGGGAATTTA+AGG | - | chr1.4:46952222-46952241 | None:intergenic | 40.0% | |
| GAGGGTTCCTAAGATTTATG+TGG | + | chr1.4:46952162-46952181 | MS.gene42437:intron | 40.0% | |
| GATCTCTTGTGGTGTAAAGA+AGG | + | chr1.4:46953577-46953596 | MS.gene42437:CDS | 40.0% | |
| GGTTATAAAGGGATCTCTTG+TGG | + | chr1.4:46953566-46953585 | MS.gene42437:intron | 40.0% | |
| GTAAAGAAGGAAGACATTGC+AGG | + | chr1.4:46953590-46953609 | MS.gene42437:CDS | 40.0% | |
| GTTCAATCCATAGTTGCCAA+AGG | + | chr1.4:46954952-46954971 | MS.gene42437:intron | 40.0% | |
| TACAAAAGGTCGTGATGTGA+TGG | + | chr1.4:46954063-46954082 | MS.gene42437:intron | 40.0% | |
| TATGGTGAAGAATAGAGTCC+CGG | + | chr1.4:46954105-46954124 | MS.gene42437:CDS | 40.0% | |
| TCCAGATTCAGTAAAGGTTG+GGG | + | chr1.4:46954336-46954355 | MS.gene42437:CDS | 40.0% | |
| TGAAAATGGGGAGAAAGTCA+TGG | + | chr1.4:46954277-46954296 | MS.gene42437:CDS | 40.0% | |
| ! | AAAGAAGCCTTATGGCTTAC+GGG | + | chr1.4:46955004-46955023 | MS.gene42437:CDS | 40.0% |
| ! | CAAAGAAGCCTTATGGCTTA+CGG | + | chr1.4:46955003-46955022 | MS.gene42437:CDS | 40.0% |
| ! | TCCTTTTTCTCTCTTACGAG+TGG | + | chr1.4:46954897-46954916 | MS.gene42437:intron | 40.0% |
| !! | CCTAGGAATTTCTTTGAGGT+TGG | - | chr1.4:46953444-46953463 | None:intergenic | 40.0% |
| !! | TTTTCTAGCCTTCTTCACCA+TGG | - | chr1.4:46952991-46953010 | None:intergenic | 40.0% |
| AAGCTGCCAAAGAAGCCTTA+TGG | + | chr1.4:46954996-46955015 | MS.gene42437:CDS | 45.0% | |
| CAAAGTAGCCATGGTGAAGA+AGG | + | chr1.4:46952980-46952999 | MS.gene42437:CDS | 45.0% | |
| CGTAAGCCATAAGGCTTCTT+TGG | - | chr1.4:46955005-46955024 | None:intergenic | 45.0% | |
| GAGTGATAAGGGTTCAGATG+AGG | + | chr1.4:46952507-46952526 | MS.gene42437:CDS | 45.0% | |
| GCTCCAGATTCAGTAAAGGT+TGG | + | chr1.4:46954334-46954353 | MS.gene42437:CDS | 45.0% | |
| GGCTTCAGCACAATCATCAA+CGG | - | chr1.4:46952425-46952444 | None:intergenic | 45.0% | |
| GTATTTGCAGGGTGTACCAA+AGG | + | chr1.4:46954215-46954234 | MS.gene42437:intron | 45.0% | |
| GTTGCCAAAGGCTGAGTATA+TGG | + | chr1.4:46954964-46954983 | MS.gene42437:intron | 45.0% | |
| GTTGCCATATACTCAGCCTT+TGG | - | chr1.4:46954971-46954990 | None:intergenic | 45.0% | |
| TACTCAGCCTTTGGCAACTA+TGG | - | chr1.4:46954962-46954981 | None:intergenic | 45.0% | |
| TCCCCAACCTTTACTGAATC+TGG | - | chr1.4:46954340-46954359 | None:intergenic | 45.0% | |
| TGTGCTGAAGCCACAAAAAG+AGG | + | chr1.4:46952433-46952452 | MS.gene42437:CDS | 45.0% | |
| TGTGGCTCCAGATTCAGTAA+AGG | + | chr1.4:46954330-46954349 | MS.gene42437:CDS | 45.0% | |
| !! | CTTTGAGGTTGGTTCGTTTC+TGG | - | chr1.4:46953433-46953452 | None:intergenic | 45.0% |
| !! | GGTTGGTAAAGAAAGGACTC+TGG | + | chr1.4:46953245-46953264 | MS.gene42437:CDS | 45.0% |
| !!! | ACGGGTTTGGTGAGAGTTTT+GGG | + | chr1.4:46955022-46955041 | MS.gene42437:CDS | 45.0% |
| !!! | TACGGGTTTGGTGAGAGTTT+TGG | + | chr1.4:46955021-46955040 | MS.gene42437:CDS | 45.0% |
| !!! | AAAAAAAATCATATTTTTAT+AGG | - | chr1.4:46952840-46952859 | None:intergenic | 5.0% |
| !!! | TAAAAATATGATTTTTTTTA+AGG | + | chr1.4:46952841-46952860 | MS.gene42437:intron | 5.0% |
| !!! | TATATATATATTTTTGAATT+TGG | + | chr1.4:46953741-46953760 | MS.gene42437:intron | 5.0% |
| CACCAAACCCGTAAGCCATA+AGG | - | chr1.4:46955014-46955033 | None:intergenic | 50.0% | |
| GGGACTGCAACAATAAGGGT+TGG | + | chr1.4:46953228-46953247 | MS.gene42437:CDS | 50.0% | |
| GTCCAAGTCTCTTAGAGTCC+TGG | + | chr1.4:46955057-46955076 | MS.gene42437:CDS | 50.0% | |
| GTGAAGAATAGAGTCCCGGT+AGG | + | chr1.4:46954109-46954128 | MS.gene42437:intron | 50.0% | |
| ! | AGCCTTATGGCTTACGGGTT+TGG | + | chr1.4:46955009-46955028 | MS.gene42437:CDS | 50.0% |
| ! | GGACTCTGGAAGTGAGTTTG+AGG | + | chr1.4:46953259-46953278 | MS.gene42437:CDS | 50.0% |
| ! | GTCCAGGACTCTAAGAGACT+TGG | - | chr1.4:46955062-46955081 | None:intergenic | 50.0% |
| !!! | GGTTTGGTGAGAGTTTTGGG+TGG | + | chr1.4:46955025-46955044 | MS.gene42437:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 46951987 | 46955087 | 46951987 | ID=MS.gene42437 |
| chr1.4 | mRNA | 46951987 | 46955087 | 46951987 | ID=MS.gene42437.t1;Parent=MS.gene42437 |
| chr1.4 | exon | 46951987 | 46952043 | 46951987 | ID=MS.gene42437.t1.exon1;Parent=MS.gene42437.t1 |
| chr1.4 | CDS | 46951987 | 46952043 | 46951987 | ID=cds.MS.gene42437.t1;Parent=MS.gene42437.t1 |
| chr1.4 | exon | 46952163 | 46952616 | 46952163 | ID=MS.gene42437.t1.exon2;Parent=MS.gene42437.t1 |
| chr1.4 | CDS | 46952163 | 46952616 | 46952163 | ID=cds.MS.gene42437.t1;Parent=MS.gene42437.t1 |
| chr1.4 | exon | 46952973 | 46953106 | 46952973 | ID=MS.gene42437.t1.exon3;Parent=MS.gene42437.t1 |
| chr1.4 | CDS | 46952973 | 46953106 | 46952973 | ID=cds.MS.gene42437.t1;Parent=MS.gene42437.t1 |
| chr1.4 | exon | 46953183 | 46953462 | 46953183 | ID=MS.gene42437.t1.exon4;Parent=MS.gene42437.t1 |
| chr1.4 | CDS | 46953183 | 46953462 | 46953183 | ID=cds.MS.gene42437.t1;Parent=MS.gene42437.t1 |
| chr1.4 | exon | 46953567 | 46953650 | 46953567 | ID=MS.gene42437.t1.exon5;Parent=MS.gene42437.t1 |
| chr1.4 | CDS | 46953567 | 46953650 | 46953567 | ID=cds.MS.gene42437.t1;Parent=MS.gene42437.t1 |
| chr1.4 | exon | 46954071 | 46954126 | 46954071 | ID=MS.gene42437.t1.exon6;Parent=MS.gene42437.t1 |
| chr1.4 | CDS | 46954071 | 46954126 | 46954071 | ID=cds.MS.gene42437.t1;Parent=MS.gene42437.t1 |
| chr1.4 | exon | 46954225 | 46954485 | 46954225 | ID=MS.gene42437.t1.exon7;Parent=MS.gene42437.t1 |
| chr1.4 | CDS | 46954225 | 46954485 | 46954225 | ID=cds.MS.gene42437.t1;Parent=MS.gene42437.t1 |
| chr1.4 | exon | 46954965 | 46955087 | 46954965 | ID=MS.gene42437.t1.exon8;Parent=MS.gene42437.t1 |
| chr1.4 | CDS | 46954965 | 46955087 | 46954965 | ID=cds.MS.gene42437.t1;Parent=MS.gene42437.t1 |
| Gene Sequence |
| Protein sequence |
