AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073652

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073652.t1 MTR_1g035570 80.101 397 67 3 1 385 1 397 0.0 621
MS.gene073652.t1 MTR_1g035490 66.049 324 63 7 104 386 15 332 1.89e-128 372
MS.gene073652.t1 MTR_1g035640 55.195 308 111 3 1 292 1 297 7.63e-109 327
MS.gene073652.t1 MTR_1g035640 43.299 97 30 1 287 383 394 465 4.43e-14 73.9
MS.gene073652.t1 MTR_1g035620 45.093 428 178 13 1 386 1 413 6.39e-106 318
MS.gene073652.t1 MTR_1g050845 44.103 390 151 12 1 349 1 364 1.34e-82 269
MS.gene073652.t1 MTR_6g061070 33.775 453 207 12 14 382 27 470 2.75e-66 218
MS.gene073652.t1 MTR_1g035650 42.308 208 102 3 1 195 1 203 1.02e-46 159
MS.gene073652.t1 MTR_5g044670 30.952 294 180 7 14 287 25 315 2.21e-36 135
MS.gene073652.t1 MTR_7g050560 35.587 281 150 10 14 275 22 290 5.60e-35 131
MS.gene073652.t1 MTR_3g098790 32.168 286 162 10 14 275 22 299 5.34e-32 123
MS.gene073652.t1 MTR_8g103940 29.967 307 170 11 14 286 48 343 6.24e-31 123
MS.gene073652.t1 MTR_7g050710 31.046 306 161 12 9 275 13 307 1.11e-29 117
MS.gene073652.t1 MTR_7g050590 31.597 288 155 10 21 275 2 280 1.15e-29 116
MS.gene073652.t1 MTR_1g035480 43.448 145 67 5 14 154 26 159 2.10e-28 110
MS.gene073652.t1 MTR_3g061310 26.429 280 184 7 9 273 12 284 4.91e-27 108
MS.gene073652.t1 MTR_7g050580 32.852 277 163 9 14 275 22 290 1.05e-26 108
MS.gene073652.t1 MTR_1g108780 29.085 306 174 10 20 292 12 307 1.52e-26 110
MS.gene073652.t1 MTR_7g050720 29.431 299 172 10 14 275 19 315 5.53e-26 107
MS.gene073652.t1 MTR_1g033740 38.514 148 72 5 14 154 31 166 8.76e-26 103
MS.gene073652.t1 MTR_3g061350 28.772 285 170 11 9 273 12 283 1.68e-25 104
MS.gene073652.t1 MTR_3g061320 27.500 280 175 10 9 273 12 278 5.30e-25 103
MS.gene073652.t1 MTR_1g035510 45.370 108 55 3 21 126 2 107 5.72e-25 102
MS.gene073652.t1 MTR_3g061340 27.106 273 180 10 9 273 12 273 1.06e-23 99.8
MS.gene073652.t1 MTR_1g035520 26.667 300 168 5 21 273 88 382 1.76e-23 100
MS.gene073652.t1 MTR_1g035520 45.161 93 47 2 294 382 291 383 1.42e-15 77.8
MS.gene073652.t1 MTR_1g035500 39.370 127 66 2 14 140 34 149 5.08e-23 95.5
MS.gene073652.t1 MTR_1g035460 24.430 307 185 6 21 288 2 300 3.77e-22 97.4
MS.gene073652.t1 MTR_3g061370 26.978 278 184 11 9 273 9 280 4.89e-22 95.1
MS.gene073652.t1 MTR_1g035470 41.176 102 58 2 21 122 2 101 2.07e-21 89.7
MS.gene073652.t1 MTR_4g119990 26.821 302 178 11 9 273 15 310 8.84e-21 93.2
MS.gene073652.t1 MTR_3g061290 30.952 168 110 3 9 172 12 177 1.38e-19 86.7
MS.gene073652.t1 MTR_6g043890 25.926 270 178 7 13 261 23 291 2.78e-19 88.6
MS.gene073652.t1 MTR_3g061330 33.333 123 78 2 9 127 12 134 2.36e-18 84.3
MS.gene073652.t1 MTR_3g005480 24.907 269 157 9 14 275 30 260 3.97e-14 72.4
MS.gene073652.t1 MTR_7g050640 41.441 111 55 4 3 103 5 115 1.25e-13 67.4
MS.gene073652.t1 MTR_4g068320 36.634 101 58 2 7 101 4 104 1.03e-12 69.7
MS.gene073652.t1 MTR_3g005420 25.271 277 156 10 14 276 298 537 2.22e-12 68.9
MS.gene073652.t1 MTR_5g070440 23.507 268 172 8 14 276 30 269 4.05e-12 66.6
MS.gene073652.t1 MTR_1g034240 33.333 111 67 3 7 110 5 115 1.72e-11 65.9
MS.gene073652.t1 MTR_3g005460 24.818 274 163 9 14 273 271 515 4.08e-11 64.7
MS.gene073652.t1 MTR_3g061220 29.310 116 69 3 9 122 12 116 4.19e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073652.t1 AT3G18990 24.779 339 185 9 7 278 4 339 1.27e-18 87.0
MS.gene073652.t1 AT3G18990 25.000 336 182 9 7 275 4 336 1.82e-18 86.3

Find 77 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACACCATTTGGAAATTTA+AGG 0.138162 1.1:+35257900 None:intergenic
GTGTTCAACAAGAAATATTT+TGG 0.149501 1.1:-35257883 MS.gene073652:CDS
CTTTGGGATTGCTTCGTTTC+CGG 0.165431 1.1:+35256754 None:intergenic
TTTGCAAAGCCTTTCAAATA+TGG 0.200041 1.1:-35257815 MS.gene073652:CDS
TTAAAACCTTGTAGTTTCTT+TGG 0.217113 1.1:+35256737 None:intergenic
TATTTCTCCACATATTTCTT+TGG 0.248757 1.1:+35257950 None:intergenic
ATTGTCCTTTGAGCTTTCTT+TGG 0.254871 1.1:+35257593 None:intergenic
AAGGAGTGTGGAGGTTAGTT+TGG 0.266521 1.1:-35256921 MS.gene073652:CDS
TGGAGAGAAATGGTGATATT+TGG 0.267670 1.1:-35257859 MS.gene073652:CDS
TTTGGAAATTTAAGGAATAT+AGG 0.269064 1.1:+35257908 None:intergenic
TTAATGGAACTGTAACAATA+AGG 0.273629 1.1:-35256955 MS.gene073652:CDS
TTCATCAACTGATTTGATAT+TGG 0.273749 1.1:+35257709 None:intergenic
AGAAATATGTGGAGAAATAT+TGG 0.281812 1.1:-35257946 MS.gene073652:CDS
TTGGAAATTTAAGGAATATA+GGG 0.293892 1.1:+35257909 None:intergenic
ACTTTCTTTACCTTCTTCAT+TGG 0.294226 1.1:+35257676 None:intergenic
GCATAACACATTCAAGGTTT+TGG 0.294441 1.1:-35256286 MS.gene073652:CDS
AAATATTGTGGAGTTGAAAA+TGG 0.298192 1.1:-35256114 MS.gene073652:CDS
AAAGCTCAAAGGACAATAAA+TGG 0.303877 1.1:-35257587 MS.gene073652:CDS
CTCTTAACTTTCAAATTCAT+TGG 0.314459 1.1:-35257788 MS.gene073652:CDS
TAAAACCTTGTAGTTTCTTT+GGG 0.320506 1.1:+35256738 None:intergenic
GTGGTGGTTGGAAAATATTC+AGG 0.328531 1.1:-35256865 MS.gene073652:CDS
ATTTCTTGTTGAACACCATT+TGG 0.331479 1.1:+35257890 None:intergenic
TTACAAAGAAAGATCTTGTT+TGG 0.332547 1.1:-35256888 MS.gene073652:CDS
GAGGTTAGTTTGGGGTATTA+TGG 0.335216 1.1:-35256911 MS.gene073652:CDS
AGGAGTGTGGAGGTTAGTTT+GGG 0.336910 1.1:-35256920 MS.gene073652:CDS
CATTAACAGCTTCAGATGTT+TGG 0.351304 1.1:+35257148 None:intergenic
TAATGGAACTGTAACAATAA+GGG 0.353376 1.1:-35256954 MS.gene073652:CDS
AATGGCAAGAGAAAATTCTT+AGG 0.357154 1.1:-35257569 MS.gene073652:intron
AATATTATTCTATGAAAATC+TGG 0.366274 1.1:+35258097 None:intergenic
ATAGTGACAGTGAATGAAAA+AGG 0.401426 1.1:+35256785 None:intergenic
ATAGTTTATTTCTAAAGTAT+TGG 0.406626 1.1:+35257733 None:intergenic
AGTATTCGTGGCTGCAAGTT+CGG 0.421831 1.1:-35256053 MS.gene073652:CDS
TACAAAGAAAGATCTTGTTT+GGG 0.433738 1.1:-35256887 MS.gene073652:CDS
AATATTGTGGAGTTGAAAAT+GGG 0.451536 1.1:-35256113 MS.gene073652:CDS
AAGTGATGAAGAGAGTGATA+AGG 0.461668 1.1:-35257624 MS.gene073652:CDS
AAAGAATGCAATGTGGAGAT+TGG 0.464528 1.1:-35256008 MS.gene073652:CDS
CGTGGCTGCAAGTTCGGTAA+AGG 0.465915 1.1:-35256047 MS.gene073652:CDS
CAAAGTCGCCATGGTGAAGA+AGG 0.474995 1.1:-35257181 MS.gene073652:CDS
TGTCATTATAACTTCAAAAG+AGG 0.475259 1.1:+35257119 None:intergenic
TTAACTTTCAAATTCATTGG+TGG 0.475675 1.1:-35257785 MS.gene073652:CDS
GATGAAGCATAACACATTCA+AGG 0.490908 1.1:-35256292 MS.gene073652:CDS
ATATTCCTTAAATTTCCAAA+TGG 0.494489 1.1:-35257905 MS.gene073652:CDS
TACTGTACAGAAGGTCATGA+TGG 0.501012 1.1:-35256315 MS.gene073652:intron
GATCTTGTTTGGGTGGTGGT+TGG 0.501988 1.1:-35256877 MS.gene073652:CDS
GTCATTATAACTTCAAAAGA+GGG 0.507540 1.1:+35257120 None:intergenic
AATTATTATGAGAGTATTCG+TGG 0.512630 1.1:-35256065 MS.gene073652:CDS
GATGAGGAAGCCACTGAAGA+AGG 0.517797 1.1:-35257653 MS.gene073652:CDS
AAGAGATATCCATATTTGAA+AGG 0.520085 1.1:+35257806 None:intergenic
ACTTTCTTCACCTTCTTCAG+TGG 0.520796 1.1:+35257643 None:intergenic
GGTGCTGAAGCCAATGAAGA+AGG 0.526163 1.1:-35257686 MS.gene073652:CDS
AGGATGTCATGGAAATATTG+TGG 0.527676 1.1:-35256126 MS.gene073652:CDS
CAATAAGGGTTGGTAATGAA+AGG 0.535875 1.1:-35256940 MS.gene073652:CDS
AATATCAAATCAGTTGATGA+AGG 0.540855 1.1:-35257707 MS.gene073652:CDS
AAAGAAAGATCTTGTTTGGG+TGG 0.548816 1.1:-35256884 MS.gene073652:CDS
GCTGCAAGTTCGGTAAAGGT+TGG 0.563561 1.1:-35256043 MS.gene073652:CDS
GAAAGATCTTGTTTGGGTGG+TGG 0.568994 1.1:-35256881 MS.gene073652:CDS
TTTGGTGAAGAACACAGCCC+CGG 0.573521 1.1:-35256268 MS.gene073652:intron
TGAAAATGGGGAGGAAGCCA+TGG 0.575061 1.1:-35256100 MS.gene073652:CDS
GTATTTGCAGAGTGTACCAA+AGG 0.583029 1.1:-35256162 MS.gene073652:intron
ACTGTCACTATTACTCGTGC+CGG 0.586569 1.1:-35256773 MS.gene073652:CDS
ACTTACAAAGAAATAGCCAT+TGG 0.588354 1.1:+35257086 None:intergenic
GAGGGTTCCAAAGAAATATG+TGG 0.594786 1.1:-35257957 MS.gene073652:CDS
GCAATCCCAAAGAAACTACA+AGG 0.598347 1.1:-35256743 MS.gene073652:intron
AGAAGGTAAAGAAAGTGATG+AGG 0.601536 1.1:-35257669 MS.gene073652:CDS
TGGTGGTTGGAAAATATTCA+GGG 0.603185 1.1:-35256864 MS.gene073652:CDS
ATGACACAATCTTACACCAA+TGG 0.609025 1.1:-35257102 MS.gene073652:CDS
GGTTGGTAATGAAAGGAGTG+TGG 0.615653 1.1:-35256933 MS.gene073652:CDS
TATGTGGAGAAATATTGGAA+AGG 0.617787 1.1:-35257941 MS.gene073652:CDS
GGAACTGTAACAATAAGGGT+TGG 0.627229 1.1:-35256950 MS.gene073652:CDS
TTGTGGAGTTGAAAATGGGG+AGG 0.632079 1.1:-35256109 MS.gene073652:CDS
TGGTAATGAAAGGAGTGTGG+AGG 0.642373 1.1:-35256930 MS.gene073652:CDS
AGGTTGTAACAAAGTCGCCA+TGG 0.645446 1.1:-35257190 MS.gene073652:CDS
AAATGCCAAAGAAAGCTCAA+AGG 0.663329 1.1:-35257598 MS.gene073652:CDS
ACTGTACAGAAGGTCATGAT+GGG 0.685690 1.1:-35256314 MS.gene073652:intron
GGAGTGTGGAGGTTAGTTTG+GGG 0.690363 1.1:-35256919 MS.gene073652:CDS
ATATTGTGGAGTTGAAAATG+GGG 0.692849 1.1:-35256112 MS.gene073652:CDS
ATTCATGAAAGAATGCAATG+TGG 0.698838 1.1:-35256015 MS.gene073652:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATACATATATAGTTAATT+AGG + chr1.1:35257606-35257625 None:intergenic 10.0%
!! CATTTATGATAAAAAAAATT+TGG - chr1.1:35256742-35256761 MS.gene073652:intron 10.0%
!!! ATGAATAATTTATAAGTTTT+TGG - chr1.1:35257511-35257530 MS.gene073652:intron 10.0%
!! AATATTATTCTATGAAAATC+TGG + chr1.1:35255953-35255972 None:intergenic 15.0%
!! ATTATATCTTTAAACTTTAC+AGG - chr1.1:35256837-35256856 MS.gene073652:CDS 15.0%
!!! AAATATGTTATTTTTTTGGA+AGG - chr1.1:35256700-35256719 MS.gene073652:intron 15.0%
!!! AGTTTTTAATAGTTAGTAAT+TGG - chr1.1:35257538-35257557 MS.gene073652:intron 15.0%
!!! ATAGTTTATTTCTAAAGTAT+TGG + chr1.1:35256317-35256336 None:intergenic 15.0%
!!! CAAATATCTCTAAATTTTTT+GGG - chr1.1:35257668-35257687 MS.gene073652:CDS 15.0%
!!! TATTTTAAGGTTAAGATATT+TGG - chr1.1:35256289-35256308 MS.gene073652:CDS 15.0%
!!! TCAAATATCTCTAAATTTTT+TGG - chr1.1:35257667-35257686 MS.gene073652:CDS 15.0%
!!! TTTTATTTAATTAATCCTAC+CGG + chr1.1:35257801-35257820 None:intergenic 15.0%
!! AGAAATCATACATTAACAAT+AGG + chr1.1:35256054-35256073 None:intergenic 20.0%
!! ATATTCCTTAAATTTCCAAA+TGG - chr1.1:35256142-35256161 MS.gene073652:CDS 20.0%
!! GAAATCATACATTAACAATA+GGG + chr1.1:35256053-35256072 None:intergenic 20.0%
!! TTGGAAATTTAAGGAATATA+GGG + chr1.1:35256141-35256160 None:intergenic 20.0%
!! TTTATTTAATTAATCCTACC+GGG + chr1.1:35257800-35257819 None:intergenic 20.0%
!! TTTGGAAATTTAAGGAATAT+AGG + chr1.1:35256142-35256161 None:intergenic 20.0%
!!! ATATTTGGTTTCAAAAAAAC+TGG - chr1.1:35256203-35256222 MS.gene073652:intron 20.0%
!!! GAAAACTTGAAAGATTTTAA+TGG - chr1.1:35257076-35257095 MS.gene073652:intron 20.0%
!!! TATTTGGTTTCAAAAAAACT+GGG - chr1.1:35256204-35256223 MS.gene073652:intron 20.0%
!!! TGTTCAACAAGAAATATTTT+GGG - chr1.1:35256165-35256184 MS.gene073652:intron 20.0%
! AAATATTGTGGAGTTGAAAA+TGG - chr1.1:35257933-35257952 MS.gene073652:CDS 25.0%
! AACTTAATCCTACATAAGTT+AGG + chr1.1:35257564-35257583 None:intergenic 25.0%
! AAGAGATATCCATATTTGAA+AGG + chr1.1:35256244-35256263 None:intergenic 25.0%
! AATATTGTGGAGTTGAAAAT+GGG - chr1.1:35257934-35257953 MS.gene073652:CDS 25.0%
! AGAAATATGTGGAGAAATAT+TGG - chr1.1:35256101-35256120 MS.gene073652:CDS 25.0%
! CCAAAGGAATTTATGAAAAA+AGG - chr1.1:35257901-35257920 MS.gene073652:CDS 25.0%
! CTCTTAACTTTCAAATTCAT+TGG - chr1.1:35256259-35256278 MS.gene073652:intron 25.0%
! GAAAATTCTTAGGTAAGTTT+AGG - chr1.1:35256488-35256507 MS.gene073652:intron 25.0%
! GTCATTATAACTTCAAAAGA+GGG + chr1.1:35256930-35256949 None:intergenic 25.0%
! TAAAACCTTGTAGTTTCTTT+GGG + chr1.1:35257312-35257331 None:intergenic 25.0%
! TAATGGAACTGTAACAATAA+GGG - chr1.1:35257093-35257112 MS.gene073652:CDS 25.0%
! TATTTCTCCACATATTTCTT+TGG + chr1.1:35256100-35256119 None:intergenic 25.0%
! TGTCATTATAACTTCAAAAG+AGG + chr1.1:35256931-35256950 None:intergenic 25.0%
! TTAAAACCTTGTAGTTTCTT+TGG + chr1.1:35257313-35257332 None:intergenic 25.0%
! TTAACTTTCAAATTCATTGG+TGG - chr1.1:35256262-35256281 MS.gene073652:intron 25.0%
! TTAATGGAACTGTAACAATA+AGG - chr1.1:35257092-35257111 MS.gene073652:CDS 25.0%
! TTACAAAGAAAGATCTTGTT+TGG - chr1.1:35257159-35257178 MS.gene073652:CDS 25.0%
! TTATTTAATTAATCCTACCG+GGG + chr1.1:35257799-35257818 None:intergenic 25.0%
! TTTATGAAAAAAGGATGTCA+TGG - chr1.1:35257910-35257929 MS.gene073652:CDS 25.0%
!! GTGTTCAACAAGAAATATTT+TGG - chr1.1:35256164-35256183 MS.gene073652:intron 25.0%
!! TACAAAGAAAGATCTTGTTT+GGG - chr1.1:35257160-35257179 MS.gene073652:CDS 25.0%
!!! AACTTTTAAGAGTTATTCCA+TGG - chr1.1:35256577-35256596 MS.gene073652:intron 25.0%
!!! AATATCAAATCAGTTGATGA+AGG - chr1.1:35256340-35256359 MS.gene073652:intron 25.0%
!!! AATTATTATGAGAGTATTCG+TGG - chr1.1:35257982-35258001 MS.gene073652:intron 25.0%
!!! CCTTTTTTCATAAATTCCTT+TGG + chr1.1:35257904-35257923 None:intergenic 25.0%
!!! TTCATCAACTGATTTGATAT+TGG + chr1.1:35256341-35256360 None:intergenic 25.0%
AAAGCTCAAAGGACAATAAA+TGG - chr1.1:35256460-35256479 MS.gene073652:intron 30.0%
AATGGCAAGAGAAAATTCTT+AGG - chr1.1:35256478-35256497 MS.gene073652:intron 30.0%
ACTTACAAAGAAATAGCCAT+TGG + chr1.1:35256964-35256983 None:intergenic 30.0%
ACTTTCTTTACCTTCTTCAT+TGG + chr1.1:35256374-35256393 None:intergenic 30.0%
ATAGTGACAGTGAATGAAAA+AGG + chr1.1:35257265-35257284 None:intergenic 30.0%
ATATTGTGGAGTTGAAAATG+GGG - chr1.1:35257935-35257954 MS.gene073652:CDS 30.0%
ATTCATGAAAGAATGCAATG+TGG - chr1.1:35258032-35258051 MS.gene073652:intron 30.0%
ATTTCTTGTTGAACACCATT+TGG + chr1.1:35256160-35256179 None:intergenic 30.0%
GAAAAAATCACAACAAACCA+TGG + chr1.1:35256597-35256616 None:intergenic 30.0%
GAACACCATTTGGAAATTTA+AGG + chr1.1:35256150-35256169 None:intergenic 30.0%
TATGTGGAGAAATATTGGAA+AGG - chr1.1:35256106-35256125 MS.gene073652:CDS 30.0%
TCTGAAAGCTTGTAAATCTA+AGG - chr1.1:35256617-35256636 MS.gene073652:intron 30.0%
TTTGCAAAGCCTTTCAAATA+TGG - chr1.1:35256232-35256251 MS.gene073652:intron 30.0%
! AGTGTCTTGAAAATCGTTTT+TGG - chr1.1:35256650-35256669 MS.gene073652:intron 30.0%
! TAAACCATGATTTGAAACAG+TGG - chr1.1:35257032-35257051 MS.gene073652:intron 30.0%
! TTTTCTCTTGAAAACTCACT+TGG + chr1.1:35257061-35257080 None:intergenic 30.0%
!! CATTGGTGGATCATATTTTA+AGG - chr1.1:35256276-35256295 MS.gene073652:CDS 30.0%
!! TAATTCACTTTTACGAACCA+TGG + chr1.1:35257967-35257986 None:intergenic 30.0%
!! TCAACAAGAAATATTTTGGG+TGG - chr1.1:35256168-35256187 MS.gene073652:intron 30.0%
AAAGAATGCAATGTGGAGAT+TGG - chr1.1:35258039-35258058 MS.gene073652:intron 35.0%
AAATGCCAAAGAAAGCTCAA+AGG - chr1.1:35256449-35256468 MS.gene073652:intron 35.0%
AAGTGATGAAGAGAGTGATA+AGG - chr1.1:35256423-35256442 MS.gene073652:intron 35.0%
AGAAGGTAAAGAAAGTGATG+AGG - chr1.1:35256378-35256397 MS.gene073652:intron 35.0%
AGGATGTCATGGAAATATTG+TGG - chr1.1:35257921-35257940 MS.gene073652:CDS 35.0%
ATGACACAATCTTACACCAA+TGG - chr1.1:35256945-35256964 MS.gene073652:CDS 35.0%
ATTGTCCTTTGAGCTTTCTT+TGG + chr1.1:35256457-35256476 None:intergenic 35.0%
CATTAACAGCTTCAGATGTT+TGG + chr1.1:35256902-35256921 None:intergenic 35.0%
CTGAATTTCTTTGTTGCAGA+GGG - chr1.1:35256072-35256091 MS.gene073652:CDS 35.0%
GATGAAGCATAACACATTCA+AGG - chr1.1:35257755-35257774 MS.gene073652:CDS 35.0%
GTAACCACTGTTTCAAATCA+TGG + chr1.1:35257039-35257058 None:intergenic 35.0%
TCTGAATTTCTTTGTTGCAG+AGG - chr1.1:35256071-35256090 MS.gene073652:CDS 35.0%
TGGAGAGAAATGGTGATATT+TGG - chr1.1:35256188-35256207 MS.gene073652:intron 35.0%
TGGTGGTTGGAAAATATTCA+GGG - chr1.1:35257183-35257202 MS.gene073652:CDS 35.0%
TTATGCTTGTACTGTACAGA+AGG - chr1.1:35257723-35257742 MS.gene073652:CDS 35.0%
! AAAGAAAGATCTTGTTTGGG+TGG - chr1.1:35257163-35257182 MS.gene073652:CDS 35.0%
! GCATAACACATTCAAGGTTT+TGG - chr1.1:35257761-35257780 MS.gene073652:CDS 35.0%
! GTAATTGGCCTAACTTATGT+AGG - chr1.1:35257553-35257572 MS.gene073652:intron 35.0%
!! ATATTTTGGGTGGAGAGAAA+TGG - chr1.1:35256178-35256197 MS.gene073652:intron 35.0%
!! CAATAAGGGTTGGTAATGAA+AGG - chr1.1:35257107-35257126 MS.gene073652:CDS 35.0%
ACTGTACAGAAGGTCATGAT+GGG - chr1.1:35257733-35257752 MS.gene073652:CDS 40.0%
ACTTTCTTCACCTTCTTCAG+TGG + chr1.1:35256407-35256426 None:intergenic 40.0%
GAGGGTTCCAAAGAAATATG+TGG - chr1.1:35256090-35256109 MS.gene073652:CDS 40.0%
GCAATCCCAAAGAAACTACA+AGG - chr1.1:35257304-35257323 MS.gene073652:intron 40.0%
GGAACTGTAACAATAAGGGT+TGG - chr1.1:35257097-35257116 MS.gene073652:CDS 40.0%
GTATTTGCAGAGTGTACCAA+AGG - chr1.1:35257885-35257904 MS.gene073652:CDS 40.0%
GTGGTGGTTGGAAAATATTC+AGG - chr1.1:35257182-35257201 MS.gene073652:CDS 40.0%
TACTGTACAGAAGGTCATGA+TGG - chr1.1:35257732-35257751 MS.gene073652:CDS 40.0%
!! GAGGTTAGTTTGGGGTATTA+TGG - chr1.1:35257136-35257155 MS.gene073652:CDS 40.0%
!! TTTTCTAGCCTTCTTCACCA+TGG + chr1.1:35256877-35256896 None:intergenic 40.0%
ACTGTCACTATTACTCGTGC+CGG - chr1.1:35257274-35257293 MS.gene073652:intron 45.0%
AGGTTGTAACAAAGTCGCCA+TGG - chr1.1:35256857-35256876 MS.gene073652:CDS 45.0%
AGTATTCGTGGCTGCAAGTT+CGG - chr1.1:35257994-35258013 MS.gene073652:intron 45.0%
TTGTGGAGTTGAAAATGGGG+AGG - chr1.1:35257938-35257957 MS.gene073652:CDS 45.0%
! AAGGAGTGTGGAGGTTAGTT+TGG - chr1.1:35257126-35257145 MS.gene073652:CDS 45.0%
! GAAAGATCTTGTTTGGGTGG+TGG - chr1.1:35257166-35257185 MS.gene073652:CDS 45.0%
! TGGTAATGAAAGGAGTGTGG+AGG - chr1.1:35257117-35257136 MS.gene073652:CDS 45.0%
!! AGGAGTGTGGAGGTTAGTTT+GGG - chr1.1:35257127-35257146 MS.gene073652:CDS 45.0%
!! CTTTGGGATTGCTTCGTTTC+CGG + chr1.1:35257296-35257315 None:intergenic 45.0%
!! GGTTGGTAATGAAAGGAGTG+TGG - chr1.1:35257114-35257133 MS.gene073652:CDS 45.0%
!!! AATTAAAAAAGTTTTTAATT+TGG - chr1.1:35257477-35257496 MS.gene073652:intron 5.0%
!!! ATAAAAATATGTTATTTTTT+TGG - chr1.1:35256696-35256715 MS.gene073652:intron 5.0%
CAAAGTCGCCATGGTGAAGA+AGG - chr1.1:35256866-35256885 MS.gene073652:CDS 50.0%
GATGAGGAAGCCACTGAAGA+AGG - chr1.1:35256394-35256413 MS.gene073652:intron 50.0%
GCTGCAAGTTCGGTAAAGGT+TGG - chr1.1:35258004-35258023 MS.gene073652:intron 50.0%
TGAAAATGGGGAGGAAGCCA+TGG - chr1.1:35257947-35257966 MS.gene073652:CDS 50.0%
TTTGGTGAAGAACACAGCCC+CGG - chr1.1:35257779-35257798 MS.gene073652:CDS 50.0%
! GATCTTGTTTGGGTGGTGGT+TGG - chr1.1:35257170-35257189 MS.gene073652:CDS 50.0%
! GGTGCTGAAGCCAATGAAGA+AGG - chr1.1:35256361-35256380 MS.gene073652:intron 50.0%
!! GGAGTGTGGAGGTTAGTTTG+GGG - chr1.1:35257128-35257147 MS.gene073652:CDS 50.0%
CGTGGCTGCAAGTTCGGTAA+AGG - chr1.1:35258000-35258019 MS.gene073652:intron 55.0%
GTGAAGAACACAGCCCCGGT+AGG - chr1.1:35257783-35257802 MS.gene073652:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 35255932 35258137 35255932 ID=MS.gene073652
chr1.1 mRNA 35255932 35258137 35255932 ID=MS.gene073652.t1;Parent=MS.gene073652
chr1.1 exon 35258081 35258137 35258081 ID=MS.gene073652.t1.exon1;Parent=MS.gene073652.t1
chr1.1 CDS 35258081 35258137 35258081 ID=cds.MS.gene073652.t1;Parent=MS.gene073652.t1
chr1.1 exon 35257570 35257978 35257570 ID=MS.gene073652.t1.exon2;Parent=MS.gene073652.t1
chr1.1 CDS 35257570 35257978 35257570 ID=cds.MS.gene073652.t1;Parent=MS.gene073652.t1
chr1.1 exon 35257092 35257210 35257092 ID=MS.gene073652.t1.exon3;Parent=MS.gene073652.t1
chr1.1 CDS 35257092 35257210 35257092 ID=cds.MS.gene073652.t1;Parent=MS.gene073652.t1
chr1.1 exon 35256744 35257017 35256744 ID=MS.gene073652.t1.exon4;Parent=MS.gene073652.t1
chr1.1 CDS 35256744 35257017 35256744 ID=cds.MS.gene073652.t1;Parent=MS.gene073652.t1
chr1.1 exon 35256269 35256327 35256269 ID=MS.gene073652.t1.exon5;Parent=MS.gene073652.t1
chr1.1 CDS 35256269 35256327 35256269 ID=cds.MS.gene073652.t1;Parent=MS.gene073652.t1
chr1.1 exon 35255932 35256174 35255932 ID=MS.gene073652.t1.exon6;Parent=MS.gene073652.t1
chr1.1 CDS 35255932 35256174 35255932 ID=cds.MS.gene073652.t1;Parent=MS.gene073652.t1
Gene Sequence

>MS.gene073652

ATGTCATTTCAACATGTTCCAGATTTTCATAGAATAATATTGCAAGATAAGAAACTTGTAAGTCTATTACAAATAATTATATTGCATATTTTATATTATGTTTCATTTATGCTGTAAACCCTATTGTTAATGTATGATTTCTGAATTTCTTTGTTGCAGAGGGTTCCAAAGAAATATGTGGAGAAATATTGGAAAGGAATATCAAACCCTATATTCCTTAAATTTCCAAATGGTGTTCAACAAGAAATATTTTGGGTGGAGAGAAATGGTGATATTTGGTTTCAAAAAAACTGGGAAAGTTTTGCAAAGCCTTTCAAATATGGATATCTCTTAACTTTCAAATTCATTGGTGGATCATATTTTAAGGTTAAGATATTTGGTGCCAATACTTTAGAAATAAACTATGCCAATATCAAATCAGTTGATGAAGGTGCTGAAGCCAATGAAGAAGGTAAAGAAAGTGATGAGGAAGCCACTGAAGAAGGTGAAGAAAGTGATGAAGAGAGTGATAAGGTTGAAATGCCAAAGAAAGCTCAAAGGACAATAAATGGCAAGAGAAAATTCTTAGGTAAGTTTAGGCTTGTCTGTTACTCTATTTATTTTTTTAAACAAAAATCATTAGTTTTTATAGAAATAATTGCTTTTAACTTTTAAGAGTTATTCCATGGTTTGTTGTGATTTTTTCTCTGAAAGCTTGTAAATCTAAGGAAGAAAAAAAAGTGTCTTGAAAATCGTTTTTGGAAGCATTGTTAGATACTTTTTCTATAAAAATATGTTATTTTTTTGGAAGGAAAAATATGTGATTTTTATCATTTATGATAAAAAAAATTTGGTTTTTTAAAATCGTTTGAAAATAATCTCTAAATCAAATGTATGATAAATAGTTAATGTAAACAAAATAGATCATTATATCTTTAAACTTTACAGGTTGTAACAAAGTCGCCATGGTGAAGAAGGCTAGAAAATACCAAACATCTGAAGCTGTTAATGAGAATCCCTCTTTTGAAGTTATAATGACACAATCTTACACCAATGGCTATTTCTTTGTAAGTTTTCTATACAAAGTATCTAATAAGTTTAGCTTTAATTAATATCTCTAATAAACCATGATTTGAAACAGTGGTTACCAAGTGAGTTTTCAAGAGAAAACTTGAAAGATTTTAATGGAACTGTAACAATAAGGGTTGGTAATGAAAGGAGTGTGGAGGTTAGTTTGGGGTATTATGGTTACAAAGAAAGATCTTGTTTGGGTGGTGGTTGGAAAATATTCAGGGAAAAATATAATTTGCAAGTTGACGATGTTTGTAAATTTGAGATGATTAGACAGAGACCTTTTTCATTCACTGTCACTATTACTCGTGCCGGAAACGAAGCAATCCCAAAGAAACTACAAGGTTTTAATTCTTTCTTTTTCTTTTATTTGCTTTTTTGTATGTTATCATGTTTTTATTTGATAAATTATATTATTCTAACTTTTTTAAAGTTTATAGATTTTATCATTGTAAATGACTCTTATATATATGTAATTTTTAAAATTGTTCTGAGAATTAAAAAAGTTTTTAATTTGGTCTGCAAACATATGAATAATTTATAAGTTTTTGGACTAAGTTTTTAATAGTTAGTAATTGGCCTAACTTATGTAGGATTAAGTTTATTTTTTTTAGTTTAAAACCTAATTAACTATATATGTATATGTTTAAGTTCATACTTGAAATTTTTTAGCTCAAAAGTATATTCAAATATCTCTAAATTTTTTGGGTGTTATAAAATTTAGACGATATCATTTTGTATTTATGCTTGTACTGTACAGAAGGTCATGATGGGATGAAGCATAACACATTCAAGGTTTTGGTGAAGAACACAGCCCCGGTAGGATTAATTAAATAAAATATAGTTACATATATAGATAGAAATGTTAGAACTACAAAAAATAAATAAATGATATTTTTGTTTGTATTTGCAGAGTGTACCAAAGGAATTTATGAAAAAAGGATGTCATGGAAATATTGTGGAGTTGAAAATGGGGAGGAAGCCATGGTTCGTAAAAGTGAATTATTATGAGAGTATTCGTGGCTGCAAGTTCGGTAAAGGTTGGACAAAATTCATGAAAGAATGCAATGTGGAGATTGGAGATACTTGTCTCTTTAAGTTGATTGATGAGAGAAAATTTGTGTTTGATGTTTCAATTGTTGCAAGAAACCATTAG
Protein sequence

>MS.gene073652.t1

MSFQHVPDFHRIILQDKKLRVPKKYVEKYWKGISNPIFLKFPNGVQQEIFWVERNGDIWFQKNWESFAKPFKYGYLLTFKFIGGSYFKVKIFGANTLEINYANIKSVDEGAEANEEGKESDEEATEEGEESDEESDKVEMPKKAQRTINGKRKFLGCNKVAMVKKARKYQTSEAVNENPSFEVIMTQSYTNGYFFWLPSEFSRENLKDFNGTVTIRVGNERSVEVSLGYYGYKERSCLGGGWKIFREKYNLQVDDVCKFEMIRQRPFSFTVTITRAGNEAIPKKLQEGHDGMKHNTFKVLVKNTAPSVPKEFMKKGCHGNIVELKMGRKPWFVKVNYYESIRGCKFGKGWTKFMKECNVEIGDTCLFKLIDERKFVFDVSIVARNH