AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene040688

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040688.t1 MTR_1g035570 81.360 397 62 3 1 385 1 397 0.0 633
MS.gene040688.t1 MTR_1g035490 66.358 324 62 7 104 386 15 332 1.52e-130 378
MS.gene040688.t1 MTR_1g035640 53.776 331 113 5 1 315 1 307 1.46e-111 334
MS.gene040688.t1 MTR_1g035640 44.330 97 29 1 287 383 394 465 1.16e-14 75.5
MS.gene040688.t1 MTR_1g035620 45.047 424 184 14 1 386 1 413 1.92e-106 319
MS.gene040688.t1 MTR_1g050845 44.615 390 149 12 1 349 1 364 1.27e-84 274
MS.gene040688.t1 MTR_6g061070 33.556 450 212 11 14 382 27 470 4.30e-66 217
MS.gene040688.t1 MTR_1g035650 42.788 208 101 3 1 195 1 203 6.02e-48 162
MS.gene040688.t1 MTR_5g044670 29.392 296 182 6 14 287 25 315 1.13e-35 133
MS.gene040688.t1 MTR_7g050560 35.507 276 157 9 14 275 22 290 3.45e-35 132
MS.gene040688.t1 MTR_3g098790 32.746 284 163 8 14 275 22 299 3.30e-33 127
MS.gene040688.t1 MTR_8g103940 28.896 308 172 11 14 286 48 343 1.27e-31 125
MS.gene040688.t1 MTR_7g050590 32.753 287 153 10 21 275 2 280 1.29e-31 121
MS.gene040688.t1 MTR_7g050710 31.270 307 159 11 9 275 13 307 2.74e-30 119
MS.gene040688.t1 MTR_3g061310 28.214 280 179 8 9 273 12 284 2.23e-28 112
MS.gene040688.t1 MTR_1g035480 43.151 146 68 5 14 155 26 160 2.84e-28 109
MS.gene040688.t1 MTR_7g050580 33.333 285 151 10 14 275 22 290 3.03e-28 113
MS.gene040688.t1 MTR_1g108780 29.508 305 174 10 20 292 12 307 1.74e-27 113
MS.gene040688.t1 MTR_7g050720 29.221 308 161 9 14 275 19 315 4.34e-27 110
MS.gene040688.t1 MTR_3g061350 28.873 284 171 10 9 273 12 283 1.48e-26 107
MS.gene040688.t1 MTR_3g061320 27.500 280 175 10 9 273 12 278 5.03e-26 106
MS.gene040688.t1 MTR_3g061340 28.000 275 175 11 9 273 12 273 9.23e-26 105
MS.gene040688.t1 MTR_1g033740 38.255 149 73 5 14 155 31 167 1.18e-25 102
MS.gene040688.t1 MTR_1g035510 44.860 107 57 2 21 126 2 107 7.60e-25 101
MS.gene040688.t1 MTR_3g061370 27.076 277 185 10 9 273 9 280 2.75e-23 98.6
MS.gene040688.t1 MTR_1g035500 37.584 149 86 3 14 156 34 181 4.68e-23 95.5
MS.gene040688.t1 MTR_1g035520 26.667 300 168 6 21 273 88 382 1.27e-22 98.6
MS.gene040688.t1 MTR_1g035520 44.086 93 48 2 294 382 291 383 2.61e-15 77.0
MS.gene040688.t1 MTR_1g035460 25.000 308 182 7 21 288 2 300 3.36e-22 97.4
MS.gene040688.t1 MTR_4g119990 26.846 298 183 11 9 273 15 310 2.37e-21 94.7
MS.gene040688.t1 MTR_6g043890 27.037 270 175 7 13 261 23 291 3.50e-21 94.0
MS.gene040688.t1 MTR_1g035470 38.889 108 63 2 21 126 2 108 5.08e-21 88.6
MS.gene040688.t1 MTR_3g061290 30.952 168 110 3 9 172 12 177 2.51e-19 85.9
MS.gene040688.t1 MTR_3g061330 33.333 123 78 2 9 127 12 134 1.25e-18 85.1
MS.gene040688.t1 MTR_3g005480 25.279 269 156 8 14 275 30 260 3.48e-14 72.4
MS.gene040688.t1 MTR_7g050640 41.441 111 55 4 3 103 5 115 4.60e-14 68.6
MS.gene040688.t1 MTR_4g068320 37.624 101 57 2 7 101 4 104 2.11e-13 71.6
MS.gene040688.t1 MTR_1g034240 33.333 111 67 3 7 110 5 115 8.40e-12 66.6
MS.gene040688.t1 MTR_3g005460 25.182 274 162 10 14 273 271 515 1.45e-11 66.2
MS.gene040688.t1 MTR_3g061220 30.172 116 68 3 9 122 12 116 1.46e-11 61.6
MS.gene040688.t1 MTR_5g070440 22.761 268 174 7 14 276 30 269 1.92e-11 64.3
MS.gene040688.t1 MTR_3g005420 25.461 271 163 8 14 276 298 537 7.08e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040688.t1 AT3G18990 25.369 339 183 9 7 278 4 339 9.88e-21 93.2
MS.gene040688.t1 AT3G18990 25.893 336 179 10 7 275 4 336 1.35e-20 92.4
MS.gene040688.t1 AT4G01580 32.576 132 80 3 14 138 39 168 3.64e-11 62.4

Find 77 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACACCATTTGGAAATTTA+AGG 0.138162 1.2:+34123895 None:intergenic
GTGTTCAACAAGAAATATTT+TGG 0.149501 1.2:-34123878 MS.gene040688:CDS
CTTTGGGATTGCTTCGTTTC+CGG 0.165431 1.2:+34122749 None:intergenic
TTTGCAAAGTCTTTCAAATA+TGG 0.208675 1.2:-34123810 MS.gene040688:CDS
TTAAAACCTTGTAGTTTCTT+TGG 0.217113 1.2:+34122732 None:intergenic
TATTTCTCCACATATTTCTT+TGG 0.248757 1.2:+34123945 None:intergenic
ATTGTCCTTTGAGCTTTCTT+TGG 0.254871 1.2:+34123588 None:intergenic
TTTGGAAATTTAAGGAATAT+AGG 0.269064 1.2:+34123903 None:intergenic
TTAATGGAACTGTAACAATA+AGG 0.273629 1.2:-34122950 MS.gene040688:CDS
TTCATCAACTGATTTGATAT+TGG 0.273749 1.2:+34123704 None:intergenic
AGAAATATGTGGAGAAATAT+TGG 0.281812 1.2:-34123941 MS.gene040688:CDS
TTGGAAATTTAAGGAATATA+GGG 0.293892 1.2:+34123904 None:intergenic
GCATAACACATTCAAGGTTT+TGG 0.294441 1.2:-34122282 MS.gene040688:CDS
AAATATTGTGGAGTTGAAAA+TGG 0.298192 1.2:-34122110 MS.gene040688:CDS
AAAGCTCAAAGGACAATAAA+TGG 0.303877 1.2:-34123582 MS.gene040688:CDS
CTCTTAACTTTCAAATTCAT+TGG 0.314459 1.2:-34123783 MS.gene040688:CDS
TAAAACCTTGTAGTTTCTTT+GGG 0.320506 1.2:+34122733 None:intergenic
GTGGTGGTTGGAAAATATTC+AGG 0.328531 1.2:-34122860 MS.gene040688:CDS
ATTTCTTGTTGAACACCATT+TGG 0.331479 1.2:+34123885 None:intergenic
TTACAAAGAAAGATCTTGTT+TGG 0.332547 1.2:-34122883 MS.gene040688:CDS
CATTAACAGCTTCAGATGTT+TGG 0.351304 1.2:+34123143 None:intergenic
TAATGGAACTGTAACAATAA+GGG 0.353376 1.2:-34122949 MS.gene040688:CDS
GAGGTTAGTTTGAGGTATTA+TGG 0.363534 1.2:-34122906 MS.gene040688:CDS
AATATTATTCTATGAAAATC+TGG 0.366274 1.2:+34124092 None:intergenic
ATAGTGACAGTGAATGAAAA+AGG 0.401426 1.2:+34122780 None:intergenic
ATAGTTTATTTCTAAAGTAT+TGG 0.406626 1.2:+34123728 None:intergenic
AGTATTCGTGGCTGCAAGTT+CGG 0.421831 1.2:-34122049 MS.gene040688:CDS
TACAAAGAAAGATCTTGTTT+GGG 0.433738 1.2:-34122882 MS.gene040688:CDS
AATATTGTGGAGTTGAAAAT+GGG 0.451536 1.2:-34122109 MS.gene040688:CDS
AAGTGATGAAGAGAGTGATA+AGG 0.461668 1.2:-34123619 MS.gene040688:CDS
AAAGAATGCAATGTGGAGAT+TGG 0.464528 1.2:-34122004 MS.gene040688:CDS
CAAAGTGGCCATGGTGAAGA+AGG 0.465563 1.2:-34123176 MS.gene040688:CDS
CGTGGCTGCAAGTTCGGTAA+AGG 0.465915 1.2:-34122043 MS.gene040688:CDS
TGTCATTATAACTTCAAAAG+AGG 0.475259 1.2:+34123114 None:intergenic
TTAACTTTCAAATTCATTGG+TGG 0.475675 1.2:-34123780 MS.gene040688:CDS
TGGAGAGTAATGGTGACATT+TGG 0.482358 1.2:-34123854 MS.gene040688:CDS
GGTGCTGAAGCCACTGAAGA+AGG 0.489506 1.2:-34123681 MS.gene040688:CDS
GATGAAGCATAACACATTCA+AGG 0.490908 1.2:-34122288 MS.gene040688:CDS
CCAAAGGAATTTATGAAAAG+AGG 0.492978 1.2:-34122142 MS.gene040688:CDS
ATATTCCTTAAATTTCCAAA+TGG 0.494489 1.2:-34123900 MS.gene040688:CDS
TACTGTACAGAAGGTCATGA+TGG 0.501012 1.2:-34122311 MS.gene040688:intron
GATCTTGTTTGGGTGGTGGT+TGG 0.501988 1.2:-34122872 MS.gene040688:CDS
GTCATTATAACTTCAAAAGA+GGG 0.507540 1.2:+34123115 None:intergenic
AATTATTATGAGAGTATTCG+TGG 0.512630 1.2:-34122061 MS.gene040688:CDS
GGAGTGTGGAGGTTAGTTTG+AGG 0.513468 1.2:-34122914 MS.gene040688:CDS
ACTTTCTTTACCTTCTTCAG+TGG 0.514754 1.2:+34123671 None:intergenic
GATGAGGAAGCCACTGAAGA+AGG 0.517797 1.2:-34123648 MS.gene040688:CDS
ACTTTCTTCACCTTCTTCAG+TGG 0.520796 1.2:+34123638 None:intergenic
AGGATGTCATGGAAATATTG+TGG 0.534496 1.2:-34122122 MS.gene040688:CDS
TTTATGAAAAGAGGATGTCA+TGG 0.534842 1.2:-34122133 MS.gene040688:CDS
CAATAAGGGTTGGTAATGAA+AGG 0.535875 1.2:-34122935 MS.gene040688:CDS
AATGGCAAGAGAAAATTCTC+AGG 0.536390 1.2:-34123564 MS.gene040688:intron
AATATCAAATCAGTTGATGA+AGG 0.540855 1.2:-34123702 MS.gene040688:CDS
AAAGAAAGATCTTGTTTGGG+TGG 0.548816 1.2:-34122879 MS.gene040688:CDS
GCTGCAAGTTCGGTAAAGGT+TGG 0.563561 1.2:-34122039 MS.gene040688:CDS
GAAAGATCTTGTTTGGGTGG+TGG 0.568994 1.2:-34122876 MS.gene040688:CDS
TTTGGTGAAGAACACAGCCC+CGG 0.573521 1.2:-34122264 MS.gene040688:intron
TGAAAATGGGGAGGAAGCCA+TGG 0.575061 1.2:-34122096 MS.gene040688:CDS
GTATTTGCAGAGTGTACCAA+AGG 0.583029 1.2:-34122158 MS.gene040688:intron
ACTGTCACTATTACTCGTGC+CGG 0.586569 1.2:-34122768 MS.gene040688:CDS
ACTTACAAAGAAATAGCCAT+TGG 0.588354 1.2:+34123081 None:intergenic
AGGTTGTAACAAAGTGGCCA+TGG 0.594476 1.2:-34123185 MS.gene040688:CDS
GAGGGTTCCAAAGAAATATG+TGG 0.594786 1.2:-34123952 MS.gene040688:CDS
GCAATCCCAAAGAAACTACA+AGG 0.598347 1.2:-34122738 MS.gene040688:intron
CTTTACAGGTTGTAACAAAG+TGG 0.599398 1.2:-34123191 MS.gene040688:intron
AGAAGGTAAAGAAAGTGATG+AGG 0.601536 1.2:-34123664 MS.gene040688:CDS
TGGTGGTTGGAAAATATTCA+GGG 0.603185 1.2:-34122859 MS.gene040688:CDS
ATGACACAATCTTACACCAA+TGG 0.609025 1.2:-34123097 MS.gene040688:CDS
GGTTGGTAATGAAAGGAGTG+TGG 0.615653 1.2:-34122928 MS.gene040688:CDS
TATGTGGAGAAATATTGGAA+AGG 0.617787 1.2:-34123936 MS.gene040688:CDS
GGAACTGTAACAATAAGGGT+TGG 0.627229 1.2:-34122945 MS.gene040688:CDS
TTGTGGAGTTGAAAATGGGG+AGG 0.632079 1.2:-34122105 MS.gene040688:CDS
TGGTAATGAAAGGAGTGTGG+AGG 0.642373 1.2:-34122925 MS.gene040688:CDS
AAATGCCAAAGAAAGCTCAA+AGG 0.663329 1.2:-34123593 MS.gene040688:CDS
ACTGTACAGAAGGTCATGAT+GGG 0.685690 1.2:-34122310 MS.gene040688:intron
ATATTGTGGAGTTGAAAATG+GGG 0.692849 1.2:-34122108 MS.gene040688:CDS
ATTCATGAAAGAATGCAATG+TGG 0.698838 1.2:-34122011 MS.gene040688:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATATAATATATAGTTAATT+AGG + chr1.2:34123602-34123621 None:intergenic 10.0%
!! CATTTATGATAAAAAAAATT+TGG - chr1.2:34122738-34122757 MS.gene040688:intron 10.0%
!!! ATGAATAATTTATAAGTTTT+TGG - chr1.2:34123507-34123526 MS.gene040688:intron 10.0%
!! AATATTATTCTATGAAAATC+TGG + chr1.2:34121949-34121968 None:intergenic 15.0%
!! ATTATATCTTTAAACTTTAC+AGG - chr1.2:34122833-34122852 MS.gene040688:CDS 15.0%
!!! AAATATGTTATTTTTTTGGA+AGG - chr1.2:34122696-34122715 MS.gene040688:intron 15.0%
!!! AGTTTTTAATAGTTAGTAAT+TGG - chr1.2:34123534-34123553 MS.gene040688:intron 15.0%
!!! ATAGTTTATTTCTAAAGTAT+TGG + chr1.2:34122313-34122332 None:intergenic 15.0%
!!! CAAATATCTCTAAATTTTTT+GGG - chr1.2:34123663-34123682 MS.gene040688:CDS 15.0%
!!! TATTTTAAGGTTAAGATATT+TGG - chr1.2:34122285-34122304 MS.gene040688:CDS 15.0%
!!! TCAAATATCTCTAAATTTTT+TGG - chr1.2:34123662-34123681 MS.gene040688:CDS 15.0%
!!! TTTTATTTAATTAATCCTAC+CGG + chr1.2:34123796-34123815 None:intergenic 15.0%
!! ATATTCCTTAAATTTCCAAA+TGG - chr1.2:34122138-34122157 MS.gene040688:CDS 20.0%
!! GAAATCATACATTAACAATA+TGG + chr1.2:34122049-34122068 None:intergenic 20.0%
!! TTGGAAATTTAAGGAATATA+GGG + chr1.2:34122137-34122156 None:intergenic 20.0%
!! TTTATTTAATTAATCCTACC+GGG + chr1.2:34123795-34123814 None:intergenic 20.0%
!! TTTGGAAATTTAAGGAATAT+AGG + chr1.2:34122138-34122157 None:intergenic 20.0%
!!! ACATTTGGTTTCAAAAAAAT+TGG - chr1.2:34122199-34122218 MS.gene040688:intron 20.0%
!!! CATTTGGTTTCAAAAAAATT+GGG - chr1.2:34122200-34122219 MS.gene040688:intron 20.0%
!!! GAAAACTTGAAAGATTTTAA+TGG - chr1.2:34123072-34123091 MS.gene040688:intron 20.0%
!!! TGTTCAACAAGAAATATTTT+GGG - chr1.2:34122161-34122180 MS.gene040688:intron 20.0%
! AAATATTGTGGAGTTGAAAA+TGG - chr1.2:34123928-34123947 MS.gene040688:CDS 25.0%
! AACTTAATCCTACATAAGTT+AGG + chr1.2:34123560-34123579 None:intergenic 25.0%
! AATATTGTGGAGTTGAAAAT+GGG - chr1.2:34123929-34123948 MS.gene040688:CDS 25.0%
! AGAAATATGTGGAGAAATAT+TGG - chr1.2:34122097-34122116 MS.gene040688:CDS 25.0%
! CTCTTAACTTTCAAATTCAT+TGG - chr1.2:34122255-34122274 MS.gene040688:intron 25.0%
! GTCATTATAACTTCAAAAGA+GGG + chr1.2:34122926-34122945 None:intergenic 25.0%
! TAAAACCTTGTAGTTTCTTT+GGG + chr1.2:34123308-34123327 None:intergenic 25.0%
! TAATGGAACTGTAACAATAA+GGG - chr1.2:34123089-34123108 MS.gene040688:CDS 25.0%
! TATTTCTCCACATATTTCTT+TGG + chr1.2:34122096-34122115 None:intergenic 25.0%
! TGTCATTATAACTTCAAAAG+AGG + chr1.2:34122927-34122946 None:intergenic 25.0%
! TTAAAACCTTGTAGTTTCTT+TGG + chr1.2:34123309-34123328 None:intergenic 25.0%
! TTAACTTTCAAATTCATTGG+TGG - chr1.2:34122258-34122277 MS.gene040688:intron 25.0%
! TTAATGGAACTGTAACAATA+AGG - chr1.2:34123088-34123107 MS.gene040688:CDS 25.0%
! TTACAAAGAAAGATCTTGTT+TGG - chr1.2:34123155-34123174 MS.gene040688:CDS 25.0%
! TTATTTAATTAATCCTACCG+GGG + chr1.2:34123794-34123813 None:intergenic 25.0%
! TTTGCAAAGTCTTTCAAATA+TGG - chr1.2:34122228-34122247 MS.gene040688:intron 25.0%
!! GTGTTCAACAAGAAATATTT+TGG - chr1.2:34122160-34122179 MS.gene040688:intron 25.0%
!! TACAAAGAAAGATCTTGTTT+GGG - chr1.2:34123156-34123175 MS.gene040688:CDS 25.0%
!!! AACTTTTAAGAGTTATTCCA+TGG - chr1.2:34122573-34122592 MS.gene040688:intron 25.0%
!!! AATATCAAATCAGTTGATGA+AGG - chr1.2:34122336-34122355 MS.gene040688:intron 25.0%
!!! AATTATTATGAGAGTATTCG+TGG - chr1.2:34123977-34123996 MS.gene040688:intron 25.0%
!!! TTCATCAACTGATTTGATAT+TGG + chr1.2:34122337-34122356 None:intergenic 25.0%
AAAGCTCAAAGGACAATAAA+TGG - chr1.2:34122456-34122475 MS.gene040688:intron 30.0%
ACTTACAAAGAAATAGCCAT+TGG + chr1.2:34122960-34122979 None:intergenic 30.0%
ATAGTGACAGTGAATGAAAA+AGG + chr1.2:34123261-34123280 None:intergenic 30.0%
ATATTGTGGAGTTGAAAATG+GGG - chr1.2:34123930-34123949 MS.gene040688:CDS 30.0%
ATTCATGAAAGAATGCAATG+TGG - chr1.2:34124027-34124046 MS.gene040688:intron 30.0%
ATTTCTTGTTGAACACCATT+TGG + chr1.2:34122156-34122175 None:intergenic 30.0%
CCAAAGGAATTTATGAAAAG+AGG - chr1.2:34123896-34123915 MS.gene040688:CDS 30.0%
GAAAAAATCACAACAAACCA+TGG + chr1.2:34122593-34122612 None:intergenic 30.0%
GAAAATTCTCAGGTAAGTTT+AGG - chr1.2:34122484-34122503 MS.gene040688:intron 30.0%
GAACACCATTTGGAAATTTA+AGG + chr1.2:34122146-34122165 None:intergenic 30.0%
TATGTGGAGAAATATTGGAA+AGG - chr1.2:34122102-34122121 MS.gene040688:CDS 30.0%
TCTGAAAGCTTGTAAATCTA+AGG - chr1.2:34122613-34122632 MS.gene040688:intron 30.0%
TTTATGAAAAGAGGATGTCA+TGG - chr1.2:34123905-34123924 MS.gene040688:CDS 30.0%
! AGTGTCTTGAAAATCGTTTT+TGG - chr1.2:34122646-34122665 MS.gene040688:intron 30.0%
! CCTCTTTTCATAAATTCCTT+TGG + chr1.2:34123899-34123918 None:intergenic 30.0%
! TAAACCATGATTTGAAACAG+TGG - chr1.2:34123028-34123047 MS.gene040688:intron 30.0%
! TTTTCTCTTGAAAACTCACT+TGG + chr1.2:34123057-34123076 None:intergenic 30.0%
!! CATTGGTGGATCATATTTTA+AGG - chr1.2:34122272-34122291 MS.gene040688:CDS 30.0%
!! TAATTCACTTTTACGAACCA+TGG + chr1.2:34123962-34123981 None:intergenic 30.0%
!! TCAACAAGAAATATTTTGGG+TGG - chr1.2:34122164-34122183 MS.gene040688:intron 30.0%
AAAGAATGCAATGTGGAGAT+TGG - chr1.2:34124034-34124053 MS.gene040688:intron 35.0%
AAATGCCAAAGAAAGCTCAA+AGG - chr1.2:34122445-34122464 MS.gene040688:intron 35.0%
AAGTGATGAAGAGAGTGATA+AGG - chr1.2:34122419-34122438 MS.gene040688:intron 35.0%
AATGGCAAGAGAAAATTCTC+AGG - chr1.2:34122474-34122493 MS.gene040688:intron 35.0%
ACTTTCTTTACCTTCTTCAG+TGG + chr1.2:34122370-34122389 None:intergenic 35.0%
AGAAGGTAAAGAAAGTGATG+AGG - chr1.2:34122374-34122393 MS.gene040688:intron 35.0%
AGGATGTCATGGAAATATTG+TGG - chr1.2:34123916-34123935 MS.gene040688:CDS 35.0%
ATGACACAATCTTACACCAA+TGG - chr1.2:34122941-34122960 MS.gene040688:CDS 35.0%
ATTGTCCTTTGAGCTTTCTT+TGG + chr1.2:34122453-34122472 None:intergenic 35.0%
CATTAACAGCTTCAGATGTT+TGG + chr1.2:34122898-34122917 None:intergenic 35.0%
CTGAATTTCTTTGTTGCAGA+GGG - chr1.2:34122068-34122087 MS.gene040688:CDS 35.0%
CTTTACAGGTTGTAACAAAG+TGG - chr1.2:34122847-34122866 MS.gene040688:CDS 35.0%
GATGAAGCATAACACATTCA+AGG - chr1.2:34123750-34123769 MS.gene040688:CDS 35.0%
GTAACCACTGTTTCAAATCA+TGG + chr1.2:34123035-34123054 None:intergenic 35.0%
TCTGAATTTCTTTGTTGCAG+AGG - chr1.2:34122067-34122086 MS.gene040688:CDS 35.0%
TGGTGGTTGGAAAATATTCA+GGG - chr1.2:34123179-34123198 MS.gene040688:CDS 35.0%
TTATGCTTGTACTGTACAGA+AGG - chr1.2:34123718-34123737 MS.gene040688:CDS 35.0%
! AAAGAAAGATCTTGTTTGGG+TGG - chr1.2:34123159-34123178 MS.gene040688:CDS 35.0%
! GCATAACACATTCAAGGTTT+TGG - chr1.2:34123756-34123775 MS.gene040688:CDS 35.0%
! GTAATTGGCCTAACTTATGT+AGG - chr1.2:34123549-34123568 MS.gene040688:intron 35.0%
!! ATATTTTGGGTGGAGAGTAA+TGG - chr1.2:34122174-34122193 MS.gene040688:intron 35.0%
!! CAATAAGGGTTGGTAATGAA+AGG - chr1.2:34123103-34123122 MS.gene040688:CDS 35.0%
!! GAGGTTAGTTTGAGGTATTA+TGG - chr1.2:34123132-34123151 MS.gene040688:CDS 35.0%
ACTGTACAGAAGGTCATGAT+GGG - chr1.2:34123728-34123747 MS.gene040688:CDS 40.0%
ACTTTCTTCACCTTCTTCAG+TGG + chr1.2:34122403-34122422 None:intergenic 40.0%
GAGGGTTCCAAAGAAATATG+TGG - chr1.2:34122086-34122105 MS.gene040688:CDS 40.0%
GCAATCCCAAAGAAACTACA+AGG - chr1.2:34123300-34123319 MS.gene040688:intron 40.0%
GGAACTGTAACAATAAGGGT+TGG - chr1.2:34123093-34123112 MS.gene040688:CDS 40.0%
GTATTTGCAGAGTGTACCAA+AGG - chr1.2:34123880-34123899 MS.gene040688:CDS 40.0%
GTGGTGGTTGGAAAATATTC+AGG - chr1.2:34123178-34123197 MS.gene040688:CDS 40.0%
TACTGTACAGAAGGTCATGA+TGG - chr1.2:34123727-34123746 MS.gene040688:CDS 40.0%
TGGAGAGTAATGGTGACATT+TGG - chr1.2:34122184-34122203 MS.gene040688:intron 40.0%
!! TTTTCTAGCCTTCTTCACCA+TGG + chr1.2:34122873-34122892 None:intergenic 40.0%
ACTGTCACTATTACTCGTGC+CGG - chr1.2:34123270-34123289 MS.gene040688:intron 45.0%
AGGTTGTAACAAAGTGGCCA+TGG - chr1.2:34122853-34122872 MS.gene040688:CDS 45.0%
AGTATTCGTGGCTGCAAGTT+CGG - chr1.2:34123989-34124008 MS.gene040688:intron 45.0%
TTGTGGAGTTGAAAATGGGG+AGG - chr1.2:34123933-34123952 MS.gene040688:CDS 45.0%
! GAAAGATCTTGTTTGGGTGG+TGG - chr1.2:34123162-34123181 MS.gene040688:CDS 45.0%
! TGGTAATGAAAGGAGTGTGG+AGG - chr1.2:34123113-34123132 MS.gene040688:CDS 45.0%
!! CTTTGGGATTGCTTCGTTTC+CGG + chr1.2:34123292-34123311 None:intergenic 45.0%
!! GGTTGGTAATGAAAGGAGTG+TGG - chr1.2:34123110-34123129 MS.gene040688:CDS 45.0%
!!! AATTAAAAAAGTTTTTAATT+TGG - chr1.2:34123473-34123492 MS.gene040688:intron 5.0%
!!! ATAAAAATATGTTATTTTTT+TGG - chr1.2:34122692-34122711 MS.gene040688:intron 5.0%
CAAAGTGGCCATGGTGAAGA+AGG - chr1.2:34122862-34122881 MS.gene040688:CDS 50.0%
GATGAGGAAGCCACTGAAGA+AGG - chr1.2:34122390-34122409 MS.gene040688:intron 50.0%
GCTGCAAGTTCGGTAAAGGT+TGG - chr1.2:34123999-34124018 MS.gene040688:intron 50.0%
TGAAAATGGGGAGGAAGCCA+TGG - chr1.2:34123942-34123961 MS.gene040688:CDS 50.0%
TTTGGTGAAGAACACAGCCC+CGG - chr1.2:34123774-34123793 MS.gene040688:CDS 50.0%
! GATCTTGTTTGGGTGGTGGT+TGG - chr1.2:34123166-34123185 MS.gene040688:CDS 50.0%
!! GGAGTGTGGAGGTTAGTTTG+AGG - chr1.2:34123124-34123143 MS.gene040688:CDS 50.0%
CGTGGCTGCAAGTTCGGTAA+AGG - chr1.2:34123995-34124014 MS.gene040688:intron 55.0%
! GGTGCTGAAGCCACTGAAGA+AGG - chr1.2:34122357-34122376 MS.gene040688:intron 55.0%
GTGAAGAACACAGCCCCGGT+AGG - chr1.2:34123778-34123797 MS.gene040688:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 34121928 34124132 34121928 ID=MS.gene040688
chr1.2 mRNA 34121928 34124132 34121928 ID=MS.gene040688.t1;Parent=MS.gene040688
chr1.2 exon 34124076 34124132 34124076 ID=MS.gene040688.t1.exon1;Parent=MS.gene040688.t1
chr1.2 CDS 34124076 34124132 34124076 ID=cds.MS.gene040688.t1;Parent=MS.gene040688.t1
chr1.2 exon 34123565 34123973 34123565 ID=MS.gene040688.t1.exon2;Parent=MS.gene040688.t1
chr1.2 CDS 34123565 34123973 34123565 ID=cds.MS.gene040688.t1;Parent=MS.gene040688.t1
chr1.2 exon 34123087 34123205 34123087 ID=MS.gene040688.t1.exon3;Parent=MS.gene040688.t1
chr1.2 CDS 34123087 34123205 34123087 ID=cds.MS.gene040688.t1;Parent=MS.gene040688.t1
chr1.2 exon 34122739 34123012 34122739 ID=MS.gene040688.t1.exon4;Parent=MS.gene040688.t1
chr1.2 CDS 34122739 34123012 34122739 ID=cds.MS.gene040688.t1;Parent=MS.gene040688.t1
chr1.2 exon 34122265 34122323 34122265 ID=MS.gene040688.t1.exon5;Parent=MS.gene040688.t1
chr1.2 CDS 34122265 34122323 34122265 ID=cds.MS.gene040688.t1;Parent=MS.gene040688.t1
chr1.2 exon 34121928 34122170 34121928 ID=MS.gene040688.t1.exon6;Parent=MS.gene040688.t1
chr1.2 CDS 34121928 34122170 34121928 ID=cds.MS.gene040688.t1;Parent=MS.gene040688.t1
Gene Sequence

>MS.gene040688

ATGTCATTTCAACATGTTCCAGATTTTCATAGAATAATATTGCAAGATAAGAAACTTGTAAGTCTATTACAAATAATTATATTGCATATTTTATATTATGTTTCATTTATGCTGTAAACCATATTGTTAATGTATGATTTCTGAATTTCTTTGTTGCAGAGGGTTCCAAAGAAATATGTGGAGAAATATTGGAAAGGAATATCAAACCCTATATTCCTTAAATTTCCAAATGGTGTTCAACAAGAAATATTTTGGGTGGAGAGTAATGGTGACATTTGGTTTCAAAAAAATTGGGAAAGTTTTGCAAAGTCTTTCAAATATGGATATCTCTTAACTTTCAAATTCATTGGTGGATCATATTTTAAGGTTAAGATATTTGGTGCCAATACTTTAGAAATAAACTATGCCAATATCAAATCAGTTGATGAAGGTGCTGAAGCCACTGAAGAAGGTAAAGAAAGTGATGAGGAAGCCACTGAAGAAGGTGAAGAAAGTGATGAAGAGAGTGATAAGGTTGAAATGCCAAAGAAAGCTCAAAGGACAATAAATGGCAAGAGAAAATTCTCAGGTAAGTTTAGGCTTGTCTGTTACTCTATTTATTTTTTTAAACAAAAATCATTAGTTTTTTTAGAAATAATTGCTTTTAACTTTTAAGAGTTATTCCATGGTTTGTTGTGATTTTTTCTCTGAAAGCTTGTAAATCTAAGGAAGAAAAAAAAGTGTCTTGAAAATCGTTTTTGGAAGCATTGTTAGATACTTTTTCTATAAAAATATGTTATTTTTTTGGAAGGAAAAATATGTGATTTTTATCATTTATGATAAAAAAAATTTGGTTTTTTAAAATCGTTTGAAAATAATCTCTAAATCAAATGTATGATAAATAGTTAATGTAAACAAAATAGATCATTATATCTTTAAACTTTACAGGTTGTAACAAAGTGGCCATGGTGAAGAAGGCTAGAAAATACCAAACATCTGAAGCTGTTAATGAGAATCCCTCTTTTGAAGTTATAATGACACAATCTTACACCAATGGCTATTTCTTTGTAAGTTTTCTATACAAAGTATCTAATAAGTTTAGCTTTAATTAATATCTCTAATAAACCATGATTTGAAACAGTGGTTACCAAGTGAGTTTTCAAGAGAAAACTTGAAAGATTTTAATGGAACTGTAACAATAAGGGTTGGTAATGAAAGGAGTGTGGAGGTTAGTTTGAGGTATTATGGTTACAAAGAAAGATCTTGTTTGGGTGGTGGTTGGAAAATATTCAGGGAAAAATATAATTTGCAAGTTGACGATGTTTGTAAATTTGAGATGATTCGACAGAGACCTTTTTCATTCACTGTCACTATTACTCGTGCCGGAAACGAAGCAATCCCAAAGAAACTACAAGGTTTTAATTCTTTCTTTTTCTTTTATTTGCTTTTTTGTATGTTATCATGTTTTTATTTGATAAATTATATTATTCTAACTTTTTTAAAGTTTATAGATTTTATTATTGTAAATGACTCTTATATATATGTAATTTTTAAAATTGTTCTGAGAATTAAAAAAGTTTTTAATTTGGTCTGCAAACATATGAATAATTTATAAGTTTTTGGACTAAGTTTTTAATAGTTAGTAATTGGCCTAACTTATGTAGGATTAAGTTTATTTTTTTTAGTTTAAAACCTAATTAACTATATATTATATGTTTAAGTTCATACTTGAAATTTTTTAGCTCAAAAGTATATTCAAATATCTCTAAATTTTTTGGGTGTTATAAAATTTAGACGATATCATTTTGTATTTATGCTTGTACTGTACAGAAGGTCATGATGGGATGAAGCATAACACATTCAAGGTTTTGGTGAAGAACACAGCCCCGGTAGGATTAATTAAATAAAATATAGTTACATATATAGATAGAAATGTTAGAACTACAAAAAATAAATAAATGATATTTTTGTTTGTATTTGCAGAGTGTACCAAAGGAATTTATGAAAAGAGGATGTCATGGAAATATTGTGGAGTTGAAAATGGGGAGGAAGCCATGGTTCGTAAAAGTGAATTATTATGAGAGTATTCGTGGCTGCAAGTTCGGTAAAGGTTGGACAAAATTCATGAAAGAATGCAATGTGGAGATTGGAGATACTTGTCTCTTTAAGTTGATTGATGAGAGAAAATTTGTGTTTGATGTTTCAATTGTTGCAAGAAACCATTAG
Protein sequence

>MS.gene040688.t1

MSFQHVPDFHRIILQDKKLRVPKKYVEKYWKGISNPIFLKFPNGVQQEIFWVESNGDIWFQKNWESFAKSFKYGYLLTFKFIGGSYFKVKIFGANTLEINYANIKSVDEGAEATEEGKESDEEATEEGEESDEESDKVEMPKKAQRTINGKRKFSGCNKVAMVKKARKYQTSEAVNENPSFEVIMTQSYTNGYFFWLPSEFSRENLKDFNGTVTIRVGNERSVEVSLRYYGYKERSCLGGGWKIFREKYNLQVDDVCKFEMIRQRPFSFTVTITRAGNEAIPKKLQEGHDGMKHNTFKVLVKNTAPSVPKEFMKRGCHGNIVELKMGRKPWFVKVNYYESIRGCKFGKGWTKFMKECNVEIGDTCLFKLIDERKFVFDVSIVARNH