Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052850.t1 | KEH40807.1 | 88.6 | 414 | 45 | 2 | 1 | 413 | 1 | 413 | 2.20E-215 | 758.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052850.t1 | Q8L3W1 | 23.1 | 342 | 190 | 11 | 9 | 284 | 6 | 340 | 1.6e-09 | 65.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052850.t1 | A0A072VG97 | 88.6 | 414 | 45 | 2 | 1 | 413 | 1 | 413 | 1.6e-215 | 758.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene052850.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052850.t1 | MTR_1g035620 | 88.434 | 415 | 46 | 2 | 1 | 414 | 1 | 414 | 0.0 | 754 |
| MS.gene052850.t1 | MTR_1g050845 | 82.804 | 378 | 49 | 3 | 1 | 376 | 1 | 364 | 0.0 | 621 |
| MS.gene052850.t1 | MTR_1g035570 | 44.470 | 434 | 182 | 12 | 1 | 412 | 1 | 397 | 5.87e-109 | 327 |
| MS.gene052850.t1 | MTR_1g035640 | 39.540 | 478 | 204 | 15 | 1 | 408 | 1 | 463 | 1.47e-93 | 289 |
| MS.gene052850.t1 | MTR_1g035650 | 55.024 | 209 | 75 | 4 | 1 | 196 | 1 | 203 | 1.08e-67 | 214 |
| MS.gene052850.t1 | MTR_6g061070 | 35.011 | 457 | 235 | 12 | 9 | 408 | 18 | 469 | 1.11e-67 | 222 |
| MS.gene052850.t1 | MTR_1g035490 | 41.958 | 286 | 144 | 10 | 139 | 413 | 58 | 332 | 3.40e-59 | 196 |
| MS.gene052850.t1 | MTR_7g050710 | 31.353 | 303 | 171 | 9 | 6 | 278 | 10 | 305 | 6.71e-35 | 132 |
| MS.gene052850.t1 | MTR_5g044670 | 30.897 | 301 | 180 | 8 | 3 | 281 | 10 | 304 | 3.57e-34 | 130 |
| MS.gene052850.t1 | MTR_3g098790 | 30.928 | 291 | 180 | 8 | 6 | 278 | 10 | 297 | 6.79e-34 | 129 |
| MS.gene052850.t1 | MTR_1g033740 | 41.104 | 163 | 75 | 4 | 9 | 156 | 22 | 178 | 8.14e-32 | 120 |
| MS.gene052850.t1 | MTR_7g050580 | 30.952 | 294 | 167 | 9 | 6 | 278 | 10 | 288 | 8.43e-32 | 123 |
| MS.gene052850.t1 | MTR_8g103940 | 24.174 | 484 | 272 | 18 | 2 | 410 | 32 | 495 | 7.44e-31 | 124 |
| MS.gene052850.t1 | MTR_7g050560 | 30.068 | 296 | 167 | 11 | 6 | 278 | 10 | 288 | 1.60e-29 | 117 |
| MS.gene052850.t1 | MTR_7g050720 | 29.260 | 311 | 174 | 9 | 6 | 278 | 7 | 309 | 1.58e-27 | 111 |
| MS.gene052850.t1 | MTR_1g108780 | 24.569 | 464 | 256 | 15 | 24 | 410 | 12 | 458 | 6.95e-27 | 112 |
| MS.gene052850.t1 | MTR_1g035500 | 36.810 | 163 | 91 | 4 | 5 | 156 | 21 | 182 | 1.11e-26 | 105 |
| MS.gene052850.t1 | MTR_6g043890 | 28.070 | 285 | 170 | 8 | 9 | 266 | 15 | 291 | 1.34e-26 | 109 |
| MS.gene052850.t1 | MTR_1g035480 | 38.994 | 159 | 82 | 5 | 9 | 156 | 17 | 171 | 1.78e-26 | 105 |
| MS.gene052850.t1 | MTR_7g050590 | 27.046 | 281 | 174 | 5 | 25 | 278 | 2 | 278 | 9.19e-24 | 100 |
| MS.gene052850.t1 | MTR_1g035510 | 38.571 | 140 | 76 | 4 | 25 | 155 | 2 | 140 | 1.11e-23 | 98.6 |
| MS.gene052850.t1 | MTR_1g035510 | 41.584 | 101 | 56 | 2 | 267 | 364 | 122 | 222 | 2.51e-16 | 78.2 |
| MS.gene052850.t1 | MTR_1g035520 | 27.508 | 309 | 155 | 10 | 25 | 278 | 88 | 382 | 3.48e-23 | 100 |
| MS.gene052850.t1 | MTR_4g119990 | 26.623 | 308 | 176 | 12 | 9 | 278 | 15 | 310 | 4.71e-22 | 97.4 |
| MS.gene052850.t1 | MTR_1g035470 | 45.455 | 99 | 53 | 1 | 25 | 123 | 2 | 99 | 1.79e-21 | 90.1 |
| MS.gene052850.t1 | MTR_3g061310 | 25.784 | 287 | 188 | 9 | 6 | 278 | 9 | 284 | 3.11e-21 | 93.2 |
| MS.gene052850.t1 | MTR_3g061320 | 24.739 | 287 | 185 | 9 | 6 | 278 | 9 | 278 | 2.46e-20 | 90.9 |
| MS.gene052850.t1 | MTR_3g061290 | 33.526 | 173 | 103 | 5 | 6 | 174 | 9 | 173 | 1.62e-19 | 86.7 |
| MS.gene052850.t1 | MTR_3g061370 | 25.175 | 286 | 184 | 8 | 9 | 278 | 9 | 280 | 2.19e-19 | 88.2 |
| MS.gene052850.t1 | MTR_3g061350 | 23.675 | 283 | 198 | 7 | 6 | 278 | 9 | 283 | 1.70e-18 | 85.5 |
| MS.gene052850.t1 | MTR_3g061330 | 27.184 | 206 | 139 | 4 | 6 | 202 | 9 | 212 | 1.84e-18 | 84.7 |
| MS.gene052850.t1 | MTR_3g061340 | 25.704 | 284 | 181 | 9 | 6 | 278 | 9 | 273 | 3.10e-18 | 84.7 |
| MS.gene052850.t1 | MTR_1g035460 | 24.161 | 298 | 168 | 8 | 25 | 278 | 2 | 285 | 1.20e-17 | 84.7 |
| MS.gene052850.t1 | MTR_7g050640 | 41.758 | 91 | 51 | 1 | 8 | 96 | 12 | 102 | 1.59e-15 | 72.8 |
| MS.gene052850.t1 | MTR_1g035440 | 37.000 | 100 | 60 | 2 | 9 | 105 | 15 | 114 | 6.65e-14 | 71.6 |
| MS.gene052850.t1 | MTR_3g005490 | 23.381 | 278 | 176 | 7 | 9 | 284 | 21 | 263 | 7.85e-13 | 68.6 |
| MS.gene052850.t1 | MTR_3g005480 | 22.028 | 286 | 171 | 8 | 9 | 284 | 21 | 264 | 2.86e-12 | 67.0 |
| MS.gene052850.t1 | MTR_5g070440 | 22.300 | 287 | 186 | 9 | 9 | 291 | 21 | 274 | 2.04e-11 | 64.7 |
| MS.gene052850.t1 | MTR_1g021360 | 27.536 | 276 | 155 | 11 | 22 | 266 | 195 | 456 | 5.35e-11 | 64.7 |
| MS.gene052850.t1 | MTR_4g068320 | 36.364 | 99 | 61 | 1 | 9 | 105 | 6 | 104 | 5.87e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052850.t1 | AT1G49475 | 33.051 | 118 | 70 | 5 | 9 | 123 | 34 | 145 | 9.40e-11 | 61.2 |
Find 71 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTGCAGATGACCCTTTA+AGG | 0.106528 | 1.4:-20338422 | None:intergenic |
| GTGCTCAACAGGAAATATTT+TGG | 0.162791 | 1.4:+20337491 | MS.gene052850:CDS |
| AATATCTTAACCTTAAAATA+TGG | 0.178478 | 1.4:-20337613 | None:intergenic |
| TCTATTGTGATGATAATATT+TGG | 0.191054 | 1.4:+20338764 | MS.gene052850:CDS |
| TGCAGGTTGGCATAAATTTA+AGG | 0.202920 | 1.4:+20339505 | MS.gene052850:CDS |
| TTACGCTCATGGCTATATTT+TGG | 0.211055 | 1.4:+20338037 | MS.gene052850:CDS |
| ATATTTGGTTTAAGAGAAAT+TGG | 0.232188 | 1.4:+20337530 | MS.gene052850:CDS |
| AGAAATTTGTGGAGAAATAT+TGG | 0.241294 | 1.4:+20337428 | MS.gene052850:CDS |
| TTTGGGAGTCTAAGAATTAC+TGG | 0.267570 | 1.4:-20337466 | None:intergenic |
| TATTTGAATGACAACCTTAA+AGG | 0.276541 | 1.4:+20338408 | MS.gene052850:CDS |
| AGTCTAAGAATTACTGGATT+TGG | 0.299817 | 1.4:-20337460 | None:intergenic |
| ATATTTCTCCACAAATTTCT+TGG | 0.318034 | 1.4:-20337425 | None:intergenic |
| ACTATCTTCAAGAACTCTTC+TGG | 0.329140 | 1.4:-20337173 | None:intergenic |
| TGGAGCGTGACGGTGATATT+TGG | 0.333381 | 1.4:+20337515 | MS.gene052850:CDS |
| AACTTCACCTCCACTTTCAT+AGG | 0.353581 | 1.4:-20338465 | None:intergenic |
| ACAAAGGAGGCATAATTAAG+AGG | 0.367124 | 1.4:+20337940 | MS.gene052850:CDS |
| ATTTCCTGTTGAGCACCATT+TGG | 0.373513 | 1.4:-20337484 | None:intergenic |
| ATTTGAATGACAACCTTAAA+GGG | 0.391511 | 1.4:+20338409 | MS.gene052850:CDS |
| TCGAAATCATGAACTACATA+AGG | 0.397577 | 1.4:+20337196 | MS.gene052850:CDS |
| ACTCCCAAATGGTGCTCAAC+AGG | 0.399322 | 1.4:+20337480 | MS.gene052850:CDS |
| TGGAAGAAAAGAGGCATTGA+AGG | 0.400150 | 1.4:+20338784 | MS.gene052850:CDS |
| TATTTCTCCACAAATTTCTT+GGG | 0.405795 | 1.4:-20337424 | None:intergenic |
| TTTCCTGTTGAGCACCATTT+GGG | 0.415520 | 1.4:-20337483 | None:intergenic |
| TCATCTGCAAGCATTAGATT+TGG | 0.416468 | 1.4:+20338432 | MS.gene052850:CDS |
| AAATTCGTGCAGTTCACAAA+TGG | 0.417597 | 1.4:+20339428 | MS.gene052850:CDS |
| GAAGATTGCGGATTGAAGAT+TGG | 0.417689 | 1.4:+20339527 | MS.gene052850:CDS |
| GACAATTCAAGTTCAAAACT+TGG | 0.430631 | 1.4:-20338008 | None:intergenic |
| AATTCGTGCAGTTCACAAAT+GGG | 0.433283 | 1.4:+20339429 | MS.gene052850:CDS |
| ATTAATCAGCAAAGAATCTC+TGG | 0.443135 | 1.4:+20337790 | MS.gene052850:CDS |
| ATATCTTAACCTTAAAATAT+GGG | 0.446492 | 1.4:-20337612 | None:intergenic |
| GAACAATGACAAGGTTATGA+AGG | 0.451012 | 1.4:+20338736 | MS.gene052850:intron |
| CATATATACTCGAGAGATCA+TGG | 0.457380 | 1.4:-20338822 | None:intergenic |
| ACACGAATCTCGATTGTGTT+CGG | 0.462954 | 1.4:-20339260 | None:intergenic |
| AATATTATGAGAGAACTTGT+AGG | 0.465524 | 1.4:+20339477 | MS.gene052850:CDS |
| GAGAGTTCCCAAGAAATTTG+TGG | 0.469633 | 1.4:+20337417 | MS.gene052850:intron |
| TTTGCAAAGTCTCTAAAAGA+TGG | 0.473533 | 1.4:+20337559 | MS.gene052850:CDS |
| TTTGGCTTGGGTGATAGTTA+TGG | 0.473644 | 1.4:-20338616 | None:intergenic |
| TGTGTTTCAGCAGACTTAGA+AGG | 0.481816 | 1.4:+20339221 | MS.gene052850:intron |
| TATTTGGTTTAAGAGAAATT+GGG | 0.491470 | 1.4:+20337531 | MS.gene052850:CDS |
| GATATTTGGTCACAATACAT+TGG | 0.502848 | 1.4:+20337630 | MS.gene052850:CDS |
| GATAATATTTGGAAGAAAAG+AGG | 0.503729 | 1.4:+20338775 | MS.gene052850:CDS |
| CGAAATCATGAACTACATAA+GGG | 0.505471 | 1.4:+20337197 | MS.gene052850:CDS |
| AGAACTTGTAGGTTCTATGC+AGG | 0.508431 | 1.4:+20339488 | MS.gene052850:CDS |
| AGAACATGCATTGTCACCTC+TGG | 0.519227 | 1.4:+20338507 | MS.gene052850:CDS |
| CATAAATTTAAGGAAGATTG+CGG | 0.529511 | 1.4:+20339515 | MS.gene052850:CDS |
| GAGGCATTGAAGGAAGTTCA+AGG | 0.529967 | 1.4:+20338794 | MS.gene052850:CDS |
| CTTGTAGGTTCTATGCAGGT+TGG | 0.536785 | 1.4:+20339492 | MS.gene052850:CDS |
| TTCATAGATGAAAGTTGTGA+AGG | 0.538273 | 1.4:+20337676 | MS.gene052850:CDS |
| CAAAGGAGGCATAATTAAGA+GGG | 0.540734 | 1.4:+20337941 | MS.gene052850:CDS |
| ATAGTTATGGTGAATGAAAG+TGG | 0.542900 | 1.4:-20338603 | None:intergenic |
| GTAATTCTTAGACTCCCAAA+TGG | 0.561023 | 1.4:+20337469 | MS.gene052850:CDS |
| AACTTTGCAGGTAGGAACAA+AGG | 0.563812 | 1.4:+20337924 | MS.gene052850:intron |
| GATGGCAATGTTAATAGTGC+TGG | 0.575875 | 1.4:+20337733 | MS.gene052850:CDS |
| TTGTCACAATCTTACGCTCA+TGG | 0.577647 | 1.4:+20338026 | MS.gene052850:CDS |
| GGCAAATGGCTTCCAACCAG+AGG | 0.587307 | 1.4:-20338523 | None:intergenic |
| CATGCATTGTCACCTCTGGT+TGG | 0.594204 | 1.4:+20338511 | MS.gene052850:CDS |
| TATGCTCTTGAAAAGTCACT+TGG | 0.596669 | 1.4:-20338387 | None:intergenic |
| AAGAGACATAAAGAGTGTCA+TGG | 0.604494 | 1.4:+20339404 | MS.gene052850:CDS |
| TGAGAACATGCCTATGAAAG+TGG | 0.608998 | 1.4:+20338455 | MS.gene052850:CDS |
| ACTTAGAAGGTGGTAATGCG+AGG | 0.619480 | 1.4:+20339234 | MS.gene052850:CDS |
| TTCGTGCAGTTCACAAATGG+GGG | 0.622353 | 1.4:+20339431 | MS.gene052850:CDS |
| ATTCGTGCAGTTCACAAATG+GGG | 0.622898 | 1.4:+20339430 | MS.gene052850:CDS |
| GTTTCAGCAGACTTAGAAGG+TGG | 0.625758 | 1.4:+20339224 | MS.gene052850:intron |
| ATAGTGCTGGCACATCTCAA+AGG | 0.625943 | 1.4:+20337746 | MS.gene052850:CDS |
| CTTAGAAGGTGGTAATGCGA+GGG | 0.643834 | 1.4:+20339235 | MS.gene052850:CDS |
| TCGTGTGAACTCTACTTACC+CGG | 0.650490 | 1.4:+20339277 | MS.gene052850:CDS |
| ATAACTATCACCCAAGCCAA+AGG | 0.651162 | 1.4:+20338618 | MS.gene052850:CDS |
| GCAGAACAAACAACTAGTGG+TGG | 0.662011 | 1.4:-20339619 | None:intergenic |
| GAAGTTGTTGAACTGAGTGA+TGG | 0.670925 | 1.4:+20337715 | MS.gene052850:CDS |
| TTTGCAGGTAGGAACAAAGG+AGG | 0.713031 | 1.4:+20337927 | MS.gene052850:intron |
| GAACATGCCTATGAAAGTGG+AGG | 0.736568 | 1.4:+20338458 | MS.gene052850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAATTATTTAATATTTCA+AGG | + | chr1.4:20339049-20339068 | MS.gene052850:intron | 10.0% |
| !! | CAAAATAAAATAAAATTACA+AGG | - | chr1.4:20337860-20337879 | None:intergenic | 10.0% |
| !!! | AAATAATTTGTAATATATGA+GGG | - | chr1.4:20339040-20339059 | None:intergenic | 10.0% |
| !!! | TAAATAATTTGTAATATATG+AGG | - | chr1.4:20339041-20339060 | None:intergenic | 10.0% |
| !!! | TGTAATTTTATTTTATTTTG+AGG | + | chr1.4:20337860-20337879 | MS.gene052850:intron | 10.0% |
| !! | AAAAAATATAACTTACAAGT+TGG | + | chr1.4:20338546-20338565 | MS.gene052850:CDS | 15.0% |
| !! | AATATCTTAACCTTAAAATA+TGG | - | chr1.4:20337616-20337635 | None:intergenic | 15.0% |
| !! | ACAATAATCATTTATGAATA+AGG | - | chr1.4:20337389-20337408 | None:intergenic | 15.0% |
| !! | ATATCTTAACCTTAAAATAT+GGG | - | chr1.4:20337615-20337634 | None:intergenic | 15.0% |
| !! | ATTATTAACAAATGTATAGT+TGG | - | chr1.4:20337319-20337338 | None:intergenic | 15.0% |
| !!! | AAAAAAGTTACTAGTAATTT+TGG | + | chr1.4:20338319-20338338 | MS.gene052850:intron | 15.0% |
| !!! | AACTTGTAAGTTATATTTTT+TGG | - | chr1.4:20338547-20338566 | None:intergenic | 15.0% |
| !!! | ATAAAATTTAAAACAGAACT+TGG | - | chr1.4:20338980-20338999 | None:intergenic | 15.0% |
| !!! | ATTTTTCAGAGATTTTAAAT+TGG | + | chr1.4:20338856-20338875 | MS.gene052850:intron | 15.0% |
| !!! | CTTTTTTAAATAAAGTTTGA+AGG | - | chr1.4:20338649-20338668 | None:intergenic | 15.0% |
| !!! | TAAGTATAATGTTTTATAGT+AGG | - | chr1.4:20338067-20338086 | None:intergenic | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | + | chr1.4:20337616-20337635 | MS.gene052850:CDS | 15.0% |
| !!! | TTCATCTATGAATTTTATAT+TGG | - | chr1.4:20337668-20337687 | None:intergenic | 15.0% |
| !! | CAATTGATATTAAGCAAATT+TGG | - | chr1.4:20338698-20338717 | None:intergenic | 20.0% |
| !! | TCTATTGTGATGATAATATT+TGG | + | chr1.4:20338764-20338783 | MS.gene052850:CDS | 20.0% |
| !! | TGAAATAGCCAATAAATAAT+AGG | - | chr1.4:20338263-20338282 | None:intergenic | 20.0% |
| !!! | AAGTTATATTTTTTGGCAAA+TGG | - | chr1.4:20338540-20338559 | None:intergenic | 20.0% |
| !!! | ATATTTGGTTTAAGAGAAAT+TGG | + | chr1.4:20337530-20337549 | MS.gene052850:CDS | 20.0% |
| !!! | ATCTATTTTAGCCATTTATA+AGG | - | chr1.4:20337893-20337912 | None:intergenic | 20.0% |
| !!! | CTTGAACTAGTTTTTTTAAT+TGG | - | chr1.4:20339077-20339096 | None:intergenic | 20.0% |
| !!! | GCTTTAGTTTTCAAATATTT+AGG | + | chr1.4:20337586-20337605 | MS.gene052850:CDS | 20.0% |
| !!! | TAACTAAGTTTTCTTACTTT+AGG | + | chr1.4:20338927-20338946 | MS.gene052850:intron | 20.0% |
| !!! | TATTTGGTTTAAGAGAAATT+GGG | + | chr1.4:20337531-20337550 | MS.gene052850:CDS | 20.0% |
| !!! | TTAGTTTTCAAATATTTAGG+TGG | + | chr1.4:20337589-20337608 | MS.gene052850:CDS | 20.0% |
| !!! | TTTTTGTTTTTTAACTTTGC+AGG | + | chr1.4:20337912-20337931 | MS.gene052850:intron | 20.0% |
| ! | AAGTTTCAAAGGTTACATAT+AGG | - | chr1.4:20338186-20338205 | None:intergenic | 25.0% |
| ! | AATATTATGAGAGAACTTGT+AGG | + | chr1.4:20339477-20339496 | MS.gene052850:CDS | 25.0% |
| ! | AGAAATTTGTGGAGAAATAT+TGG | + | chr1.4:20337428-20337447 | MS.gene052850:CDS | 25.0% |
| ! | AGGATTACTTATGTTAAATG+TGG | + | chr1.4:20339301-20339320 | MS.gene052850:intron | 25.0% |
| ! | ATATTTCTCCACAAATTTCT+TGG | - | chr1.4:20337428-20337447 | None:intergenic | 25.0% |
| ! | ATTTGAATGACAACCTTAAA+GGG | + | chr1.4:20338409-20338428 | MS.gene052850:CDS | 25.0% |
| ! | CATAAATTTAAGGAAGATTG+CGG | + | chr1.4:20339515-20339534 | MS.gene052850:CDS | 25.0% |
| ! | GATAATATTTGGAAGAAAAG+AGG | + | chr1.4:20338775-20338794 | MS.gene052850:CDS | 25.0% |
| ! | GTATTTGGCCTATTATTTAT+TGG | + | chr1.4:20338252-20338271 | MS.gene052850:intron | 25.0% |
| ! | TAAACCTTGAATTGAAATAG+AGG | + | chr1.4:20338361-20338380 | MS.gene052850:intron | 25.0% |
| ! | TATTTCTCCACAAATTTCTT+GGG | - | chr1.4:20337427-20337446 | None:intergenic | 25.0% |
| ! | TATTTGAATGACAACCTTAA+AGG | + | chr1.4:20338408-20338427 | MS.gene052850:CDS | 25.0% |
| ! | TTTAACATAAGTAATCCTAC+CGG | - | chr1.4:20339299-20339318 | None:intergenic | 25.0% |
| !! | ATAGGTCATTTAAGTTTCTA+AGG | - | chr1.4:20338168-20338187 | None:intergenic | 25.0% |
| !! | GATTGTGATTTGTAATTGAA+AGG | - | chr1.4:20337297-20337316 | None:intergenic | 25.0% |
| !! | TCATAATATTGCACTTTTAC+AGG | - | chr1.4:20339467-20339486 | None:intergenic | 25.0% |
| !!! | AAGTTTCTAAGGTTTTAGAT+AGG | - | chr1.4:20338157-20338176 | None:intergenic | 25.0% |
| !!! | ATGTAACCTTTGAAACTTAA+AGG | + | chr1.4:20338188-20338207 | MS.gene052850:intron | 25.0% |
| AAGTTTGAAGGAAAAACCTT+TGG | - | chr1.4:20338637-20338656 | None:intergenic | 30.0% | |
| AATTCCTTTGAACAATGACA+AGG | + | chr1.4:20338727-20338746 | MS.gene052850:intron | 30.0% | |
| AGTCTAAGAATTACTGGATT+TGG | - | chr1.4:20337463-20337482 | None:intergenic | 30.0% | |
| ATAACCTTGTCATTGTTCAA+AGG | - | chr1.4:20338734-20338753 | None:intergenic | 30.0% | |
| ATAAGGATATGTAATGCAAC+AGG | - | chr1.4:20337372-20337391 | None:intergenic | 30.0% | |
| ATAGTTATGGTGAATGAAAG+TGG | - | chr1.4:20338606-20338625 | None:intergenic | 30.0% | |
| ATTAATCAGCAAAGAATCTC+TGG | + | chr1.4:20337790-20337809 | MS.gene052850:CDS | 30.0% | |
| ATTTGTAATATATGAGGGAG+AGG | - | chr1.4:20339035-20339054 | None:intergenic | 30.0% | |
| CGAAATCATGAACTACATAA+GGG | + | chr1.4:20337197-20337216 | MS.gene052850:CDS | 30.0% | |
| GATATTTGGTCACAATACAT+TGG | + | chr1.4:20337630-20337649 | MS.gene052850:CDS | 30.0% | |
| GTATCCTCTATTTCAATTCA+AGG | - | chr1.4:20338368-20338387 | None:intergenic | 30.0% | |
| GTTACAAACGTGAAACTTAA+AGG | + | chr1.4:20338219-20338238 | MS.gene052850:intron | 30.0% | |
| TCGAAATCATGAACTACATA+AGG | + | chr1.4:20337196-20337215 | MS.gene052850:CDS | 30.0% | |
| TTAACATAAGTAATCCTACC+GGG | - | chr1.4:20339298-20339317 | None:intergenic | 30.0% | |
| TTCATAGATGAAAGTTGTGA+AGG | + | chr1.4:20337676-20337695 | MS.gene052850:CDS | 30.0% | |
| TTGTCATTGTTCAAAGGAAT+TGG | - | chr1.4:20338728-20338747 | None:intergenic | 30.0% | |
| ! | ATAGGTCCTTTAAGTTTCAA+AGG | - | chr1.4:20338197-20338216 | None:intergenic | 30.0% |
| ! | GACAATTCAAGTTCAAAACT+TGG | - | chr1.4:20338011-20338030 | None:intergenic | 30.0% |
| ! | GAGGTATTCTACCTTATAAA+TGG | + | chr1.4:20337879-20337898 | MS.gene052850:intron | 30.0% |
| ! | TGCTCAACAGGAAATATTTT+GGG | + | chr1.4:20337492-20337511 | MS.gene052850:CDS | 30.0% |
| ! | TTTGCAAAGTCTCTAAAAGA+TGG | + | chr1.4:20337559-20337578 | MS.gene052850:CDS | 30.0% |
| !!! | TGTTTTTTAACTTTGCAGGT+AGG | + | chr1.4:20337916-20337935 | MS.gene052850:intron | 30.0% |
| AAATTCGTGCAGTTCACAAA+TGG | + | chr1.4:20339428-20339447 | MS.gene052850:CDS | 35.0% | |
| AATTCGTGCAGTTCACAAAT+GGG | + | chr1.4:20339429-20339448 | MS.gene052850:CDS | 35.0% | |
| ACATCTCAAAGGAGAAAAAG+TGG | + | chr1.4:20337757-20337776 | MS.gene052850:CDS | 35.0% | |
| ACTATCTTCAAGAACTCTTC+TGG | - | chr1.4:20337176-20337195 | None:intergenic | 35.0% | |
| CATATATACTCGAGAGATCA+TGG | - | chr1.4:20338825-20338844 | None:intergenic | 35.0% | |
| GAACAATGACAAGGTTATGA+AGG | + | chr1.4:20338736-20338755 | MS.gene052850:intron | 35.0% | |
| GTAATTCTTAGACTCCCAAA+TGG | + | chr1.4:20337469-20337488 | MS.gene052850:CDS | 35.0% | |
| GTTTCACGTTTGTAACAGAT+AGG | - | chr1.4:20338215-20338234 | None:intergenic | 35.0% | |
| TATGCTCTTGAAAAGTCACT+TGG | - | chr1.4:20338390-20338409 | None:intergenic | 35.0% | |
| TCATCTGCAAGCATTAGATT+TGG | + | chr1.4:20338432-20338451 | MS.gene052850:CDS | 35.0% | |
| TTTGGGAGTCTAAGAATTAC+TGG | - | chr1.4:20337469-20337488 | None:intergenic | 35.0% | |
| ! | ACAAAGGAGGCATAATTAAG+AGG | + | chr1.4:20337940-20337959 | MS.gene052850:CDS | 35.0% |
| ! | CAAAGGAGGCATAATTAAGA+GGG | + | chr1.4:20337941-20337960 | MS.gene052850:CDS | 35.0% |
| ! | GTGCTCAACAGGAAATATTT+TGG | + | chr1.4:20337491-20337510 | MS.gene052850:CDS | 35.0% |
| ! | TGCAGGTTGGCATAAATTTA+AGG | + | chr1.4:20339505-20339524 | MS.gene052850:CDS | 35.0% |
| ! | TTACGCTCATGGCTATATTT+TGG | + | chr1.4:20338037-20338056 | MS.gene052850:CDS | 35.0% |
| ! | TTTAGGTGGCCCATATTTTA+AGG | + | chr1.4:20337603-20337622 | MS.gene052850:CDS | 35.0% |
| !! | AAGAGACATAAAGAGTGTCA+TGG | + | chr1.4:20339404-20339423 | MS.gene052850:CDS | 35.0% |
| !! | GTTTCGAGTTTGTTTCAGAT+AGG | + | chr1.4:20338105-20338124 | MS.gene052850:intron | 35.0% |
| !! | TCAACAGGAAATATTTTGGG+TGG | + | chr1.4:20337495-20337514 | MS.gene052850:CDS | 35.0% |
| !!! | GGTTTTAGATAGGTCCTTAA+CGG | - | chr1.4:20338147-20338166 | None:intergenic | 35.0% |
| AACTTCACCTCCACTTTCAT+AGG | - | chr1.4:20338468-20338487 | None:intergenic | 40.0% | |
| AACTTTGCAGGTAGGAACAA+AGG | + | chr1.4:20337924-20337943 | MS.gene052850:intron | 40.0% | |
| AATAGGCCAAATACCTTCCT+GGG | - | chr1.4:20338246-20338265 | None:intergenic | 40.0% | |
| ACACGAATCTCGATTGTGTT+CGG | - | chr1.4:20339263-20339282 | None:intergenic | 40.0% | |
| AGAACTTGTAGGTTCTATGC+AGG | + | chr1.4:20339488-20339507 | MS.gene052850:CDS | 40.0% | |
| ATAACTATCACCCAAGCCAA+AGG | + | chr1.4:20338618-20338637 | MS.gene052850:CDS | 40.0% | |
| ATTCGTGCAGTTCACAAATG+GGG | + | chr1.4:20339430-20339449 | MS.gene052850:CDS | 40.0% | |
| ATTTCCTGTTGAGCACCATT+TGG | - | chr1.4:20337487-20337506 | None:intergenic | 40.0% | |
| CTTTCTATCAACCTCCGTTA+AGG | + | chr1.4:20338130-20338149 | MS.gene052850:intron | 40.0% | |
| GAAGTTGTTGAACTGAGTGA+TGG | + | chr1.4:20337715-20337734 | MS.gene052850:CDS | 40.0% | |
| GAGAGTTCCCAAGAAATTTG+TGG | + | chr1.4:20337417-20337436 | MS.gene052850:intron | 40.0% | |
| GATGGCAATGTTAATAGTGC+TGG | + | chr1.4:20337733-20337752 | MS.gene052850:CDS | 40.0% | |
| TAATAGGCCAAATACCTTCC+TGG | - | chr1.4:20338247-20338266 | None:intergenic | 40.0% | |
| TCACAAATGGGGGAAAATCA+TGG | + | chr1.4:20339441-20339460 | MS.gene052850:CDS | 40.0% | |
| TGAAGGAAAAACCTTTGGCT+TGG | - | chr1.4:20338632-20338651 | None:intergenic | 40.0% | |
| TGAGAACATGCCTATGAAAG+TGG | + | chr1.4:20338455-20338474 | MS.gene052850:CDS | 40.0% | |
| TGTGTTTCAGCAGACTTAGA+AGG | + | chr1.4:20339221-20339240 | MS.gene052850:intron | 40.0% | |
| TTGTCACAATCTTACGCTCA+TGG | + | chr1.4:20338026-20338045 | MS.gene052850:CDS | 40.0% | |
| TTTAGATAGGTCCTTAACGG+AGG | - | chr1.4:20338144-20338163 | None:intergenic | 40.0% | |
| TTTCCTGTTGAGCACCATTT+GGG | - | chr1.4:20337486-20337505 | None:intergenic | 40.0% | |
| ! | GAAGATTGCGGATTGAAGAT+TGG | + | chr1.4:20339527-20339546 | MS.gene052850:CDS | 40.0% |
| ! | GAAGGAAAAACCTTTGGCTT+GGG | - | chr1.4:20338631-20338650 | None:intergenic | 40.0% |
| !! | CTTAACGGAGGTTGATAGAA+AGG | - | chr1.4:20338132-20338151 | None:intergenic | 40.0% |
| !! | TGGAAGAAAAGAGGCATTGA+AGG | + | chr1.4:20338784-20338803 | MS.gene052850:CDS | 40.0% |
| !! | TTTGGCTTGGGTGATAGTTA+TGG | - | chr1.4:20338619-20338638 | None:intergenic | 40.0% |
| ACGTGAAACTTAAAGGACCC+AGG | + | chr1.4:20338226-20338245 | MS.gene052850:intron | 45.0% | |
| AGAACATGCATTGTCACCTC+TGG | + | chr1.4:20338507-20338526 | MS.gene052850:CDS | 45.0% | |
| CTTGTAGGTTCTATGCAGGT+TGG | + | chr1.4:20339492-20339511 | MS.gene052850:CDS | 45.0% | |
| GAAACTTAAAGGACCCAGGA+AGG | + | chr1.4:20338230-20338249 | MS.gene052850:intron | 45.0% | |
| GAACATGCCTATGAAAGTGG+AGG | + | chr1.4:20338458-20338477 | MS.gene052850:CDS | 45.0% | |
| GTTTCAGCAGACTTAGAAGG+TGG | + | chr1.4:20339224-20339243 | MS.gene052850:intron | 45.0% | |
| TCGTGTGAACTCTACTTACC+CGG | + | chr1.4:20339277-20339296 | MS.gene052850:CDS | 45.0% | |
| TGCTTGCAGATGACCCTTTA+AGG | - | chr1.4:20338425-20338444 | None:intergenic | 45.0% | |
| TTCGTGCAGTTCACAAATGG+GGG | + | chr1.4:20339431-20339450 | MS.gene052850:CDS | 45.0% | |
| TTTGCAGGTAGGAACAAAGG+AGG | + | chr1.4:20337927-20337946 | MS.gene052850:intron | 45.0% | |
| ! | ACTTAGAAGGTGGTAATGCG+AGG | + | chr1.4:20339234-20339253 | MS.gene052850:CDS | 45.0% |
| ! | CTTAGAAGGTGGTAATGCGA+GGG | + | chr1.4:20339235-20339254 | MS.gene052850:CDS | 45.0% |
| !! | AAAGGACCCAGGAAGGTATT+TGG | + | chr1.4:20338237-20338256 | MS.gene052850:intron | 45.0% |
| !! | ATAGTGCTGGCACATCTCAA+AGG | + | chr1.4:20337746-20337765 | MS.gene052850:CDS | 45.0% |
| !! | ATATTTTGGGTGGAGCGTGA+CGG | + | chr1.4:20337505-20337524 | MS.gene052850:CDS | 45.0% |
| !! | GAGGCATTGAAGGAAGTTCA+AGG | + | chr1.4:20338794-20338813 | MS.gene052850:CDS | 45.0% |
| ACTCCCAAATGGTGCTCAAC+AGG | + | chr1.4:20337480-20337499 | MS.gene052850:CDS | 50.0% | |
| CATGCATTGTCACCTCTGGT+TGG | + | chr1.4:20338511-20338530 | MS.gene052850:CDS | 50.0% | |
| GTGAACTCTACTTACCCGGT+AGG | + | chr1.4:20339281-20339300 | MS.gene052850:intron | 50.0% | |
| TGGAGCGTGACGGTGATATT+TGG | + | chr1.4:20337515-20337534 | MS.gene052850:CDS | 50.0% | |
| GGCAAATGGCTTCCAACCAG+AGG | - | chr1.4:20338526-20338545 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 20337158 | 20339628 | 20337158 | ID=MS.gene052850 |
| chr1.4 | mRNA | 20337158 | 20339628 | 20337158 | ID=MS.gene052850.t1;Parent=MS.gene052850 |
| chr1.4 | exon | 20337158 | 20337226 | 20337158 | ID=MS.gene052850.t1.exon1;Parent=MS.gene052850.t1 |
| chr1.4 | CDS | 20337158 | 20337226 | 20337158 | ID=cds.MS.gene052850.t1;Parent=MS.gene052850.t1 |
| chr1.4 | exon | 20337418 | 20337811 | 20337418 | ID=MS.gene052850.t1.exon2;Parent=MS.gene052850.t1 |
| chr1.4 | CDS | 20337418 | 20337811 | 20337418 | ID=cds.MS.gene052850.t1;Parent=MS.gene052850.t1 |
| chr1.4 | exon | 20337934 | 20338058 | 20337934 | ID=MS.gene052850.t1.exon3;Parent=MS.gene052850.t1 |
| chr1.4 | CDS | 20337934 | 20338058 | 20337934 | ID=cds.MS.gene052850.t1;Parent=MS.gene052850.t1 |
| chr1.4 | exon | 20338381 | 20338639 | 20338381 | ID=MS.gene052850.t1.exon4;Parent=MS.gene052850.t1 |
| chr1.4 | CDS | 20338381 | 20338639 | 20338381 | ID=cds.MS.gene052850.t1;Parent=MS.gene052850.t1 |
| chr1.4 | exon | 20338749 | 20338835 | 20338749 | ID=MS.gene052850.t1.exon5;Parent=MS.gene052850.t1 |
| chr1.4 | CDS | 20338749 | 20338835 | 20338749 | ID=cds.MS.gene052850.t1;Parent=MS.gene052850.t1 |
| chr1.4 | exon | 20339234 | 20339298 | 20339234 | ID=MS.gene052850.t1.exon6;Parent=MS.gene052850.t1 |
| chr1.4 | CDS | 20339234 | 20339298 | 20339234 | ID=cds.MS.gene052850.t1;Parent=MS.gene052850.t1 |
| chr1.4 | exon | 20339383 | 20339628 | 20339383 | ID=MS.gene052850.t1.exon7;Parent=MS.gene052850.t1 |
| chr1.4 | CDS | 20339383 | 20339628 | 20339383 | ID=cds.MS.gene052850.t1;Parent=MS.gene052850.t1 |
| Gene Sequence |
| Protein sequence |
