AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene041027

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041027.t1 MTR_6g061070 66.748 409 82 6 1 358 62 467 0.0 525
MS.gene041027.t1 MTR_1g035520 88.889 99 11 0 260 358 282 380 6.55e-58 194
MS.gene041027.t1 MTR_1g035520 39.223 283 123 7 1 249 116 383 4.96e-51 176
MS.gene041027.t1 MTR_1g035570 35.014 357 215 8 3 358 51 391 9.88e-54 183
MS.gene041027.t1 MTR_1g035620 35.526 380 193 11 3 358 55 406 7.32e-49 171
MS.gene041027.t1 MTR_1g035480 64.957 117 30 2 1 114 61 169 7.17e-43 148
MS.gene041027.t1 MTR_1g035500 63.158 114 40 1 1 114 69 180 9.76e-40 140
MS.gene041027.t1 MTR_1g035640 38.462 260 140 8 3 261 51 291 1.54e-38 144
MS.gene041027.t1 MTR_1g035490 37.815 238 113 10 147 358 97 325 1.78e-38 141
MS.gene041027.t1 MTR_1g033740 64.103 117 33 4 1 114 66 176 1.86e-38 137
MS.gene041027.t1 MTR_1g035470 60.714 112 36 2 1 112 30 133 1.10e-37 133
MS.gene041027.t1 MTR_1g035510 63.158 114 38 3 1 114 30 139 1.51e-37 135
MS.gene041027.t1 MTR_1g035540 82.192 73 13 0 215 287 31 103 2.03e-36 130
MS.gene041027.t1 MTR_1g050845 32.565 347 173 10 3 326 55 363 4.27e-34 134
MS.gene041027.t1 MTR_5g044670 28.413 271 182 7 1 268 60 321 2.21e-23 100
MS.gene041027.t1 MTR_1g035650 41.463 164 75 8 3 163 55 200 2.27e-21 91.7
MS.gene041027.t1 MTR_3g098790 29.457 258 163 7 1 252 57 301 2.73e-20 91.3
MS.gene041027.t1 MTR_1g108780 26.909 275 167 10 9 269 49 303 1.26e-19 90.9
MS.gene041027.t1 MTR_6g043890 31.646 237 138 9 8 234 67 289 1.86e-19 89.0
MS.gene041027.t1 MTR_8g103940 24.638 414 231 17 9 356 91 489 1.32e-18 87.8
MS.gene041027.t1 MTR_7g050710 29.323 266 161 9 1 252 57 309 4.65e-18 84.7
MS.gene041027.t1 MTR_7g050560 26.848 257 162 7 1 252 57 292 3.90e-16 79.0
MS.gene041027.t1 MTR_7g050590 29.231 260 169 9 1 252 30 282 8.29e-16 77.8
MS.gene041027.t1 MTR_3g061310 27.888 251 154 9 3 248 56 284 1.26e-14 74.3
MS.gene041027.t1 MTR_3g061350 28.346 254 148 11 3 248 56 283 2.17e-14 73.6
MS.gene041027.t1 MTR_1g035460 25.912 274 175 10 9 264 38 301 7.02e-14 73.2
MS.gene041027.t1 MTR_7g050580 28.682 258 156 11 1 252 57 292 3.44e-13 70.1
MS.gene041027.t1 MTR_3g061370 29.730 259 138 11 3 248 53 280 6.08e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 70 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATAATTTGAGAGTGAAAT+TGG 0.170501 1.2:+19718971 None:intergenic
TGCAATGCGGTTATGATATT+TGG 0.243865 1.2:-19719629 MS.gene041027:CDS
GTTGAAGAATCTTTAATTAA+AGG 0.260214 1.2:+19717344 None:intergenic
GGGCAGGGTTCCTTTGTGGC+TGG 0.299989 1.2:+19718413 None:intergenic
AAAAGACATAATATATTTAG+TGG 0.334344 1.2:-19717798 MS.gene041027:CDS
GGAAGGTGATAGATTAAAAT+TGG 0.340370 1.2:-19718937 MS.gene041027:intron
TATAATGAACATCTCGACTA+TGG 0.355043 1.2:-19717723 MS.gene041027:CDS
CTCTGGGCAGGGTTCCTTTG+TGG 0.360778 1.2:+19718409 None:intergenic
TTGAATTGGTCATGTAAATT+CGG 0.365554 1.2:+19717956 None:intergenic
AATTCGGTGGAGTTGAAAAT+AGG 0.372119 1.2:-19717774 MS.gene041027:CDS
GGCAGGGTTCCTTTGTGGCT+GGG 0.376943 1.2:+19718414 None:intergenic
TTCGGTAATTTCACTGTCAT+TGG 0.384317 1.2:+19719431 None:intergenic
TAATATATTTAGTGGAAATT+CGG 0.396970 1.2:-19717790 MS.gene041027:CDS
GAAATACCTTGAAACTGCTC+TGG 0.423422 1.2:+19718392 None:intergenic
GTGAAATTGGGATTCTCATT+GGG 0.428059 1.2:+19718984 None:intergenic
AGTGAAATTGGGATTCTCAT+TGG 0.432342 1.2:+19718983 None:intergenic
ACCTTGAAACTGCTCTGGGC+AGG 0.439680 1.2:+19718397 None:intergenic
GAATTTACATGACCAATTCA+AGG 0.445932 1.2:-19717954 MS.gene041027:CDS
AAATCAGAAGGCAGTCCAAC+AGG 0.448615 1.2:-19717413 MS.gene041027:CDS
GGTCTGTGTGCAAAATGAAT+TGG 0.448911 1.2:-19719653 None:intergenic
CAAATTATCGCGATCTTATG+TGG 0.458151 1.2:-19718958 MS.gene041027:CDS
CTCAAACAAGCAAGTGTCTC+CGG 0.460221 1.2:+19717650 None:intergenic
CATCAAGACATTGTCTTCCT+CGG 0.464836 1.2:-19717370 MS.gene041027:CDS
GATAATTTGAGAGTGAAATT+GGG 0.465805 1.2:+19718972 None:intergenic
ATAGTAATTGTGAATGAAAG+TGG 0.468831 1.2:+19718440 None:intergenic
AATAACTTTGAAATTACAGC+TGG 0.470091 1.2:-19718536 MS.gene041027:CDS
CTAATAGAAACAATGGAGAC+AGG 0.476815 1.2:-19719073 MS.gene041027:CDS
AATCTGACCCTCCTTTGTAC+TGG 0.482912 1.2:+19719550 None:intergenic
TGATGAACCTTGAGGATTGG+AGG 0.498298 1.2:+19717388 None:intergenic
CCCTGCCCAGAGCAGTTTCA+AGG 0.500003 1.2:-19718398 MS.gene041027:intron
TGAAAATAGGAGAAGGAACA+TGG 0.504948 1.2:-19717761 MS.gene041027:CDS
GTCTGTGTGCAAAATGAATT+GGG 0.510202 1.2:-19719652 None:intergenic
TCTTGATGAACCTTGAGGAT+TGG 0.514076 1.2:+19717385 None:intergenic
TGTGCAAAATCATGTGTTCA+AGG 0.521657 1.2:-19717619 MS.gene041027:intron
AAGGAACATGACTTGCAAGT+TGG 0.533438 1.2:-19718497 MS.gene041027:CDS
GAGAGTGCTGCTACACCTCA+AGG 0.536330 1.2:-19719375 MS.gene041027:CDS
GACTATGGATGGTTCACTAA+AGG 0.536976 1.2:-19717708 MS.gene041027:CDS
ACACCTCAAGGGACAAGCAT+TGG 0.540284 1.2:-19719363 MS.gene041027:CDS
TTGCCAATGCTTGTCCCTTG+AGG 0.544193 1.2:+19719360 None:intergenic
TATATTTAGTGGAAATTCGG+TGG 0.544355 1.2:-19717787 MS.gene041027:CDS
ACTTTGAAATTACAGCTGGT+TGG 0.547063 1.2:-19718532 MS.gene041027:CDS
AATGCAATGATTAGAAGCAC+TGG 0.557729 1.2:-19718605 MS.gene041027:CDS
TGAATTGGAAAAGATTTGCA+CGG 0.558326 1.2:-19719602 MS.gene041027:CDS
ATGGATGGTTCACTAAAGGC+TGG 0.558556 1.2:-19717704 MS.gene041027:CDS
AGAGATTGTAAAGTAAAGAC+CGG 0.560191 1.2:-19717669 MS.gene041027:CDS
CCTTGAAACTGCTCTGGGCA+GGG 0.560907 1.2:+19718398 None:intergenic
TACATGAGTGAGCTGTTGCA+AGG 0.564294 1.2:-19718629 MS.gene041027:CDS
ATGAACATCTCGACTATGGA+TGG 0.566956 1.2:-19717719 MS.gene041027:CDS
AAGAAAAGAGGAAAATCAGA+AGG 0.567246 1.2:-19717425 MS.gene041027:CDS
TGAGGATTGGAGGTACCTGT+TGG 0.568799 1.2:+19717398 None:intergenic
GCAGAGGCTAATAGAAACAA+TGG 0.580274 1.2:-19719080 MS.gene041027:intron
TTAGAAGCACTGGTGAGGAC+AGG 0.585346 1.2:-19718595 MS.gene041027:CDS
AAATACCTTGAAACTGCTCT+GGG 0.593332 1.2:+19718393 None:intergenic
TTTGCACGGTCGCTTAGATG+CGG 0.593941 1.2:-19719588 MS.gene041027:CDS
TTATCGCGATCTTATGTGGA+AGG 0.597524 1.2:-19718954 MS.gene041027:CDS
AATATTGTTTGCTAGTGTCG+TGG 0.612366 1.2:+19719460 None:intergenic
ACATGAGTGAGCTGTTGCAA+GGG 0.614327 1.2:-19718628 MS.gene041027:CDS
TCTTTAATTAAAGGCGACCG+AGG 0.627617 1.2:+19717353 None:intergenic
CAATGTCTTGATGAACCTTG+AGG 0.630838 1.2:+19717380 None:intergenic
ACAGGTACCTCCAATCCTCA+AGG 0.635221 1.2:-19717395 MS.gene041027:CDS
GCACTGGTGAGGACAGGACG+TGG 0.639691 1.2:-19718589 MS.gene041027:CDS
AGAGTGCTGCTACACCTCAA+GGG 0.641943 1.2:-19719374 MS.gene041027:CDS
TAATAGAAACAATGGAGACA+GGG 0.645437 1.2:-19719072 MS.gene041027:CDS
TACTATTATCCCAGCCACAA+AGG 0.646969 1.2:-19718423 MS.gene041027:CDS
GTGGAGTTGAAAATAGGAGA+AGG 0.647534 1.2:-19717768 MS.gene041027:CDS
AATGATTAGAAGCACTGGTG+AGG 0.660410 1.2:-19718600 MS.gene041027:CDS
GTATTCTTTCGAAAACCACG+TGG 0.710259 1.2:+19718649 None:intergenic
TATTCTTTCGAAAACCACGT+GGG 0.736746 1.2:+19718650 None:intergenic
AAAATGAATTGGGTGCAATG+CGG 0.797500 1.2:-19719642 MS.gene041027:CDS
TGAAACAGAGGATACCCACG+TGG 0.823355 1.2:-19718664 MS.gene041027:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATATTACTAACAAAAT+AGG + chr1.2:19718202-19718221 None:intergenic 10.0%
!!! ATTTTGTTAGTAATATTTAA+GGG - chr1.2:19718202-19718221 MS.gene041027:intron 10.0%
!!! TATTTCTTTCATTATTATTT+TGG - chr1.2:19718620-19718639 MS.gene041027:CDS 10.0%
!!! TATTTTGTTAGTAATATTTA+AGG - chr1.2:19718201-19718220 MS.gene041027:intron 10.0%
!! AAAAGACATAATATATTTAG+TGG - chr1.2:19719197-19719216 MS.gene041027:intron 15.0%
!! TAATATATTTAGTGGAAATT+CGG - chr1.2:19719205-19719224 MS.gene041027:intron 15.0%
!!! AATTATTTTCAGCATTTAAA+AGG + chr1.2:19717884-19717903 None:intergenic 15.0%
!!! CTTAAAAAAAAAAAAGGTAT+AGG + chr1.2:19718091-19718110 None:intergenic 15.0%
!! AATAGTATGTTTACATTACA+TGG + chr1.2:19718763-19718782 None:intergenic 20.0%
!!! ATGTACTTTTGTAATTTGTA+TGG + chr1.2:19717753-19717772 None:intergenic 20.0%
!!! GTTGATTTTCTTTTTTTTCA+GGG + chr1.2:19717594-19717613 None:intergenic 20.0%
!!! TAATTTAAAGTTTTTTGCAG+AGG - chr1.2:19717899-19717918 MS.gene041027:intron 20.0%
!!! TGTTGATTTTCTTTTTTTTC+AGG + chr1.2:19717595-19717614 None:intergenic 20.0%
!!! TTGATTTTCTTTTTTTTCAG+GGG + chr1.2:19717593-19717612 None:intergenic 20.0%
!!! TTTTAAGTAAATAGCGATTT+TGG - chr1.2:19718104-19718123 MS.gene041027:intron 20.0%
! AAATGCACAAAAACTAAAGA+TGG - chr1.2:19717960-19717979 MS.gene041027:CDS 25.0%
! AACAGAGTAAACATAGTTTA+AGG + chr1.2:19718994-19719013 None:intergenic 25.0%
! AAGTTGAAGAAAAAGAAAAG+AGG - chr1.2:19719558-19719577 MS.gene041027:CDS 25.0%
! AATGCACAAAAACTAAAGAT+GGG - chr1.2:19717961-19717980 MS.gene041027:CDS 25.0%
! ACAGAACTTGAGATAAATAT+AGG + chr1.2:19717725-19717744 None:intergenic 25.0%
! ATAGTAATTGTGAATGAAAG+TGG + chr1.2:19718558-19718577 None:intergenic 25.0%
! ATGTTACAAAAACCTTGAAT+TGG + chr1.2:19719056-19719075 None:intergenic 25.0%
! CAGAACTTGAGATAAATATA+GGG + chr1.2:19717724-19717743 None:intergenic 25.0%
! GATAATTTGAGAGTGAAATT+GGG + chr1.2:19718026-19718045 None:intergenic 25.0%
! GTAATCTTTGAATGTATCTT+TGG + chr1.2:19718241-19718260 None:intergenic 25.0%
! TCACAACATATCAATAAACA+AGG + chr1.2:19719115-19719134 None:intergenic 25.0%
! TTACTAACAAAATAGGCATT+TGG + chr1.2:19718195-19718214 None:intergenic 25.0%
! TTGAATTGGTCATGTAAATT+CGG + chr1.2:19719042-19719061 None:intergenic 25.0%
! TTTGTTCATATATATGCAGT+TGG - chr1.2:19719151-19719170 MS.gene041027:intron 25.0%
!! TTCTTTTTCTTCAACTTTGT+CGG + chr1.2:19719555-19719574 None:intergenic 25.0%
!! TTTGTGTCTTACCATTTTAA+GGG - chr1.2:19719425-19719444 MS.gene041027:CDS 25.0%
!! TTTTGTAACATCATTAGACA+AGG - chr1.2:19719065-19719084 MS.gene041027:CDS 25.0%
!!! AATAACTTTGAAATTACAGC+TGG - chr1.2:19718459-19718478 MS.gene041027:CDS 25.0%
!!! ATGATATTTGGCTTTTGAAT+TGG - chr1.2:19717378-19717397 MS.gene041027:CDS 25.0%
!!! TTACAAAAGTACATGTTTTC+TGG - chr1.2:19717759-19717778 MS.gene041027:CDS 25.0%
AACACAGTTGCAAAATAAAC+TGG + chr1.2:19719489-19719508 None:intergenic 30.0%
AAGAAAAGAGGAAAATCAGA+AGG - chr1.2:19719570-19719589 MS.gene041027:CDS 30.0%
AATGAAAACCTCTCACATTA+AGG + chr1.2:19718132-19718151 None:intergenic 30.0%
ACACAGTTGCAAAATAAACT+GGG + chr1.2:19719488-19719507 None:intergenic 30.0%
ACATATTCCATATCTTCTTC+GGG + chr1.2:19718859-19718878 None:intergenic 30.0%
AGAGATTGTAAAGTAAAGAC+CGG - chr1.2:19719326-19719345 MS.gene041027:CDS 30.0%
ATCCTGTGTAGAAAAGTTTA+AGG - chr1.2:19718722-19718741 MS.gene041027:intron 30.0%
ATTCACTATTTAAATGTGCG+AGG + chr1.2:19718277-19718296 None:intergenic 30.0%
CACATATTCCATATCTTCTT+CGG + chr1.2:19718860-19718879 None:intergenic 30.0%
CGATAATTTGAGAGTGAAAT+TGG + chr1.2:19718027-19718046 None:intergenic 30.0%
GAAGAAGATATGGAATATGT+GGG - chr1.2:19718859-19718878 MS.gene041027:intron 30.0%
GAATTTACATGACCAATTCA+AGG - chr1.2:19719041-19719060 MS.gene041027:CDS 30.0%
GGAAGGTGATAGATTAAAAT+TGG - chr1.2:19718058-19718077 MS.gene041027:intron 30.0%
TAATAGAAACAATGGAGACA+GGG - chr1.2:19717923-19717942 MS.gene041027:intron 30.0%
TATAATGAACATCTCGACTA+TGG - chr1.2:19719272-19719291 MS.gene041027:intron 30.0%
TATATTTAGTGGAAATTCGG+TGG - chr1.2:19719208-19719227 MS.gene041027:intron 30.0%
TGAATTGGAAAAGATTTGCA+CGG - chr1.2:19717393-19717412 MS.gene041027:CDS 30.0%
TTATGTTACACCCCTTAAAA+TGG + chr1.2:19719439-19719458 None:intergenic 30.0%
TTTCATTTCACTATAGGAAC+TGG - chr1.2:19718145-19718164 MS.gene041027:intron 30.0%
TTTCTTGCATTTAAACCAAC+AGG + chr1.2:19719515-19719534 None:intergenic 30.0%
! AACCTTAAACTTTTCTACAC+AGG + chr1.2:19718727-19718746 None:intergenic 30.0%
! AGAGGTTTTCATTTCACTAT+AGG - chr1.2:19718139-19718158 MS.gene041027:intron 30.0%
! GCATTGTCTCTGATTTTATT+TGG + chr1.2:19718837-19718856 None:intergenic 30.0%
! GTTTGTGTCTTACCATTTTA+AGG - chr1.2:19719424-19719443 MS.gene041027:CDS 30.0%
! TTGTGTCTTACCATTTTAAG+GGG - chr1.2:19719426-19719445 MS.gene041027:CDS 30.0%
!! TGTTGGTTTAAATGCAAGAA+AGG - chr1.2:19719514-19719533 MS.gene041027:CDS 30.0%
!!! CTTTTAGTTTTCCAGTACAA+AGG - chr1.2:19717434-19717453 MS.gene041027:CDS 30.0%
!!! TGGTTGGAAGTCATTTTTAA+AGG - chr1.2:19718479-19718498 MS.gene041027:CDS 30.0%
AAATACCTTGAAACTGCTCT+GGG + chr1.2:19718605-19718624 None:intergenic 35.0%
AGTGAAATTGGGATTCTCAT+TGG + chr1.2:19718015-19718034 None:intergenic 35.0%
CAAATTATCGCGATCTTATG+TGG - chr1.2:19718037-19718056 MS.gene041027:intron 35.0%
CGAAGAAGATATGGAATATG+TGG - chr1.2:19718858-19718877 MS.gene041027:intron 35.0%
CTAATAGAAACAATGGAGAC+AGG - chr1.2:19717922-19717941 MS.gene041027:intron 35.0%
GTGAAATTGGGATTCTCATT+GGG + chr1.2:19718014-19718033 None:intergenic 35.0%
TATTCTTTCGAAAACCACGT+GGG + chr1.2:19718348-19718367 None:intergenic 35.0%
TGAAAATAGGAGAAGGAACA+TGG - chr1.2:19719234-19719253 MS.gene041027:intron 35.0%
TGCAATGCGGTTATGATATT+TGG - chr1.2:19717366-19717385 MS.gene041027:CDS 35.0%
TGTGCAAAATCATGTGTTCA+AGG - chr1.2:19719376-19719395 MS.gene041027:CDS 35.0%
TTCGGTAATTTCACTGTCAT+TGG + chr1.2:19717567-19717586 None:intergenic 35.0%
! AATATTGTTTGCTAGTGTCG+TGG + chr1.2:19717538-19717557 None:intergenic 35.0%
! AATGCAATGATTAGAAGCAC+TGG - chr1.2:19718390-19718409 MS.gene041027:intron 35.0%
! AATTCGGTGGAGTTGAAAAT+AGG - chr1.2:19719221-19719240 MS.gene041027:intron 35.0%
! ATGGAATATGTGGGCAATTT+TGG - chr1.2:19718868-19718887 MS.gene041027:intron 35.0%
! TAGTTTTCCAGTACAAAGGA+GGG - chr1.2:19717438-19717457 MS.gene041027:CDS 35.0%
! TGTCTTTTTAACAGCTCACT+TGG + chr1.2:19719185-19719204 None:intergenic 35.0%
! TTTACCTGAGACTTTTTGCT+GGG + chr1.2:19717684-19717703 None:intergenic 35.0%
! TTTTGGTACCTTAATGTGAG+AGG - chr1.2:19718121-19718140 MS.gene041027:intron 35.0%
!! ACTTTGAAATTACAGCTGGT+TGG - chr1.2:19718463-19718482 MS.gene041027:CDS 35.0%
!! CTGATTTTATTTGGACTCGT+TGG + chr1.2:19718828-19718847 None:intergenic 35.0%
!! TTAGTTTTCCAGTACAAAGG+AGG - chr1.2:19717437-19717456 MS.gene041027:CDS 35.0%
!!! CTTTTTTTTCAGGGGTTGTT+CGG + chr1.2:19717585-19717604 None:intergenic 35.0%
ATGAACATCTCGACTATGGA+TGG - chr1.2:19719276-19719295 MS.gene041027:intron 40.0%
CAATGTCTTGATGAACCTTG+AGG + chr1.2:19719618-19719637 None:intergenic 40.0%
CATCAAGACATTGTCTTCCT+CGG - chr1.2:19719625-19719644 MS.gene041027:CDS 40.0%
GAAATACCTTGAAACTGCTC+TGG + chr1.2:19718606-19718625 None:intergenic 40.0%
GACTATGGATGGTTCACTAA+AGG - chr1.2:19719287-19719306 MS.gene041027:intron 40.0%
GCAGAGGCTAATAGAAACAA+TGG - chr1.2:19717915-19717934 MS.gene041027:intron 40.0%
GTATTCTTTCGAAAACCACG+TGG + chr1.2:19718349-19718368 None:intergenic 40.0%
GTGGAGTTGAAAATAGGAGA+AGG - chr1.2:19719227-19719246 MS.gene041027:intron 40.0%
TAAACCTTGAGCTGAAACAG+AGG - chr1.2:19718319-19718338 MS.gene041027:intron 40.0%
TACTATTATCCCAGCCACAA+AGG - chr1.2:19718572-19718591 MS.gene041027:CDS 40.0%
TCTTGATGAACCTTGAGGAT+TGG + chr1.2:19719613-19719632 None:intergenic 40.0%
TTATCGCGATCTTATGTGGA+AGG - chr1.2:19718041-19718060 MS.gene041027:intron 40.0%
! AAGGAACATGACTTGCAAGT+TGG - chr1.2:19718498-19718517 MS.gene041027:CDS 40.0%
! CTTTACCTGAGACTTTTTGC+TGG + chr1.2:19717685-19717704 None:intergenic 40.0%
! TCCTGAGACCATGTGTTTTT+GGG + chr1.2:19718915-19718934 None:intergenic 40.0%
!! AATGATTAGAAGCACTGGTG+AGG - chr1.2:19718395-19718414 MS.gene041027:intron 40.0%
!! TTTGCTTTTGATCCCTGACA+AGG - chr1.2:19718784-19718803 MS.gene041027:intron 40.0%
AAATCAGAAGGCAGTCCAAC+AGG - chr1.2:19719582-19719601 MS.gene041027:CDS 45.0%
AACAGCAGCCCAAAAACACA+TGG - chr1.2:19718904-19718923 MS.gene041027:intron 45.0%
AATCTGACCCTCCTTTGTAC+TGG + chr1.2:19717448-19717467 None:intergenic 45.0%
ACATGAGTGAGCTGTTGCAA+GGG - chr1.2:19718367-19718386 MS.gene041027:intron 45.0%
ATGGATGGTTCACTAAAGGC+TGG - chr1.2:19719291-19719310 MS.gene041027:intron 45.0%
CTCAAACAAGCAAGTGTCTC+CGG + chr1.2:19719348-19719367 None:intergenic 45.0%
GACAATGCCCGAAGAAGATA+TGG - chr1.2:19718849-19718868 MS.gene041027:intron 45.0%
GTATCCTCTGTTTCAGCTCA+AGG + chr1.2:19718326-19718345 None:intergenic 45.0%
TACATGAGTGAGCTGTTGCA+AGG - chr1.2:19718366-19718385 MS.gene041027:intron 45.0%
TGATGAACCTTGAGGATTGG+AGG + chr1.2:19719610-19719629 None:intergenic 45.0%
TGCAACTGTGTTCTTCCTGT+TGG - chr1.2:19719497-19719516 MS.gene041027:CDS 45.0%
! CTCCTGAGACCATGTGTTTT+TGG + chr1.2:19718916-19718935 None:intergenic 45.0%
!! TATTTACTTAAAAAAAAAAA+AGG + chr1.2:19718097-19718116 None:intergenic 5.0%
ACACCTCAAGGGACAAGCAT+TGG - chr1.2:19717632-19717651 MS.gene041027:CDS 50.0%
ACAGGTACCTCCAATCCTCA+AGG - chr1.2:19719600-19719619 MS.gene041027:CDS 50.0%
GCAACCCAGCAAAAAGTCTC+AGG - chr1.2:19717677-19717696 MS.gene041027:CDS 50.0%
GCCCAAAAACACATGGTCTC+AGG - chr1.2:19718911-19718930 MS.gene041027:intron 50.0%
TGAAACAGAGGATACCCACG+TGG - chr1.2:19718331-19718350 MS.gene041027:intron 50.0%
TTGCCAATGCTTGTCCCTTG+AGG + chr1.2:19717638-19717657 None:intergenic 50.0%
TTTGATCCCTGACAAGGCTG+TGG - chr1.2:19718790-19718809 MS.gene041027:intron 50.0%
TTTGCACGGTCGCTTAGATG+CGG - chr1.2:19717407-19717426 MS.gene041027:CDS 50.0%
!! AGAGTGCTGCTACACCTCAA+GGG - chr1.2:19717621-19717640 MS.gene041027:CDS 50.0%
!! TGAGGATTGGAGGTACCTGT+TGG + chr1.2:19719600-19719619 None:intergenic 50.0%
!! TTAGAAGCACTGGTGAGGAC+AGG - chr1.2:19718400-19718419 MS.gene041027:CDS 50.0%
! ACCTTGAAACTGCTCTGGGC+AGG + chr1.2:19718601-19718620 None:intergenic 55.0%
! CCTTGAAACTGCTCTGGGCA+GGG + chr1.2:19718600-19718619 None:intergenic 55.0%
! GCATGTCCACAGCCTTGTCA+GGG + chr1.2:19718799-19718818 None:intergenic 55.0%
! TGCATGTCCACAGCCTTGTC+AGG + chr1.2:19718800-19718819 None:intergenic 55.0%
!! GAGAGTGCTGCTACACCTCA+AGG - chr1.2:19717620-19717639 MS.gene041027:CDS 55.0%
CCCTGCCCAGAGCAGTTTCA+AGG - chr1.2:19718597-19718616 MS.gene041027:CDS 60.0%
CTCTGGGCAGGGTTCCTTTG+TGG + chr1.2:19718589-19718608 None:intergenic 60.0%
GGCAGGGTTCCTTTGTGGCT+GGG + chr1.2:19718584-19718603 None:intergenic 60.0%
GGGCAGGGTTCCTTTGTGGC+TGG + chr1.2:19718585-19718604 None:intergenic 65.0%
! GCACTGGTGAGGACAGGACG+TGG - chr1.2:19718406-19718425 MS.gene041027:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 19717356 19719661 19717356 ID=MS.gene041027
chr1.2 mRNA 19717356 19719661 19717356 ID=MS.gene041027.t1;Parent=MS.gene041027
chr1.2 exon 19719319 19719661 19719319 ID=MS.gene041027.t1.exon1;Parent=MS.gene041027.t1
chr1.2 CDS 19719319 19719661 19719319 ID=cds.MS.gene041027.t1;Parent=MS.gene041027.t1
chr1.2 exon 19718938 19719098 19718938 ID=MS.gene041027.t1.exon2;Parent=MS.gene041027.t1
chr1.2 CDS 19718938 19719098 19718938 ID=cds.MS.gene041027.t1;Parent=MS.gene041027.t1
chr1.2 exon 19718399 19718678 19718399 ID=MS.gene041027.t1.exon3;Parent=MS.gene041027.t1
chr1.2 CDS 19718399 19718678 19718399 ID=cds.MS.gene041027.t1;Parent=MS.gene041027.t1
chr1.2 exon 19717931 19717989 19717931 ID=MS.gene041027.t1.exon4;Parent=MS.gene041027.t1
chr1.2 CDS 19717931 19717989 19717931 ID=cds.MS.gene041027.t1;Parent=MS.gene041027.t1
chr1.2 exon 19717620 19717847 19717620 ID=MS.gene041027.t1.exon5;Parent=MS.gene041027.t1
chr1.2 CDS 19717620 19717847 19717620 ID=cds.MS.gene041027.t1;Parent=MS.gene041027.t1
chr1.2 exon 19717356 19717481 19717356 ID=MS.gene041027.t1.exon6;Parent=MS.gene041027.t1
chr1.2 CDS 19717356 19717481 19717356 ID=cds.MS.gene041027.t1;Parent=MS.gene041027.t1
Gene Sequence

>MS.gene041027

ATGAATTGGGTGCAATGCGGTTATGATATTTGGCTTTTGAATTGGAAAAGATTTGCACGGTCGCTTAGATGCGGTGATCTTTTAGTTTTCCAGTACAAAGGAGGGTCAGATTTTCATGTCATTATATTAGATGATAGTAAATTAGAAATTGACTATTCAAGCATCACATGCAACGATGACCACGACACTAGCAAACAATATTGTAGTACCAATGACAGTGAAATTACCGAACAACCCCTGAAAAAAAAGAAAATCAACACAAATGAGAGTGCTGCTACACCTCAAGGGACAAGCATTGGCAAGAGAAAATATCAAATGAATGCAACCCAGCAAAAAGTCTCAGGTAAAGTATGTTTTTAGTTAGTCCCTATATTTATCTCAAGTTCTGTTTAATCCATACAAATTACAAAAGTACATGTTTTCTGGAATTTACTTGCTTTATTTATTTTGTTTTTTTAAGATTTAATCAATTTCATGACTGTTATAAAAAATAAAATTTTCAAGAGCTGAAAATTTAATTTTGTACCTTTTAAATGCTGAAAATAATTTAAAGTTTTTTGCAGAGGCTAATAGAAACAATGGAGACAGGGATAAGAAAGCTAAGAAATGCACAAAAACTAAAGATGGGAATGAGAGAAGTTACACAAATTCTCATCCCAATGAGAATCCCAATTTCACTCTCAAATTATCGCGATCTTATGTGGAAGGTGATAGATTAAAATTGGTATGTTTCCTATACCTTTTTTTTTTTTAAGTAAATAGCGATTTTGGTACCTTAATGTGAGAGGTTTTCATTTCACTATAGGAACTGGATGTATTGAAATTACAAACAAACACCAAATGCCTATTTTGTTAGTAATATTTAAGGGCGAAAGTAATTAACCAAAGATACATTCAAAGATTACTGATGCGACAAAGCCTCGCACATTTAAATAGTGAATATATTTTTATTAATATATATTTTAAACCTTGAGCTGAAACAGAGGATACCCACGTGGTTTTCGAAAGAATACATGAGTGAGCTGTTGCAAGGGAATGCAATGATTAGAAGCACTGGTGAGGACAGGACGTGGTATGTGACGTTAAAATTTGATGAACGCAATAATAACTTTGAAATTACAGCTGGTTGGAAGTCATTTTTAAAGGAACATGACTTGCAAGTTGGTGATGTATGTAAATTTGAGATGACTCAACGCGAACCACTTTCATTCACAATTACTATTATCCCAGCCACAAAGGAACCCTGCCCAGAGCAGTTTCAAGGTATTTCTTTCATTATTATTTTGGAAGAATCACATTTTAACAGTTTAATTTCAATACATTTGATCAATGTAAATAGTTTTAATGTGTCAACAAATTACAATAAATCCTGTGTAGAAAAGTTTAAGGTTTAAATATATCTGTCCATGTAATGTAAACATACTATTCTTTGCTTTTGATCCCTGACAAGGCTGTGGACATGCAGAAAACCAACGAGTCCAAATAAAATCAGAGACAATGCCCGAAGAAGATATGGAATATGTGGGCAATTTTGGAGAACGAATTTCAAACAGCAGCCCAAAAACACATGGTCTCAGGAGTATTCATCTTTATTTCATTTTTCAAGCTTTTATTGTGTACAATTCATGAAAATATCCTTAAACTATGTTTACTCTGTTCTTAATTACTGCAGATTCTGTAAGTCCGAATTTACATGACCAATTCAAGGTTTTTGTAACATCATTAGACAAGGTATGAATTACTTAAAATGTTGTTACCTTGTTTATTGATATGTTGTGAATGTAAAACTTTTTAATTTGTTCATATATATGCAGTTGGTTGTACTACCAAGTGAGCTGTTAAAAAGACATAATATATTTAGTGGAAATTCGGTGGAGTTGAAAATAGGAGAAGGAACATGGTTTGTAGATGTGAGTTATAATGAACATCTCGACTATGGATGGTTCACTAAAGGCTGGCAAGAATTTGTGAGAGATTGTAAAGTAAAGACCGGAGACACTTGCTTGTTTGAGACGATTGATGTGCAAAATCATGTGTTCAAGGTTTCAATTGTTTGAGATACTTGCTTGTTTGTGTCTTACCATTTTAAGGGGTGTAACATAAAATGTAAATATTCTCTAATTGCGAGACCCAGTTTATTTTGCAACTGTGTTCTTCCTGTTGGTTTAAATGCAAGAAAGGTTCAGCAAGATACATCCGACAAAGTTGAAGAAAAAGAAAAGAGGAAAATCAGAAGGCAGTCCAACAGGTACCTCCAATCCTCAAGGTTCATCAAGACATTGTCTTCCTCGGTCGCCTTTAATTAA
Protein sequence

>MS.gene041027.t1

MNWVQCGYDIWLLNWKRFARSLRCGDLLVFQYKGGSDFHVIILDDSKLEIDYSSITCNDDHDTSKQYCSTNDSEITEQPLKKKKINTNESAATPQGTSIGKRKYQMNATQQKVSEANRNNGDRDKKAKKCTKTKDGNERSYTNSHPNENPNFTLKLSRSYVEGDRLKLRIPTWFSKEYMSELLQGNAMIRSTGEDRTWYVTLKFDERNNNFEITAGWKSFLKEHDLQVGDVCKFEMTQREPLSFTITIIPATKEPCPEQFQDSVSPNLHDQFKVFVTSLDKLVVLPSELLKRHNIFSGNSVELKIGEGTWFVDVSYNEHLDYGWFTKGWQEFVRDCKVKTGDTCLFETIDVQNHVFKVQQDTSDKVEEKEKRKIRRQSNRYLQSSRFIKTLSSSVAFN