AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31880.t1 MTR_1g035570 81.980 394 59 2 1 382 1 394 0.0 642
MS.gene31880.t1 MTR_1g035490 63.863 321 65 7 104 381 15 327 3.16e-125 364
MS.gene31880.t1 MTR_1g035640 51.917 339 136 4 1 321 1 330 1.20e-111 335
MS.gene31880.t1 MTR_1g035640 47.368 95 25 1 287 381 394 463 5.88e-16 79.7
MS.gene31880.t1 MTR_1g035620 45.215 418 182 10 1 381 1 408 1.08e-108 325
MS.gene31880.t1 MTR_1g050845 44.125 383 155 10 1 346 1 361 1.53e-86 280
MS.gene31880.t1 MTR_6g061070 32.816 451 212 12 14 381 27 469 3.91e-60 202
MS.gene31880.t1 MTR_1g035650 42.466 219 86 6 1 195 1 203 1.64e-44 153
MS.gene31880.t1 MTR_3g098790 33.333 285 160 7 14 275 22 299 5.24e-35 131
MS.gene31880.t1 MTR_5g044670 30.104 289 175 7 14 280 25 308 6.79e-34 129
MS.gene31880.t1 MTR_7g050710 31.579 304 164 9 8 275 12 307 6.79e-34 128
MS.gene31880.t1 MTR_7g050560 36.264 273 159 9 14 275 22 290 1.28e-32 125
MS.gene31880.t1 MTR_8g103940 29.276 304 174 10 14 285 48 342 2.12e-30 122
MS.gene31880.t1 MTR_7g050580 34.409 279 156 9 14 275 22 290 2.20e-30 119
MS.gene31880.t1 MTR_1g035480 41.096 146 73 3 14 155 26 162 3.20e-30 114
MS.gene31880.t1 MTR_7g050590 34.507 284 152 10 21 275 2 280 1.75e-29 116
MS.gene31880.t1 MTR_7g050720 30.421 309 156 10 14 275 19 315 1.23e-28 114
MS.gene31880.t1 MTR_3g061350 28.622 283 173 11 9 273 12 283 6.35e-28 111
MS.gene31880.t1 MTR_1g033740 36.000 150 79 3 14 156 31 170 1.71e-27 107
MS.gene31880.t1 MTR_1g108780 30.743 296 156 10 20 279 12 294 3.58e-27 112
MS.gene31880.t1 MTR_3g061310 27.899 276 185 8 9 273 12 284 1.16e-26 108
MS.gene31880.t1 MTR_3g061320 27.206 272 186 7 9 273 12 278 2.94e-26 107
MS.gene31880.t1 MTR_3g061340 26.259 278 176 11 9 273 12 273 6.28e-26 105
MS.gene31880.t1 MTR_1g035510 43.966 116 56 2 21 136 2 108 1.36e-25 103
MS.gene31880.t1 MTR_3g061370 28.014 282 176 11 9 273 9 280 3.04e-24 101
MS.gene31880.t1 MTR_6g043890 27.612 268 172 6 13 259 23 289 4.84e-24 102
MS.gene31880.t1 MTR_1g035500 39.535 129 69 2 14 142 34 153 5.65e-24 98.2
MS.gene31880.t1 MTR_1g035460 26.712 292 171 6 21 275 2 287 7.09e-24 102
MS.gene31880.t1 MTR_1g035470 41.964 112 62 2 21 130 2 112 7.92e-23 93.6
MS.gene31880.t1 MTR_1g035520 26.333 300 169 6 21 273 88 382 2.14e-22 97.8
MS.gene31880.t1 MTR_1g035520 42.391 92 49 2 294 381 291 382 1.65e-13 71.6
MS.gene31880.t1 MTR_4g119990 27.815 302 150 10 9 261 15 297 1.38e-21 95.5
MS.gene31880.t1 MTR_3g061330 28.079 203 134 6 9 201 12 212 3.68e-21 92.0
MS.gene31880.t1 MTR_3g061290 37.705 122 69 4 9 126 12 130 1.28e-19 86.7
MS.gene31880.t1 MTR_3g005480 24.907 269 157 8 14 275 30 260 3.80e-16 78.2
MS.gene31880.t1 MTR_7g050640 41.441 111 55 4 3 103 5 115 7.36e-14 68.2
MS.gene31880.t1 MTR_4g068320 35.294 136 78 4 7 136 4 135 1.68e-13 72.0
MS.gene31880.t1 MTR_5g070440 23.507 268 172 6 14 276 30 269 2.00e-13 70.5
MS.gene31880.t1 MTR_3g005490 23.048 269 167 7 14 278 30 262 3.79e-13 69.3
MS.gene31880.t1 MTR_3g005420 25.843 267 167 8 14 276 298 537 5.60e-12 67.4
MS.gene31880.t1 MTR_1g034240 33.333 111 67 3 7 110 5 115 9.74e-12 66.6
MS.gene31880.t1 MTR_3g005460 24.638 276 161 10 14 273 271 515 1.30e-11 66.2
MS.gene31880.t1 MTR_1g035440 35.165 91 56 2 14 101 24 114 7.27e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31880.t1 AT3G18990 25.664 339 182 9 7 278 4 339 1.29e-21 95.5
MS.gene31880.t1 AT3G18990 25.893 336 179 9 7 275 4 336 1.40e-21 95.1

Find 74 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTTGCTGTGCTTCTTTA+AGG 0.097830 1.2:-20447890 MS.gene31880:CDS
CAACACCGTTTGGAAATTTA+AGG 0.151014 1.2:+20449635 None:intergenic
CTTTGGGATTGCTTCGTTTC+CGG 0.165431 1.2:+20448570 None:intergenic
TTTGCAAAGTCTTTCAAATA+TGG 0.208675 1.2:-20449550 MS.gene31880:CDS
TATTTCTCCGCATATTTCTT+AGG 0.215711 1.2:+20449685 None:intergenic
TTAAAACCTAGTAGTTTCTT+TGG 0.230973 1.2:+20448553 None:intergenic
TTTGGAAATTTAAGGAATAT+TGG 0.239838 1.2:+20449643 None:intergenic
AGAAATATGCGGAGAAATAT+TGG 0.263999 1.2:-20449681 MS.gene31880:CDS
TTAATGGAACTGCAACAATA+AGG 0.270673 1.2:-20448771 MS.gene31880:CDS
TTCATCAACTGATTTGATAT+TGG 0.273749 1.2:+20449444 None:intergenic
ACATAACACATTCAAGGTTT+TGG 0.285361 1.2:-20448242 MS.gene31880:CDS
TGGAGAGTAATGGTGATATT+TGG 0.287546 1.2:-20449594 MS.gene31880:CDS
TTGGAGATACTTGTCTCTTT+AGG 0.296651 1.2:-20447947 MS.gene31880:CDS
TTACGTCAATGGCTATTTCT+TGG 0.299414 1.2:-20448907 MS.gene31880:intron
CTTGCCCTTTGAACTTGCTT+TGG 0.300449 1.2:+20449334 None:intergenic
CTCTTAACTTTCAAATTCAT+TGG 0.314459 1.2:-20449523 MS.gene31880:CDS
TTGGAAATTTAAGGAATATT+GGG 0.324170 1.2:+20449644 None:intergenic
GTGGTGGTTGGAAAATATTC+AGG 0.328531 1.2:-20448681 MS.gene31880:CDS
TTATAAAGAAAGATCTTGTT+TGG 0.355178 1.2:-20448704 MS.gene31880:CDS
GAGGTTAGTTTGAGGTATTA+TGG 0.363534 1.2:-20448727 MS.gene31880:CDS
AATATTATTCTATGAAAATC+TGG 0.366274 1.2:+20449832 None:intergenic
TAAAACCTAGTAGTTTCTTT+GGG 0.368375 1.2:+20448554 None:intergenic
TAATGGAACTGCAACAATAA+GGG 0.385781 1.2:-20448770 MS.gene31880:CDS
ATAATTTATTTCTAAAGTAT+TGG 0.398912 1.2:+20449468 None:intergenic
ATTGTGACAATGAATGAAAA+AGG 0.410109 1.2:+20448601 None:intergenic
GCAAGTTCAAAGGGCAAGAA+AGG 0.419471 1.2:-20449329 MS.gene31880:CDS
ACAGCTTCAGATTGTGCCAT+TGG 0.421914 1.2:+20448969 None:intergenic
GTGTTATGTTTCATCACATC+AGG 0.425287 1.2:+20448256 None:intergenic
TATAAAGAAAGATCTTGTTT+GGG 0.427295 1.2:-20448703 MS.gene31880:CDS
GATGAAACATAACACATTCA+AGG 0.454763 1.2:-20448248 MS.gene31880:CDS
CAGCTTCAGATTGTGCCATT+GGG 0.460205 1.2:+20448970 None:intergenic
AAAGAATGCAATGTGGAGAT+TGG 0.464528 1.2:-20447966 MS.gene31880:CDS
TGTCATTATAACTTCAAAAG+AGG 0.475259 1.2:+20448935 None:intergenic
TTAACTTTCAAATTCATTGG+TGG 0.475675 1.2:-20449520 MS.gene31880:CDS
AGTATTCGTGGCTGTAGGTT+CGG 0.481056 1.2:-20448011 MS.gene31880:CDS
GCTGTAGGTTCGGTAAAGAT+TGG 0.487428 1.2:-20448001 MS.gene31880:CDS
GGTGCTGAAGCCACTGAAGA+AGG 0.489506 1.2:-20449421 MS.gene31880:CDS
CCAAAGGAGTTTATGAAAAG+AGG 0.490308 1.2:-20448104 MS.gene31880:CDS
GCAATCCCAAAGAAACTACT+AGG 0.493084 1.2:-20448559 MS.gene31880:intron
GATCTTGTTTGGGTGGTGGT+TGG 0.501988 1.2:-20448693 MS.gene31880:CDS
GTCATTATAACTTCAAAAGA+GGG 0.507540 1.2:+20448936 None:intergenic
GGAGTGTGGAGGTTAGTTTG+AGG 0.513468 1.2:-20448735 MS.gene31880:CDS
ACTTTCTTTACCTTCTTCAG+TGG 0.514754 1.2:+20449411 None:intergenic
AACTATTATGAGAGTATTCG+TGG 0.521105 1.2:-20448023 MS.gene31880:CDS
CTCATCACTCTCTTCTTCAG+TGG 0.522716 1.2:+20449378 None:intergenic
TTTGGTGAAGAGCACAGCCC+CGG 0.523538 1.2:-20448224 MS.gene31880:intron
AGGATGTCATGAAAATATTG+TGG 0.531604 1.2:-20448084 MS.gene31880:CDS
ATTGTCACAATTACTCGTGC+CGG 0.532896 1.2:-20448589 MS.gene31880:CDS
ATGACACAATCTTACGTCAA+TGG 0.537902 1.2:-20448918 MS.gene31880:CDS
AAAGAAAGATCTTGTTTGGG+TGG 0.538945 1.2:-20448700 MS.gene31880:CDS
AATATCAAATCAGTTGATGA+AGG 0.540855 1.2:-20449442 MS.gene31880:CDS
ATATTCCTTAAATTTCCAAA+CGG 0.542665 1.2:-20449640 MS.gene31880:CDS
AAGGGCAAGAGAAAATTCTC+AGG 0.544762 1.2:-20449310 MS.gene31880:intron
GAAAGATCTTGTTTGGGTGG+TGG 0.546468 1.2:-20448697 MS.gene31880:CDS
CAATAAGGGTTGGTAATGAA+AGG 0.551596 1.2:-20448756 MS.gene31880:CDS
GAGTGATGAGAGTTCAGATG+AGG 0.552149 1.2:-20449365 MS.gene31880:CDS
TCTTTAGGTTAATTGATGAA+AGG 0.553116 1.2:-20447932 MS.gene31880:CDS
AATGCCAAAGCAAGTTCAAA+GGG 0.555536 1.2:-20449338 MS.gene31880:CDS
CAAGTTCAAAGGGCAAGAAA+GGG 0.556600 1.2:-20449328 MS.gene31880:CDS
GTAAATTTGAGATGATTCGA+CGG 0.557247 1.2:-20448627 MS.gene31880:CDS
AAATGCCAAAGCAAGTTCAA+AGG 0.559020 1.2:-20449339 MS.gene31880:CDS
GTATTTGCAGACTGTACCAA+AGG 0.572448 1.2:-20448120 MS.gene31880:intron
GGAACTGCAACAATAAGGGT+TGG 0.581562 1.2:-20448766 MS.gene31880:CDS
GAGAAAGTCATGGTTCGTAA+AGG 0.590660 1.2:-20448048 MS.gene31880:CDS
AGAAGGTAAAGAAAGTGATG+AGG 0.601536 1.2:-20449404 MS.gene31880:CDS
TGGTGGTTGGAAAATATTCA+GGG 0.603185 1.2:-20448680 MS.gene31880:CDS
AGTTAGTAACAAAGTGAGCA+TGG 0.605994 1.2:-20449012 MS.gene31880:CDS
GGTTGGTAATGAAAGGAGTG+TGG 0.615653 1.2:-20448749 MS.gene31880:CDS
ATGAGAGTATTCGTGGCTGT+AGG 0.616385 1.2:-20448016 MS.gene31880:CDS
TATGCGGAGAAATATTGGAA+AGG 0.627004 1.2:-20449676 MS.gene31880:CDS
TGGTAATGAAAGGAGTGTGG+AGG 0.642373 1.2:-20448746 MS.gene31880:CDS
GAAGCCTAGAAAATACCCAA+TGG 0.693832 1.2:-20448985 MS.gene31880:CDS
GAGGGTTCCTAAGAAATATG+CGG 0.695694 1.2:-20449692 MS.gene31880:CDS
ATTCATGAAAGAATGCAATG+TGG 0.699756 1.2:-20447973 MS.gene31880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTATTTCTAAAGTAT+TGG + chr1.2:20448269-20448288 None:intergenic 10.0%
!! AATATTATTCTATGAAAATC+TGG + chr1.2:20447905-20447924 None:intergenic 15.0%
!!! ATAAAAATATGTGACTTTTT+TGG - chr1.2:20448617-20448636 MS.gene31880:CDS 15.0%
!!! ATATTTGGTTTCAAAAAAAT+TGG - chr1.2:20448155-20448174 MS.gene31880:intron 15.0%
!!! CAAATATCTCTAAATTTTTT+GGG - chr1.2:20449396-20449415 MS.gene31880:CDS 15.0%
!!! GAAAAATATAATTTTCAAGT+TGG - chr1.2:20449076-20449095 MS.gene31880:intron 15.0%
!!! TATTTGGTTTCAAAAAAATT+GGG - chr1.2:20448156-20448175 MS.gene31880:intron 15.0%
!!! TATTTTAAGGTTAAGATATT+TGG - chr1.2:20448241-20448260 MS.gene31880:CDS 15.0%
!!! TCAAATATCTCTAAATTTTT+TGG - chr1.2:20449395-20449414 MS.gene31880:CDS 15.0%
!!! TGTTGAACAAAAAATATTTT+GGG - chr1.2:20448117-20448136 MS.gene31880:intron 15.0%
!! AAATATTGTGGAGTTAAAAA+TGG - chr1.2:20449662-20449681 MS.gene31880:CDS 20.0%
!! AATATTGTGGAGTTAAAAAT+GGG - chr1.2:20449663-20449682 MS.gene31880:CDS 20.0%
!! AGAAATCATACATTAACAAT+AGG + chr1.2:20448006-20448025 None:intergenic 20.0%
!! ATATTCCTTAAATTTCCAAA+CGG - chr1.2:20448094-20448113 MS.gene31880:CDS 20.0%
!! ATGAAAAAGGTTATAAGAAA+GGG - chr1.2:20449251-20449270 MS.gene31880:intron 20.0%
!! GAAATCATACATTAACAATA+GGG + chr1.2:20448005-20448024 None:intergenic 20.0%
!! GATCACTTGAAAAAATTTAA+TGG - chr1.2:20448947-20448966 MS.gene31880:CDS 20.0%
!! TAAACATACAATATACAGTT+AGG + chr1.2:20449340-20449359 None:intergenic 20.0%
!! TATGAAAAAGGTTATAAGAA+AGG - chr1.2:20449250-20449269 MS.gene31880:intron 20.0%
!! TTATAAAGAAAGATCTTGTT+TGG - chr1.2:20449030-20449049 MS.gene31880:intron 20.0%
!! TTGGAAATTTAAGGAATATT+GGG + chr1.2:20448093-20448112 None:intergenic 20.0%
!! TTTGGAAATTTAAGGAATAT+TGG + chr1.2:20448094-20448113 None:intergenic 20.0%
!!! GTGTTGAACAAAAAATATTT+TGG - chr1.2:20448116-20448135 MS.gene31880:intron 20.0%
!!! TATAAAGAAAGATCTTGTTT+GGG - chr1.2:20449031-20449050 MS.gene31880:intron 20.0%
!!! TTTTATGTAATTAATCCTAC+CGG + chr1.2:20449532-20449551 None:intergenic 20.0%
! ATATTGTGGAGTTAAAAATG+GGG - chr1.2:20449664-20449683 MS.gene31880:CDS 25.0%
! ATTGTGACAATGAATGAAAA+AGG + chr1.2:20449136-20449155 None:intergenic 25.0%
! CTCTTAACTTTCAAATTCAT+TGG - chr1.2:20448211-20448230 MS.gene31880:intron 25.0%
! GTCATTATAACTTCAAAAGA+GGG + chr1.2:20448801-20448820 None:intergenic 25.0%
! TAAAACCTAGTAGTTTCTTT+GGG + chr1.2:20449183-20449202 None:intergenic 25.0%
! TGAAAAAGGTTATAAGAAAG+GGG - chr1.2:20449252-20449271 MS.gene31880:intron 25.0%
! TGTCATTATAACTTCAAAAG+AGG + chr1.2:20448802-20448821 None:intergenic 25.0%
! TTAAAACCTAGTAGTTTCTT+TGG + chr1.2:20449184-20449203 None:intergenic 25.0%
! TTAACTTTCAAATTCATTGG+TGG - chr1.2:20448214-20448233 MS.gene31880:intron 25.0%
! TTTATGTAATTAATCCTACC+GGG + chr1.2:20449531-20449550 None:intergenic 25.0%
! TTTGCAAAGTCTTTCAAATA+TGG - chr1.2:20448184-20448203 MS.gene31880:intron 25.0%
!! TCTTTAGGTTAATTGATGAA+AGG - chr1.2:20449802-20449821 MS.gene31880:intron 25.0%
!!! AAATATGTGACTTTTTTGGA+AGG - chr1.2:20448621-20448640 MS.gene31880:CDS 25.0%
!!! AATATCAAATCAGTTGATGA+AGG - chr1.2:20448292-20448311 MS.gene31880:intron 25.0%
!!! TAATTGCTTTTAAGAGTCAA+TGG - chr1.2:20448492-20448511 MS.gene31880:intron 25.0%
!!! TGAACAAAAAATATTTTGGG+TGG - chr1.2:20448120-20448139 MS.gene31880:intron 25.0%
!!! TTCATCAACTGATTTGATAT+TGG + chr1.2:20448293-20448312 None:intergenic 25.0%
ACATTAACAATAGGGATTAC+AGG + chr1.2:20447997-20448016 None:intergenic 30.0%
AGAAATATGCGGAGAAATAT+TGG - chr1.2:20448053-20448072 MS.gene31880:CDS 30.0%
AGGATGTCATGAAAATATTG+TGG - chr1.2:20449650-20449669 MS.gene31880:CDS 30.0%
ATTCATGAAAGAATGCAATG+TGG - chr1.2:20449761-20449780 MS.gene31880:intron 30.0%
CTAAAAAAGAAACTGAATCC+TGG + chr1.2:20449311-20449330 None:intergenic 30.0%
GATGAAACATAACACATTCA+AGG - chr1.2:20449486-20449505 MS.gene31880:CDS 30.0%
GTTTATGCCTATTGTATAGA+AGG - chr1.2:20449454-20449473 MS.gene31880:CDS 30.0%
TAATGGAACTGCAACAATAA+GGG - chr1.2:20448964-20448983 MS.gene31880:CDS 30.0%
TATTTCTCCGCATATTTCTT+AGG + chr1.2:20448052-20448071 None:intergenic 30.0%
TCTGAAAGCTTGTAAATCTA+AGG - chr1.2:20448539-20448558 MS.gene31880:intron 30.0%
TGATCTCTTGAAAAATCACT+TGG + chr1.2:20448932-20448951 None:intergenic 30.0%
TTAATGGAACTGCAACAATA+AGG - chr1.2:20448963-20448982 MS.gene31880:CDS 30.0%
TTATGTAATTAATCCTACCG+GGG + chr1.2:20449530-20449549 None:intergenic 30.0%
! ACATAACACATTCAAGGTTT+TGG - chr1.2:20449492-20449511 MS.gene31880:CDS 30.0%
! GTAAATTTGAGATGATTCGA+CGG - chr1.2:20449107-20449126 MS.gene31880:intron 30.0%
! TAAACCATGATTTGAAACAG+TGG - chr1.2:20448903-20448922 MS.gene31880:intron 30.0%
!! AACTATTATGAGAGTATTCG+TGG - chr1.2:20449711-20449730 MS.gene31880:intron 30.0%
!! CATTGGTGGATCATATTTTA+AGG - chr1.2:20448228-20448247 MS.gene31880:CDS 30.0%
!!! ATTTTTTGTTCAACACCGTT+TGG + chr1.2:20448112-20448131 None:intergenic 30.0%
AAAGAATGCAATGTGGAGAT+TGG - chr1.2:20449768-20449787 MS.gene31880:intron 35.0%
AAATGCCAAAGCAAGTTCAA+AGG - chr1.2:20448395-20448414 MS.gene31880:intron 35.0%
AACTGAATCCTGGATAACTT+AGG + chr1.2:20449301-20449320 None:intergenic 35.0%
AATGCCAAAGCAAGTTCAAA+GGG - chr1.2:20448396-20448415 MS.gene31880:intron 35.0%
ACTTTCTTTACCTTCTTCAG+TGG + chr1.2:20448326-20448345 None:intergenic 35.0%
AGAAGGTAAAGAAAGTGATG+AGG - chr1.2:20448330-20448349 MS.gene31880:intron 35.0%
AGTTAGTAACAAAGTGAGCA+TGG - chr1.2:20448722-20448741 MS.gene31880:CDS 35.0%
ATCAGGACCTTCTATACAAT+AGG + chr1.2:20449464-20449483 None:intergenic 35.0%
ATGACACAATCTTACGTCAA+TGG - chr1.2:20448816-20448835 MS.gene31880:intron 35.0%
CAACACCGTTTGGAAATTTA+AGG + chr1.2:20448102-20448121 None:intergenic 35.0%
CCAAAGGAGTTTATGAAAAG+AGG - chr1.2:20449630-20449649 MS.gene31880:CDS 35.0%
CTGAATTTCTTTGTTGCAGA+GGG - chr1.2:20448024-20448043 MS.gene31880:CDS 35.0%
GAAAATTCTCAGGTGAGTTT+AGG - chr1.2:20448434-20448453 MS.gene31880:intron 35.0%
GTAACCACTGTTTCAAATCA+TGG + chr1.2:20448910-20448929 None:intergenic 35.0%
GTGTTATGTTTCATCACATC+AGG + chr1.2:20449481-20449500 None:intergenic 35.0%
TAAAAATGGGGAGAAAGTCA+TGG - chr1.2:20449676-20449695 MS.gene31880:CDS 35.0%
TATGCGGAGAAATATTGGAA+AGG - chr1.2:20448058-20448077 MS.gene31880:CDS 35.0%
TCTGAATTTCTTTGTTGCAG+AGG - chr1.2:20448023-20448042 MS.gene31880:CDS 35.0%
TGGAGAGTAATGGTGATATT+TGG - chr1.2:20448140-20448159 MS.gene31880:intron 35.0%
TGGTGGTTGGAAAATATTCA+GGG - chr1.2:20449054-20449073 MS.gene31880:intron 35.0%
TTGGAGATACTTGTCTCTTT+AGG - chr1.2:20449787-20449806 MS.gene31880:intron 35.0%
! AAAGAAAGATCTTGTTTGGG+TGG - chr1.2:20449034-20449053 MS.gene31880:intron 35.0%
! CCTCTTTTCATAAACTCCTT+TGG + chr1.2:20449633-20449652 None:intergenic 35.0%
!! ATATTTTGGGTGGAGAGTAA+TGG - chr1.2:20448130-20448149 MS.gene31880:intron 35.0%
!! CAATAAGGGTTGGTAATGAA+AGG - chr1.2:20448978-20448997 MS.gene31880:CDS 35.0%
!! CAATTTGCTGTGCTTCTTTA+AGG - chr1.2:20449844-20449863 MS.gene31880:CDS 35.0%
!! GAGGTTAGTTTGAGGTATTA+TGG - chr1.2:20449007-20449026 MS.gene31880:CDS 35.0%
!! TTACGTCAATGGCTATTTCT+TGG - chr1.2:20448827-20448846 MS.gene31880:intron 35.0%
AAGGGCAAGAGAAAATTCTC+AGG - chr1.2:20448424-20448443 MS.gene31880:intron 40.0%
ATTGTCACAATTACTCGTGC+CGG - chr1.2:20449145-20449164 MS.gene31880:intron 40.0%
CAAGTTCAAAGGGCAAGAAA+GGG - chr1.2:20448406-20448425 MS.gene31880:intron 40.0%
GAAGCCTAGAAAATACCCAA+TGG - chr1.2:20448749-20448768 MS.gene31880:CDS 40.0%
GAGAAAGTCATGGTTCGTAA+AGG - chr1.2:20449686-20449705 MS.gene31880:CDS 40.0%
GAGGGTTCCTAAGAAATATG+CGG - chr1.2:20448042-20448061 MS.gene31880:CDS 40.0%
GCAATCCCAAAGAAACTACT+AGG - chr1.2:20449175-20449194 MS.gene31880:intron 40.0%
GTATTTGCAGACTGTACCAA+AGG - chr1.2:20449614-20449633 MS.gene31880:CDS 40.0%
GTGGTGGTTGGAAAATATTC+AGG - chr1.2:20449053-20449072 MS.gene31880:intron 40.0%
GTTAGTAGCCTAAGTTATCC+AGG - chr1.2:20449290-20449309 MS.gene31880:intron 40.0%
!! TGTGCCATTGGGTATTTTCT+AGG + chr1.2:20448756-20448775 None:intergenic 40.0%
ACAGCTTCAGATTGTGCCAT+TGG + chr1.2:20448768-20448787 None:intergenic 45.0%
AGTATTCGTGGCTGTAGGTT+CGG - chr1.2:20449723-20449742 MS.gene31880:intron 45.0%
CTCATCACTCTCTTCTTCAG+TGG + chr1.2:20448359-20448378 None:intergenic 45.0%
GAGTGATGAGAGTTCAGATG+AGG - chr1.2:20448369-20448388 MS.gene31880:intron 45.0%
GCAAGTTCAAAGGGCAAGAA+AGG - chr1.2:20448405-20448424 MS.gene31880:intron 45.0%
GGAACTGCAACAATAAGGGT+TGG - chr1.2:20448968-20448987 MS.gene31880:CDS 45.0%
! CAGCTTCAGATTGTGCCATT+GGG + chr1.2:20448767-20448786 None:intergenic 45.0%
! CTTGCCCTTTGAACTTGCTT+TGG + chr1.2:20448403-20448422 None:intergenic 45.0%
! GAAAGATCTTGTTTGGGTGG+TGG - chr1.2:20449037-20449056 MS.gene31880:intron 45.0%
! GCTGTAGGTTCGGTAAAGAT+TGG - chr1.2:20449733-20449752 MS.gene31880:intron 45.0%
! TGGTAATGAAAGGAGTGTGG+AGG - chr1.2:20448988-20449007 MS.gene31880:CDS 45.0%
!! ATGAGAGTATTCGTGGCTGT+AGG - chr1.2:20449718-20449737 MS.gene31880:intron 45.0%
!! CTTTGGGATTGCTTCGTTTC+CGG + chr1.2:20449167-20449186 None:intergenic 45.0%
!! GGTTGGTAATGAAAGGAGTG+TGG - chr1.2:20448985-20449004 MS.gene31880:CDS 45.0%
!! TAATATATGATAAAAAAAAT+TGG - chr1.2:20448660-20448679 MS.gene31880:CDS 5.0%
!!! TTATAATTTTTTTATGAAAA+AGG - chr1.2:20449238-20449257 MS.gene31880:intron 5.0%
! GATCTTGTTTGGGTGGTGGT+TGG - chr1.2:20449041-20449060 MS.gene31880:intron 50.0%
!! GGAGTGTGGAGGTTAGTTTG+AGG - chr1.2:20448999-20449018 MS.gene31880:CDS 50.0%
! GGTGCTGAAGCCACTGAAGA+AGG - chr1.2:20448313-20448332 MS.gene31880:intron 55.0%
! TTTGGTGAAGAGCACAGCCC+CGG - chr1.2:20449510-20449529 MS.gene31880:CDS 55.0%
! GTGAAGAGCACAGCCCCGGT+AGG - chr1.2:20449514-20449533 MS.gene31880:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 20447884 20449872 20447884 ID=MS.gene31880
chr1.2 mRNA 20447884 20449872 20447884 ID=MS.gene31880.t1;Parent=MS.gene31880
chr1.2 exon 20449816 20449872 20449816 ID=MS.gene31880.t1.exon1;Parent=MS.gene31880.t1
chr1.2 CDS 20449816 20449872 20449816 ID=cds.MS.gene31880.t1;Parent=MS.gene31880.t1
chr1.2 exon 20449311 20449713 20449311 ID=MS.gene31880.t1.exon2;Parent=MS.gene31880.t1
chr1.2 CDS 20449311 20449713 20449311 ID=cds.MS.gene31880.t1;Parent=MS.gene31880.t1
chr1.2 exon 20448908 20449032 20448908 ID=MS.gene31880.t1.exon3;Parent=MS.gene31880.t1
chr1.2 CDS 20448908 20449032 20448908 ID=cds.MS.gene31880.t1;Parent=MS.gene31880.t1
chr1.2 exon 20448560 20448833 20448560 ID=MS.gene31880.t1.exon4;Parent=MS.gene31880.t1
chr1.2 CDS 20448560 20448833 20448560 ID=cds.MS.gene31880.t1;Parent=MS.gene31880.t1
chr1.2 exon 20448225 20448283 20448225 ID=MS.gene31880.t1.exon5;Parent=MS.gene31880.t1
chr1.2 CDS 20448225 20448283 20448225 ID=cds.MS.gene31880.t1;Parent=MS.gene31880.t1
chr1.2 exon 20447884 20448132 20447884 ID=MS.gene31880.t1.exon6;Parent=MS.gene31880.t1
chr1.2 CDS 20447884 20448132 20447884 ID=cds.MS.gene31880.t1;Parent=MS.gene31880.t1
Gene Sequence

>MS.gene31880

ATGTCATTTCAACATGTTCCAGATTTTCATAGAATAATATTGCAAGATAAGAAACTTGTAAGTCTATTACAAATAATTATATTGCATATTTTATATTATGTTTCATTTATCCTGTAATCCCTATTGTTAATGTATGATTTCTGAATTTCTTTGTTGCAGAGGGTTCCTAAGAAATATGCGGAGAAATATTGGAAAGGAATATCAAACCCAATATTCCTTAAATTTCCAAACGGTGTTGAACAAAAAATATTTTGGGTGGAGAGTAATGGTGATATTTGGTTTCAAAAAAATTGGGAAAGTTTTGCAAAGTCTTTCAAATATGGATATCTCTTAACTTTCAAATTCATTGGTGGATCATATTTTAAGGTTAAGATATTTGGTGCCAATACTTTAGAAATAAATTATGCCAATATCAAATCAGTTGATGAAGGTGCTGAAGCCACTGAAGAAGGTAAAGAAAGTGATGAGGAAGCCACTGAAGAAGAGAGTGATGAGAGTTCAGATGAGGTTGAAATGCCAAAGCAAGTTCAAAGGGCAAGAAAGGGCAAGAGAAAATTCTCAGGTGAGTTTAGGCTTGTCTAAATAAAAAACATTAGTTTTTATAGAAATAATTGCTTTTAAGAGTCAATGGTTTGTACTTTGTTGTAATTTTTTGTCTGAAAGCTTGTAAATCTAAGGAAAAAAAAGTGTCTTGAAGTGCATAATTGAGAAGCATTGTTAGATACTTTTTTCTATAAAAATATGTGACTTTTTTGGAAGGAAAAATATGTGATTTATAATATATGATAAAAAAAATTGGTTTTCTTAAAATTGTTTAAAAATAATCTCTAAACTTTACAGTTAGTAACAAAGTGAGCATGGTGAAGAAGCCTAGAAAATACCCAATGGCACAATCTGAAGCTGTTAATGAGAATCCCTCTTTTGAAGTTATAATGACACAATCTTACGTCAATGGCTATTTCTTGGTAAGTTTGCTATACAAAGTATCTATTAATTTAAGCTTTAATTAATATATCTAATAAACCATGATTTGAAACAGTGGTTACCAAGTGATTTTTCAAGAGATCACTTGAAAAAATTTAATGGAACTGCAACAATAAGGGTTGGTAATGAAAGGAGTGTGGAGGTTAGTTTGAGGTATTATGGTTATAAAGAAAGATCTTGTTTGGGTGGTGGTTGGAAAATATTCAGGGAAAAATATAATTTTCAAGTTGGCGATGTTTGTAAATTTGAGATGATTCGACGGAGACCTTTTTCATTCATTGTCACAATTACTCGTGCCGGAAACGAAGCAATCCCAAAGAAACTACTAGGTTTTAATTCTTTCTTTCTCTTTTATTTGCTTTTTTGTATGTTATAATTTTTTTATGAAAAAGGTTATAAGAAAGGGGTCTCTTTTTTTAATAGTTAGTAGCCTAAGTTATCCAGGATTCAGTTTCTTTTTTAGTTTAAACCTAACTGTATATTGTATGTTTAAGTTCATACTTGAAATTTTTTAGCTCAAAATAAATTCAAATATCTCTAAATTTTTTGGGTATTATGAAAATTAGATTAGATGATATCATTTTGTGTTTATGCCTATTGTATAGAAGGTCCTGATGTGATGAAACATAACACATTCAAGGTTTTGGTGAAGAGCACAGCCCCGGTAGGATTAATTACATAAAATATAGTTACATATATAGATAGAGATGTTAGAACTACAAAATAAATAAATGATATTTTTGTTTGTATTTGCAGACTGTACCAAAGGAGTTTATGAAAAGAGGATGTCATGAAAATATTGTGGAGTTAAAAATGGGGAGAAAGTCATGGTTCGTAAAGGTGAACTATTATGAGAGTATTCGTGGCTGTAGGTTCGGTAAAGATTGGATAAAATTCATGAAAGAATGCAATGTGGAGATTGGAGATACTTGTCTCTTTAGGTTAATTGATGAAAGGAAATTTGTGTTTGATGTTTCAATTTGCTGTGCTTCTTTAAGGCACTAA
Protein sequence

>MS.gene31880.t1

MSFQHVPDFHRIILQDKKLRVPKKYAEKYWKGISNPIFLKFPNGVEQKIFWVESNGDIWFQKNWESFAKSFKYGYLLTFKFIGGSYFKVKIFGANTLEINYANIKSVDEGAEATEEGKESDEEATEEESDESSDEVEMPKQVQRARKGKRKFSVSNKVSMVKKPRKYPMAQSEAVNENPSFEVIMTQSYVNGYFLWLPSDFSRDHLKKFNGTATIRVGNERSVEVSLRYYGYKERSCLGGGWKIFREKYNFQVGDVCKFEMIRRRPFSFIVTITRAGNEAIPKKLLEGPDVMKHNTFKVLVKSTAPTVPKEFMKRGCHENIVELKMGRKSWFVKVNYYESIRGCRFGKDWIKFMKECNVEIGDTCLFRLIDERKFVFDVSICCASLRH