Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068150.t1 | XP_024631285.1 | 79.5 | 380 | 71 | 3 | 34 | 406 | 17 | 396 | 1.10E-150 | 543.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068150.t1 | Q8L3W1 | 34.5 | 84 | 53 | 1 | 35 | 116 | 21 | 104 | 2.2e-06 | 55.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068150.t1 | A0A396JPU6 | 79.5 | 380 | 71 | 3 | 34 | 406 | 17 | 396 | 7.8e-151 | 543.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene068150.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068150.t1 | MTR_1g035570 | 80.412 | 388 | 69 | 3 | 26 | 406 | 11 | 398 | 0.0 | 611 |
| MS.gene068150.t1 | MTR_1g035490 | 67.812 | 320 | 56 | 7 | 127 | 404 | 16 | 330 | 6.55e-130 | 377 |
| MS.gene068150.t1 | MTR_1g035620 | 45.636 | 401 | 168 | 11 | 35 | 401 | 24 | 408 | 2.03e-100 | 305 |
| MS.gene068150.t1 | MTR_1g035640 | 42.072 | 473 | 161 | 13 | 26 | 403 | 11 | 465 | 2.02e-98 | 301 |
| MS.gene068150.t1 | MTR_1g050845 | 44.780 | 364 | 149 | 12 | 35 | 369 | 24 | 364 | 2.25e-78 | 258 |
| MS.gene068150.t1 | MTR_6g061070 | 32.594 | 451 | 206 | 12 | 36 | 402 | 34 | 470 | 4.01e-64 | 213 |
| MS.gene068150.t1 | MTR_1g035650 | 43.455 | 191 | 88 | 3 | 35 | 216 | 24 | 203 | 8.77e-42 | 146 |
| MS.gene068150.t1 | MTR_7g050710 | 30.000 | 310 | 169 | 7 | 28 | 304 | 21 | 315 | 5.96e-31 | 121 |
| MS.gene068150.t1 | MTR_7g050560 | 30.657 | 274 | 173 | 6 | 36 | 300 | 29 | 294 | 8.99e-31 | 120 |
| MS.gene068150.t1 | MTR_5g044670 | 28.873 | 284 | 173 | 6 | 36 | 299 | 32 | 306 | 1.04e-29 | 117 |
| MS.gene068150.t1 | MTR_7g050590 | 30.928 | 291 | 167 | 8 | 36 | 300 | 2 | 284 | 1.41e-29 | 116 |
| MS.gene068150.t1 | MTR_1g108780 | 28.866 | 291 | 172 | 9 | 33 | 297 | 10 | 291 | 3.27e-29 | 118 |
| MS.gene068150.t1 | MTR_3g098790 | 31.295 | 278 | 167 | 7 | 36 | 296 | 29 | 299 | 2.76e-27 | 111 |
| MS.gene068150.t1 | MTR_1g035480 | 42.657 | 143 | 63 | 4 | 36 | 174 | 33 | 160 | 4.05e-27 | 107 |
| MS.gene068150.t1 | MTR_8g103940 | 27.055 | 292 | 173 | 9 | 35 | 298 | 54 | 333 | 4.70e-27 | 112 |
| MS.gene068150.t1 | MTR_1g035510 | 31.982 | 222 | 124 | 8 | 36 | 239 | 2 | 214 | 4.49e-26 | 105 |
| MS.gene068150.t1 | MTR_7g050720 | 30.508 | 295 | 166 | 12 | 36 | 296 | 26 | 315 | 1.30e-25 | 106 |
| MS.gene068150.t1 | MTR_3g061350 | 26.786 | 280 | 184 | 8 | 26 | 294 | 14 | 283 | 1.54e-25 | 105 |
| MS.gene068150.t1 | MTR_3g061310 | 27.931 | 290 | 169 | 9 | 26 | 294 | 14 | 284 | 3.31e-25 | 104 |
| MS.gene068150.t1 | MTR_7g050580 | 31.022 | 274 | 172 | 6 | 36 | 300 | 29 | 294 | 5.07e-25 | 104 |
| MS.gene068150.t1 | MTR_1g033740 | 38.849 | 139 | 76 | 3 | 36 | 174 | 38 | 167 | 2.82e-24 | 99.4 |
| MS.gene068150.t1 | MTR_3g061340 | 27.208 | 283 | 169 | 11 | 26 | 294 | 14 | 273 | 8.88e-23 | 97.4 |
| MS.gene068150.t1 | MTR_3g061320 | 26.871 | 294 | 161 | 12 | 26 | 294 | 14 | 278 | 3.72e-22 | 95.9 |
| MS.gene068150.t1 | MTR_1g035470 | 38.525 | 122 | 61 | 2 | 36 | 157 | 2 | 109 | 4.65e-22 | 91.7 |
| MS.gene068150.t1 | MTR_3g061370 | 26.599 | 297 | 163 | 12 | 26 | 294 | 11 | 280 | 7.30e-22 | 95.1 |
| MS.gene068150.t1 | MTR_1g035500 | 41.129 | 124 | 58 | 3 | 36 | 159 | 41 | 149 | 1.60e-21 | 91.7 |
| MS.gene068150.t1 | MTR_1g035460 | 24.671 | 304 | 178 | 7 | 36 | 301 | 2 | 292 | 5.88e-21 | 94.4 |
| MS.gene068150.t1 | MTR_1g035520 | 26.733 | 303 | 176 | 7 | 33 | 294 | 85 | 382 | 4.81e-20 | 91.3 |
| MS.gene068150.t1 | MTR_1g035520 | 40.426 | 94 | 52 | 2 | 313 | 402 | 290 | 383 | 1.83e-13 | 71.6 |
| MS.gene068150.t1 | MTR_4g119990 | 27.737 | 274 | 166 | 9 | 35 | 282 | 30 | 297 | 5.10e-20 | 91.3 |
| MS.gene068150.t1 | MTR_6g043890 | 25.287 | 261 | 179 | 6 | 35 | 280 | 30 | 289 | 7.97e-19 | 87.4 |
| MS.gene068150.t1 | MTR_3g061330 | 25.620 | 242 | 147 | 8 | 26 | 250 | 14 | 239 | 9.19e-18 | 82.8 |
| MS.gene068150.t1 | MTR_3g061290 | 31.746 | 126 | 81 | 3 | 26 | 146 | 14 | 139 | 2.02e-14 | 72.0 |
| MS.gene068150.t1 | MTR_5g070440 | 23.704 | 270 | 163 | 9 | 35 | 297 | 36 | 269 | 8.61e-12 | 65.5 |
| MS.gene068150.t1 | MTR_7g050640 | 40.000 | 95 | 53 | 2 | 28 | 118 | 21 | 115 | 1.72e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 79 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACACCGTTTGGAAATTTA+AGG | 0.151014 | 1.4:+37207416 | None:intergenic |
| CTTTCGGATTGGGTCGTTTC+CGG | 0.165945 | 1.4:+37206418 | None:intergenic |
| TTTGCAAAGCCTTTCAAATA+TGG | 0.200041 | 1.4:-37207331 | MS.gene068150:CDS |
| CAAGCTCAAAGGACAATAAA+AGG | 0.217300 | 1.4:-37207091 | MS.gene068150:CDS |
| AAATATTGTGGAGTTGAAAA+TGG | 0.256652 | 1.4:-37205920 | MS.gene068150:CDS |
| TGGAGAGAAATGGTGATATT+TGG | 0.267670 | 1.4:-37207375 | MS.gene068150:CDS |
| TATTTCTCCACATATATCTT+AGG | 0.281171 | 1.4:+37207466 | None:intergenic |
| TGATAGTGTTTCTCTATTGA+TGG | 0.295209 | 1.4:-37208590 | MS.gene068150:intron |
| GAAGCATACATTCAAGGTTT+TGG | 0.302239 | 1.4:-37206090 | MS.gene068150:CDS |
| TTTGGAAATTTAAGGAATAT+AGG | 0.302976 | 1.4:+37207424 | None:intergenic |
| TTACACCAATGGCTATTTCT+TGG | 0.306445 | 1.4:-37206758 | MS.gene068150:intron |
| TACCGAATTGCCGCTGAGTT+TGG | 0.308931 | 1.4:+37208723 | None:intergenic |
| GTGTTTGATGTTTCAATTGT+AGG | 0.309600 | 1.4:-37205751 | MS.gene068150:CDS |
| TTAAAGGGACTGCAACAATA+AGG | 0.310666 | 1.4:-37206619 | MS.gene068150:CDS |
| CTCTTAACTTTCAAATTCAT+TGG | 0.314459 | 1.4:-37207304 | MS.gene068150:CDS |
| AGATATATGTGGAGAAATAT+TGG | 0.326941 | 1.4:-37207462 | MS.gene068150:CDS |
| CTAGTAATTTCTTTCGGATT+GGG | 0.342779 | 1.4:+37206408 | None:intergenic |
| TTGGAAATTTAAGGAATATA+GGG | 0.346499 | 1.4:+37207425 | None:intergenic |
| GAGGTGGTTGGAAAATATTC+AGG | 0.364157 | 1.4:-37206529 | MS.gene068150:CDS |
| TAAAACCTAGTAATTTCTTT+CGG | 0.364235 | 1.4:+37206402 | None:intergenic |
| CCTAGTAATTTCTTTCGGAT+TGG | 0.373001 | 1.4:+37206407 | None:intergenic |
| CCAATCCGAAAGAAATTACT+AGG | 0.396990 | 1.4:-37206407 | MS.gene068150:intron |
| ATAGTTTATTTCTAAAGTAT+TGG | 0.406626 | 1.4:+37207249 | None:intergenic |
| TAAAGGGACTGCAACAATAA+GGG | 0.414381 | 1.4:-37206618 | MS.gene068150:CDS |
| TTTGATGAAGCATACATTCA+AGG | 0.419004 | 1.4:-37206096 | MS.gene068150:CDS |
| ACAGCTTCAGATTGTGCCAT+TGG | 0.421914 | 1.4:+37206820 | None:intergenic |
| GAAGTGAGTTTGAGGTATTA+TGG | 0.429201 | 1.4:-37206575 | MS.gene068150:CDS |
| AATATTGTGGAGTTGAAAAT+GGG | 0.451536 | 1.4:-37205919 | MS.gene068150:CDS |
| CAGCTTCAGATTGTGCCATT+GGG | 0.460205 | 1.4:+37206821 | None:intergenic |
| AAAGAATGCAATGTGGAGAT+TGG | 0.464528 | 1.4:-37205814 | MS.gene068150:CDS |
| CAAAGTGGCCATGGTGAAGA+AGG | 0.465563 | 1.4:-37206854 | MS.gene068150:CDS |
| GAGTTTGGCTGAACTGCAAT+CGG | 0.466893 | 1.4:+37208738 | None:intergenic |
| TGTTCTCTTGAAAACTCAAA+TGG | 0.468009 | 1.4:+37206653 | None:intergenic |
| TGTCATTATAACTTCAAAAG+AGG | 0.475259 | 1.4:+37206786 | None:intergenic |
| TTAACTTTCAAATTCATTGG+TGG | 0.475675 | 1.4:-37207301 | MS.gene068150:CDS |
| AGCCAAACTCAGCGGCAATT+CGG | 0.476178 | 1.4:-37208725 | MS.gene068150:intron |
| GGTGCTAAAGCCACTGAAGA+AGG | 0.489506 | 1.4:-37207202 | MS.gene068150:CDS |
| GGAGTGTGGAAGTGAGTTTG+AGG | 0.490380 | 1.4:-37206583 | MS.gene068150:CDS |
| ATGAGAGTATTCGTGGCTGC+AGG | 0.493889 | 1.4:-37205864 | MS.gene068150:CDS |
| CCAAAGGAGTTTATGAAAAG+AGG | 0.496159 | 1.4:-37205952 | MS.gene068150:CDS |
| GTCATTATAACTTCAAAAGA+GGG | 0.507540 | 1.4:+37206787 | None:intergenic |
| CGTGGCTGCAGGTTCAGTAA+AGG | 0.507598 | 1.4:-37205853 | MS.gene068150:CDS |
| CAATAAGGGTTGGTAAAGAA+AGG | 0.509993 | 1.4:-37206604 | MS.gene068150:CDS |
| AATTATTATGAGAGTATTCG+TGG | 0.512630 | 1.4:-37205871 | MS.gene068150:CDS |
| ACTTTCTTTACCTTCTTCAG+TGG | 0.514754 | 1.4:+37207192 | None:intergenic |
| AAGAGATATCCATATTTGAA+AGG | 0.520085 | 1.4:+37207322 | None:intergenic |
| ATTGTCACTATTACTCGTGC+CGG | 0.525079 | 1.4:-37206437 | MS.gene068150:CDS |
| AAGCTCAAAGGACAATAAAA+GGG | 0.530769 | 1.4:-37207090 | MS.gene068150:CDS |
| AGGATGTCATGAAAATATTG+TGG | 0.531604 | 1.4:-37205932 | MS.gene068150:CDS |
| ATAGTGACAATGAATGAAAA+CGG | 0.533216 | 1.4:+37206449 | None:intergenic |
| ATATTCCTTAAATTTCCAAA+CGG | 0.536219 | 1.4:-37207421 | MS.gene068150:CDS |
| GATCTTGTATGGGAGGTGGT+TGG | 0.551716 | 1.4:-37206541 | MS.gene068150:CDS |
| AAAGTATAATTTGCAAGTTG+AGG | 0.553539 | 1.4:-37206504 | MS.gene068150:CDS |
| AAAGGGAAGAGAAAATTCTC+AGG | 0.557828 | 1.4:-37207073 | MS.gene068150:intron |
| TGAAAATGGGGAGGAAGTCA+TGG | 0.563749 | 1.4:-37205906 | MS.gene068150:CDS |
| AAAAGATCTTGTATGGGAGG+TGG | 0.568049 | 1.4:-37206545 | MS.gene068150:CDS |
| TTTGGTGAAGAACACAGCCC+CGG | 0.573521 | 1.4:-37206072 | MS.gene068150:intron |
| AACGACACTGCCATGTCTGT+TGG | 0.574077 | 1.4:+37208764 | None:intergenic |
| GCTGCAGGTTCAGTAAAGGT+TGG | 0.575963 | 1.4:-37205849 | MS.gene068150:CDS |
| AGGTAGTAACAAAGTGGCCA+TGG | 0.582904 | 1.4:-37206863 | MS.gene068150:CDS |
| GCCATGTCTGTTGGATGAAG+AGG | 0.585286 | 1.4:+37208773 | None:intergenic |
| GAGGGTTCCTAAGATATATG+TGG | 0.586451 | 1.4:-37207473 | MS.gene068150:CDS |
| ACTTACCAAGAAATAGCCAT+TGG | 0.587587 | 1.4:+37206753 | None:intergenic |
| GTAAATTTGAGATGATTCAA+CGG | 0.588165 | 1.4:-37206475 | MS.gene068150:CDS |
| GGGACTGCAACAATAAGGGT+TGG | 0.589089 | 1.4:-37206614 | MS.gene068150:CDS |
| GTATTTGCAGAGTGCACCAA+AGG | 0.590998 | 1.4:-37205968 | MS.gene068150:intron |
| GGTTGGTAAAGAAAGGAGTG+TGG | 0.602290 | 1.4:-37206597 | MS.gene068150:CDS |
| AGGTGGTTGGAAAATATTCA+GGG | 0.606836 | 1.4:-37206528 | MS.gene068150:CDS |
| ATGACACAATCTTACACCAA+TGG | 0.609025 | 1.4:-37206769 | MS.gene068150:CDS |
| TCCTCTTCATCCAACAGACA+TGG | 0.616110 | 1.4:-37208774 | MS.gene068150:CDS |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1.4:-37207457 | MS.gene068150:CDS |
| AAATGTCAAAGCAAGCTCAA+AGG | 0.625671 | 1.4:-37207102 | MS.gene068150:CDS |
| AAGTGATGAAGAGAGTGATG+AGG | 0.629681 | 1.4:-37207128 | MS.gene068150:CDS |
| TTGTGGAGTTGAAAATGGGG+AGG | 0.632079 | 1.4:-37205915 | MS.gene068150:CDS |
| CTTTACAGGTAGTAACAAAG+TGG | 0.648804 | 1.4:-37206869 | MS.gene068150:intron |
| TGCAGTTCAGCCAAACTCAG+CGG | 0.681334 | 1.4:-37208733 | MS.gene068150:CDS |
| GAAGGCTAGAAAATACCCAA+TGG | 0.687317 | 1.4:-37206836 | MS.gene068150:CDS |
| ATATTGTGGAGTTGAAAATG+GGG | 0.692849 | 1.4:-37205918 | MS.gene068150:CDS |
| ATTCATGAAAGAATGCAATG+TGG | 0.699756 | 1.4:-37205821 | MS.gene068150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAACATATAATATATAGTT+AGG | + | chr1.4:37208278-37208297 | None:intergenic | 10.0% |
| !!! | ATAAAAATATGTGATTTTTT+TGG | - | chr1.4:37207547-37207566 | MS.gene068150:intron | 10.0% |
| !!! | TGTATGTTATAATTTTTTTA+TGG | - | chr1.4:37208168-37208187 | MS.gene068150:intron | 10.0% |
| !!! | AATGTTTATATTTGTGATTT+TGG | - | chr1.4:37206244-37206263 | MS.gene068150:intron | 15.0% |
| !!! | ATAGTTTATTTCTAAAGTAT+TGG | + | chr1.4:37207272-37207291 | None:intergenic | 15.0% |
| !!! | ATTTTCTATCTAATATTTTC+TGG | + | chr1.4:37206631-37206650 | None:intergenic | 15.0% |
| !!! | TATTTTAAGGTTAAGATATA+TGG | - | chr1.4:37207244-37207263 | MS.gene068150:CDS | 15.0% |
| !!! | TCAAATAACTCTAAAATTTT+TGG | - | chr1.4:37208332-37208351 | MS.gene068150:intron | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | - | chr1.4:37207120-37207139 | MS.gene068150:CDS | 15.0% |
| !!! | TTATAATTTTTTTATGGACA+AGG | - | chr1.4:37208174-37208193 | MS.gene068150:intron | 15.0% |
| !! | AAATAATCTCTAAACTTTAC+AGG | - | chr1.4:37207635-37207654 | MS.gene068150:intron | 20.0% |
| !! | AACAAAAAAAGATCTTGTAT+GGG | - | chr1.4:37207967-37207986 | MS.gene068150:intron | 20.0% |
| !! | AATTCAAAAACTGAAAGAAT+AGG | - | chr1.4:37206002-37206021 | MS.gene068150:intron | 20.0% |
| !! | ATATAAAAATGGCAGATTAA+GGG | - | chr1.4:37206439-37206458 | MS.gene068150:CDS | 20.0% |
| !! | ATATTCCTTAAATTTCCAAA+CGG | - | chr1.4:37207097-37207116 | MS.gene068150:CDS | 20.0% |
| !! | TAAAACCTAGTAATTTCTTT+CGG | + | chr1.4:37208119-37208138 | None:intergenic | 20.0% |
| !! | TAACAAAAAAAGATCTTGTA+TGG | - | chr1.4:37207966-37207985 | MS.gene068150:intron | 20.0% |
| !! | TATATAAAAATGGCAGATTA+AGG | - | chr1.4:37206438-37206457 | MS.gene068150:CDS | 20.0% |
| !! | TGTATTGTAATTCTTCAATT+TGG | - | chr1.4:37205852-37205871 | MS.gene068150:CDS | 20.0% |
| !! | TTGGAAATTTAAGGAATATA+GGG | + | chr1.4:37207096-37207115 | None:intergenic | 20.0% |
| !! | TTTGGAAATTTAAGGAATAT+AGG | + | chr1.4:37207097-37207116 | None:intergenic | 20.0% |
| !!! | AAATATGTGATTTTTTTGGA+AGG | - | chr1.4:37207551-37207570 | MS.gene068150:intron | 20.0% |
| !!! | AACACTTGAAAGATTTTAAA+GGG | - | chr1.4:37207884-37207903 | MS.gene068150:intron | 20.0% |
| !!! | AATATCAAATCAGTTTTTGA+AGG | - | chr1.4:37207295-37207314 | MS.gene068150:CDS | 20.0% |
| !!! | ATATTTGGTTTCAAAAAAAC+TGG | - | chr1.4:37207158-37207177 | MS.gene068150:CDS | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | - | chr1.4:37207119-37207138 | MS.gene068150:CDS | 20.0% |
| !!! | TAAAGACATTTTTTGTAGTA+TGG | + | chr1.4:37206710-37206729 | None:intergenic | 20.0% |
| !!! | TAATCTGCCATTTTTATATA+AGG | + | chr1.4:37206438-37206457 | None:intergenic | 20.0% |
| !!! | TATTTGGTTTCAAAAAAACT+GGG | - | chr1.4:37207159-37207178 | MS.gene068150:CDS | 20.0% |
| !!! | TTCAAAAACTGATTTGATAT+TGG | + | chr1.4:37207296-37207315 | None:intergenic | 20.0% |
| !!! | TTTTATGTAATTAATCCTAC+CGG | + | chr1.4:37208468-37208487 | None:intergenic | 20.0% |
| ! | AAATATTGTGGAGTTGAAAA+TGG | - | chr1.4:37208598-37208617 | MS.gene068150:intron | 25.0% |
| ! | AAGAGATATCCATATTTGAA+AGG | + | chr1.4:37207199-37207218 | None:intergenic | 25.0% |
| ! | AAGATTATCCTATGAAAATC+TGG | + | chr1.4:37206891-37206910 | None:intergenic | 25.0% |
| ! | AATATTGTGGAGTTGAAAAT+GGG | - | chr1.4:37208599-37208618 | MS.gene068150:intron | 25.0% |
| ! | AGATATATGTGGAGAAATAT+TGG | - | chr1.4:37207056-37207075 | MS.gene068150:intron | 25.0% |
| ! | ATAGTGACAATGAATGAAAA+CGG | + | chr1.4:37208072-37208091 | None:intergenic | 25.0% |
| ! | ATATCTACTAAACCATGATT+TGG | - | chr1.4:37207831-37207850 | MS.gene068150:intron | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | - | chr1.4:37207214-37207233 | MS.gene068150:CDS | 25.0% |
| ! | GTCATTATAACTTCAAAAGA+GGG | + | chr1.4:37207734-37207753 | None:intergenic | 25.0% |
| ! | GTTCAATGGATATTATAGTT+AGG | - | chr1.4:37206024-37206043 | MS.gene068150:intron | 25.0% |
| ! | TAAAAAAAGAAACTGAATCC+TGG | + | chr1.4:37208247-37208266 | None:intergenic | 25.0% |
| ! | TATTTCTCCACATATATCTT+AGG | + | chr1.4:37207055-37207074 | None:intergenic | 25.0% |
| ! | TGTCATTATAACTTCAAAAG+AGG | + | chr1.4:37207735-37207754 | None:intergenic | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | - | chr1.4:37207217-37207236 | MS.gene068150:CDS | 25.0% |
| ! | TTGGCTATATTAGATTTACA+AGG | + | chr1.4:37206525-37206544 | None:intergenic | 25.0% |
| ! | TTGTGATGATATACACAAAT+AGG | - | chr1.4:37206334-37206353 | MS.gene068150:intron | 25.0% |
| ! | TTTATGTAATTAATCCTACC+GGG | + | chr1.4:37208467-37208486 | None:intergenic | 25.0% |
| !! | AAAGTATAATTTGCAAGTTG+AGG | - | chr1.4:37208014-37208033 | MS.gene068150:intron | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+AGG | - | chr1.4:37207883-37207902 | MS.gene068150:intron | 25.0% |
| !! | GTAAATTTGAGATGATTCAA+CGG | - | chr1.4:37208043-37208062 | MS.gene068150:intron | 25.0% |
| !!! | AATTATTATGAGAGTATTCG+TGG | - | chr1.4:37208647-37208666 | MS.gene068150:intron | 25.0% |
| !!! | ACTGTTTTTGAACTGATTTT+TGG | - | chr1.4:37205885-37205904 | MS.gene068150:CDS | 25.0% |
| !!! | CTGTTTTTGAACTGATTTTT+GGG | - | chr1.4:37205886-37205905 | MS.gene068150:CDS | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | - | chr1.4:37207123-37207142 | MS.gene068150:CDS | 25.0% |
| AAAAAAAGATCTTGTATGGG+AGG | - | chr1.4:37207970-37207989 | MS.gene068150:intron | 30.0% | |
| AACTGAAAGAATAGGTTCAA+TGG | - | chr1.4:37206010-37206029 | MS.gene068150:intron | 30.0% | |
| AAGCTCAAAGGACAATAAAA+GGG | - | chr1.4:37207428-37207447 | MS.gene068150:CDS | 30.0% | |
| AGGATGTCATGAAAATATTG+TGG | - | chr1.4:37208586-37208605 | MS.gene068150:CDS | 30.0% | |
| AGTTGTGATGATTCACAAAT+AGG | - | chr1.4:37206160-37206179 | MS.gene068150:intron | 30.0% | |
| AGTTTAGGCTTGTAAATCTA+AGG | - | chr1.4:37207470-37207489 | MS.gene068150:CDS | 30.0% | |
| ATATTGTGGAGTTGAAAATG+GGG | - | chr1.4:37208600-37208619 | MS.gene068150:intron | 30.0% | |
| ATGGACAAGGTTATAAGAAA+GGG | - | chr1.4:37208187-37208206 | MS.gene068150:intron | 30.0% | |
| ATTCATGAAAGAATGCAATG+TGG | - | chr1.4:37208697-37208716 | MS.gene068150:intron | 30.0% | |
| CTAGTAATTTCTTTCGGATT+GGG | + | chr1.4:37208113-37208132 | None:intergenic | 30.0% | |
| CTGAATTTCTTTATTGCAGA+GGG | - | chr1.4:37207027-37207046 | MS.gene068150:intron | 30.0% | |
| GACAGCACCTTATATAAAAA+TGG | - | chr1.4:37206428-37206447 | MS.gene068150:CDS | 30.0% | |
| GTGTTTGATGTTTCAATTGT+AGG | - | chr1.4:37208767-37208786 | MS.gene068150:CDS | 30.0% | |
| TAGTACAATTCAGTGAAAGT+TGG | + | chr1.4:37206544-37206563 | None:intergenic | 30.0% | |
| TATGGACAAGGTTATAAGAA+AGG | - | chr1.4:37208186-37208205 | MS.gene068150:intron | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | - | chr1.4:37207061-37207080 | MS.gene068150:intron | 30.0% | |
| TCTGAATTTCTTTATTGCAG+AGG | - | chr1.4:37207026-37207045 | MS.gene068150:intron | 30.0% | |
| TGTTCTCTTGAAAACTCAAA+TGG | + | chr1.4:37207868-37207887 | None:intergenic | 30.0% | |
| TTATGTAATTAATCCTACCG+GGG | + | chr1.4:37208466-37208485 | None:intergenic | 30.0% | |
| TTTGATGAAGCATACATTCA+AGG | - | chr1.4:37208422-37208441 | MS.gene068150:intron | 30.0% | |
| TTTGCAAAGCCTTTCAAATA+TGG | - | chr1.4:37207187-37207206 | MS.gene068150:CDS | 30.0% | |
| ! | AACATGTTCCAGATTTTCAT+AGG | - | chr1.4:37206880-37206899 | MS.gene068150:intron | 30.0% |
| ! | ACTTTCTTCATCTTCTTTTG+TGG | + | chr1.4:37207374-37207393 | None:intergenic | 30.0% |
| ! | CTTTCTTCATCTTCTTTTGT+GGG | + | chr1.4:37207373-37207392 | None:intergenic | 30.0% |
| ! | TGATAGTGTTTCTCTATTGA+TGG | - | chr1.4:37205928-37205947 | MS.gene068150:CDS | 30.0% |
| !! | CATTGGTGGATCATATTTTA+AGG | - | chr1.4:37207231-37207250 | MS.gene068150:CDS | 30.0% |
| !! | TTCTAGCTTACATTGTAAGA+TGG | - | chr1.4:37206401-37206420 | MS.gene068150:intron | 30.0% |
| !!! | ATTTTCTGGTGTTACTACTT+TGG | + | chr1.4:37206617-37206636 | None:intergenic | 30.0% |
| !!! | ATTTTTTGTTCAACACCGTT+TGG | + | chr1.4:37207115-37207134 | None:intergenic | 30.0% |
| !!! | CTTTTAATTTGCCACAAAAG+TGG | + | chr1.4:37206371-37206390 | None:intergenic | 30.0% |
| !!! | GACATTTTTTGTAGTATGGT+AGG | + | chr1.4:37206706-37206725 | None:intergenic | 30.0% |
| !!! | TTTTTATATAAGGTGCTGTC+TGG | + | chr1.4:37206428-37206447 | None:intergenic | 30.0% |
| AAAGAATGCAATGTGGAGAT+TGG | - | chr1.4:37208704-37208723 | MS.gene068150:intron | 35.0% | |
| AAAGGGAAGAGAAAATTCTC+AGG | - | chr1.4:37207445-37207464 | MS.gene068150:CDS | 35.0% | |
| AAATGTCAAAGCAAGCTCAA+AGG | - | chr1.4:37207416-37207435 | MS.gene068150:CDS | 35.0% | |
| AACTGAATCCTGGATAACTT+AGG | + | chr1.4:37208237-37208256 | None:intergenic | 35.0% | |
| AATGGACAGTAATGAAGTCT+TGG | - | chr1.4:37206677-37206696 | MS.gene068150:intron | 35.0% | |
| ACTTACCAAGAAATAGCCAT+TGG | + | chr1.4:37207768-37207787 | None:intergenic | 35.0% | |
| ACTTCATTACTGTCCATTAC+AGG | + | chr1.4:37206675-37206694 | None:intergenic | 35.0% | |
| ACTTTCTTTACCTTCTTCAG+TGG | + | chr1.4:37207329-37207348 | None:intergenic | 35.0% | |
| AGGTGGTTGGAAAATATTCA+GGG | - | chr1.4:37207990-37208009 | MS.gene068150:intron | 35.0% | |
| ATGACACAATCTTACACCAA+TGG | - | chr1.4:37207749-37207768 | MS.gene068150:intron | 35.0% | |
| CAACACCGTTTGGAAATTTA+AGG | + | chr1.4:37207105-37207124 | None:intergenic | 35.0% | |
| CAAGCTCAAAGGACAATAAA+AGG | - | chr1.4:37207427-37207446 | MS.gene068150:CDS | 35.0% | |
| CCAAAGGAGTTTATGAAAAG+AGG | - | chr1.4:37208566-37208585 | MS.gene068150:intron | 35.0% | |
| CCAATCCGAAAGAAATTACT+AGG | - | chr1.4:37208111-37208130 | MS.gene068150:intron | 35.0% | |
| CCTAGTAATTTCTTTCGGAT+TGG | + | chr1.4:37208114-37208133 | None:intergenic | 35.0% | |
| CTTTACAGGTAGTAACAAAG+TGG | - | chr1.4:37207649-37207668 | MS.gene068150:intron | 35.0% | |
| GAAAATTCTCAGGTGAGTTT+AGG | - | chr1.4:37207455-37207474 | MS.gene068150:CDS | 35.0% | |
| GCATACACTCAAAAACACAT+TGG | + | chr1.4:37206499-37206518 | None:intergenic | 35.0% | |
| TAAAGGGACTGCAACAATAA+GGG | - | chr1.4:37207900-37207919 | MS.gene068150:intron | 35.0% | |
| TCTCTACAAATGACCTGTAA+TGG | - | chr1.4:37206659-37206678 | MS.gene068150:CDS | 35.0% | |
| TGGACAAGGTTATAAGAAAG+GGG | - | chr1.4:37208188-37208207 | MS.gene068150:intron | 35.0% | |
| TGGAGAGAAATGGTGATATT+TGG | - | chr1.4:37207143-37207162 | MS.gene068150:CDS | 35.0% | |
| TTAAAGGGACTGCAACAATA+AGG | - | chr1.4:37207899-37207918 | MS.gene068150:intron | 35.0% | |
| TTATGCCTGTATTGTACAGA+AGG | - | chr1.4:37208393-37208412 | MS.gene068150:intron | 35.0% | |
| TTTCACACTTTACACTTCAC+AGG | - | chr1.4:37206741-37206760 | MS.gene068150:intron | 35.0% | |
| ! | CCTCTTTTCATAAACTCCTT+TGG | + | chr1.4:37208569-37208588 | None:intergenic | 35.0% |
| ! | GAAGCATACATTCAAGGTTT+TGG | - | chr1.4:37208428-37208447 | MS.gene068150:intron | 35.0% |
| ! | GAAGTGAGTTTGAGGTATTA+TGG | - | chr1.4:37207943-37207962 | MS.gene068150:intron | 35.0% |
| ! | TAAACCATGATTTGGAACAG+TGG | - | chr1.4:37207839-37207858 | MS.gene068150:intron | 35.0% |
| !! | ACAAAGCAAATCCACTTTTG+TGG | - | chr1.4:37206357-37206376 | MS.gene068150:intron | 35.0% |
| !! | ATATTTTGGGTGGAGAGAAA+TGG | - | chr1.4:37207133-37207152 | MS.gene068150:CDS | 35.0% |
| !! | CAATAAGGGTTGGTAAAGAA+AGG | - | chr1.4:37207914-37207933 | MS.gene068150:intron | 35.0% |
| !! | TTACACCAATGGCTATTTCT+TGG | - | chr1.4:37207760-37207779 | MS.gene068150:intron | 35.0% |
| AAAAGATCTTGTATGGGAGG+TGG | - | chr1.4:37207973-37207992 | MS.gene068150:intron | 40.0% | |
| AAGTGATGAAGAGAGTGATG+AGG | - | chr1.4:37207390-37207409 | MS.gene068150:CDS | 40.0% | |
| ATGGCAGATTAAGGGATCAA+AGG | - | chr1.4:37206447-37206466 | MS.gene068150:CDS | 40.0% | |
| ATTGTCACTATTACTCGTGC+CGG | - | chr1.4:37208081-37208100 | MS.gene068150:intron | 40.0% | |
| GAAGGCTAGAAAATACCCAA+TGG | - | chr1.4:37207682-37207701 | MS.gene068150:intron | 40.0% | |
| GAGGGTTCCTAAGATATATG+TGG | - | chr1.4:37207045-37207064 | MS.gene068150:intron | 40.0% | |
| GAGGTGGTTGGAAAATATTC+AGG | - | chr1.4:37207989-37208008 | MS.gene068150:intron | 40.0% | |
| GATGCTAGTGAGTGAGTATT+GGG | + | chr1.4:37206842-37206861 | None:intergenic | 40.0% | |
| GTAACCACTGTTCCAAATCA+TGG | + | chr1.4:37207846-37207865 | None:intergenic | 40.0% | |
| GTTAGTAGCCTAAGTTATCC+AGG | - | chr1.4:37208226-37208245 | MS.gene068150:intron | 40.0% | |
| TGATGCTAGTGAGTGAGTAT+TGG | + | chr1.4:37206843-37206862 | None:intergenic | 40.0% | |
| TGGCAGATTAAGGGATCAAA+GGG | - | chr1.4:37206448-37206467 | MS.gene068150:CDS | 40.0% | |
| !! | CTTTGGTGTTGGATTGAACT+TGG | + | chr1.4:37206600-37206619 | None:intergenic | 40.0% |
| !! | GTTCAGTCTGTTTTTCTCTC+AGG | + | chr1.4:37206783-37206802 | None:intergenic | 40.0% |
| !! | TGGTGTTACTACTTTGGTGT+TGG | + | chr1.4:37206611-37206630 | None:intergenic | 40.0% |
| !! | TTTTCTAGCCTTCTTCACCA+TGG | + | chr1.4:37207675-37207694 | None:intergenic | 40.0% |
| ACAGCTTCAGATTGTGCCAT+TGG | + | chr1.4:37207701-37207720 | None:intergenic | 45.0% | |
| AGGTAGTAACAAAGTGGCCA+TGG | - | chr1.4:37207655-37207674 | MS.gene068150:intron | 45.0% | |
| CACGACCTTCTGTACAATAC+AGG | + | chr1.4:37208401-37208420 | None:intergenic | 45.0% | |
| GAGTTTGGCTGAACTGCAAT+CGG | + | chr1.4:37205783-37205802 | None:intergenic | 45.0% | |
| GGATCAAAGGGAAAGACACA+CGG | - | chr1.4:37206460-37206479 | MS.gene068150:CDS | 45.0% | |
| GTATTTGCAGAGTGCACCAA+AGG | - | chr1.4:37208550-37208569 | MS.gene068150:intron | 45.0% | |
| TCCTCTTCATCCAACAGACA+TGG | - | chr1.4:37205744-37205763 | MS.gene068150:CDS | 45.0% | |
| TGAAAATGGGGAGGAAGTCA+TGG | - | chr1.4:37208612-37208631 | MS.gene068150:intron | 45.0% | |
| TTGTGGAGTTGAAAATGGGG+AGG | - | chr1.4:37208603-37208622 | MS.gene068150:intron | 45.0% | |
| ! | CAGCTTCAGATTGTGCCATT+GGG | + | chr1.4:37207700-37207719 | None:intergenic | 45.0% |
| !! | AGTGAGTGAGTATTGGGCTA+AGG | + | chr1.4:37206836-37206855 | None:intergenic | 45.0% |
| !! | GGTTGGTAAAGAAAGGAGTG+TGG | - | chr1.4:37207921-37207940 | MS.gene068150:intron | 45.0% |
| !! | GTGAGTGAGTATTGGGCTAA+GGG | + | chr1.4:37206835-37206854 | None:intergenic | 45.0% |
| !! | AATATATGATAAAAAAAAAT+TGG | - | chr1.4:37207593-37207612 | MS.gene068150:intron | 5.0% |
| !! | ATATATATATATATATATGT+TGG | + | chr1.4:37206197-37206216 | None:intergenic | 5.0% |
| AACGACACTGCCATGTCTGT+TGG | + | chr1.4:37205757-37205776 | None:intergenic | 50.0% | |
| AACTCAGCGGCAATTCGGTA+AGG | - | chr1.4:37205798-37205817 | MS.gene068150:CDS | 50.0% | |
| AGCCAAACTCAGCGGCAATT+CGG | - | chr1.4:37205793-37205812 | MS.gene068150:CDS | 50.0% | |
| CAAAGTGGCCATGGTGAAGA+AGG | - | chr1.4:37207664-37207683 | MS.gene068150:intron | 50.0% | |
| GATCTTGTATGGGAGGTGGT+TGG | - | chr1.4:37207977-37207996 | MS.gene068150:intron | 50.0% | |
| GCCATGTCTGTTGGATGAAG+AGG | + | chr1.4:37205748-37205767 | None:intergenic | 50.0% | |
| GCTGCAGGTTCAGTAAAGGT+TGG | - | chr1.4:37208669-37208688 | MS.gene068150:intron | 50.0% | |
| GGAGTGTGGAAGTGAGTTTG+AGG | - | chr1.4:37207935-37207954 | MS.gene068150:intron | 50.0% | |
| GGCTAAGGGTTAGAGAAGTG+AGG | + | chr1.4:37206821-37206840 | None:intergenic | 50.0% | |
| GGGACTGCAACAATAAGGGT+TGG | - | chr1.4:37207904-37207923 | MS.gene068150:intron | 50.0% | |
| GGTGCTAAAGCCACTGAAGA+AGG | - | chr1.4:37207316-37207335 | MS.gene068150:CDS | 50.0% | |
| TACCGAATTGCCGCTGAGTT+TGG | + | chr1.4:37205798-37205817 | None:intergenic | 50.0% | |
| TGCAGTTCAGCCAAACTCAG+CGG | - | chr1.4:37205785-37205804 | MS.gene068150:CDS | 50.0% | |
| TTTGGTGAAGAACACAGCCC+CGG | - | chr1.4:37208446-37208465 | MS.gene068150:intron | 50.0% | |
| ! | CTTTCGGATTGGGTCGTTTC+CGG | + | chr1.4:37208103-37208122 | None:intergenic | 50.0% |
| !! | ATGAGAGTATTCGTGGCTGC+AGG | - | chr1.4:37208654-37208673 | MS.gene068150:intron | 50.0% |
| CGTGGCTGCAGGTTCAGTAA+AGG | - | chr1.4:37208665-37208684 | MS.gene068150:intron | 55.0% | |
| GTGAAGAACACAGCCCCGGT+AGG | - | chr1.4:37208450-37208469 | MS.gene068150:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 37205738 | 37208802 | 37205738 | ID=MS.gene068150 |
| chr1.4 | mRNA | 37205738 | 37208802 | 37205738 | ID=MS.gene068150.t1;Parent=MS.gene068150 |
| chr1.4 | exon | 37208726 | 37208802 | 37208726 | ID=MS.gene068150.t1.exon1;Parent=MS.gene068150.t1 |
| chr1.4 | CDS | 37208726 | 37208802 | 37208726 | ID=cds.MS.gene068150.t1;Parent=MS.gene068150.t1 |
| chr1.4 | exon | 37208582 | 37208606 | 37208582 | ID=MS.gene068150.t1.exon2;Parent=MS.gene068150.t1 |
| chr1.4 | CDS | 37208582 | 37208606 | 37208582 | ID=cds.MS.gene068150.t1;Parent=MS.gene068150.t1 |
| chr1.4 | exon | 37207074 | 37207494 | 37207074 | ID=MS.gene068150.t1.exon3;Parent=MS.gene068150.t1 |
| chr1.4 | CDS | 37207074 | 37207494 | 37207074 | ID=cds.MS.gene068150.t1;Parent=MS.gene068150.t1 |
| chr1.4 | exon | 37206759 | 37206883 | 37206759 | ID=MS.gene068150.t1.exon4;Parent=MS.gene068150.t1 |
| chr1.4 | CDS | 37206759 | 37206883 | 37206759 | ID=cds.MS.gene068150.t1;Parent=MS.gene068150.t1 |
| chr1.4 | exon | 37206408 | 37206681 | 37206408 | ID=MS.gene068150.t1.exon5;Parent=MS.gene068150.t1 |
| chr1.4 | CDS | 37206408 | 37206681 | 37206408 | ID=cds.MS.gene068150.t1;Parent=MS.gene068150.t1 |
| chr1.4 | exon | 37206073 | 37206128 | 37206073 | ID=MS.gene068150.t1.exon6;Parent=MS.gene068150.t1 |
| chr1.4 | CDS | 37206073 | 37206128 | 37206073 | ID=cds.MS.gene068150.t1;Parent=MS.gene068150.t1 |
| chr1.4 | exon | 37205738 | 37205980 | 37205738 | ID=MS.gene068150.t1.exon7;Parent=MS.gene068150.t1 |
| chr1.4 | CDS | 37205738 | 37205980 | 37205738 | ID=cds.MS.gene068150.t1;Parent=MS.gene068150.t1 |
| Gene Sequence |
| Protein sequence |
