AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene040691

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040691.t1 MTR_6g061070 74.788 472 104 5 8 472 7 470 0.0 705
MS.gene040691.t1 MTR_1g035520 58.333 300 111 7 34 322 87 383 5.31e-103 313
MS.gene040691.t1 MTR_1g035520 84.663 163 25 0 310 472 221 383 1.33e-91 283
MS.gene040691.t1 MTR_1g033740 64.467 197 43 4 1 191 1 176 6.76e-78 241
MS.gene040691.t1 MTR_1g035480 63.102 187 47 2 5 191 5 169 6.58e-76 236
MS.gene040691.t1 MTR_1g035500 60.417 192 55 2 4 191 6 180 7.61e-76 236
MS.gene040691.t1 MTR_1g035620 35.541 453 231 12 23 471 13 408 8.65e-66 218
MS.gene040691.t1 MTR_1g035570 33.632 446 230 10 28 472 14 394 1.96e-62 208
MS.gene040691.t1 MTR_1g035640 33.402 485 249 18 28 472 14 464 9.51e-56 192
MS.gene040691.t1 MTR_1g035510 44.715 246 108 8 34 275 1 222 9.66e-56 185
MS.gene040691.t1 MTR_1g035470 60.897 156 38 3 34 189 1 133 6.98e-54 177
MS.gene040691.t1 MTR_1g050845 31.190 420 215 11 23 437 13 363 7.59e-45 168
MS.gene040691.t1 MTR_1g035490 39.130 253 132 10 221 472 97 328 8.02e-41 149
MS.gene040691.t1 MTR_5g044670 29.167 336 205 10 19 345 16 327 3.04e-37 139
MS.gene040691.t1 MTR_3g098790 31.464 321 186 10 13 325 7 301 2.72e-34 131
MS.gene040691.t1 MTR_7g050710 28.972 321 204 6 12 325 6 309 1.99e-30 120
MS.gene040691.t1 MTR_7g050720 30.530 321 188 10 18 322 9 310 4.39e-29 117
MS.gene040691.t1 MTR_1g108780 25.490 459 305 14 35 471 13 456 5.07e-29 119
MS.gene040691.t1 MTR_7g050580 28.840 319 188 9 13 325 7 292 5.88e-29 116
MS.gene040691.t1 MTR_1g035650 35.111 225 107 7 19 237 9 200 1.21e-28 112
MS.gene040691.t1 MTR_6g043890 28.808 302 185 11 16 309 12 291 2.29e-27 112
MS.gene040691.t1 MTR_4g119990 26.190 336 221 10 9 334 5 323 4.90e-27 112
MS.gene040691.t1 MTR_7g050560 28.840 319 188 9 13 325 7 292 1.37e-26 109
MS.gene040691.t1 MTR_8g103940 25.667 487 300 19 17 471 37 493 1.73e-26 112
MS.gene040691.t1 MTR_7g050590 28.523 298 191 6 34 325 1 282 2.78e-26 108
MS.gene040691.t1 MTR_3g061310 30.189 318 168 15 17 322 10 285 1.40e-25 106
MS.gene040691.t1 MTR_1g035540 41.830 153 38 4 246 398 2 103 5.60e-25 100
MS.gene040691.t1 MTR_3g061350 31.410 312 165 16 19 321 12 283 6.37e-25 104
MS.gene040691.t1 MTR_1g035460 27.358 318 198 10 34 336 1 300 1.08e-22 100
MS.gene040691.t1 MTR_3g061370 27.302 315 188 13 12 321 2 280 1.64e-21 94.7
MS.gene040691.t1 MTR_3g061340 26.154 325 175 13 10 322 3 274 9.96e-21 92.4
MS.gene040691.t1 MTR_3g061320 29.022 317 181 15 10 322 3 279 6.65e-20 90.1
MS.gene040691.t1 MTR_1g021330 24.085 328 209 9 17 309 24 346 2.76e-19 89.7
MS.gene040691.t1 MTR_1g021360 25.773 291 176 12 31 309 194 456 4.05e-16 80.9
MS.gene040691.t1 MTR_3g061290 36.232 138 77 5 17 151 10 139 4.63e-16 77.0
MS.gene040691.t1 MTR_1g021440 24.316 329 209 13 17 309 21 345 2.32e-15 78.2
MS.gene040691.t1 MTR_1g021440 23.919 347 206 12 17 309 21 363 4.72e-15 77.0
MS.gene040691.t1 MTR_1g035440 39.806 103 58 2 16 114 12 114 5.81e-15 75.1
MS.gene040691.t1 MTR_3g061330 29.289 239 133 12 10 244 3 209 1.04e-14 74.3
MS.gene040691.t1 MTR_1g021400 22.045 313 222 8 17 309 28 338 1.83e-14 75.1
MS.gene040691.t1 MTR_3g005460 22.910 323 170 11 15 322 258 516 9.84e-14 73.6
MS.gene040691.t1 MTR_3g061220 35.593 118 60 3 17 132 10 113 1.18e-13 67.8
MS.gene040691.t1 MTR_5g070440 22.713 317 174 11 13 322 15 267 5.10e-13 69.7
MS.gene040691.t1 MTR_1g021350 22.727 330 200 12 17 320 20 320 1.06e-12 69.7
MS.gene040691.t1 MTR_1g021320 30.675 163 104 5 18 171 178 340 1.63e-12 70.5
MS.gene040691.t1 MTR_1g021435 21.791 335 210 13 17 310 20 343 2.58e-12 68.6
MS.gene040691.t1 MTR_1g021410 23.765 324 205 13 17 310 21 332 4.29e-12 67.8
MS.gene040691.t1 MTR_7g050640 40.206 97 55 2 15 108 9 105 4.66e-12 63.2
MS.gene040691.t1 MTR_3g005495 35.000 100 62 2 18 114 242 341 1.32e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040691.t1 AT3G18990 23.423 333 219 10 19 320 6 333 2.22e-19 89.7
MS.gene040691.t1 AT3G18990 23.423 333 219 10 19 320 6 333 3.26e-19 89.7

Find 83 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGACCCATTTGGAAGTTTA+AGG 0.139491 1.2:+34146384 None:intergenic
ATGGAATATGCGGGCAATTT+TGG 0.164513 1.2:-34143330 MS.gene040691:CDS
GAATTTACATGAGATGTTTA+AGG 0.185675 1.2:-34143156 MS.gene040691:CDS
TTTGGAAGTTTAAGGGATAT+TGG 0.281020 1.2:+34146392 None:intergenic
TGCAACGCGGTGATGGTATT+TGG 0.284893 1.2:-34146343 MS.gene040691:CDS
AGTTTAAGGGATATTGGATT+TGG 0.337634 1.2:+34146398 None:intergenic
CTCCGGGCCTGGTTCCTTTG+TGG 0.344484 1.2:+34144898 None:intergenic
GGAATTTCGTAGAGAGGTAT+TGG 0.365580 1.2:-34146430 MS.gene040691:CDS
TTATCACCTTCAACATGATA+TGG 0.368518 1.2:+34145561 None:intergenic
AAGAAGCATGGTATATTTAG+TGG 0.374789 1.2:-34143000 MS.gene040691:CDS
GGCCTGGTTCCTTTGTGGTT+GGG 0.379936 1.2:+34144903 None:intergenic
AATCTGACCCTCCTTTGTAT+TGG 0.385935 1.2:+34146264 None:intergenic
ATGGTATTTGGCTTCAGAAT+TGG 0.387348 1.2:-34146331 MS.gene040691:CDS
TATAATGAACATCTCGACTA+TGG 0.388378 1.2:-34142925 MS.gene040691:CDS
GGGCCTGGTTCCTTTGTGGT+TGG 0.394485 1.2:+34144902 None:intergenic
GGTCAGCATGCAAAATGAAT+TGG 0.396575 1.2:-34146367 MS.gene040691:CDS
TGACCCATTTGGAAGTTTAA+GGG 0.399923 1.2:+34146385 None:intergenic
CCTTGAAACTTCTCCGGGCC+TGG 0.411612 1.2:+34144887 None:intergenic
GACAACACCAGTAAAAGATA+TGG 0.416359 1.2:-34143349 MS.gene040691:CDS
AACCACAAAGGAACCAGGCC+CGG 0.431169 1.2:-34144900 MS.gene040691:CDS
ATTCAGTGGAGTTGAGAGTA+GGG 0.448522 1.2:-34142975 MS.gene040691:CDS
ATATCCCTTAAACTTCCAAA+TGG 0.449227 1.2:-34146389 MS.gene040691:CDS
TTAGAAGTGTTGGTGAGGAC+AGG 0.455257 1.2:-34145084 MS.gene040691:CDS
GCAATACCTTGAAACTTCTC+CGG 0.461040 1.2:+34144881 None:intergenic
TGCTTCTTCAACAGCTCACT+TGG 0.461685 1.2:+34143015 None:intergenic
ATAGTAATTGTGAATGAAAG+TGG 0.468831 1.2:+34144929 None:intergenic
TGGAGACACTTGCTTGTTTG+AGG 0.470821 1.2:-34142851 MS.gene040691:CDS
GACTATGGTTGGTTCACTAA+AGG 0.474605 1.2:-34142910 MS.gene040691:CDS
TACCTCTCTACGAAATTCCT+TGG 0.476007 1.2:+34146434 None:intergenic
AAGGAACATGAGTTGAAAGT+TGG 0.478819 1.2:-34144986 MS.gene040691:CDS
TGAGAGTAGGGGAAGGAACA+TGG 0.483751 1.2:-34142963 MS.gene040691:CDS
TTATCGCCATATCATGTTGA+AGG 0.488274 1.2:-34145567 MS.gene040691:CDS
AGTGAAACTAGGACTCTCAT+TGG 0.512039 1.2:+34145596 None:intergenic
AGTAGCAATGCCATTTGAGT+TGG 0.513443 1.2:+34146064 None:intergenic
TTCGAAAACCAACTAGGTAT+CGG 0.513588 1.2:+34145145 None:intergenic
AGAGATTGCAAAGTAAAGAC+TGG 0.515563 1.2:-34142871 MS.gene040691:CDS
AATTCAGTGGAGTTGAGAGT+AGG 0.518002 1.2:-34142976 MS.gene040691:CDS
TAATGGAAACACAGGAGGCA+TGG 0.520474 1.2:-34145676 MS.gene040691:CDS
TGTTGAAGGTGATAATAGAT+TGG 0.520882 1.2:-34145553 MS.gene040691:intron
TATCCCTTAAACTTCCAAAT+GGG 0.521322 1.2:-34146388 MS.gene040691:CDS
TGTGCAAAATCATGTGTTCA+AGG 0.521657 1.2:-34142821 MS.gene040691:CDS
TATTCTTTCGAAAACCAACT+AGG 0.522446 1.2:+34145139 None:intergenic
CCAGGCCCGGAGAAGTTTCA+AGG 0.523708 1.2:-34144887 MS.gene040691:intron
CAATACCTTGAAACTTCTCC+GGG 0.525380 1.2:+34144882 None:intergenic
TTCAGTGGAGTTGAGAGTAG+GGG 0.529294 1.2:-34142974 MS.gene040691:CDS
TGAAACAGCCGATACCTAGT+TGG 0.537742 1.2:-34145153 MS.gene040691:intron
AAGGCAACAATTAGAAGTGT+TGG 0.542696 1.2:-34145094 MS.gene040691:CDS
AATGGAAACACAGGAGGCAT+GGG 0.543418 1.2:-34145675 MS.gene040691:CDS
TACATGAATGAGTTATTGCA+AGG 0.543984 1.2:-34145118 MS.gene040691:CDS
ATGAACATCTCGACTATGGT+TGG 0.544359 1.2:-34142921 MS.gene040691:CDS
GTCAGCATGCAAAATGAATT+GGG 0.544595 1.2:-34146366 MS.gene040691:CDS
GTGAAACTAGGACTCTCATT+GGG 0.547777 1.2:+34145597 None:intergenic
TATATTTAGTGGAAATTCAG+TGG 0.549056 1.2:-34142989 MS.gene040691:CDS
ACTACTGCTGCTACACCTCA+AGG 0.557213 1.2:-34146044 MS.gene040691:CDS
ATCCCAACCACAAAGGAACC+AGG 0.559337 1.2:-34144905 MS.gene040691:CDS
TAGAAGTGTTGGTGAGGACA+GGG 0.562489 1.2:-34145083 MS.gene040691:CDS
TTTGGCTTCAGAATTGGAAG+AGG 0.566576 1.2:-34146325 MS.gene040691:CDS
GATAATTTGACAGTGAAACT+AGG 0.566923 1.2:+34145585 None:intergenic
GTAAAAGATATGGAATATGC+GGG 0.570556 1.2:-34143339 MS.gene040691:CDS
AGAATTGGAAGAGGTTTGCA+TGG 0.571811 1.2:-34146316 MS.gene040691:CDS
ATGGTTGGTTCACTAAAGGT+TGG 0.573713 1.2:-34142906 MS.gene040691:CDS
TTGTGAATGTTAGTCCCTTG+AGG 0.580089 1.2:+34146029 None:intergenic
AATTGGGTGCAACGCGGTGA+TGG 0.587564 1.2:-34146350 MS.gene040691:CDS
TGTGCTTGCAGATGATTCCA+AGG 0.587783 1.2:-34146451 MS.gene040691:intron
GCAGAGGCTAATGGAAACAC+AGG 0.596384 1.2:-34145684 MS.gene040691:intron
AACAATTAGAAGTGTTGGTG+AGG 0.601806 1.2:-34145089 MS.gene040691:CDS
TTTGCATGGTCGCTCCGATG+TGG 0.602338 1.2:-34146302 MS.gene040691:CDS
AGTAAAAGATATGGAATATG+CGG 0.604042 1.2:-34143340 MS.gene040691:CDS
TTCCAAGGAATTTCGTAGAG+AGG 0.604264 1.2:-34146436 MS.gene040691:CDS
GAGCGTGGTAGTGAAGCTAA+AGG 0.613987 1.2:-34147365 MS.gene040691:CDS
AGTGAGCTGTTGAAGAAGCA+TGG 0.617628 1.2:-34143012 MS.gene040691:CDS
TACTATTATCCCAACCACAA+AGG 0.624953 1.2:-34144912 MS.gene040691:CDS
GTGTTGGTGAGGACAGGGCA+TGG 0.626789 1.2:-34145078 MS.gene040691:CDS
GAATGAGTTATTGCAAGGGA+AGG 0.643476 1.2:-34145113 MS.gene040691:CDS
GTGGAGTTGAGAGTAGGGGA+AGG 0.647557 1.2:-34142970 MS.gene040691:CDS
GAACAACACGGCAATGAGCG+TGG 0.647962 1.2:-34147380 MS.gene040691:CDS
CTACTGCTGCTACACCTCAA+GGG 0.654975 1.2:-34146043 MS.gene040691:CDS
ACATGAATGAGTTATTGCAA+GGG 0.661417 1.2:-34145117 MS.gene040691:CDS
AAACTAAAAGATCTCCACAT+CGG 0.700040 1.2:+34146288 None:intergenic
GAGGCTAATGGAAACACAGG+AGG 0.702704 1.2:-34145681 MS.gene040691:CDS
TGGACATGTGCAGAAAACCA+AGG 0.707757 1.2:-34143390 MS.gene040691:intron
AGCATGTGGTTTGAACAACA+CGG 0.751745 1.2:-34147392 MS.gene040691:CDS
AAAATGAATTGGGTGCAACG+CGG 0.811094 1.2:-34146356 MS.gene040691:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTTATTGAATAATAAAAA+TGG + chr1.2:34143120-34143139 None:intergenic 10.0%
!! GTTTATTGAATAATAAAAAT+GGG + chr1.2:34143119-34143138 None:intergenic 10.0%
!! TGTTTGTAATAAATAAATTA+AGG + chr1.2:34146018-34146037 None:intergenic 10.0%
!!! TAAAATATACAAATTTTTCA+AGG - chr1.2:34146583-34146602 MS.gene040691:intron 10.0%
!! AATAATTTCTTTGATTCTAT+TGG - chr1.2:34143233-34143252 MS.gene040691:intron 15.0%
!! TAAACAGATGAATAAATAAA+AGG + chr1.2:34144250-34144269 None:intergenic 15.0%
!! TTATTTATTCATCTGTTTAT+GGG - chr1.2:34144251-34144270 MS.gene040691:intron 15.0%
!! TTTATTATCATTAATGGAAT+TGG - chr1.2:34143388-34143407 MS.gene040691:intron 15.0%
!! TTTATTTATTCATCTGTTTA+TGG - chr1.2:34144250-34144269 MS.gene040691:intron 15.0%
!!! ATATTTTAAGGTTTAAATCT+TGG - chr1.2:34145461-34145480 MS.gene040691:intron 15.0%
!!! CAAATGTGTAAAATATTTTA+AGG - chr1.2:34145449-34145468 MS.gene040691:intron 15.0%
!!! CTAAGATTAATTTTTATACA+TGG - chr1.2:34146642-34146661 MS.gene040691:intron 15.0%
!!! CTATTTTATTTTACAGTTAT+TGG + chr1.2:34146400-34146419 None:intergenic 15.0%
!! AAAAGCAATGAGTATAAATT+TGG + chr1.2:34143719-34143738 None:intergenic 20.0%
!! AAAGAAAACAACATAGTTTA+AGG + chr1.2:34146990-34147009 None:intergenic 20.0%
!! AAGAATATACGTAAATAAAG+TGG + chr1.2:34144392-34144411 None:intergenic 20.0%
!! ACAGATACTAATACATAAAT+GGG + chr1.2:34142942-34142961 None:intergenic 20.0%
!! AGAATATACGTAAATAAAGT+GGG + chr1.2:34144391-34144410 None:intergenic 20.0%
!! TACAGATACTAATACATAAA+TGG + chr1.2:34142943-34142962 None:intergenic 20.0%
!! TACGGATTTATTATCATTAA+TGG - chr1.2:34143382-34143401 MS.gene040691:intron 20.0%
!! TGATTGAATAATGAAAACTA+AGG + chr1.2:34143657-34143676 None:intergenic 20.0%
!!! AATTTGTATGGATTAAAAAG+TGG + chr1.2:34144337-34144356 None:intergenic 20.0%
!!! ACTTACTTATGTAATTTGTA+TGG + chr1.2:34144349-34144368 None:intergenic 20.0%
!!! GAGAAAGAAGTTTATTTTAA+TGG + chr1.2:34145992-34146011 None:intergenic 20.0%
!!! GATTTTAGTCATTCTAATAA+TGG - chr1.2:34146507-34146526 MS.gene040691:intron 20.0%
!!! TTTGTTTTTAGTGTCAAAAT+GGG + chr1.2:34143354-34143373 None:intergenic 20.0%
! AAACAGTCTATTTAAAGAGT+TGG + chr1.2:34143483-34143502 None:intergenic 25.0%
! AATAGAAAAAATGACTGATG+TGG - chr1.2:34146415-34146434 MS.gene040691:CDS 25.0%
! AATGATAATAAATCCGTACA+GGG + chr1.2:34143380-34143399 None:intergenic 25.0%
! ACTAACAGAAAACATATTCA+TGG - chr1.2:34144815-34144834 MS.gene040691:intron 25.0%
! AGTAAAAGATATGGAATATG+CGG - chr1.2:34146856-34146875 MS.gene040691:intron 25.0%
! ATAGTAATTGTGAATGAAAG+TGG + chr1.2:34145270-34145289 None:intergenic 25.0%
! ATGTTAATGTTACTGTCATT+AGG - chr1.2:34145612-34145631 MS.gene040691:CDS 25.0%
! CTCTTTAAATAGACTGTTTA+AGG - chr1.2:34143484-34143503 MS.gene040691:intron 25.0%
! GAATTTACATGAGATGTTTA+AGG - chr1.2:34147040-34147059 MS.gene040691:intron 25.0%
! GAGATATGAAAATCCAAAAA+AGG + chr1.2:34145962-34145981 None:intergenic 25.0%
! TAATGATAATAAATCCGTAC+AGG + chr1.2:34143381-34143400 None:intergenic 25.0%
! TATATTTAGTGGAAATTCAG+TGG - chr1.2:34147207-34147226 MS.gene040691:intron 25.0%
! TATTAACAAGAGAGTCATTT+GGG + chr1.2:34144777-34144796 None:intergenic 25.0%
! TATTACAGAAAAAGTAGTAC+AGG + chr1.2:34144676-34144695 None:intergenic 25.0%
! TGTTAATGTTACTGTCATTA+GGG - chr1.2:34145613-34145632 MS.gene040691:CDS 25.0%
! TTAAACACACTATCATCTAT+TGG + chr1.2:34146442-34146461 None:intergenic 25.0%
! TTACTAGACTTTATTCTTTC+TGG - chr1.2:34142994-34143013 MS.gene040691:CDS 25.0%
! TTGAAGATCAAAATAACTAG+CGG - chr1.2:34144907-34144926 MS.gene040691:CDS 25.0%
! TTTGTTCATATATATGCAGT+TGG - chr1.2:34147150-34147169 MS.gene040691:intron 25.0%
!! AATAGATGATAGTGTGTTTA+AGG - chr1.2:34146441-34146460 MS.gene040691:CDS 25.0%
!! ATAGATGATAGTGTGTTTAA+GGG - chr1.2:34146442-34146461 MS.gene040691:CDS 25.0%
!! CAAAATTTGAGATGAACTAA+GGG + chr1.2:34144298-34144317 None:intergenic 25.0%
!! TTTGATTGATTGTAGTTTGT+TGG + chr1.2:34145433-34145452 None:intergenic 25.0%
!! TTTTATAACATCATCAGACA+AGG - chr1.2:34147064-34147083 MS.gene040691:intron 25.0%
!!! AAATGGGTTAGTTTATACAT+AGG + chr1.2:34142926-34142945 None:intergenic 25.0%
!!! AATGGGTTAGTTTATACATA+GGG + chr1.2:34142925-34142944 None:intergenic 25.0%
!!! ACAAAAACACATTGTTTTAG+GGG - chr1.2:34146911-34146930 MS.gene040691:intron 25.0%
!!! ATTGTCATGTTTACCTTTTT+TGG - chr1.2:34145946-34145965 MS.gene040691:intron 25.0%
!!! CACAAAAACACATTGTTTTA+GGG - chr1.2:34146910-34146929 MS.gene040691:intron 25.0%
!!! CTTTTAGTTTTCCAATACAA+AGG - chr1.2:34143921-34143940 MS.gene040691:intron 25.0%
!!! GTTTGTTTTTAGTGTCAAAA+TGG + chr1.2:34143355-34143374 None:intergenic 25.0%
AAAAAGAGAACCAACTCAAA+TGG - chr1.2:34144122-34144141 MS.gene040691:intron 30.0%
AAACAACACTAATAAGTGGA+CGG + chr1.2:34145805-34145824 None:intergenic 30.0%
AAACTAAAAGATCTCCACAT+CGG + chr1.2:34143911-34143930 None:intergenic 30.0%
AAATCAGTTTCACATGGTTT+GGG - chr1.2:34145733-34145752 MS.gene040691:intron 30.0%
AACGCAATAAAATAGAGCTT+AGG + chr1.2:34145580-34145599 None:intergenic 30.0%
AAGCATGATCAAAACAGTAT+TGG + chr1.2:34143539-34143558 None:intergenic 30.0%
ACACAAACAACACTAATAAG+TGG + chr1.2:34145809-34145828 None:intergenic 30.0%
ACATGAATGAGTTATTGCAA+GGG - chr1.2:34145079-34145098 MS.gene040691:CDS 30.0%
ACGCAATAAAATAGAGCTTA+GGG + chr1.2:34145579-34145598 None:intergenic 30.0%
AGCATGATCAAAACAGTATT+GGG + chr1.2:34143538-34143557 None:intergenic 30.0%
AGTTTAAGGGATATTGGATT+TGG + chr1.2:34143801-34143820 None:intergenic 30.0%
ATATCCCTTAAACTTCCAAA+TGG - chr1.2:34143807-34143826 MS.gene040691:intron 30.0%
ATTAACAAGAGAGTCATTTG+GGG + chr1.2:34144776-34144795 None:intergenic 30.0%
CGTAACAAATACTTGTTCAA+CGG - chr1.2:34145676-34145695 MS.gene040691:CDS 30.0%
CTATTAACAAGAGAGTCATT+TGG + chr1.2:34144778-34144797 None:intergenic 30.0%
GATAATTTGACAGTGAAACT+AGG + chr1.2:34144614-34144633 None:intergenic 30.0%
GTAAAAGATATGGAATATGC+GGG - chr1.2:34146857-34146876 MS.gene040691:intron 30.0%
TAAAAACAAACAACCCTGTA+CGG - chr1.2:34143364-34143383 MS.gene040691:CDS 30.0%
TACATGAATGAGTTATTGCA+AGG - chr1.2:34145078-34145097 MS.gene040691:CDS 30.0%
TAGTAGTCAATGTACATGTT+TGG - chr1.2:34143062-34143081 MS.gene040691:intron 30.0%
TATAATGAACATCTCGACTA+TGG - chr1.2:34147271-34147290 MS.gene040691:intron 30.0%
TATCCCTTAAACTTCCAAAT+GGG - chr1.2:34143808-34143827 MS.gene040691:intron 30.0%
TATTCTTTCGAAAACCAACT+AGG + chr1.2:34145060-34145079 None:intergenic 30.0%
TCAATACATTCAGTTCCTAT+AGG + chr1.2:34144739-34144758 None:intergenic 30.0%
TGTTGAAGGTGATAATAGAT+TGG - chr1.2:34144643-34144662 MS.gene040691:intron 30.0%
TTATCACCTTCAACATGATA+TGG + chr1.2:34144638-34144657 None:intergenic 30.0%
TTCAAGGTTTCAATTGTTTG+AGG - chr1.2:34147391-34147410 MS.gene040691:CDS 30.0%
TTCTATTGGACTTAAGAATG+TGG - chr1.2:34143247-34143266 MS.gene040691:intron 30.0%
TTTGGAAGTTTAAGGGATAT+TGG + chr1.2:34143807-34143826 None:intergenic 30.0%
! AACTCTTTTCAGCATTTGAA+AGG + chr1.2:34144481-34144500 None:intergenic 30.0%
! AAGAAGCATGGTATATTTAG+TGG - chr1.2:34147196-34147215 MS.gene040691:intron 30.0%
! CCAAAATTTGAGATGAACTA+AGG + chr1.2:34144299-34144318 None:intergenic 30.0%
! CCTTAGTTCATCTCAAATTT+TGG - chr1.2:34144296-34144315 MS.gene040691:intron 30.0%
! CGTTGAACAAGTATTTGTTA+CGG + chr1.2:34145678-34145697 None:intergenic 30.0%
! GCACAAAAACACATTGTTTT+AGG - chr1.2:34146909-34146928 MS.gene040691:intron 30.0%
! GCATATTCCATATCTTTTAC+TGG + chr1.2:34146857-34146876 None:intergenic 30.0%
! TAAGCTCTATTTTATTGCGT+TGG - chr1.2:34145579-34145598 MS.gene040691:CDS 30.0%
! TAGTTTTCCAATACAAAGGA+GGG - chr1.2:34143925-34143944 MS.gene040691:intron 30.0%
! TTTTCAACTGAACCCAAAAT+GGG + chr1.2:34143088-34143107 None:intergenic 30.0%
!! ATTTTGGAGATGGAATTTCA+AGG - chr1.2:34146882-34146901 MS.gene040691:intron 30.0%
!! TTAGTTTTCCAATACAAAGG+AGG - chr1.2:34143924-34143943 MS.gene040691:intron 30.0%
!! TTTGTATTTTCAGTGTCACT+AGG + chr1.2:34144089-34144108 None:intergenic 30.0%
!!! GAGTTTTTAAAGTTTTGCAG+AGG - chr1.2:34144496-34144515 MS.gene040691:intron 30.0%
AACAACACTAATAAGTGGAC+GGG + chr1.2:34145804-34145823 None:intergenic 35.0%
ACAAATACTTGTTCAACGGT+CGG - chr1.2:34145680-34145699 MS.gene040691:CDS 35.0%
ACATACATTGAACAGTGTGT+AGG + chr1.2:34145893-34145912 None:intergenic 35.0%
AGAGAGAAGAAACAAGAACA+GGG - chr1.2:34146070-34146089 MS.gene040691:CDS 35.0%
AGAGATTGCAAAGTAAAGAC+TGG - chr1.2:34147325-34147344 MS.gene040691:CDS 35.0%
CAAATCAGTTTCACATGGTT+TGG - chr1.2:34145732-34145751 MS.gene040691:intron 35.0%
CACACACATAGCTATATACA+TGG + chr1.2:34147114-34147133 None:intergenic 35.0%
CGCAATAAAATAGAGCTTAG+GGG + chr1.2:34145578-34145597 None:intergenic 35.0%
CTAAAAGTGATATATCTGCG+AGG - chr1.2:34146673-34146692 MS.gene040691:intron 35.0%
CTGTTGCAAAATGTTTGGTA+TGG - chr1.2:34143560-34143579 MS.gene040691:intron 35.0%
GACAACACCAGTAAAAGATA+TGG - chr1.2:34146847-34146866 MS.gene040691:intron 35.0%
GCAATAAAATAGAGCTTAGG+GGG + chr1.2:34145577-34145596 None:intergenic 35.0%
GCATGATCAAAACAGTATTG+GGG + chr1.2:34143537-34143556 None:intergenic 35.0%
GCTTTCTGTTGCAAAATGTT+TGG - chr1.2:34143555-34143574 MS.gene040691:intron 35.0%
GTCAGCATGCAAAATGAATT+GGG - chr1.2:34143830-34143849 MS.gene040691:intron 35.0%
GTGTAATATTCCCACATATC+TGG - chr1.2:34143614-34143633 MS.gene040691:intron 35.0%
TACTATTATCCCAACCACAA+AGG - chr1.2:34145284-34145303 MS.gene040691:intron 35.0%
TGACCCATTTGGAAGTTTAA+GGG + chr1.2:34143814-34143833 None:intergenic 35.0%
TGAGACAAATCAGTTTCACA+TGG - chr1.2:34145727-34145746 MS.gene040691:intron 35.0%
TGTGCAAAATCATGTGTTCA+AGG - chr1.2:34147375-34147394 MS.gene040691:CDS 35.0%
TTAACAAGAGAGTCATTTGG+GGG + chr1.2:34144775-34144794 None:intergenic 35.0%
TTATCGCCATATCATGTTGA+AGG - chr1.2:34144629-34144648 MS.gene040691:intron 35.0%
TTCGAAAACCAACTAGGTAT+CGG + chr1.2:34145054-34145073 None:intergenic 35.0%
TTCTGTCAAAATGGAATGAG+CGG - chr1.2:34145770-34145789 MS.gene040691:intron 35.0%
! AAGGAACATGAGTTGAAAGT+TGG - chr1.2:34145210-34145229 MS.gene040691:intron 35.0%
! AAGGCAACAATTAGAAGTGT+TGG - chr1.2:34145102-34145121 MS.gene040691:CDS 35.0%
! AGAGGCTTTCATTTTCCTAT+AGG - chr1.2:34144721-34144740 MS.gene040691:intron 35.0%
! AGTATTTGTTACGGTTACGT+CGG + chr1.2:34145669-34145688 None:intergenic 35.0%
! ATGGTATTTGGCTTCAGAAT+TGG - chr1.2:34143865-34143884 MS.gene040691:intron 35.0%
! CAAGAGCAGTTTTCTAATGA+GGG - chr1.2:34145167-34145186 MS.gene040691:intron 35.0%
! CATGATCAAAACAGTATTGG+GGG + chr1.2:34143536-34143555 None:intergenic 35.0%
! GTGTTGTCTCTGATTTTTCT+TGG + chr1.2:34146835-34146854 None:intergenic 35.0%
! GTTTTCAACTGAACCCAAAA+TGG + chr1.2:34143089-34143108 None:intergenic 35.0%
! TAAAGTTTTGCAGAGGCTAA+TGG - chr1.2:34144503-34144522 MS.gene040691:intron 35.0%
!! AACAATTAGAAGTGTTGGTG+AGG - chr1.2:34145107-34145126 MS.gene040691:CDS 35.0%
!! ACGAGGTTTTATGACAGTAA+GGG + chr1.2:34146333-34146352 None:intergenic 35.0%
!! AGGTTGGAAGTCATTTTCAA+AGG - chr1.2:34145191-34145210 MS.gene040691:intron 35.0%
!! AGTTGGTTCTCTTTTTCTTG+AGG + chr1.2:34144118-34144137 None:intergenic 35.0%
!! GTTGGTTCTCTTTTTCTTGA+GGG + chr1.2:34144117-34144136 None:intergenic 35.0%
!! TTGGTTCTCTTTTTCTTGAG+GGG + chr1.2:34144116-34144135 None:intergenic 35.0%
!!! GGTTCACTTTTTCTGATCTA+CGG - chr1.2:34146250-34146269 MS.gene040691:CDS 35.0%
!!! GTTCACTTTTTCTGATCTAC+GGG - chr1.2:34146251-34146270 MS.gene040691:CDS 35.0%
AAAATGAATTGGGTGCAACG+CGG - chr1.2:34143840-34143859 MS.gene040691:intron 40.0%
AACCTCGTGATGAAGGATAA+TGG - chr1.2:34146345-34146364 MS.gene040691:CDS 40.0%
AACTAGCGGAAGAGACATTT+GGG - chr1.2:34144921-34144940 MS.gene040691:CDS 40.0%
AATCTGACCCTCCTTTGTAT+TGG + chr1.2:34143935-34143954 None:intergenic 40.0%
AATTCAGTGGAGTTGAGAGT+AGG - chr1.2:34147220-34147239 MS.gene040691:intron 40.0%
ACCTAAGCAAACCAGATATG+TGG + chr1.2:34143628-34143647 None:intergenic 40.0%
AGAATTGGAAGAGGTTTGCA+TGG - chr1.2:34143880-34143899 MS.gene040691:intron 40.0%
AGGGATCTACTGAAGAAGTT+GGG + chr1.2:34146776-34146795 None:intergenic 40.0%
AGTGAAACTAGGACTCTCAT+TGG + chr1.2:34144603-34144622 None:intergenic 40.0%
ATGAACATCTCGACTATGGT+TGG - chr1.2:34147275-34147294 MS.gene040691:intron 40.0%
ATGTATGTGTGCCATCAAAC+AGG - chr1.2:34145905-34145924 MS.gene040691:intron 40.0%
ATTCAGTGGAGTTGAGAGTA+GGG - chr1.2:34147221-34147240 MS.gene040691:intron 40.0%
ATTCATGCACGAAATGTGCA+AGG + chr1.2:34144992-34145011 None:intergenic 40.0%
CAATACCTTGAAACTTCTCC+GGG + chr1.2:34145317-34145336 None:intergenic 40.0%
CAGAGAGAAGAAACAAGAAC+AGG - chr1.2:34146069-34146088 MS.gene040691:CDS 40.0%
CCTAAGCAAACCAGATATGT+GGG + chr1.2:34143627-34143646 None:intergenic 40.0%
CTGACCCATTTGGAAGTTTA+AGG + chr1.2:34143815-34143834 None:intergenic 40.0%
GAATGAGTTATTGCAAGGGA+AGG - chr1.2:34145083-34145102 MS.gene040691:CDS 40.0%
GAGATGAGAGATATACAGAG+AGG - chr1.2:34146111-34146130 MS.gene040691:CDS 40.0%
GCAATACCTTGAAACTTCTC+CGG + chr1.2:34145318-34145337 None:intergenic 40.0%
GGTCAGCATGCAAAATGAAT+TGG - chr1.2:34143829-34143848 MS.gene040691:intron 40.0%
GTATACTTGCTTCACTTTCG+TGG - chr1.2:34143275-34143294 MS.gene040691:intron 40.0%
GTCATAAAACCTCGTGATGA+AGG - chr1.2:34146338-34146357 MS.gene040691:CDS 40.0%
GTGAAACTAGGACTCTCATT+GGG + chr1.2:34144602-34144621 None:intergenic 40.0%
GTTGTGGGTAGTGTAAATTG+TGG - chr1.2:34146371-34146390 MS.gene040691:CDS 40.0%
TAACTAGCGGAAGAGACATT+TGG - chr1.2:34144920-34144939 MS.gene040691:CDS 40.0%
TACCTCTCTACGAAATTCCT+TGG + chr1.2:34143765-34143784 None:intergenic 40.0%
TGCAACCCAGCAAAAAGTTT+CGG - chr1.2:34144208-34144227 MS.gene040691:intron 40.0%
TGTATGTGTGCCATCAAACA+GGG - chr1.2:34145906-34145925 MS.gene040691:intron 40.0%
TTCCAAGGAATTTCGTAGAG+AGG - chr1.2:34143760-34143779 MS.gene040691:intron 40.0%
TTCTTTGGTGAGCAGTTGTT+GGG - chr1.2:34146276-34146295 MS.gene040691:CDS 40.0%
TTGTGAATGTTAGTCCCTTG+AGG + chr1.2:34144170-34144189 None:intergenic 40.0%
! ACTTACCCGAAACTTTTTGC+TGG + chr1.2:34144217-34144236 None:intergenic 40.0%
! AGTAGCAATGCCATTTGAGT+TGG + chr1.2:34144135-34144154 None:intergenic 40.0%
! ATGGAATATGCGGGCAATTT+TGG - chr1.2:34146866-34146885 MS.gene040691:intron 40.0%
! ATGGTTGGTTCACTAAAGGT+TGG - chr1.2:34147290-34147309 MS.gene040691:intron 40.0%
! ATTTTGCATGCTGACCCATT+TGG + chr1.2:34143825-34143844 None:intergenic 40.0%
! CTGATTTTTCTTGGACTCCT+TGG + chr1.2:34146826-34146845 None:intergenic 40.0%
! CTGTTCTTGTTTCTTCTCTC+TGG + chr1.2:34146071-34146090 None:intergenic 40.0%
! CTTACCCGAAACTTTTTGCT+GGG + chr1.2:34144216-34144235 None:intergenic 40.0%
! GACTATGGTTGGTTCACTAA+AGG - chr1.2:34147286-34147305 MS.gene040691:intron 40.0%
! GCAAGAGCAGTTTTCTAATG+AGG - chr1.2:34145166-34145185 MS.gene040691:intron 40.0%
! GGAATTTCGTAGAGAGGTAT+TGG - chr1.2:34143766-34143785 MS.gene040691:intron 40.0%
! GTACATGTTTGGCCCATTTT+GGG - chr1.2:34143073-34143092 MS.gene040691:intron 40.0%
! TCGTGATGAAGGATAATGGT+GGG - chr1.2:34146349-34146368 MS.gene040691:CDS 40.0%
! TGTACATGTTTGGCCCATTT+TGG - chr1.2:34143072-34143091 MS.gene040691:intron 40.0%
! TTGTTTCTTCTCTCTGGTAG+TGG + chr1.2:34146065-34146084 None:intergenic 40.0%
! TTTGGCTTCAGAATTGGAAG+AGG - chr1.2:34143871-34143890 MS.gene040691:intron 40.0%
!! CACGAGGTTTTATGACAGTA+AGG + chr1.2:34146334-34146353 None:intergenic 40.0%
!! CGAGGTTTTATGACAGTAAG+GGG + chr1.2:34146332-34146351 None:intergenic 40.0%
!! GGCAATACCATTTTTGCCTT+CGG - chr1.2:34143581-34143600 MS.gene040691:intron 40.0%
AAACTGACGTTGAAACGGTC+GGG - chr1.2:34146224-34146243 MS.gene040691:CDS 45.0%
ACCAAGTGATTGAGCACAAG+TGG + chr1.2:34143456-34143475 None:intergenic 45.0%
ACCACTTGTGCTCAATCACT+TGG - chr1.2:34143452-34143471 MS.gene040691:intron 45.0%
AGTGAGCTGTTGAAGAAGCA+TGG - chr1.2:34147184-34147203 MS.gene040691:intron 45.0%
CACCATTATCCTTCATCACG+AGG + chr1.2:34146350-34146369 None:intergenic 45.0%
CAGGGATCTACTGAAGAAGT+TGG + chr1.2:34146777-34146796 None:intergenic 45.0%
CCACCAAATGATGAATCGCT+CGG + chr1.2:34143423-34143442 None:intergenic 45.0%
CGAAAGCGGTTCTGTCAAAA+TGG - chr1.2:34145761-34145780 MS.gene040691:intron 45.0%
GAAACTGACGTTGAAACGGT+CGG - chr1.2:34146223-34146242 MS.gene040691:CDS 45.0%
GACCGTTTCAACGTCAGTTT+CGG + chr1.2:34146224-34146243 None:intergenic 45.0%
GCAACCCAGCAAAAAGTTTC+GGG - chr1.2:34144209-34144228 MS.gene040691:intron 45.0%
GGGATCTACTGAAGAAGTTG+GGG + chr1.2:34146775-34146794 None:intergenic 45.0%
GTTACGGTTACGTCGGATTT+CGG + chr1.2:34145662-34145681 None:intergenic 45.0%
GTTCTTTGGTGAGCAGTTGT+TGG - chr1.2:34146275-34146294 MS.gene040691:CDS 45.0%
TAATGGAAACACAGGAGGCA+TGG - chr1.2:34144520-34144539 MS.gene040691:intron 45.0%
TCAAGACACACCCTGTTTGA+TGG + chr1.2:34145919-34145938 None:intergenic 45.0%
TCTGATCTACGGGTGTTCTT+TGG - chr1.2:34146261-34146280 MS.gene040691:CDS 45.0%
TGAAACAGCCGATACCTAGT+TGG - chr1.2:34145043-34145062 MS.gene040691:CDS 45.0%
TGAAAGCCTCTCACACAGTT+AGG + chr1.2:34144712-34144731 None:intergenic 45.0%
TGCTTCTTCAACAGCTCACT+TGG + chr1.2:34147184-34147203 None:intergenic 45.0%
TGGAGACACTTGCTTGTTTG+AGG - chr1.2:34147345-34147364 MS.gene040691:CDS 45.0%
TGTGCTTGCAGATGATTCCA+AGG - chr1.2:34143745-34143764 MS.gene040691:intron 45.0%
TTACACATAGAGAGAGCCGA+AGG + chr1.2:34143600-34143619 None:intergenic 45.0%
TTCAGTGGAGTTGAGAGTAG+GGG - chr1.2:34147222-34147241 MS.gene040691:intron 45.0%
TTCGTACCTAACTGTGTGAG+AGG - chr1.2:34144703-34144722 MS.gene040691:intron 45.0%
TTGAGCACAAGTGGTTAACG+AGG + chr1.2:34143447-34143466 None:intergenic 45.0%
! AATGGAAACACAGGAGGCAT+GGG - chr1.2:34144521-34144540 MS.gene040691:intron 45.0%
! AGCAGTTTTCTAATGAGGGC+AGG - chr1.2:34145171-34145190 MS.gene040691:intron 45.0%
! CACTAATAAGTGGACGGGTT+CGG + chr1.2:34145799-34145818 None:intergenic 45.0%
! CAGTTTCACATGGTTTGGGA+CGG - chr1.2:34145737-34145756 MS.gene040691:intron 45.0%
! CTCGTGATGAAGGATAATGG+TGG - chr1.2:34146348-34146367 MS.gene040691:CDS 45.0%
! GTTTTCTAATGAGGGCAGGT+TGG - chr1.2:34145175-34145194 MS.gene040691:intron 45.0%
! TGACGGGTCTAACGGAATAA+CGG + chr1.2:34146197-34146216 None:intergenic 45.0%
!! AACTAGGTATCGGCTGTTTC+AGG + chr1.2:34145044-34145063 None:intergenic 45.0%
!! CCCACATATCTGGTTTGCTT+AGG - chr1.2:34143624-34143643 MS.gene040691:intron 45.0%
!! GAAGGATAATGGTGGGTTGT+GGG - chr1.2:34146356-34146375 MS.gene040691:CDS 45.0%
!! TAGAAGTGTTGGTGAGGACA+GGG - chr1.2:34145113-34145132 MS.gene040691:CDS 45.0%
!! TATGCGGGCAATTTTGGAGA+TGG - chr1.2:34146872-34146891 MS.gene040691:intron 45.0%
!! TGAAGGATAATGGTGGGTTG+TGG - chr1.2:34146355-34146374 MS.gene040691:CDS 45.0%
!! TTAGAAGTGTTGGTGAGGAC+AGG - chr1.2:34145112-34145131 MS.gene040691:CDS 45.0%
!! TTCTTCTCTCTGGTAGTGGT+GGG + chr1.2:34146061-34146080 None:intergenic 45.0%
!! TTTCTTCTCTCTGGTAGTGG+TGG + chr1.2:34146062-34146081 None:intergenic 45.0%
ACTACTGCTGCTACACCTCA+AGG - chr1.2:34144152-34144171 MS.gene040691:intron 50.0%
ATCCCAACCACAAAGGAACC+AGG - chr1.2:34145291-34145310 MS.gene040691:intron 50.0%
CCGAGCGATTCATCATTTGG+TGG - chr1.2:34143420-34143439 MS.gene040691:intron 50.0%
CGCCGAAACTGACGTTGAAA+CGG - chr1.2:34146219-34146238 MS.gene040691:CDS 50.0%
CGTTTCAACGTCAGTTTCGG+CGG + chr1.2:34146221-34146240 None:intergenic 50.0%
CTACTGCTGCTACACCTCAA+GGG - chr1.2:34144153-34144172 MS.gene040691:intron 50.0%
GACGGGTCTAACGGAATAAC+GGG + chr1.2:34146196-34146215 None:intergenic 50.0%
GAGAGAGCCGAAGGCAAAAA+TGG + chr1.2:34143591-34143610 None:intergenic 50.0%
GAGGCTAATGGAAACACAGG+AGG - chr1.2:34144515-34144534 MS.gene040691:intron 50.0%
GCAGAGGCTAATGGAAACAC+AGG - chr1.2:34144512-34144531 MS.gene040691:intron 50.0%
GCTCCGAGCGATTCATCATT+TGG - chr1.2:34143417-34143436 MS.gene040691:intron 50.0%
GTGTGTAGAGTGTGTGTTCG+TGG - chr1.2:34146466-34146485 MS.gene040691:intron 50.0%
GTTCAACGGTCGGATGTGTA+CGG - chr1.2:34145690-34145709 MS.gene040691:intron 50.0%
GTTTCAACGTCAGTTTCGGC+GGG + chr1.2:34146220-34146239 None:intergenic 50.0%
TGAGAGTAGGGGAAGGAACA+TGG - chr1.2:34147233-34147252 MS.gene040691:intron 50.0%
TTCAACGGTCGGATGTGTAC+GGG - chr1.2:34145691-34145710 MS.gene040691:intron 50.0%
! GAGCGTGGTAGTGAAGCTAA+AGG - chr1.2:34142831-34142850 MS.gene040691:CDS 50.0%
! TGCAACGCGGTGATGGTATT+TGG - chr1.2:34143853-34143872 MS.gene040691:intron 50.0%
!! GGTCTAACGGAATAACGGGT+GGG + chr1.2:34146192-34146211 None:intergenic 50.0%
!! GTATCGGCTGTTTCAGGTCA+TGG + chr1.2:34145038-34145057 None:intergenic 50.0%
AACCACAAAGGAACCAGGCC+CGG - chr1.2:34145296-34145315 MS.gene040691:intron 55.0%
AATTGGGTGCAACGCGGTGA+TGG - chr1.2:34143846-34143865 MS.gene040691:intron 55.0%
CGGTTACGTCGGATTTCGGT+CGG + chr1.2:34145658-34145677 None:intergenic 55.0%
GAACAACACGGCAATGAGCG+TGG - chr1.2:34142816-34142835 MS.gene040691:CDS 55.0%
GACGTTGAAACGGTCGGGAA+TGG - chr1.2:34146229-34146248 MS.gene040691:CDS 55.0%
GGCCTGGTTCCTTTGTGGTT+GGG + chr1.2:34145296-34145315 None:intergenic 55.0%
GTGGAGTTGAGAGTAGGGGA+AGG - chr1.2:34147226-34147245 MS.gene040691:intron 55.0%
TACAACCGAGCCAAACCACC+TGG - chr1.2:34146166-34146185 MS.gene040691:CDS 55.0%
TGACAGTAAGGGGTGAGCAC+CGG + chr1.2:34146322-34146341 None:intergenic 55.0%
TTTGCATGGTCGCTCCGATG+TGG - chr1.2:34143894-34143913 MS.gene040691:intron 55.0%
! GGGTCTAACGGAATAACGGG+TGG + chr1.2:34146193-34146212 None:intergenic 55.0%
! TGGTTTGGGACGGACGAAAG+CGG - chr1.2:34145747-34145766 MS.gene040691:intron 55.0%
ACGTCAGTTTCGGCGGGTGA+CGG + chr1.2:34146214-34146233 None:intergenic 60.0%
CCAGGCCCGGAGAAGTTTCA+AGG - chr1.2:34145309-34145328 MS.gene040691:intron 60.0%
CCTTGAAACTTCTCCGGGCC+TGG + chr1.2:34145312-34145331 None:intergenic 60.0%
GGGCCTGGTTCCTTTGTGGT+TGG + chr1.2:34145297-34145316 None:intergenic 60.0%
! GTGTTGGTGAGGACAGGGCA+TGG - chr1.2:34145118-34145137 MS.gene040691:CDS 60.0%
!! AACGGAATAACGGGTGGGCC+AGG + chr1.2:34146187-34146206 None:intergenic 60.0%
!! AGTAAGGGGTGAGCACCGGT+CGG + chr1.2:34146318-34146337 None:intergenic 60.0%
AACGGGTGGGCCAGGTGGTT+TGG + chr1.2:34146179-34146198 None:intergenic 65.0%
CGAATCCGCCCGTAACCGAC+CGG - chr1.2:34146300-34146319 MS.gene040691:CDS 65.0%
CGTCAGTTTCGGCGGGTGAC+GGG + chr1.2:34146213-34146232 None:intergenic 65.0%
CTCCGGGCCTGGTTCCTTTG+TGG + chr1.2:34145301-34145320 None:intergenic 65.0%
TCTCACACTTCACGCGCGCG+TGG + chr1.2:34145843-34145862 None:intergenic 65.0%
! CGGTCGGTTACGGGCGGATT+CGG + chr1.2:34146302-34146321 None:intergenic 65.0%
! GTGGGCCAGGTGGTTTGGCT+CGG + chr1.2:34146174-34146193 None:intergenic 65.0%
!! GGAATAACGGGTGGGCCAGG+TGG + chr1.2:34146184-34146203 None:intergenic 65.0%
!! GGGTGAGCACCGGTCGGTTA+CGG + chr1.2:34146312-34146331 None:intergenic 65.0%
!! GGTGAGCACCGGTCGGTTAC+GGG + chr1.2:34146311-34146330 None:intergenic 65.0%
!! TCGGCGGGTGACGGGTCTAA+CGG + chr1.2:34146205-34146224 None:intergenic 65.0%
!! GAGCACCGGTCGGTTACGGG+CGG + chr1.2:34146308-34146327 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 34142807 34147411 34142807 ID=MS.gene040691
chr1.2 mRNA 34142807 34147411 34142807 ID=MS.gene040691.t1;Parent=MS.gene040691
chr1.2 exon 34147313 34147411 34147313 ID=MS.gene040691.t1.exon1;Parent=MS.gene040691.t1
chr1.2 CDS 34147313 34147411 34147313 ID=cds.MS.gene040691.t1;Parent=MS.gene040691.t1
chr1.2 exon 34145988 34146462 34145988 ID=MS.gene040691.t1.exon2;Parent=MS.gene040691.t1
chr1.2 CDS 34145988 34146462 34145988 ID=cds.MS.gene040691.t1;Parent=MS.gene040691.t1
chr1.2 exon 34145554 34145702 34145554 ID=MS.gene040691.t1.exon3;Parent=MS.gene040691.t1
chr1.2 CDS 34145554 34145702 34145554 ID=cds.MS.gene040691.t1;Parent=MS.gene040691.t1
chr1.2 exon 34144888 34145167 34144888 ID=MS.gene040691.t1.exon4;Parent=MS.gene040691.t1
chr1.2 CDS 34144888 34145167 34144888 ID=cds.MS.gene040691.t1;Parent=MS.gene040691.t1
chr1.2 exon 34143286 34143399 34143286 ID=MS.gene040691.t1.exon5;Parent=MS.gene040691.t1
chr1.2 CDS 34143286 34143399 34143286 ID=cds.MS.gene040691.t1;Parent=MS.gene040691.t1
chr1.2 exon 34143133 34143191 34143133 ID=MS.gene040691.t1.exon6;Parent=MS.gene040691.t1
chr1.2 CDS 34143133 34143191 34143133 ID=cds.MS.gene040691.t1;Parent=MS.gene040691.t1
chr1.2 exon 34142807 34143049 34142807 ID=MS.gene040691.t1.exon7;Parent=MS.gene040691.t1
chr1.2 CDS 34142807 34143049 34142807 ID=cds.MS.gene040691.t1;Parent=MS.gene040691.t1
Gene Sequence

>MS.gene040691

ATGTGGTTTGAACAACACGGCAATGAGCGTGGTAGTGAAGCTAAAGGAATGCATTTCTATTTACATGTTCAACAATGCGAGCTTCAACACAAAGAACTCGTAAGCATTTTTCATACCCTATGTATAAACTAACCCATTTATGTATTAGTATCTGTAATTATTATTAATTAAGTAAGTGATTAGCGTTTTACTAGACTTTATTCTTTCTGGATTAATATGATTCTTCTACATTAATATTATGTCATTACTCATTTGTAGTAGTCAATGTACATGTTTGGCCCATTTTGGGTTCAGTTGAAAACACAGTGACCCATTTTTATTATTCAATAAACTTTGCTTCTTCTCAATACATATACATTGCTTGAAAGTTGTTAAATTCATACGTTGCTTGTTATTCACAAATGAAGAATCAAATGCTATATTTCTAATAATTTCTTTGATTCTATTGGACTTAAGAATGTGGATCTTGTATACTTGCTTCACTTTCGTGGCGTATTGAACTTGATTTTCATCACTGAATGAAGTTTGCTTCGTATTAAAAATACCCATTTTGACACTAAAAACAAACAACCCTGTACGGATTTATTATCATTAATGGAATTGGTTTTTCGCTCCGAGCGATTCATCATTTGGTGGACCTCGTTAACCACTTGTGCTCAATCACTTGGTCATACCAACTCTTTAAATAGACTGTTTAAGGTTTGTAGTCAATGTGTTTGATGAAAACCCCCAATACTGTTTTGATCATGCTTTCTGTTGCAAAATGTTTGGTATGGCAATACCATTTTTGCCTTCGGCTCTCTCTATGTGTAATATTCCCACATATCTGGTTTGCTTAGGTATTTGACCTTAGTTTTCATTATTCAATCAAGTATGCTTTGCTGCATTAATATTCAGTACTAGTTCAATCCAAATTTATACTCATTGCTTTTTGAAAATGTGCTTGCAGATGATTCCAAGGAATTTCGTAGAGAGGTATTGGAAAGATGTACCAAATCCAATATCCCTTAAACTTCCAAATGGGTCAGCATGCAAAATGAATTGGGTGCAACGCGGTGATGGTATTTGGCTTCAGAATTGGAAGAGGTTTGCATGGTCGCTCCGATGTGGAGATCTTTTAGTTTTCCAATACAAAGGAGGGTCAGATTTTCAAGTCATTATATTAGATGATAGTAAATTAGAAATTAACTATTCAAGTATGAGATGCAACAACGATCAAGAAAATACGAAAGAGAGTGATGATGACGACGACGACGATGAATATGAGTGTGTTGAGATTCCTAGTGACACTGAAAATACAAAAATTCCCCTCAAGAAAAAGAGAACCAACTCAAATGGCATTGCTACTACTGCTGCTACACCTCAAGGGACTAACATTCACAAGAGAAAAACTAATATCAATGCAACCCAGCAAAAAGTTTCGGGTAAGTTATTCTACTTCCTTTTATTTATTCATCTGTTTATGGGCAAAATATGTTTTTAATTAGTCCCTTAGTTCATCTCAAATTTTGGTTTTAGTCTTTCTTTCCACTTTTTAATCCATACAAATTACATAAGTAAGTACATGTTTTTAGTTCTGCACCCACTTTATTTACGTATATTCTTTTAAGATTAAATTAATTTTCAAGACTGTCATACAAAAAAAATCAAGACGCAAACTTTTATTTTGTACCTTTCAAATGCTGAAAAGAGTTTTTAAAGTTTTGCAGAGGCTAATGGAAACACAGGAGGCATGGGTAAGAATGCTAAAAATGCACAAAGACTAAACGAGAGAAGTTGCACAAATTCTCATCCCAATGAGAGTCCTAGTTTCACTGTCAAATTATCGCCATATCATGTTGAAGGTGATAATAGATTGGTATGTTTCCTGTACTACTTTTTCTGTAATAGTGACATTTCGTACCTAACTGTGTGAGAGGCTTTCATTTTCCTATAGGAACTGAATGTATTGAAATTACAAACAAACCCCCAAATGACTCTCTTGTTAATAGTTTTATTGAATAAACTTACTAACAGAAAACATATTCATGGTGTAATGTAAATTTATTCATTAAATTATTAACAAAAGAAAAAAGTATAGCAAACATACTAAAGACAGATTTGAAGATCAAAATAACTAGCGGAAGAGACATTTGGGCATATTTTTATAATTTTTGATACATTTAAGTACTGTTTGAATGAGCCTTGCACATTTCGTGCATGAATATATTTTAATCAATCTGTTTAAACCATGACCTGAAACAGCCGATACCTAGTTGGTTTTCGAAAGAATACATGAATGAGTTATTGCAAGGGAAGGCAACAATTAGAAGTGTTGGTGAGGACAGGGCATGGCACGTGTCACTAAACTTTCAGAAAAGCAAGAGCAGTTTTCTAATGAGGGCAGGTTGGAAGTCATTTTCAAAGGAACATGAGTTGAAAGTTGGTGATGTATGTAAATTTGAGATGACTCAACGCGAACCACTTTCATTCACAATTACTATTATCCCAACCACAAAGGAACCAGGCCCGGAGAAGTTTCAAGGTATTGCTTTTATTATTGTTGTTTTTGAAATGATACATATTTTATTATCTTCTGATTTTGATTTTGATACATTTGATCAATGTTAAAAGTTTTAATTTGCCAACAAACTACAATCAATCAAATGTGTAAAATATTTTAAGGTTTAAATCTTGGACATCATGTTGTGTAGTAGAACGAATATTTCACTTTGTTTTAAGATTACTAGATCAAAAAGAAGAACTTTTCTGATGAACTTCAGCTAGTCCCCCTAAGCTCTATTTTATTGCGTTGGTTAAATACACATGTTAATGTTACTGTCATTAGGGCTAAGCAAGAATTTGTCATCCGACCGAAATCCGACGTAACCGTAACAAATACTTGTTCAACGGTCGGATGTGTACGGGCTTCAGAAAGAAGTGAGACAAATCAGTTTCACATGGTTTGGGACGGACGAAAGCGGTTCTGTCAAAATGGAATGAGCGGTGTCCGAACCCGTCCACTTATTAGTGTTGTTTGTGTCTCTGTAGAAGCCACGCGCGCGTGAAGTGTGAGACTATCTCAAGTCTTGAAAATTCAACAACCTACACACTGTTCAATGTATGTGTGCCATCAAACAGGGTGTGTCTTGACTTTTCAATTGTCATGTTTACCTTTTTTGGATTTTCATATCTCATGTACTCCATTAAAATAAACTTCTTTCTCTTACCTTAATTTATTTATTACAAACAAGCAAGAATATGATATTGAGCCCACCACTACCAGAGAGAAGAAACAAGAACAGGGAATGAACACGAAGCACATGAGATGAGAGATATACAGAGAGGAGAAGAACATTTTCGCAGATGAAAGCTAGAGATACAACCGAGCCAAACCACCTGGCCCACCCGTTATTCCGTTAGACCCGTCACCCGCCGAAACTGACGTTGAAACGGTCGGGAATGGTTCACTTTTTCTGATCTACGGGTGTTCTTTGGTGAGCAGTTGTTGGGCCGAATCCGCCCGTAACCGACCGGTGCTCACCCCTTACTGTCATAAAACCTCGTGATGAAGGATAATGGTGGGTTGTGGGTAGTGTAAATTGTGGTGACCAATAACTGTAAAATAAAATAGAAAAAATGACTGATGTGGACCAATAGATGATAGTGTGTTTAAGGGAGTGTGTAGAGTGTGTGTTCGTGGCATTTCTATAGAGTATTTGATTTTAGTCATTCTAATAATGGCTACATAAAAACTAAGATAAATACTGTACACATATATATTACATGATTAATTCTAAAATATACAAATTTTTCAAGGACTAATACTAAACTATGATCGAAAGTGATATATTTACTAAGATTAATTTTTATACATGGATTAGAAGCTAAAAGTGATATATCTGCGAGGACAAAAAAACATATTTAAACTAAGTTGTAATGATCTTATGATTATAATTGATTTGCACATAGCATTAGTAGATTTTCCCCAACTTCTTCAGTAGATCCCTGAGAAGTTTGTGGACATGTGCAGAAAACCAAGGAGTCCAAGAAAAATCAGAGACAACACCAGTAAAAGATATGGAATATGCGGGCAATTTTGGAGATGGAATTTCAAGGAGCTGCACAAAAACACATTGTTTTAGGGGTATTCATCTTAATTTTTGTTTTCGTGTTTTTTGTGTACAATTCATGCAAATCTCCTTAAACTATGTTGTTTTCTTTGTTGTTAATTACTGCAGATTCTGTAAGTCTGAATTTACATGAGATGTTTAAGGTTTTTATAACATCATCAGACAAGGTATGAATTACGTAAAATGCTGTTACCATGTATATAGCTATGTGTGTGAATGTATAAAATTTAATTTGTTCATATATATGCAGTTGGTTGTACTACCAAGTGAGCTGTTGAAGAAGCATGGTATATTTAGTGGAAATTCAGTGGAGTTGAGAGTAGGGGAAGGAACATGGTTTGTAGATGTGAGTTATAATGAACATCTCGACTATGGTTGGTTCACTAAAGGTTGGCAAGAATTTGTGAGAGATTGCAAAGTAAAGACTGGAGACACTTGCTTGTTTGAGGTGATTGATGTGCAAAATCATGTGTTCAAGGTTTCAATTGTTTGA
Protein sequence

>MS.gene040691.t1

MWFEQHGNERGSEAKGMHFYLHVQQCELQHKELMIPRNFVERYWKDVPNPISLKLPNGSACKMNWVQRGDGIWLQNWKRFAWSLRCGDLLVFQYKGGSDFQVIILDDSKLEINYSSMRCNNDQENTKESDDDDDDDEYECVEIPSDTENTKIPLKKKRTNSNGIATTAATPQGTNIHKRKTNINATQQKVSEANGNTGGMGKNAKNAQRLNERSCTNSHPNESPSFTVKLSPYHVEGDNRLPIPSWFSKEYMNELLQGKATIRSVGEDRAWHVSLNFQKSKSSFLMRAGWKSFSKEHELKVGDVCKFEMTQREPLSFTITIIPTTKEPGPEKFQENQGVQEKSETTPVKDMEYAGNFGDGISRSCTKTHCFRDSVSLNLHEMFKVFITSSDKLVVLPSELLKKHGIFSGNSVELRVGEGTWFVDVSYNEHLDYGWFTKGWQEFVRDCKVKTGDTCLFEVIDVQNHVFKVSIV