Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052846.t1 | XP_024630388.1 | 89.6 | 385 | 39 | 1 | 1 | 385 | 1 | 384 | 6.30E-180 | 640.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052846.t1 | Q8L3W1 | 25.2 | 333 | 183 | 11 | 7 | 276 | 4 | 333 | 1.2e-14 | 82.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052846.t1 | A0A072VFJ7 | 83.1 | 397 | 59 | 3 | 1 | 389 | 1 | 397 | 1.0e-168 | 602.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene052846.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052846.t1 | MTR_1g035570 | 80.101 | 397 | 71 | 3 | 1 | 389 | 1 | 397 | 0.0 | 624 |
| MS.gene052846.t1 | MTR_1g035490 | 67.500 | 320 | 60 | 6 | 112 | 390 | 16 | 332 | 1.16e-131 | 381 |
| MS.gene052846.t1 | MTR_1g035640 | 53.333 | 345 | 126 | 4 | 1 | 325 | 1 | 330 | 3.17e-116 | 346 |
| MS.gene052846.t1 | MTR_1g035640 | 37.405 | 131 | 47 | 4 | 261 | 387 | 366 | 465 | 9.23e-15 | 75.9 |
| MS.gene052846.t1 | MTR_1g035620 | 43.897 | 426 | 190 | 13 | 1 | 390 | 1 | 413 | 3.17e-101 | 306 |
| MS.gene052846.t1 | MTR_1g050845 | 42.674 | 389 | 156 | 12 | 1 | 350 | 1 | 361 | 8.86e-79 | 259 |
| MS.gene052846.t1 | MTR_6g061070 | 32.675 | 456 | 212 | 11 | 14 | 386 | 27 | 470 | 5.13e-64 | 212 |
| MS.gene052846.t1 | MTR_1g035650 | 42.925 | 212 | 99 | 3 | 1 | 199 | 1 | 203 | 2.64e-46 | 158 |
| MS.gene052846.t1 | MTR_5g044670 | 28.523 | 298 | 186 | 5 | 14 | 291 | 25 | 315 | 1.42e-33 | 128 |
| MS.gene052846.t1 | MTR_7g050560 | 33.455 | 275 | 164 | 7 | 14 | 277 | 22 | 288 | 3.42e-33 | 126 |
| MS.gene052846.t1 | MTR_7g050710 | 31.000 | 300 | 171 | 8 | 8 | 277 | 12 | 305 | 3.64e-33 | 126 |
| MS.gene052846.t1 | MTR_3g098790 | 32.509 | 283 | 165 | 9 | 14 | 277 | 22 | 297 | 8.34e-33 | 125 |
| MS.gene052846.t1 | MTR_7g050590 | 32.632 | 285 | 156 | 10 | 21 | 277 | 2 | 278 | 5.88e-31 | 120 |
| MS.gene052846.t1 | MTR_3g061350 | 29.893 | 281 | 176 | 10 | 9 | 277 | 12 | 283 | 3.12e-30 | 117 |
| MS.gene052846.t1 | MTR_8g103940 | 28.571 | 308 | 177 | 11 | 14 | 290 | 48 | 343 | 7.38e-30 | 120 |
| MS.gene052846.t1 | MTR_7g050580 | 33.818 | 275 | 163 | 8 | 14 | 277 | 22 | 288 | 1.62e-29 | 116 |
| MS.gene052846.t1 | MTR_3g061310 | 27.915 | 283 | 180 | 7 | 9 | 277 | 12 | 284 | 3.84e-29 | 114 |
| MS.gene052846.t1 | MTR_1g035480 | 42.667 | 150 | 67 | 4 | 14 | 159 | 26 | 160 | 4.71e-29 | 111 |
| MS.gene052846.t1 | MTR_1g108780 | 29.508 | 305 | 178 | 9 | 20 | 296 | 12 | 307 | 2.11e-28 | 116 |
| MS.gene052846.t1 | MTR_3g061320 | 26.855 | 283 | 177 | 8 | 9 | 277 | 12 | 278 | 1.86e-27 | 110 |
| MS.gene052846.t1 | MTR_3g061340 | 29.137 | 278 | 172 | 11 | 9 | 277 | 12 | 273 | 7.83e-27 | 108 |
| MS.gene052846.t1 | MTR_7g050720 | 31.338 | 284 | 161 | 8 | 14 | 265 | 19 | 300 | 1.46e-26 | 108 |
| MS.gene052846.t1 | MTR_1g033740 | 39.041 | 146 | 80 | 3 | 14 | 159 | 31 | 167 | 3.07e-26 | 104 |
| MS.gene052846.t1 | MTR_3g061370 | 28.114 | 281 | 181 | 10 | 9 | 277 | 9 | 280 | 1.46e-25 | 105 |
| MS.gene052846.t1 | MTR_1g035510 | 47.170 | 106 | 53 | 2 | 21 | 126 | 2 | 104 | 2.16e-24 | 100 |
| MS.gene052846.t1 | MTR_1g035500 | 39.333 | 150 | 86 | 3 | 14 | 160 | 34 | 181 | 2.37e-24 | 99.4 |
| MS.gene052846.t1 | MTR_4g119990 | 28.188 | 298 | 183 | 10 | 9 | 277 | 15 | 310 | 2.61e-24 | 103 |
| MS.gene052846.t1 | MTR_1g035470 | 42.453 | 106 | 59 | 2 | 21 | 126 | 2 | 105 | 4.53e-22 | 91.7 |
| MS.gene052846.t1 | MTR_6g043890 | 28.044 | 271 | 175 | 8 | 13 | 265 | 23 | 291 | 1.22e-21 | 95.1 |
| MS.gene052846.t1 | MTR_1g035520 | 27.303 | 304 | 165 | 7 | 21 | 277 | 88 | 382 | 1.31e-21 | 95.9 |
| MS.gene052846.t1 | MTR_1g035520 | 40.860 | 93 | 51 | 2 | 298 | 386 | 291 | 383 | 3.56e-14 | 73.9 |
| MS.gene052846.t1 | MTR_3g061330 | 30.000 | 210 | 125 | 7 | 9 | 205 | 12 | 212 | 1.43e-20 | 90.5 |
| MS.gene052846.t1 | MTR_1g035460 | 22.414 | 290 | 186 | 4 | 21 | 277 | 2 | 285 | 1.03e-19 | 90.5 |
| MS.gene052846.t1 | MTR_3g061290 | 37.815 | 119 | 68 | 3 | 9 | 123 | 12 | 128 | 1.24e-19 | 86.7 |
| MS.gene052846.t1 | MTR_3g005480 | 24.727 | 275 | 150 | 8 | 14 | 277 | 30 | 258 | 2.29e-15 | 75.9 |
| MS.gene052846.t1 | MTR_7g050640 | 42.342 | 111 | 54 | 4 | 3 | 103 | 5 | 115 | 8.35e-14 | 67.8 |
| MS.gene052846.t1 | MTR_4g068320 | 30.636 | 173 | 102 | 5 | 7 | 171 | 4 | 166 | 1.80e-13 | 72.0 |
| MS.gene052846.t1 | MTR_3g061220 | 31.897 | 116 | 66 | 3 | 9 | 122 | 12 | 116 | 1.83e-12 | 63.9 |
| MS.gene052846.t1 | MTR_1g034240 | 34.234 | 111 | 66 | 3 | 7 | 110 | 5 | 115 | 2.34e-12 | 68.6 |
| MS.gene052846.t1 | MTR_3g005490 | 22.744 | 277 | 162 | 8 | 14 | 282 | 30 | 262 | 6.00e-12 | 65.9 |
| MS.gene052846.t1 | MTR_1g035540 | 46.032 | 63 | 34 | 0 | 245 | 307 | 32 | 94 | 7.34e-12 | 62.8 |
| MS.gene052846.t1 | MTR_3g005460 | 23.022 | 278 | 167 | 8 | 14 | 277 | 271 | 515 | 4.75e-11 | 64.7 |
| MS.gene052846.t1 | MTR_5g070440 | 21.324 | 272 | 177 | 7 | 14 | 280 | 30 | 269 | 7.32e-11 | 62.8 |
| MS.gene052846.t1 | MTR_1g035440 | 35.165 | 91 | 56 | 2 | 14 | 101 | 24 | 114 | 9.53e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052846.t1 | AT3G18990 | 24.625 | 333 | 185 | 9 | 7 | 276 | 4 | 333 | 2.21e-19 | 89.0 |
| MS.gene052846.t1 | AT3G18990 | 24.625 | 333 | 185 | 9 | 7 | 276 | 4 | 333 | 2.48e-19 | 89.0 |
Find 71 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGGGATTGCTTCGTTTC+CGG | 0.173590 | 1.4:+20392014 | None:intergenic |
| TTGTTTGATGTTTCAATTAT+AGG | 0.194875 | 1.4:-20391207 | MS.gene052846:CDS |
| TTTGCAAAGCCTTTCAAATA+TGG | 0.200041 | 1.4:-20393062 | MS.gene052846:CDS |
| TTAATACCTTGTAGTTTCTT+TGG | 0.226171 | 1.4:+20391997 | None:intergenic |
| ACCAAAGGAGTTTATGAAAA+AGG | 0.244641 | 1.4:-20391409 | MS.gene052846:CDS |
| ATTGTCCTTTGAGCTTTCTT+TGG | 0.254871 | 1.4:+20392828 | None:intergenic |
| AAATATTGTGGAGTTGAAAA+TGG | 0.256652 | 1.4:-20391376 | MS.gene052846:CDS |
| TTCATCAACTGATTTGATAT+TGG | 0.261684 | 1.4:+20392956 | None:intergenic |
| ACAAATATGTGGAGAAATAT+TGG | 0.262291 | 1.4:-20393193 | MS.gene052846:CDS |
| GTGGTGGTTGGAAAATATTC+AGG | 0.274486 | 1.4:-20392125 | MS.gene052846:CDS |
| GCATAACACATTCAAGGTTT+TGG | 0.294441 | 1.4:-20391548 | MS.gene052846:CDS |
| AAAGCTCAAAGGACAATAAA+TGG | 0.303877 | 1.4:-20392822 | MS.gene052846:CDS |
| TTACACCAATGGCTATTTCT+TGG | 0.306445 | 1.4:-20392351 | MS.gene052846:intron |
| TTTGGAAACTTAAGGAATAT+AGG | 0.310007 | 1.4:+20393155 | None:intergenic |
| CTCTTAACTTTCAAATTCAT+TGG | 0.314459 | 1.4:-20393035 | MS.gene052846:CDS |
| TTAATGGAACTGCAACAATA+AGG | 0.327052 | 1.4:-20392215 | MS.gene052846:CDS |
| TATTTCTCCACATATTTGTT+TGG | 0.329296 | 1.4:+20393197 | None:intergenic |
| TAATACCTTGTAGTTTCTTT+GGG | 0.332861 | 1.4:+20391998 | None:intergenic |
| TTGGAAACTTAAGGAATATA+GGG | 0.346499 | 1.4:+20393156 | None:intergenic |
| CAACACCGTTTGGAAACTTA+AGG | 0.350789 | 1.4:+20393147 | None:intergenic |
| CATTAACAGCTTCAGATGTT+TGG | 0.351304 | 1.4:+20392408 | None:intergenic |
| GAGGTTAGTTTGAGGTATTA+TGG | 0.363534 | 1.4:-20392171 | MS.gene052846:CDS |
| AATATTATTCTATGAAAATC+TGG | 0.366274 | 1.4:+20393344 | None:intergenic |
| ATAGTGACAGTGAATGAAAA+AGG | 0.401426 | 1.4:+20392045 | None:intergenic |
| ATAGTTTATTTCTAAAGTAT+TGG | 0.406626 | 1.4:+20392980 | None:intergenic |
| TGGAGAGTAATGGTGATATA+TGG | 0.431889 | 1.4:-20393106 | MS.gene052846:CDS |
| AGTATTCGTGGCTGCAGGTT+CGG | 0.433843 | 1.4:-20391315 | MS.gene052846:CDS |
| AAAGCATGCAGAGTGGAGAT+TGG | 0.451382 | 1.4:-20391270 | MS.gene052846:CDS |
| CAAAGTGGCCATGGTGAAGA+AGG | 0.465563 | 1.4:-20392441 | MS.gene052846:CDS |
| TGTCATTATAACTTCAAAAG+AGG | 0.475259 | 1.4:+20392379 | None:intergenic |
| TTAACTTTCAAATTCATTGG+TGG | 0.475675 | 1.4:-20393032 | MS.gene052846:CDS |
| GGTGCTGAAGCCACTGAAGA+AGG | 0.489506 | 1.4:-20392933 | MS.gene052846:CDS |
| GATGAAGCATAACACATTCA+AGG | 0.490908 | 1.4:-20391554 | MS.gene052846:CDS |
| AATATTGTGGAGTTGAAAAT+GGG | 0.495187 | 1.4:-20391375 | MS.gene052846:CDS |
| ATGAAAGTATTCGTGGCTGC+AGG | 0.495909 | 1.4:-20391320 | MS.gene052846:CDS |
| GCTGCAGGTTCGGTAAAGAT+TGG | 0.496239 | 1.4:-20391305 | MS.gene052846:CDS |
| TACTGTACAGAAGGTCATGA+TGG | 0.501012 | 1.4:-20391577 | MS.gene052846:intron |
| GTCATTATAACTTCAAAAGA+GGG | 0.507540 | 1.4:+20392380 | None:intergenic |
| GGGATATCATGAAAATATTG+TGG | 0.510552 | 1.4:-20391388 | MS.gene052846:CDS |
| AAAGAAAGATCTTGTTTGAG+TGG | 0.511955 | 1.4:-20392144 | MS.gene052846:CDS |
| GGAGTGTGGAGGTTAGTTTG+AGG | 0.513468 | 1.4:-20392179 | MS.gene052846:CDS |
| ACTTTCTTTACCTTCTTCAG+TGG | 0.514754 | 1.4:+20392923 | None:intergenic |
| AAGAGATATCCATATTTGAA+AGG | 0.520085 | 1.4:+20393053 | None:intergenic |
| ATATTCCTTAAGTTTCCAAA+CGG | 0.523936 | 1.4:-20393152 | MS.gene052846:CDS |
| AATTATTATGAAAGTATTCG+TGG | 0.525033 | 1.4:-20391327 | MS.gene052846:CDS |
| GATCTTGTTTGAGTGGTGGT+TGG | 0.533761 | 1.4:-20392137 | MS.gene052846:CDS |
| AATGGCAAGAGAAAATTCTC+AGG | 0.536390 | 1.4:-20392804 | MS.gene052846:intron |
| AATATCAAATCAGTTGATGA+AGG | 0.540855 | 1.4:-20392954 | MS.gene052846:CDS |
| GGAACTGCAACAATAAGGAT+TGG | 0.545715 | 1.4:-20392210 | MS.gene052846:CDS |
| CAATAAGGATTGGTAATGAA+AGG | 0.554265 | 1.4:-20392200 | MS.gene052846:CDS |
| GTAAATTTGAGATGATTCGA+CGG | 0.557247 | 1.4:-20392071 | MS.gene052846:CDS |
| GTATTTGCAGAGTGTACCAA+AGG | 0.570521 | 1.4:-20391424 | MS.gene052846:intron |
| TGGTGGTTGGAAAATATTCA+GGG | 0.571283 | 1.4:-20392124 | MS.gene052846:CDS |
| TTTGGTGAAGAACACAGCCC+CGG | 0.573521 | 1.4:-20391530 | MS.gene052846:intron |
| GAGGGTTCCAAACAAATATG+TGG | 0.582236 | 1.4:-20393204 | MS.gene052846:CDS |
| ACTTACCAAGAAATAGCCAT+TGG | 0.587587 | 1.4:+20392346 | None:intergenic |
| TGAAAATGGGAAGAAAGTCA+TGG | 0.592127 | 1.4:-20391362 | MS.gene052846:CDS |
| GATTGGTAATGAAAGGAGTG+TGG | 0.593114 | 1.4:-20392193 | MS.gene052846:CDS |
| ACTGTCACTATTACTCATGC+CGG | 0.593593 | 1.4:-20392033 | MS.gene052846:CDS |
| AGGTTGTAACAAAGTGGCCA+TGG | 0.594476 | 1.4:-20392450 | MS.gene052846:CDS |
| GCAATCCCAAAGAAACTACA+AGG | 0.598347 | 1.4:-20392003 | MS.gene052846:intron |
| CTTTACAGGTTGTAACAAAG+TGG | 0.599398 | 1.4:-20392456 | MS.gene052846:intron |
| TGGTAATGAAAGGAGTGTGG+AGG | 0.599510 | 1.4:-20392190 | MS.gene052846:CDS |
| ATGACACAATCTTACACCAA+TGG | 0.609025 | 1.4:-20392362 | MS.gene052846:CDS |
| GAAAGATCTTGTTTGAGTGG+TGG | 0.614967 | 1.4:-20392141 | MS.gene052846:CDS |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1.4:-20393188 | MS.gene052846:CDS |
| AAGTGATGAAGAGAGTGATG+AGG | 0.629681 | 1.4:-20392859 | MS.gene052846:CDS |
| TGTTCTCTTGAAAACTCACA+TGG | 0.651484 | 1.4:+20392249 | None:intergenic |
| AAATGCCAAAGAAAGCTCAA+AGG | 0.663329 | 1.4:-20392833 | MS.gene052846:CDS |
| ACTGTACAGAAGGTCATGAT+GGG | 0.685690 | 1.4:-20391576 | MS.gene052846:intron |
| ATTTATGAAAGCATGCAGAG+TGG | 0.691626 | 1.4:-20391277 | MS.gene052846:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATTTATGATAAAAAATT+TGG | - | chr1.4:20391991-20392010 | MS.gene052846:intron | 10.0% |
| !! | CATATAATATATAGTTAATT+AGG | + | chr1.4:20392854-20392873 | None:intergenic | 10.0% |
| !!! | AATTAAAAAAGTTTTCAATT+TGG | - | chr1.4:20392726-20392745 | MS.gene052846:intron | 10.0% |
| !!! | ATGAATAATTTATAAGTTTT+TGG | - | chr1.4:20392760-20392779 | MS.gene052846:intron | 10.0% |
| !!! | CAAAAATATGTTTTTTTTTA+TGG | - | chr1.4:20391947-20391966 | MS.gene052846:intron | 10.0% |
| !!! | TATAGATTTTATTATTGTAA+AGG | - | chr1.4:20392666-20392685 | MS.gene052846:intron | 10.0% |
| !! | AATATTATTCTATGAAAATC+TGG | + | chr1.4:20391215-20391234 | None:intergenic | 15.0% |
| !! | ATTATATCTTTAAACTTTAC+AGG | - | chr1.4:20392086-20392105 | MS.gene052846:CDS | 15.0% |
| !!! | AATATGTTTTTTTTTATGGA+AGG | - | chr1.4:20391951-20391970 | MS.gene052846:intron | 15.0% |
| !!! | AGTTTTTAATAGTTAGTAAT+TGG | - | chr1.4:20392787-20392806 | MS.gene052846:intron | 15.0% |
| !!! | ATAGTTTATTTCTAAAGTAT+TGG | + | chr1.4:20391579-20391598 | None:intergenic | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | - | chr1.4:20391551-20391570 | MS.gene052846:CDS | 15.0% |
| !!! | TCAAATATCTCTAAATTTTT+GGG | - | chr1.4:20392914-20392933 | MS.gene052846:CDS | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | - | chr1.4:20391427-20391446 | MS.gene052846:intron | 15.0% |
| !!! | TTCAAATATCTCTAAATTTT+TGG | - | chr1.4:20392913-20392932 | MS.gene052846:CDS | 15.0% |
| !! | AGAAATCATACATTAACAAT+AGG | + | chr1.4:20391316-20391335 | None:intergenic | 20.0% |
| !! | ATATATGGTTTCAGAAAAAT+TGG | - | chr1.4:20391465-20391484 | MS.gene052846:intron | 20.0% |
| !! | GAAATCATACATTAACAATA+GGG | + | chr1.4:20391315-20391334 | None:intergenic | 20.0% |
| !! | TATATGGTTTCAGAAAAATT+GGG | - | chr1.4:20391466-20391485 | MS.gene052846:intron | 20.0% |
| !! | TTGTTTGATGTTTCAATTAT+AGG | - | chr1.4:20393349-20393368 | MS.gene052846:CDS | 20.0% |
| !!! | AATTATTATGAAAGTATTCG+TGG | - | chr1.4:20393229-20393248 | MS.gene052846:intron | 20.0% |
| !!! | CAAATATCTCTAAATTTTTG+GGG | - | chr1.4:20392915-20392934 | MS.gene052846:CDS | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | - | chr1.4:20391426-20391445 | MS.gene052846:intron | 20.0% |
| !!! | TAAATCATTATTTGAAACAG+TGG | - | chr1.4:20392281-20392300 | MS.gene052846:intron | 20.0% |
| !!! | TTTTATACAATTAATCCTAC+CGG | + | chr1.4:20393048-20393067 | None:intergenic | 20.0% |
| ! | AAATATTGTGGAGTTGAAAA+TGG | - | chr1.4:20393180-20393199 | MS.gene052846:CDS | 25.0% |
| ! | AAGAGATATCCATATTTGAA+AGG | + | chr1.4:20391506-20391525 | None:intergenic | 25.0% |
| ! | AATATTGTGGAGTTGAAAAT+GGG | - | chr1.4:20393181-20393200 | MS.gene052846:CDS | 25.0% |
| ! | AATTGAATCCAAGATAAGTT+AGG | + | chr1.4:20392813-20392832 | None:intergenic | 25.0% |
| ! | ACAAATATGTGGAGAAATAT+TGG | - | chr1.4:20391363-20391382 | MS.gene052846:CDS | 25.0% |
| ! | ATATTCCTTAAGTTTCCAAA+CGG | - | chr1.4:20391404-20391423 | MS.gene052846:CDS | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | - | chr1.4:20391521-20391540 | MS.gene052846:intron | 25.0% |
| ! | GTCATTATAACTTCAAAAGA+GGG | + | chr1.4:20392179-20392198 | None:intergenic | 25.0% |
| ! | TAATACCTTGTAGTTTCTTT+GGG | + | chr1.4:20392561-20392580 | None:intergenic | 25.0% |
| ! | TATTTCTCCACATATTTGTT+TGG | + | chr1.4:20391362-20391381 | None:intergenic | 25.0% |
| ! | TGTCATTATAACTTCAAAAG+AGG | + | chr1.4:20392180-20392199 | None:intergenic | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | - | chr1.4:20391524-20391543 | MS.gene052846:intron | 25.0% |
| ! | TTAATACCTTGTAGTTTCTT+TGG | + | chr1.4:20392562-20392581 | None:intergenic | 25.0% |
| ! | TTGGAAACTTAAGGAATATA+GGG | + | chr1.4:20391403-20391422 | None:intergenic | 25.0% |
| ! | TTTATACAATTAATCCTACC+GGG | + | chr1.4:20393047-20393066 | None:intergenic | 25.0% |
| ! | TTTGGAAACTTAAGGAATAT+AGG | + | chr1.4:20391404-20391423 | None:intergenic | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+TGG | - | chr1.4:20392325-20392344 | MS.gene052846:intron | 25.0% |
| !!! | AACTTTTAAGAGTTATTCCA+TGG | - | chr1.4:20391828-20391847 | MS.gene052846:intron | 25.0% |
| !!! | AATATCAAATCAGTTGATGA+AGG | - | chr1.4:20391602-20391621 | MS.gene052846:intron | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | - | chr1.4:20391430-20391449 | MS.gene052846:intron | 25.0% |
| !!! | TTCATCAACTGATTTGATAT+TGG | + | chr1.4:20391603-20391622 | None:intergenic | 25.0% |
| AAAGCTCAAAGGACAATAAA+TGG | - | chr1.4:20391734-20391753 | MS.gene052846:intron | 30.0% | |
| ACATTAACAATAGGGTTTAC+AGG | + | chr1.4:20391307-20391326 | None:intergenic | 30.0% | |
| ACCAAAGGAGTTTATGAAAA+AGG | - | chr1.4:20393147-20393166 | MS.gene052846:CDS | 30.0% | |
| ATAGTGACAGTGAATGAAAA+AGG | + | chr1.4:20392514-20392533 | None:intergenic | 30.0% | |
| CCAAAGGAGTTTATGAAAAA+GGG | - | chr1.4:20393148-20393167 | MS.gene052846:CDS | 30.0% | |
| GAAAAAATCACAACAAACCA+TGG | + | chr1.4:20391848-20391867 | None:intergenic | 30.0% | |
| GGGATATCATGAAAATATTG+TGG | - | chr1.4:20393168-20393187 | MS.gene052846:CDS | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | - | chr1.4:20391368-20391387 | MS.gene052846:CDS | 30.0% | |
| TCTGAAAGCTTGTAAATCTA+AGG | - | chr1.4:20391868-20391887 | MS.gene052846:intron | 30.0% | |
| TTAATGGAACTGCAACAATA+AGG | - | chr1.4:20392341-20392360 | MS.gene052846:intron | 30.0% | |
| TTATACAATTAATCCTACCG+GGG | + | chr1.4:20393046-20393065 | None:intergenic | 30.0% | |
| TTTGCAAAGCCTTTCAAATA+TGG | - | chr1.4:20391494-20391513 | MS.gene052846:intron | 30.0% | |
| ! | AAAGAAAGATCTTGTTTGAG+TGG | - | chr1.4:20392412-20392431 | MS.gene052846:CDS | 30.0% |
| ! | ACTTTCTTCATCTTCTTTTG+TGG | + | chr1.4:20391681-20391700 | None:intergenic | 30.0% |
| ! | GTAAATTTGAGATGATTCGA+CGG | - | chr1.4:20392485-20392504 | MS.gene052846:intron | 30.0% |
| !! | CAATAAGGATTGGTAATGAA+AGG | - | chr1.4:20392356-20392375 | MS.gene052846:CDS | 30.0% |
| !! | CATTGGTGGATCATATTTTA+AGG | - | chr1.4:20391538-20391557 | MS.gene052846:CDS | 30.0% |
| !!! | ATTTTTTGTTCAACACCGTT+TGG | + | chr1.4:20391422-20391441 | None:intergenic | 30.0% |
| AAATGCCAAAGAAAGCTCAA+AGG | - | chr1.4:20391723-20391742 | MS.gene052846:intron | 35.0% | |
| AATGGCAAGAGAAAATTCTC+AGG | - | chr1.4:20391752-20391771 | MS.gene052846:intron | 35.0% | |
| ACTTACCAAGAAATAGCCAT+TGG | + | chr1.4:20392213-20392232 | None:intergenic | 35.0% | |
| ACTTTCTTTACCTTCTTCAG+TGG | + | chr1.4:20391636-20391655 | None:intergenic | 35.0% | |
| AGTGTCTTGAAAATCGTGTT+TGG | - | chr1.4:20391900-20391919 | MS.gene052846:intron | 35.0% | |
| ATGACACAATCTTACACCAA+TGG | - | chr1.4:20392194-20392213 | MS.gene052846:CDS | 35.0% | |
| ATTGTCCTTTGAGCTTTCTT+TGG | + | chr1.4:20391731-20391750 | None:intergenic | 35.0% | |
| CATTAACAGCTTCAGATGTT+TGG | + | chr1.4:20392151-20392170 | None:intergenic | 35.0% | |
| CTTTACAGGTTGTAACAAAG+TGG | - | chr1.4:20392100-20392119 | MS.gene052846:CDS | 35.0% | |
| GAAAATTCTCAGGTGAGTTT+AGG | - | chr1.4:20391762-20391781 | MS.gene052846:intron | 35.0% | |
| GATGAAGCATAACACATTCA+AGG | - | chr1.4:20393002-20393021 | MS.gene052846:CDS | 35.0% | |
| TGAAAATGGGAAGAAAGTCA+TGG | - | chr1.4:20393194-20393213 | MS.gene052846:CDS | 35.0% | |
| TGGAGAGTAATGGTGATATA+TGG | - | chr1.4:20391450-20391469 | MS.gene052846:intron | 35.0% | |
| TGGTGGTTGGAAAATATTCA+GGG | - | chr1.4:20392432-20392451 | MS.gene052846:CDS | 35.0% | |
| TGTTCTCTTGAAAACTCACA+TGG | + | chr1.4:20392310-20392329 | None:intergenic | 35.0% | |
| TTATGCTTGTACTGTACAGA+AGG | - | chr1.4:20392970-20392989 | MS.gene052846:CDS | 35.0% | |
| ! | ATTTATGAAAGCATGCAGAG+TGG | - | chr1.4:20393279-20393298 | MS.gene052846:intron | 35.0% |
| ! | CTGATTTTCTTTGTTGCAGA+GGG | - | chr1.4:20391334-20391353 | MS.gene052846:CDS | 35.0% |
| ! | GCATAACACATTCAAGGTTT+TGG | - | chr1.4:20393008-20393027 | MS.gene052846:CDS | 35.0% |
| ! | GTAATTGGCCTAACTTATCT+TGG | - | chr1.4:20392802-20392821 | MS.gene052846:intron | 35.0% |
| ! | TCTGATTTTCTTTGTTGCAG+AGG | - | chr1.4:20391333-20391352 | MS.gene052846:CDS | 35.0% |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | - | chr1.4:20391440-20391459 | MS.gene052846:intron | 35.0% |
| !! | CCCTTTTTCATAAACTCCTT+TGG | + | chr1.4:20393151-20393170 | None:intergenic | 35.0% |
| !! | GAGGTTAGTTTGAGGTATTA+TGG | - | chr1.4:20392385-20392404 | MS.gene052846:CDS | 35.0% |
| !! | TTACACCAATGGCTATTTCT+TGG | - | chr1.4:20392205-20392224 | MS.gene052846:CDS | 35.0% |
| AAGTGATGAAGAGAGTGATG+AGG | - | chr1.4:20391697-20391716 | MS.gene052846:intron | 40.0% | |
| ACTGTACAGAAGGTCATGAT+GGG | - | chr1.4:20392980-20392999 | MS.gene052846:CDS | 40.0% | |
| ACTGTCACTATTACTCATGC+CGG | - | chr1.4:20392523-20392542 | MS.gene052846:intron | 40.0% | |
| CAACACCGTTTGGAAACTTA+AGG | + | chr1.4:20391412-20391431 | None:intergenic | 40.0% | |
| GAGGGTTCCAAACAAATATG+TGG | - | chr1.4:20391352-20391371 | MS.gene052846:CDS | 40.0% | |
| GCAATCCCAAAGAAACTACA+AGG | - | chr1.4:20392553-20392572 | MS.gene052846:intron | 40.0% | |
| GGAACTGCAACAATAAGGAT+TGG | - | chr1.4:20392346-20392365 | MS.gene052846:intron | 40.0% | |
| GTATTTGCAGAGTGTACCAA+AGG | - | chr1.4:20393132-20393151 | MS.gene052846:CDS | 40.0% | |
| GTGGTGGTTGGAAAATATTC+AGG | - | chr1.4:20392431-20392450 | MS.gene052846:CDS | 40.0% | |
| TACTGTACAGAAGGTCATGA+TGG | - | chr1.4:20392979-20392998 | MS.gene052846:CDS | 40.0% | |
| ! | GAAAGATCTTGTTTGAGTGG+TGG | - | chr1.4:20392415-20392434 | MS.gene052846:CDS | 40.0% |
| !! | GATTGGTAATGAAAGGAGTG+TGG | - | chr1.4:20392363-20392382 | MS.gene052846:CDS | 40.0% |
| !! | TTTTCTAGCCTTCTTCACCA+TGG | + | chr1.4:20392126-20392145 | None:intergenic | 40.0% |
| AAAGCATGCAGAGTGGAGAT+TGG | - | chr1.4:20393286-20393305 | MS.gene052846:intron | 45.0% | |
| AGGTTGTAACAAAGTGGCCA+TGG | - | chr1.4:20392106-20392125 | MS.gene052846:CDS | 45.0% | |
| ! | GATCTTGTTTGAGTGGTGGT+TGG | - | chr1.4:20392419-20392438 | MS.gene052846:CDS | 45.0% |
| ! | TGGTAATGAAAGGAGTGTGG+AGG | - | chr1.4:20392366-20392385 | MS.gene052846:CDS | 45.0% |
| !! | ATGAAAGTATTCGTGGCTGC+AGG | - | chr1.4:20393236-20393255 | MS.gene052846:intron | 45.0% |
| !! | CTTTGGGATTGCTTCGTTTC+CGG | + | chr1.4:20392545-20392564 | None:intergenic | 45.0% |
| AGTATTCGTGGCTGCAGGTT+CGG | - | chr1.4:20393241-20393260 | MS.gene052846:intron | 50.0% | |
| CAAAGTGGCCATGGTGAAGA+AGG | - | chr1.4:20392115-20392134 | MS.gene052846:CDS | 50.0% | |
| TTTGGTGAAGAACACAGCCC+CGG | - | chr1.4:20393026-20393045 | MS.gene052846:CDS | 50.0% | |
| ! | GCTGCAGGTTCGGTAAAGAT+TGG | - | chr1.4:20393251-20393270 | MS.gene052846:intron | 50.0% |
| !! | GGAGTGTGGAGGTTAGTTTG+AGG | - | chr1.4:20392377-20392396 | MS.gene052846:CDS | 50.0% |
| ! | GGTGCTGAAGCCACTGAAGA+AGG | - | chr1.4:20391623-20391642 | MS.gene052846:intron | 55.0% |
| GTGAAGAACACAGCCCCGGT+AGG | - | chr1.4:20393030-20393049 | MS.gene052846:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 20391194 | 20393384 | 20391194 | ID=MS.gene052846 |
| chr1.4 | mRNA | 20391194 | 20393384 | 20391194 | ID=MS.gene052846.t1;Parent=MS.gene052846 |
| chr1.4 | exon | 20393328 | 20393384 | 20393328 | ID=MS.gene052846.t1.exon1;Parent=MS.gene052846.t1 |
| chr1.4 | CDS | 20393328 | 20393384 | 20393328 | ID=cds.MS.gene052846.t1;Parent=MS.gene052846.t1 |
| chr1.4 | exon | 20392805 | 20393225 | 20392805 | ID=MS.gene052846.t1.exon2;Parent=MS.gene052846.t1 |
| chr1.4 | CDS | 20392805 | 20393225 | 20392805 | ID=cds.MS.gene052846.t1;Parent=MS.gene052846.t1 |
| chr1.4 | exon | 20392352 | 20392470 | 20392352 | ID=MS.gene052846.t1.exon3;Parent=MS.gene052846.t1 |
| chr1.4 | CDS | 20392352 | 20392470 | 20392352 | ID=cds.MS.gene052846.t1;Parent=MS.gene052846.t1 |
| chr1.4 | exon | 20392004 | 20392277 | 20392004 | ID=MS.gene052846.t1.exon4;Parent=MS.gene052846.t1 |
| chr1.4 | CDS | 20392004 | 20392277 | 20392004 | ID=cds.MS.gene052846.t1;Parent=MS.gene052846.t1 |
| chr1.4 | exon | 20391531 | 20391589 | 20391531 | ID=MS.gene052846.t1.exon5;Parent=MS.gene052846.t1 |
| chr1.4 | CDS | 20391531 | 20391589 | 20391531 | ID=cds.MS.gene052846.t1;Parent=MS.gene052846.t1 |
| chr1.4 | exon | 20391194 | 20391436 | 20391194 | ID=MS.gene052846.t1.exon6;Parent=MS.gene052846.t1 |
| chr1.4 | CDS | 20391194 | 20391436 | 20391194 | ID=cds.MS.gene052846.t1;Parent=MS.gene052846.t1 |
| Gene Sequence |
| Protein sequence |
