AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052884

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052884.t1 MTR_1g035640 62.414 290 95 5 1 288 19 296 5.09e-117 355
MS.gene052884.t1 MTR_1g035640 42.532 308 130 10 286 549 161 465 4.92e-56 195
MS.gene052884.t1 MTR_1g035570 44.391 419 176 10 1 405 19 394 1.36e-103 318
MS.gene052884.t1 MTR_1g035570 49.495 297 109 3 266 557 143 403 2.00e-83 266
MS.gene052884.t1 MTR_1g035620 40.278 432 196 12 1 410 23 414 1.47e-86 274
MS.gene052884.t1 MTR_1g035620 46.392 291 125 12 269 547 137 408 6.70e-63 212
MS.gene052884.t1 MTR_1g035490 54.065 246 100 4 306 550 97 330 1.07e-78 251
MS.gene052884.t1 MTR_1g035490 35.811 296 161 6 118 404 52 327 2.54e-45 163
MS.gene052884.t1 MTR_1g050845 52.536 276 98 7 1 272 23 269 1.03e-77 262
MS.gene052884.t1 MTR_1g050845 48.430 223 92 10 300 515 158 364 3.53e-47 177
MS.gene052884.t1 MTR_6g061070 32.962 449 245 13 1 404 32 469 1.46e-59 205
MS.gene052884.t1 MTR_6g061070 38.176 296 162 12 271 548 178 470 5.24e-43 160
MS.gene052884.t1 MTR_1g035650 47.938 194 84 3 1 190 23 203 7.57e-51 174
MS.gene052884.t1 MTR_5g044670 33.670 297 171 7 3 284 32 317 7.52e-40 148
MS.gene052884.t1 MTR_5g044670 31.902 163 89 4 269 412 150 309 2.25e-14 74.7
MS.gene052884.t1 MTR_6g043890 28.195 266 178 8 1 256 29 291 1.27e-25 108
MS.gene052884.t1 MTR_3g098790 26.837 313 188 8 1 291 27 320 2.53e-24 104
MS.gene052884.t1 MTR_1g108780 24.946 461 280 15 2 408 12 460 3.14e-23 103
MS.gene052884.t1 MTR_1g108780 27.240 279 167 10 297 547 186 456 2.38e-14 75.9
MS.gene052884.t1 MTR_8g103940 24.130 460 274 14 1 404 53 493 1.18e-22 101
MS.gene052884.t1 MTR_8g103940 26.182 275 171 8 297 547 227 493 1.39e-13 73.6
MS.gene052884.t1 MTR_7g050710 28.283 297 200 7 1 285 27 322 1.23e-22 99.4
MS.gene052884.t1 MTR_1g035520 28.231 294 156 11 3 254 88 368 1.76e-22 100
MS.gene052884.t1 MTR_1g035520 36.842 114 67 4 439 548 271 383 3.74e-12 68.6
MS.gene052884.t1 MTR_1g033740 36.301 146 89 3 1 146 36 177 3.45e-21 92.0
MS.gene052884.t1 MTR_7g050590 28.328 293 167 9 3 268 2 278 3.53e-21 94.7
MS.gene052884.t1 MTR_4g119990 27.273 286 186 9 1 268 29 310 4.61e-21 95.5
MS.gene052884.t1 MTR_7g050720 28.105 306 166 11 1 268 24 313 5.95e-21 94.4
MS.gene052884.t1 MTR_1g035510 46.067 89 47 1 3 91 2 89 6.67e-21 92.0
MS.gene052884.t1 MTR_7g050560 28.674 279 171 9 1 268 27 288 3.72e-20 92.0
MS.gene052884.t1 MTR_1g035480 36.986 146 86 3 1 146 31 170 3.85e-20 88.6
MS.gene052884.t1 MTR_7g050580 27.636 275 179 6 1 268 27 288 1.20e-19 90.5
MS.gene052884.t1 MTR_3g061310 25.362 276 183 8 1 268 24 284 1.42e-19 89.7
MS.gene052884.t1 MTR_1g035470 38.462 117 70 2 3 119 2 116 5.67e-19 84.0
MS.gene052884.t1 MTR_1g035500 34.247 146 93 2 1 146 39 181 9.19e-19 84.7
MS.gene052884.t1 MTR_3g061340 27.574 272 167 12 1 266 24 271 2.08e-18 85.9
MS.gene052884.t1 MTR_3g061320 25.092 271 180 7 1 266 24 276 4.00e-17 82.4
MS.gene052884.t1 MTR_3g061330 28.829 222 134 8 1 214 24 229 4.77e-17 81.6
MS.gene052884.t1 MTR_3g061350 25.091 275 180 7 1 266 24 281 7.43e-17 81.6
MS.gene052884.t1 MTR_3g061370 25.641 273 181 8 1 266 21 278 1.44e-15 77.8
MS.gene052884.t1 MTR_1g035460 40.964 83 47 1 3 83 2 84 2.62e-13 72.4
MS.gene052884.t1 MTR_3g061290 28.571 196 102 8 1 180 24 197 5.03e-13 68.6
MS.gene052884.t1 MTR_1g035540 45.588 68 33 2 344 411 8 71 1.26e-11 62.8
MS.gene052884.t1 MTR_1g035540 37.838 74 42 1 208 281 8 77 5.59e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052884.t1 AT3G18990 26.426 333 168 13 1 272 20 336 9.73e-20 91.3
MS.gene052884.t1 AT3G18990 26.426 333 168 13 1 272 20 336 1.16e-19 91.3

Find 98 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTTCAACAAGAAATATTT+TGG 0.120375 1.1:+20084915 MS.gene052884:CDS
GTTTGTTCTATTGTTCTTTA+AGG 0.123962 1.1:+20089095 MS.gene052884:CDS
TGTTTCAAGGTTAAGATATT+TGG 0.182176 1.1:+20085040 MS.gene052884:CDS
TTTGCAAAGTTTCTGAAGTA+TGG 0.207990 1.1:+20084983 MS.gene052884:CDS
AAACTCTCTGGAGTTGAAAA+TGG 0.208119 1.1:+20088887 MS.gene052884:CDS
TGGCAATGTAACATCGAAAA+AGG 0.237257 1.1:-20086234 None:intergenic
TCAAAGAGAAAAGAATTTAA+AGG 0.240458 1.1:+20088253 MS.gene052884:CDS
TTTGGGAATTGAAGGAATAT+TGG 0.249785 1.1:-20084890 None:intergenic
AGAAGTATGTGCAGAACTTT+TGG 0.251833 1.1:+20084852 MS.gene052884:CDS
TAGAGAATAATGGTGATATT+TGG 0.256711 1.1:+20084939 MS.gene052884:CDS
GCACACTTGAACAAATTTAA+AGG 0.264956 1.1:+20086438 MS.gene052884:CDS
GCACACTTGAACAAATTTAA+TGG 0.268085 1.1:+20087847 MS.gene052884:CDS
GAGCTTGATTGCTCCCTTGA+TGG 0.268197 1.1:-20086651 None:intergenic
ACCCCAATTACCAGGTTATA+AGG 0.283385 1.1:+20088204 MS.gene052884:intron
ACGATAGTATTCATGGTTAT+AGG 0.290213 1.1:+20088943 MS.gene052884:CDS
AAAGTTCTGCACATACTTCT+TGG 0.296036 1.1:-20084849 None:intergenic
AAGAATTTAAAGGAACTTCT+AGG 0.304364 1.1:+20088263 MS.gene052884:CDS
AAGCTTGGTTGCTCCCTTGA+TGG 0.305403 1.1:-20088060 None:intergenic
ATTTCTTGTTGAACACCATT+TGG 0.305917 1.1:-20084908 None:intergenic
TTGGGAATTGAAGGAATATT+GGG 0.332157 1.1:-20084889 None:intergenic
ATATTTGGTTTCAAAACAAT+TGG 0.347209 1.1:+20084954 MS.gene052884:CDS
AATTATTACGATAGTATTCA+TGG 0.354510 1.1:+20088936 MS.gene052884:CDS
GTGTTTGATGTTTCAATTGT+TGG 0.364550 1.1:+20089056 MS.gene052884:CDS
CACACTTGAACAAATTTAAA+GGG 0.370401 1.1:+20086439 MS.gene052884:CDS
CACACTTGAACAAATTTAAT+GGG 0.372826 1.1:+20087848 MS.gene052884:CDS
TTTCTTGTTGAACACCATTT+GGG 0.398115 1.1:-20084907 None:intergenic
AAGAAATCACCTGAGAATAT+TGG 0.398467 1.1:-20085262 None:intergenic
ATAGTTTATTTCTAAAGTAT+TGG 0.406626 1.1:-20085065 None:intergenic
AACTCTCTGGAGTTGAAAAT+GGG 0.410653 1.1:+20088888 MS.gene052884:CDS
CTCTCATTAACAACTTCAAC+TGG 0.412647 1.1:-20087610 None:intergenic
CTCTCATTAACAACTTCAAC+TGG 0.420982 1.1:-20086194 None:intergenic
AGCTTCAACAACTTCATCAA+TGG 0.423599 1.1:-20085101 None:intergenic
CCAAAGGAGTTTATGAAAAG+AGG 0.438669 1.1:+20088855 MS.gene052884:CDS
GAACACCATTTGGGAATTGA+AGG 0.440819 1.1:-20084898 None:intergenic
AGTTGGTGAGGACAAGACTA+TGG 0.440819 1.1:+20086476 MS.gene052884:CDS
ATACTTTCAAGATGATTTGT+TGG 0.445012 1.1:-20088292 None:intergenic
CATAGGTGGATCATGTTTCA+AGG 0.445568 1.1:+20085027 MS.gene052884:CDS
AAGTTCTGCACATACTTCTT+GGG 0.445593 1.1:-20084848 None:intergenic
AAAGAATGCAAAGTGGAGAT+TGG 0.446068 1.1:+20088993 MS.gene052884:CDS
AGGAAGTCATGAAAACTCTC+TGG 0.451275 1.1:+20088875 MS.gene052884:CDS
GACTTACCATCCTGCATCCA+TGG 0.457913 1.1:-20086268 None:intergenic
TACTTTCAAGATGATTTGTT+GGG 0.461255 1.1:-20088291 None:intergenic
GTTATAGGTTCTCTGAAGGT+TGG 0.464034 1.1:+20088958 MS.gene052884:CDS
GATATTAATTTCTTTAAGCT+TGG 0.469147 1.1:-20088075 None:intergenic
CTTGTCCTTTGAGCTTGGGT+GGG 0.470047 1.1:-20085193 None:intergenic
TTGTTATTATTACTCCATCA+AGG 0.474458 1.1:+20086637 MS.gene052884:CDS
AGAAGATCTCTTGTGACTAC+TGG 0.477196 1.1:+20087937 MS.gene052884:CDS
TATTTGGTTTCAAAACAATT+GGG 0.478070 1.1:+20084955 MS.gene052884:CDS
TGATGTGTATTCAAAATATC+CGG 0.481290 1.1:+20088731 MS.gene052884:CDS
TCTTGTCCTTTGAGCTTGGG+TGG 0.484511 1.1:-20085194 None:intergenic
CTTAAGAGTTGGTGAGGACA+TGG 0.490886 1.1:+20087879 MS.gene052884:CDS
AGTCTTACGCCCATGGATGC+AGG 0.496133 1.1:+20086258 MS.gene052884:CDS
CCGTTACTATTACTCCATCA+AGG 0.499776 1.1:+20088046 MS.gene052884:CDS
GGGATTGCAAACTTAAGAGT+TGG 0.509708 1.1:+20086459 MS.gene052884:CDS
ATATTCCTTCAATTCCCAAA+TGG 0.516176 1.1:+20084893 MS.gene052884:CDS
AATCACCTGAGAATATTGGC+TGG 0.518135 1.1:-20085258 None:intergenic
TGAATTATCACCACAAGAAG+AGG 0.531434 1.1:-20088233 None:intergenic
ATAATAACAAGAAATGAAAG+TGG 0.535068 1.1:-20086624 None:intergenic
TTACCAACATATTGCTGCCA+TGG 0.540173 1.1:-20087684 None:intergenic
CATGGTTATAGGTTCTCTGA+AGG 0.540492 1.1:+20088954 MS.gene052884:CDS
GTTGAAGTTGTTAATGAGAG+TGG 0.546800 1.1:+20086197 MS.gene052884:CDS
TCAAAGAAATTAAAATCGCA+AGG 0.552843 1.1:+20086672 MS.gene052884:CDS
TGTTATTATTACTCCATCAA+GGG 0.554861 1.1:+20086638 MS.gene052884:CDS
CAGAGAAGGCATGATTAAGA+AGG 0.558194 1.1:+20086157 MS.gene052884:CDS
GGGACTGCAAACTTAAGAGT+TGG 0.560731 1.1:+20087868 MS.gene052884:CDS
ACTACCCAGCCAATATTCTC+AGG 0.562899 1.1:+20085253 MS.gene052884:CDS
GATCTCTTGTGACTACTGGT+TGG 0.563285 1.1:+20087941 MS.gene052884:CDS
TTGCCACAGTCTTACGCCCA+TGG 0.569835 1.1:+20086251 MS.gene052884:CDS
TTAAAGAAATTAATATCGCA+AGG 0.569842 1.1:+20088081 MS.gene052884:CDS
CAATTACCAGGTTATAAGGA+AGG 0.574698 1.1:+20088208 MS.gene052884:intron
ATAGTAACGGTGAATGAAAG+TGG 0.574816 1.1:-20088033 None:intergenic
TTGTCAAAATCTTACGTCCA+TGG 0.576626 1.1:+20087667 MS.gene052884:CDS
TGTGTTTCTCCAGATTCAGA+AGG 0.578280 1.1:+20088675 MS.gene052884:intron
AATTGTTGGAAAGAACCCCT+TGG 0.578828 1.1:+20089070 MS.gene052884:CDS
TACTTTGCAGGTAGGGACAG+TGG 0.579327 1.1:+20087565 MS.gene052884:intron
CGTCCATGGCAGCAATATGT+TGG 0.579724 1.1:+20087681 MS.gene052884:CDS
AACAATAGAACAAACAGCCA+AGG 0.586982 1.1:-20089087 None:intergenic
TGCAAACTTAAGAGTTGGTG+AGG 0.587078 1.1:+20086464 MS.gene052884:CDS
ACTTACCATCCTGCATCCAT+GGG 0.589632 1.1:-20086267 None:intergenic
TTTGCAGGTGGGGACAGAGA+AGG 0.591629 1.1:+20086143 MS.gene052884:intron
ATCACCTGAGAATATTGGCT+GGG 0.592836 1.1:-20085257 None:intergenic
ACAATAGAACAAACAGCCAA+GGG 0.594426 1.1:-20089086 None:intergenic
ATATTTGCAGAATGTTCCAA+AGG 0.598638 1.1:+20088839 MS.gene052884:intron
AAAGAAGGAGTTGAAGTGAG+TGG 0.599535 1.1:+20085136 MS.gene052884:CDS
CTCTCTGGAGTTGAAAATGG+GGG 0.599653 1.1:+20088890 MS.gene052884:CDS
CGTTACTATTACTCCATCAA+GGG 0.606445 1.1:+20088047 MS.gene052884:CDS
ATTCATAAAAGAATGCAAAG+TGG 0.613826 1.1:+20088986 MS.gene052884:CDS
TGCAAACTTAAGAGTTGGTG+AGG 0.616855 1.1:+20087873 MS.gene052884:CDS
AAATACCCACCCAAGCTCAA+AGG 0.617745 1.1:+20085188 MS.gene052884:CDS
AATTACCAGGTTATAAGGAA+GGG 0.622190 1.1:+20088209 MS.gene052884:intron
AAGGAAGGGACCTCTTCTTG+TGG 0.640604 1.1:+20088223 MS.gene052884:CDS
CCTTGATGGAGTAATAGTAA+CGG 0.655922 1.1:-20088046 None:intergenic
CATCCATGGGCGTAAGACTG+TGG 0.657733 1.1:-20086254 None:intergenic
ACTCTCTGGAGTTGAAAATG+GGG 0.658989 1.1:+20088889 MS.gene052884:CDS
TTACGCCCATGGATGCAGGA+TGG 0.669386 1.1:+20086262 MS.gene052884:CDS
TCTCTGGAGTTGAAAATGGG+GGG 0.680996 1.1:+20088891 MS.gene052884:CDS
TTTGCAGGTAGGGACAGTGG+AGG 0.713017 1.1:+20087568 MS.gene052884:intron
CAATAGAACAAACAGCCAAG+GGG 0.714205 1.1:-20089085 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAAATATATTTTTTTAA+AGG - chr1.1:20086023-20086042 None:intergenic 0.0%
!! AATCTTTAATAAATAAAATG+TGG + chr1.1:20086371-20086390 MS.gene052884:intron 10.0%
!! ACTAATATTTAATCAATTAT+TGG - chr1.1:20086957-20086976 None:intergenic 10.0%
!! ATATATCATGATAAAAAATA+GGG - chr1.1:20087431-20087450 None:intergenic 10.0%
!! ATATTTAAAAAATGACTAAT+AGG - chr1.1:20087223-20087242 None:intergenic 10.0%
!! ATGATTAATTACATAAAATA+TGG + chr1.1:20088755-20088774 MS.gene052884:intron 10.0%
!! TATATATCATGATAAAAAAT+AGG - chr1.1:20087432-20087451 None:intergenic 10.0%
!! TCTTAATAAATAAAATGATA+TGG + chr1.1:20085843-20085862 MS.gene052884:intron 10.0%
!! TTATTTATCTATTATAACAA+TGG - chr1.1:20084430-20084449 None:intergenic 10.0%
!! TTTAAAAAAATAAACCAAAA+GGG + chr1.1:20087113-20087132 MS.gene052884:intron 10.0%
!! TTTGAATATGAATTAAAAAA+AGG + chr1.1:20085579-20085598 MS.gene052884:intron 10.0%
!!! AAAAAAAATTTACCTTTTAA+AGG + chr1.1:20087378-20087397 MS.gene052884:intron 10.0%
!!! ATCATTTTATATTTATTTTG+GGG - chr1.1:20087161-20087180 None:intergenic 10.0%
!!! ATTTGTTATTATTTTCTATA+AGG - chr1.1:20085654-20085673 None:intergenic 10.0%
!!! CTATCATTTTATATTTATTT+TGG - chr1.1:20087163-20087182 None:intergenic 10.0%
!!! GGTTTATTTTTTTAAAAAAA+AGG - chr1.1:20087109-20087128 None:intergenic 10.0%
!!! TTTGTTATTATTTTCTATAA+GGG - chr1.1:20085653-20085672 None:intergenic 10.0%
!!! TTTTAAAAAAATAAACCAAA+AGG + chr1.1:20087112-20087131 MS.gene052884:intron 10.0%
!!! TTTTAATTTTTTAAGTTCTA+AGG + chr1.1:20088584-20088603 MS.gene052884:intron 10.0%
!!! TTTTATTTATTAAAGATTAG+TGG - chr1.1:20086369-20086388 None:intergenic 10.0%
!! AAATAAAAGTTTAGATAAGT+TGG - chr1.1:20086911-20086930 None:intergenic 15.0%
!! AATCAATTATTGATAAATTC+AGG - chr1.1:20088357-20088376 None:intergenic 15.0%
!! AATCAATTATTGGTAAATTA+AGG - chr1.1:20086947-20086966 None:intergenic 15.0%
!! ACATTATTTCAAATTCATTA+GGG - chr1.1:20088454-20088473 None:intergenic 15.0%
!! ATATTCAAAAAATGACTAAT+AGG - chr1.1:20085568-20085587 None:intergenic 15.0%
!! ATCAATTATTGATAAATTCA+GGG - chr1.1:20088356-20088375 None:intergenic 15.0%
!! ATCAATTATTGGTAAATTAA+GGG - chr1.1:20086946-20086965 None:intergenic 15.0%
!! CATGATATATAAATAAATGT+AGG + chr1.1:20087441-20087460 MS.gene052884:intron 15.0%
!! TATAAAATGATAGAAACTAA+AGG + chr1.1:20087170-20087189 MS.gene052884:intron 15.0%
!! TCAAATTATTGATAAGTTTA+AGG + chr1.1:20088555-20088574 MS.gene052884:intron 15.0%
!!! ACTTATCAATAATTTGAAAT+AGG - chr1.1:20088552-20088571 None:intergenic 15.0%
!!! ATAGTTTATTTCTAAAGTAT+TGG - chr1.1:20085068-20085087 None:intergenic 15.0%
!!! GCATTTTTAATAACAAAAAA+AGG - chr1.1:20086703-20086722 None:intergenic 15.0%
!!! TTATTGTTTTTTTCTTCTAT+GGG + chr1.1:20085948-20085967 MS.gene052884:intron 15.0%
!!! TTTTATGTAATTAATCATAC+CGG - chr1.1:20088753-20088772 None:intergenic 15.0%
!!! TTTTTTAAAAAAAAGGTTCA+AGG - chr1.1:20087102-20087121 None:intergenic 15.0%
!! AAACATAAATTTGAAAAGCA+AGG - chr1.1:20085291-20085310 None:intergenic 20.0%
!! AACAAATTATTAGAGATTAG+TGG - chr1.1:20087782-20087801 None:intergenic 20.0%
!! AATATTATCCTATGAAAATC+GGG - chr1.1:20084693-20084712 None:intergenic 20.0%
!! AATTATTACGATAGTATTCA+TGG + chr1.1:20088936-20088955 MS.gene052884:CDS 20.0%
!! ACAAATTATTAGAGATTAGT+GGG - chr1.1:20087781-20087800 None:intergenic 20.0%
!! ACAAATTATTTCAAAGTTCT+AGG + chr1.1:20088496-20088515 MS.gene052884:intron 20.0%
!! ATAATAACAAGAAATGAAAG+TGG - chr1.1:20086627-20086646 None:intergenic 20.0%
!! ATCATAAGATTATGATACAT+TGG - chr1.1:20085624-20085643 None:intergenic 20.0%
!! CAAAAATATAACTTACAAGT+TGG + chr1.1:20086567-20086586 MS.gene052884:CDS 20.0%
!! CAAAAATATAACTTACAGAT+TGG + chr1.1:20087976-20087995 MS.gene052884:CDS 20.0%
!! CAAATTATTTCAAAGTTCTA+GGG + chr1.1:20088497-20088516 MS.gene052884:intron 20.0%
!! CAATATTATCCTATGAAAAT+CGG - chr1.1:20084694-20084713 None:intergenic 20.0%
!! GACAATGTAACATAAAAAAA+GGG - chr1.1:20087652-20087671 None:intergenic 20.0%
!! GACATTATTTCAAATTCATT+AGG - chr1.1:20088455-20088474 None:intergenic 20.0%
!! GATATTAATTTCTTTAAGCT+TGG - chr1.1:20088078-20088097 None:intergenic 20.0%
!! GCAAACATAGATAAATAAAA+CGG - chr1.1:20084782-20084801 None:intergenic 20.0%
!! TATTAACTAATGCCAAAATT+AGG - chr1.1:20086317-20086336 None:intergenic 20.0%
!! TCAAAGAGAAAAGAATTTAA+AGG + chr1.1:20088253-20088272 MS.gene052884:CDS 20.0%
!! TCATAAGATTATGATACATT+GGG - chr1.1:20085623-20085642 None:intergenic 20.0%
!! TGACAATGTAACATAAAAAA+AGG - chr1.1:20087653-20087672 None:intergenic 20.0%
!! TTAAAGAAATTAATATCGCA+AGG + chr1.1:20088081-20088100 MS.gene052884:CDS 20.0%
!!! AAATTAGAAACAATGCTTTT+TGG - chr1.1:20084638-20084657 None:intergenic 20.0%
!!! AATAAATCTAAACTTGTTTC+TGG + chr1.1:20086050-20086069 MS.gene052884:intron 20.0%
!!! AATTAGTAGACATTTTTAGA+TGG - chr1.1:20087715-20087734 None:intergenic 20.0%
!!! ACCATTGTTTTTTTTTTTTG+AGG + chr1.1:20084401-20084420 MS.gene052884:intron 20.0%
!!! ATATTTGGTTTCAAAACAAT+TGG + chr1.1:20084954-20084973 MS.gene052884:CDS 20.0%
!!! ATTTTTGGAAACAATATTAG+TGG - chr1.1:20086340-20086359 None:intergenic 20.0%
!!! CAACTTGTAAGTTATATTTT+TGG - chr1.1:20086569-20086588 None:intergenic 20.0%
!!! CAATCTGTAAGTTATATTTT+TGG - chr1.1:20087978-20087997 None:intergenic 20.0%
!!! CCATTGTTTTTTTTTTTTGA+GGG + chr1.1:20084402-20084421 MS.gene052884:intron 20.0%
!!! CTAAAAATGTCTACTAATTT+TGG + chr1.1:20087716-20087735 MS.gene052884:intron 20.0%
!!! CTAATAAAGTATCCTAATTT+TGG + chr1.1:20086302-20086321 MS.gene052884:intron 20.0%
!!! GATTAGTGGTATTTTATTTT+TGG - chr1.1:20086355-20086374 None:intergenic 20.0%
!!! GTTATTGTTTTTTTCTTCTA+TGG + chr1.1:20085947-20085966 MS.gene052884:intron 20.0%
!!! GTTTTTTGTTCTTTCTTATT+TGG + chr1.1:20088103-20088122 MS.gene052884:intron 20.0%
!!! TATTGTTTTTTTCTTCTATG+GGG + chr1.1:20085949-20085968 MS.gene052884:intron 20.0%
!!! TATTTGGTTTCAAAACAATT+GGG + chr1.1:20084955-20084974 MS.gene052884:CDS 20.0%
!!! TGAAATATTTGACTTGTTTA+TGG - chr1.1:20087328-20087347 None:intergenic 20.0%
!!! TGTAACTTTCTATTTTCTTA+GGG + chr1.1:20085771-20085790 MS.gene052884:intron 20.0%
!!! TGTTCAACAAGAAATATTTT+GGG + chr1.1:20084916-20084935 MS.gene052884:CDS 20.0%
!!! TTAAGATTAATTGCAGTTTT+TGG - chr1.1:20085829-20085848 None:intergenic 20.0%
!!! TTTTATATTTATTTTGGGGT+TGG - chr1.1:20087157-20087176 None:intergenic 20.0%
! AAAAAAATAAACCAAAAGGG+TGG + chr1.1:20087116-20087135 MS.gene052884:intron 25.0%
! AAAAAATAGGGAAACGTTAA+CGG - chr1.1:20087419-20087438 None:intergenic 25.0%
! AAAATGATAGAAACTAAAGG+AGG + chr1.1:20087173-20087192 MS.gene052884:intron 25.0%
! AAATGATAGAAACTAAAGGA+GGG + chr1.1:20087174-20087193 MS.gene052884:intron 25.0%
! AAGAATTTAAAGGAACTTCT+AGG + chr1.1:20088263-20088282 MS.gene052884:CDS 25.0%
! AATTACCAGGTTATAAAGAA+GGG + chr1.1:20086795-20086814 MS.gene052884:intron 25.0%
! ATATTATCCTATGAAAATCG+GGG - chr1.1:20084692-20084711 None:intergenic 25.0%
! ATCGTAAAATTGTGATACTT+AGG + chr1.1:20085800-20085819 MS.gene052884:intron 25.0%
! ATTCATAAAAGAATGCAAAG+TGG + chr1.1:20088986-20089005 MS.gene052884:CDS 25.0%
! CACACTTGAACAAATTTAAA+GGG + chr1.1:20086439-20086458 MS.gene052884:CDS 25.0%
! CACACTTGAACAAATTTAAT+GGG + chr1.1:20087848-20087867 MS.gene052884:CDS 25.0%
! CCCTCAAAAAAAAAAAACAA+TGG - chr1.1:20084405-20084424 None:intergenic 25.0%
! TAAAATAAGCTGCATAAAGT+GGG + chr1.1:20085521-20085540 MS.gene052884:intron 25.0%
! TAGAGAATAATGGTGATATT+TGG + chr1.1:20084939-20084958 MS.gene052884:CDS 25.0%
! TCAAAGAAATTAAAATCGCA+AGG + chr1.1:20086672-20086691 MS.gene052884:CDS 25.0%
! TCGTAAAATTGTGATACTTA+GGG + chr1.1:20085801-20085820 MS.gene052884:intron 25.0%
! TGATGTGTATTCAAAATATC+CGG + chr1.1:20088731-20088750 MS.gene052884:CDS 25.0%
! TGTTATTATTACTCCATCAA+GGG + chr1.1:20086638-20086657 MS.gene052884:CDS 25.0%
! TGTTTCAAGGTTAAGATATT+TGG + chr1.1:20085040-20085059 MS.gene052884:CDS 25.0%
! TTAAAATAAGCTGCATAAAG+TGG + chr1.1:20085520-20085539 MS.gene052884:intron 25.0%
! TTAATCAAAAACCATTATGC+AGG - chr1.1:20085504-20085523 None:intergenic 25.0%
! TTCTTTATAACCTGGTAATT+GGG - chr1.1:20086795-20086814 None:intergenic 25.0%
!! AACTATTGATTGACTACTAA+TGG - chr1.1:20084547-20084566 None:intergenic 25.0%
!! AATATCTAAAACCTGCATAA+TGG + chr1.1:20085490-20085509 MS.gene052884:intron 25.0%
!! ACATCAATCTTGAATGTTTT+AGG - chr1.1:20088717-20088736 None:intergenic 25.0%
!! ATACTTTCAAGATGATTTGT+TGG - chr1.1:20088295-20088314 None:intergenic 25.0%
!! GTAACTTTCTATTTTCTTAG+GGG + chr1.1:20085772-20085791 MS.gene052884:intron 25.0%
!! GTGTAACTTTCTATTTTCTT+AGG + chr1.1:20085770-20085789 MS.gene052884:intron 25.0%
!! GTGTTCAACAAGAAATATTT+TGG + chr1.1:20084915-20084934 MS.gene052884:CDS 25.0%
!! TTGTTATTATTACTCCATCA+AGG + chr1.1:20086637-20086656 MS.gene052884:CDS 25.0%
!!! ATATTTTGGGTAGAGAATAA+TGG + chr1.1:20084929-20084948 MS.gene052884:CDS 25.0%
!!! CTCTTGACTTTTAATTACAT+AGG + chr1.1:20085010-20085029 MS.gene052884:CDS 25.0%
!!! CTTATCCATTTTTGCATTTT+TGG + chr1.1:20085686-20085705 MS.gene052884:intron 25.0%
!!! GATTAGTGGGATTTTATTTT+TGG - chr1.1:20087768-20087787 None:intergenic 25.0%
!!! TACTTTCAAGATGATTTGTT+GGG - chr1.1:20088294-20088313 None:intergenic 25.0%
!!! TTCATCAATGGATTTTATGT+TGG - chr1.1:20085092-20085111 None:intergenic 25.0%
!!! TTGACTTTTAATTACATAGG+TGG + chr1.1:20085013-20085032 MS.gene052884:CDS 25.0%
!!! TTTCAAGAAGATGATTTGTT+GGG - chr1.1:20086880-20086899 None:intergenic 25.0%
AAGAAATCACCTGAGAATAT+TGG - chr1.1:20085265-20085284 None:intergenic 30.0%
AATGATAGAAACTAAAGGAG+GGG + chr1.1:20087175-20087194 MS.gene052884:intron 30.0%
AATTACCAGGTTATAAGGAA+GGG + chr1.1:20088209-20088228 MS.gene052884:intron 30.0%
ACGATAGTATTCATGGTTAT+AGG + chr1.1:20088943-20088962 MS.gene052884:CDS 30.0%
AGGATACTTTATTAGCTAGT+AGG - chr1.1:20086297-20086316 None:intergenic 30.0%
ATATTCCTTCAATTCCCAAA+TGG + chr1.1:20084893-20084912 MS.gene052884:CDS 30.0%
ATATTTGCAGAATGTTCCAA+AGG + chr1.1:20088839-20088858 MS.gene052884:intron 30.0%
ATGCAAAAATGGATAAGCTT+AGG - chr1.1:20085683-20085702 None:intergenic 30.0%
ATTTCTTGTTGAACACCATT+TGG - chr1.1:20084911-20084930 None:intergenic 30.0%
CAAGATTGTGATACTTAAAG+GGG + chr1.1:20085981-20086000 MS.gene052884:intron 30.0%
CAATTACCAGGTTATAAAGA+AGG + chr1.1:20086794-20086813 MS.gene052884:intron 30.0%
CCAATCAAAATTGGTATGAA+GGG + chr1.1:20085885-20085904 MS.gene052884:intron 30.0%
CGTAAAATTGTGATACTTAG+GGG + chr1.1:20085802-20085821 MS.gene052884:intron 30.0%
CTTCTTTATAACCTGGTAAT+TGG - chr1.1:20086796-20086815 None:intergenic 30.0%
GAGAAAAAATAGTGTGGATT+TGG + chr1.1:20085228-20085247 MS.gene052884:CDS 30.0%
GCAAGATTGTGATACTTAAA+GGG + chr1.1:20085980-20085999 MS.gene052884:intron 30.0%
GCACACTTGAACAAATTTAA+AGG + chr1.1:20086438-20086457 MS.gene052884:CDS 30.0%
GCACACTTGAACAAATTTAA+TGG + chr1.1:20086438-20086457 MS.gene052884:CDS 30.0%
GTAAAATTGTGATACTTAGG+GGG + chr1.1:20085803-20085822 MS.gene052884:intron 30.0%
GTGTTTGATGTTTCAATTGT+TGG + chr1.1:20089056-20089075 MS.gene052884:CDS 30.0%
TAACCATTGAAAAGACACAA+CGG + chr1.1:20084521-20084540 MS.gene052884:intron 30.0%
TCACCTATTTCAATTCATCA+TGG - chr1.1:20086398-20086417 None:intergenic 30.0%
TGACTTGATCAAAATTGGTT+TGG - chr1.1:20085716-20085735 None:intergenic 30.0%
TGCAAGATTGTGATACTTAA+AGG + chr1.1:20085979-20085998 MS.gene052884:intron 30.0%
TGCATTAACCCAATCAAAAT+TGG + chr1.1:20085876-20085895 MS.gene052884:intron 30.0%
TGTACATGATGAATTGAAAC+AGG + chr1.1:20087801-20087820 MS.gene052884:intron 30.0%
TGTGCTCTTGAAAAATTACT+TGG - chr1.1:20087832-20087851 None:intergenic 30.0%
TTATCCTAGCAAGAAAGAAA+AGG - chr1.1:20085330-20085349 None:intergenic 30.0%
TTCCTTATAACCTGGTAATT+GGG - chr1.1:20088209-20088228 None:intergenic 30.0%
TTGGGAATTGAAGGAATATT+GGG - chr1.1:20084892-20084911 None:intergenic 30.0%
TTTCAATGGTTACTACGATT+GGG - chr1.1:20084513-20084532 None:intergenic 30.0%
TTTCTTGTTGAACACCATTT+GGG - chr1.1:20084910-20084929 None:intergenic 30.0%
TTTGGGAATTGAAGGAATAT+TGG - chr1.1:20084893-20084912 None:intergenic 30.0%
! AAAATATCCCCGATTTTCAT+AGG + chr1.1:20084682-20084701 MS.gene052884:intron 30.0%
! CTTTCAAGAAGATGATTTGT+TGG - chr1.1:20086881-20086900 None:intergenic 30.0%
! TTTTCAATGGTTACTACGAT+TGG - chr1.1:20084514-20084533 None:intergenic 30.0%
!! CACTCTTTAAGACCTTTAAA+AGG - chr1.1:20087393-20087412 None:intergenic 30.0%
!! TAGCAAATGAACTCTAAAAC+AGG + chr1.1:20086095-20086114 MS.gene052884:intron 30.0%
!! TGCATTGACTTGATCAAAAT+TGG - chr1.1:20085721-20085740 None:intergenic 30.0%
!! TTGCAAATGAACTCTAAAGT+AGG + chr1.1:20087520-20087539 MS.gene052884:intron 30.0%
!! TTTGCAAAGTTTCTGAAGTA+TGG + chr1.1:20084983-20085002 MS.gene052884:CDS 30.0%
!!! CCTTCATACCAATTTTGATT+GGG - chr1.1:20085887-20085906 None:intergenic 30.0%
!!! TCTACTCTAGGTTTTTTCTT+TGG - chr1.1:20084586-20084605 None:intergenic 30.0%
AAAGAATGCAAAGTGGAGAT+TGG + chr1.1:20088993-20089012 MS.gene052884:CDS 35.0%
AAAGTTCTGCACATACTTCT+TGG - chr1.1:20084852-20084871 None:intergenic 35.0%
AACAATAGAACAAACAGCCA+AGG - chr1.1:20089090-20089109 None:intergenic 35.0%
AAGGATTTGAAGGAACTTCT+AGG + chr1.1:20086849-20086868 MS.gene052884:intron 35.0%
AAGTTCTGCACATACTTCTT+GGG - chr1.1:20084851-20084870 None:intergenic 35.0%
ACAATAGAACAAACAGCCAA+GGG - chr1.1:20089089-20089108 None:intergenic 35.0%
ACATTATCACCTTCTGAATC+TGG - chr1.1:20088687-20088706 None:intergenic 35.0%
AGCTTCAACAACTTCATCAA+TGG - chr1.1:20085104-20085123 None:intergenic 35.0%
AGTGTATTACTTTGCAGGTA+GGG + chr1.1:20087558-20087577 MS.gene052884:intron 35.0%
ATAGTAACGGTGAATGAAAG+TGG - chr1.1:20088036-20088055 None:intergenic 35.0%
CAATTACCAGGTTATAAGGA+AGG + chr1.1:20088208-20088227 MS.gene052884:intron 35.0%
CCAAAGAGAAAAGGATTTGA+AGG + chr1.1:20086839-20086858 MS.gene052884:intron 35.0%
CCAAAGGAGTTTATGAAAAG+AGG + chr1.1:20088855-20088874 MS.gene052884:CDS 35.0%
CCCAATCAAAATTGGTATGA+AGG + chr1.1:20085884-20085903 MS.gene052884:intron 35.0%
CCTTGATGGAGTAATAGTAA+CGG - chr1.1:20088049-20088068 None:intergenic 35.0%
CGTTACTATTACTCCATCAA+GGG + chr1.1:20088047-20088066 MS.gene052884:CDS 35.0%
CTCTCATTAACAACTTCAAC+TGG - chr1.1:20086197-20086216 None:intergenic 35.0%
CTTCCTTATAACCTGGTAAT+TGG - chr1.1:20088210-20088229 None:intergenic 35.0%
GAAGTTAGAAACAATGCTAG+TGG - chr1.1:20084610-20084629 None:intergenic 35.0%
GAGGACCAAAAATGCAAAAA+TGG - chr1.1:20085694-20085713 None:intergenic 35.0%
GCTACTGAAAAAGCTAAAGA+AGG + chr1.1:20085121-20085140 MS.gene052884:CDS 35.0%
GCTCAAAGGACAAGAAAAAA+TGG + chr1.1:20085202-20085221 MS.gene052884:CDS 35.0%
GGCAATGTAACATCGAAAAA+GGG - chr1.1:20086236-20086255 None:intergenic 35.0%
GGGATCAAAGAAAAAGAAGT+TGG - chr1.1:20086775-20086794 None:intergenic 35.0%
GGTCCATGATGAATTGAAAT+AGG + chr1.1:20086392-20086411 MS.gene052884:intron 35.0%
GGTGATAATCCAAAGAGAAA+AGG + chr1.1:20086830-20086849 MS.gene052884:intron 35.0%
GTTGAAGTTGTTAATGAGAG+TGG + chr1.1:20086197-20086216 MS.gene052884:CDS 35.0%
TCCTTATAACCTGGTAATTG+GGG - chr1.1:20088208-20088227 None:intergenic 35.0%
TGAATTATCACCACAAGAAG+AGG - chr1.1:20088236-20088255 None:intergenic 35.0%
TGATGAGTATATTCCTTTGC+AGG + chr1.1:20086128-20086147 MS.gene052884:intron 35.0%
TGATGAGTGTATTACTTTGC+AGG + chr1.1:20087553-20087572 MS.gene052884:intron 35.0%
TGATTGGGTTAATGCATACT+TGG - chr1.1:20085872-20085891 None:intergenic 35.0%
TGGCAAGAGAAAAAATAGTG+TGG + chr1.1:20085222-20085241 MS.gene052884:CDS 35.0%
TGGCAATGTAACATCGAAAA+AGG - chr1.1:20086237-20086256 None:intergenic 35.0%
TGTAAAAGGGGGTAAACTTA+GGG + chr1.1:20085915-20085934 MS.gene052884:intron 35.0%
TGTGCTCTTGAAAAATCACT+TGG - chr1.1:20086423-20086442 None:intergenic 35.0%
TTGTCAAAATCTTACGTCCA+TGG + chr1.1:20087667-20087686 MS.gene052884:CDS 35.0%
TTTCTTTGATCCCAATTACC+AGG + chr1.1:20086782-20086801 MS.gene052884:intron 35.0%
! AAGGGTCAAAAGTGTAAAAG+GGG + chr1.1:20085903-20085922 MS.gene052884:intron 35.0%
! CCTCTTTTCATAAACTCCTT+TGG - chr1.1:20088858-20088877 None:intergenic 35.0%
! CCTTCAAATCCTTTTCTCTT+TGG - chr1.1:20086842-20086861 None:intergenic 35.0%
! GAAGGGTCAAAAGTGTAAAA+GGG + chr1.1:20085902-20085921 MS.gene052884:intron 35.0%
! TGAAGGGTCAAAAGTGTAAA+AGG + chr1.1:20085901-20085920 MS.gene052884:intron 35.0%
! TTCTCCTTTTCTTTCTTGCT+AGG + chr1.1:20085323-20085342 MS.gene052884:intron 35.0%
! TTTTCTTGTCCTTTGAGCTT+GGG - chr1.1:20085200-20085219 None:intergenic 35.0%
! TTTTTCTTGTCCTTTGAGCT+TGG - chr1.1:20085201-20085220 None:intergenic 35.0%
!! AAACTCTCTGGAGTTGAAAA+TGG + chr1.1:20088887-20088906 MS.gene052884:CDS 35.0%
!! AAATGCTTAAAGAGTGTCTC+AGG - chr1.1:20087288-20087307 None:intergenic 35.0%
!! AACTCTCTGGAGTTGAAAAT+GGG + chr1.1:20088888-20088907 MS.gene052884:CDS 35.0%
!! AATGCTTAAAGAGTGTCTCA+GGG - chr1.1:20087287-20087306 None:intergenic 35.0%
!! AGAAGTATGTGCAGAACTTT+TGG + chr1.1:20084852-20084871 MS.gene052884:CDS 35.0%
!! CCCTTCATACCAATTTTGAT+TGG - chr1.1:20085888-20085907 None:intergenic 35.0%
!! CTTGATCAAAATTGGTTTGG+AGG - chr1.1:20085713-20085732 None:intergenic 35.0%
!!! AGAAGATCTGTTTTGACTAC+TGG + chr1.1:20086528-20086547 MS.gene052884:CDS 35.0%
AAAGAAGGAGTTGAAGTGAG+TGG + chr1.1:20085136-20085155 MS.gene052884:CDS 40.0%
AAATAGGGAAACGTTAACGG+AGG - chr1.1:20087416-20087435 None:intergenic 40.0%
AATCACCTGAGAATATTGGC+TGG - chr1.1:20085261-20085280 None:intergenic 40.0%
AATTGTTGGAAAGAACCCCT+TGG + chr1.1:20089070-20089089 MS.gene052884:CDS 40.0%
ACCCCAATTACCAGGTTATA+AGG + chr1.1:20088204-20088223 MS.gene052884:intron 40.0%
AGAAGATCTCTTGTGACTAC+TGG + chr1.1:20087937-20087956 MS.gene052884:CDS 40.0%
AGGAAGTCATGAAAACTCTC+TGG + chr1.1:20088875-20088894 MS.gene052884:CDS 40.0%
AGTATATTCCTTTGCAGGTG+GGG + chr1.1:20086133-20086152 MS.gene052884:intron 40.0%
ATAAGCTGCATAAAGTGGGA+AGG + chr1.1:20085525-20085544 MS.gene052884:intron 40.0%
ATTCTTTGACCCCAATTACC+AGG + chr1.1:20088196-20088215 MS.gene052884:intron 40.0%
CAATAGAACAAACAGCCAAG+GGG - chr1.1:20089088-20089107 None:intergenic 40.0%
CATAGGTGGATCATGTTTCA+AGG + chr1.1:20085027-20085046 MS.gene052884:CDS 40.0%
CATGGTTATAGGTTCTCTGA+AGG + chr1.1:20088954-20088973 MS.gene052884:CDS 40.0%
CCGTTACTATTACTCCATCA+AGG + chr1.1:20088046-20088065 MS.gene052884:CDS 40.0%
GAACACCATTTGGGAATTGA+AGG - chr1.1:20084901-20084920 None:intergenic 40.0%
GAGTATATTCCTTTGCAGGT+GGG + chr1.1:20086132-20086151 MS.gene052884:intron 40.0%
GAGTGTATTACTTTGCAGGT+AGG + chr1.1:20087557-20087576 MS.gene052884:intron 40.0%
GGGATTGCAAACTTAAGAGT+TGG + chr1.1:20086459-20086478 MS.gene052884:CDS 40.0%
GTAAAAGGGGGTAAACTTAG+GGG + chr1.1:20085916-20085935 MS.gene052884:intron 40.0%
GTGTAAAAGGGGGTAAACTT+AGG + chr1.1:20085914-20085933 MS.gene052884:intron 40.0%
TAGAAACTAAAGGAGGGGAA+AGG + chr1.1:20087180-20087199 MS.gene052884:intron 40.0%
TGAGTATATTCCTTTGCAGG+TGG + chr1.1:20086131-20086150 MS.gene052884:intron 40.0%
TGGATTATCACCACAAGAAG+AGG - chr1.1:20086822-20086841 None:intergenic 40.0%
TGTGTTTCTCCAGATTCAGA+AGG + chr1.1:20088675-20088694 MS.gene052884:intron 40.0%
TTACCAACATATTGCTGCCA+TGG - chr1.1:20087687-20087706 None:intergenic 40.0%
TTCTGAACTTCTTGTTGCAG+AGG + chr1.1:20084822-20084841 MS.gene052884:intron 40.0%
! AGGGTCAAAAGTGTAAAAGG+GGG + chr1.1:20085904-20085923 MS.gene052884:intron 40.0%
! ATCACCTGAGAATATTGGCT+GGG - chr1.1:20085260-20085279 None:intergenic 40.0%
! CAGAGAAGGCATGATTAAGA+AGG + chr1.1:20086157-20086176 MS.gene052884:CDS 40.0%
! GTTATAGGTTCTCTGAAGGT+TGG + chr1.1:20088958-20088977 MS.gene052884:CDS 40.0%
!! ACTCTCTGGAGTTGAAAATG+GGG + chr1.1:20088889-20088908 MS.gene052884:CDS 40.0%
!! TGCAAACTTAAGAGTTGGTG+AGG + chr1.1:20086464-20086483 MS.gene052884:CDS 40.0%
!!! GATCTGTTTTGACTACTGGT+TGG + chr1.1:20086532-20086551 MS.gene052884:CDS 40.0%
AAAGAAGGGACCTCTTCTTG+TGG + chr1.1:20086809-20086828 MS.gene052884:intron 45.0%
AAATACCCACCCAAGCTCAA+AGG + chr1.1:20085188-20085207 MS.gene052884:CDS 45.0%
AACCAAAAGGGTGGTAGCAA+AGG + chr1.1:20087125-20087144 MS.gene052884:intron 45.0%
ACACCTCACTTAAAGTGACG+TGG - chr1.1:20085754-20085773 None:intergenic 45.0%
ACTACCCAGCCAATATTCTC+AGG + chr1.1:20085253-20085272 MS.gene052884:CDS 45.0%
ACTTACCATCCTGCATCCAT+GGG - chr1.1:20086270-20086289 None:intergenic 45.0%
CACCTCACTTAAAGTGACGT+GGG - chr1.1:20085753-20085772 None:intergenic 45.0%
GAGGTCCCTTCTTTATAACC+TGG - chr1.1:20086803-20086822 None:intergenic 45.0%
GATCTCTTGTGACTACTGGT+TGG + chr1.1:20087941-20087960 MS.gene052884:CDS 45.0%
GGGACTGCAAACTTAAGAGT+TGG + chr1.1:20087868-20087887 MS.gene052884:CDS 45.0%
! AATGCTAGTGGCTCTACTCT+AGG - chr1.1:20084598-20084617 None:intergenic 45.0%
! TGGCCGTTGTGTCTTTTCAA+TGG - chr1.1:20084527-20084546 None:intergenic 45.0%
!! AGTTGGTGAGGACAAGACTA+TGG + chr1.1:20086476-20086495 MS.gene052884:CDS 45.0%
!! CTCTCTGGAGTTGAAAATGG+GGG + chr1.1:20088890-20088909 MS.gene052884:CDS 45.0%
!! CTTAAGAGTTGGTGAGGACA+TGG + chr1.1:20086470-20086489 MS.gene052884:CDS 45.0%
!! TCTCTGGAGTTGAAAATGGG+GGG + chr1.1:20088891-20088910 MS.gene052884:CDS 45.0%
!!! AAACTTTTATTTTTTTAAAT+TGG + chr1.1:20086919-20086938 MS.gene052884:intron 5.0%
!!! ATATGATTTAAATTTTTTTT+AGG + chr1.1:20087244-20087263 MS.gene052884:intron 5.0%
!!! ATTATTTAATTTTTATTTCA+CGG + chr1.1:20084469-20084488 MS.gene052884:intron 5.0%
!!! TATCATTTTATATTTATTTT+GGG - chr1.1:20087162-20087181 None:intergenic 5.0%
!!! TATGATTTAAATTTTTTTTA+GGG + chr1.1:20087245-20087264 MS.gene052884:intron 5.0%
AAGCTTGGTTGCTCCCTTGA+TGG - chr1.1:20088063-20088082 None:intergenic 50.0%
AAGGAAGGGACCTCTTCTTG+TGG + chr1.1:20088223-20088242 MS.gene052884:CDS 50.0%
CGTCCATGGCAGCAATATGT+TGG + chr1.1:20087681-20087700 MS.gene052884:CDS 50.0%
CTTGTCCTTTGAGCTTGGGT+GGG - chr1.1:20085196-20085215 None:intergenic 50.0%
GACTTACCATCCTGCATCCA+TGG - chr1.1:20086271-20086290 None:intergenic 50.0%
GAGCTTGATTGCTCCCTTGA+TGG - chr1.1:20086654-20086673 None:intergenic 50.0%
GAGGTCCCTTCCTTATAACC+TGG - chr1.1:20088217-20088236 None:intergenic 50.0%
TACTTTGCAGGTAGGGACAG+TGG + chr1.1:20087565-20087584 MS.gene052884:intron 50.0%
TCTTGTCCTTTGAGCTTGGG+TGG - chr1.1:20085197-20085216 None:intergenic 50.0%
! CACCCACGTCACTTTAAGTG+AGG + chr1.1:20085748-20085767 MS.gene052884:intron 50.0%
! CACCTTTGCTACCACCCTTT+TGG - chr1.1:20087130-20087149 None:intergenic 50.0%
AGTCTTACGCCCATGGATGC+AGG + chr1.1:20086258-20086277 MS.gene052884:CDS 55.0%
CATCCATGGGCGTAAGACTG+TGG - chr1.1:20086257-20086276 None:intergenic 55.0%
TTACGCCCATGGATGCAGGA+TGG + chr1.1:20086262-20086281 MS.gene052884:CDS 55.0%
TTCTCTGTCCCCACCTGCAA+AGG - chr1.1:20086144-20086163 None:intergenic 55.0%
TTGCCACAGTCTTACGCCCA+TGG + chr1.1:20086251-20086270 MS.gene052884:CDS 55.0%
TTTGCAGGTAGGGACAGTGG+AGG + chr1.1:20087568-20087587 MS.gene052884:intron 55.0%
TTTGCAGGTGGGGACAGAGA+AGG + chr1.1:20086143-20086162 MS.gene052884:intron 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 20084396 20089115 20084396 ID=MS.gene052884
chr1.1 mRNA 20084396 20089115 20084396 ID=MS.gene052884.t1;Parent=MS.gene052884
chr1.1 exon 20084396 20084398 20084396 ID=MS.gene052884.t1.exon1;Parent=MS.gene052884.t1
chr1.1 CDS 20084396 20084398 20084396 ID=cds.MS.gene052884.t1;Parent=MS.gene052884.t1
chr1.1 exon 20084842 20085274 20084842 ID=MS.gene052884.t1.exon2;Parent=MS.gene052884.t1
chr1.1 CDS 20084842 20085274 20084842 ID=cds.MS.gene052884.t1;Parent=MS.gene052884.t1
chr1.1 exon 20086150 20086283 20086150 ID=MS.gene052884.t1.exon3;Parent=MS.gene052884.t1
chr1.1 CDS 20086150 20086283 20086150 ID=cds.MS.gene052884.t1;Parent=MS.gene052884.t1
chr1.1 exon 20086414 20086693 20086414 ID=MS.gene052884.t1.exon4;Parent=MS.gene052884.t1
chr1.1 CDS 20086414 20086693 20086414 ID=cds.MS.gene052884.t1;Parent=MS.gene052884.t1
chr1.1 exon 20087575 20087702 20087575 ID=MS.gene052884.t1.exon5;Parent=MS.gene052884.t1
chr1.1 CDS 20087575 20087702 20087575 ID=cds.MS.gene052884.t1;Parent=MS.gene052884.t1
chr1.1 exon 20087823 20088102 20087823 ID=MS.gene052884.t1.exon6;Parent=MS.gene052884.t1
chr1.1 CDS 20087823 20088102 20087823 ID=cds.MS.gene052884.t1;Parent=MS.gene052884.t1
chr1.1 exon 20088218 20088310 20088218 ID=MS.gene052884.t1.exon7;Parent=MS.gene052884.t1
chr1.1 CDS 20088218 20088310 20088218 ID=cds.MS.gene052884.t1;Parent=MS.gene052884.t1
chr1.1 exon 20088688 20088752 20088688 ID=MS.gene052884.t1.exon8;Parent=MS.gene052884.t1
chr1.1 CDS 20088688 20088752 20088688 ID=cds.MS.gene052884.t1;Parent=MS.gene052884.t1
chr1.1 exon 20088849 20089115 20088849 ID=MS.gene052884.t1.exon9;Parent=MS.gene052884.t1
chr1.1 CDS 20088849 20089115 20088849 ID=cds.MS.gene052884.t1;Parent=MS.gene052884.t1
Gene Sequence

>MS.gene052884

ATGGTACCATTGTTTTTTTTTTTTGAGGGTACCATTGTTATAATAGATAAATAAAATAAAATGATAAGTTAATATTATTTAATTTTTATTTCACGGTTGTAATATTATTTATTTCCCAATCGTAGTAACCATTGAAAAGACACAACGGCCATTAGTAGTCAATCAATAGTTGAACAATTTTAGTACACCAAAGAAAAAACCTAGAGTAGAGCCACTAGCATTGTTTCTAACTTCGTAATCCAAAAAGCATTGTTTCTAATTTCTTCGTGATTCATAATGTCATTTCAAAATATCCCCGATTTTCATAGGATAATATTGCAAGATAAGAAGCTTGTAAGCATATACATTAGTACACTCTATATTTACAATATGTTGCATTGATACCGTTTTATTTATCTATGTTTGCTTTTAAAAATGTTGATATCTTTCTGAACTTCTTGTTGCAGAGGATTCCCAAGAAGTATGTGCAGAACTTTTGGAAAAGAATATCAAACCCAATATTCCTTCAATTCCCAAATGGTGTTCAACAAGAAATATTTTGGGTAGAGAATAATGGTGATATTTGGTTTCAAAACAATTGGGAAAGTTTTGCAAAGTTTCTGAAGTATGGATATCTCTTGACTTTTAATTACATAGGTGGATCATGTTTCAAGGTTAAGATATTTGGTGCCAATACTTTAGAAATAAACTATTCCAACATAAAATCCATTGATGAAGTTGTTGAAGCTACTGAAAAAGCTAAAGAAGGAGTTGAAGTGAGTGGTGATAGTGATAAGAGTTTAGATGAAAGTGAAATACCCACCCAAGCTCAAAGGACAAGAAAAAATGGCAAGAGAAAAAATAGTGTGGATTTGGATACTACCCAGCCAATATTCTCAGGTGATTTCTTTTACCTTGCTTTTCAAATTTATGTTTCTTTTGTACTTTTTCTCCTTTTCTTTCTTGCTAGGATAATGATTTTTTTGTTATAGTTTTGTTTTTATATATTACAATTTTAATAAATTAAAAAATTTAATTATTTTAACTAGTTTTTCATCATTTCTAACTATTTGAAGAAGTTGAGAATCTTGCTTAAGAAAAATGAGAATCTTAAGAATATCTAAAACCTGCATAATGGTTTTTGATTAAAATAAGCTGCATAAAGTGGGAAGGTGTTTTGAATAACTTTTCCTATTAGTCATTTTTTGAATATGAATTAAAAAAAGGTTTAATTACAGTTTTGATCCCAATGTATCATAATCTTATGATTTTGATCCCTTATAGAAAATAATAACAAATCTGTCTCCTAAGCTTATCCATTTTTGCATTTTTGGTCCTCCAAACCAATTTTGATCAAGTCAATGCATACGTGACACCCACGTCACTTTAAGTGAGGTGTAACTTTCTATTTTCTTAGGGGTCAAAATCGTAAAATTGTGATACTTAGGGGGCCAAAAACTGCAATTAATCTTAATAAATAAAATGATATGGATGCCAAGTATGCATTAACCCAATCAAAATTGGTATGAAGGGTCAAAAGTGTAAAAGGGGGTAAACTTAGGGGATTGATTTGTTATTGTTTTTTTCTTCTATGGGGACAATATTGCAAGATTGTGATACTTAAAGGGGCAAAACTGCAATTAAACCTTTAAAAAAATATATTTTTATCATGATGAATAAATCTAAACTTGTTTCTGGTAAAATTACTTTTTCTAATACGTAGCAAATGAACTCTAAAACAGGAAATTTTTAATGATGAGTATATTCCTTTGCAGGTGGGGACAGAGAAGGCATGATTAAGAAGGCTAAAAATTGTTCACCAGTTGAAGTTGTTAATGAGAGTGGCAATAATGAGAATCCCTTTTTCGATGTTACATTGCCACAGTCTTACGCCCATGGATGCAGGATGGTAAGTCTATCCTACTAGCTAATAAAGTATCCTAATTTTGGCATTAGTTAATACCACTAATATTGTTTCCAAAAATAAAATACCACTAATCTTTAATAAATAAAATGTGGTCCATGATGAATTGAAATAGGTGATACCAAGTGATTTTTCAAGAGCACACTTGAACAAATTTAAAGGGATTGCAAACTTAAGAGTTGGTGAGGACAAGACTATGGAAGTGAATGTGAACTTTGAAGATAATAATAGAAGATCTGTTTTGACTACTGGTTGGAAGTCATTTAACCAAAAATATAACTTACAAGTTGGTGATAAATGTAAATTTGTGATGACTCAAAGAGATCCACTTTCATTTCTTGTTATTATTACTCCATCAAGGGAGCAATCAAGCTCAAAGAAATTAAAATCGCAAGGTTTTTCCTTTTTTTGTTATTAAAAATGCTTATAGATATTTGAATTCACTAGTTTTTTTTTTTTTTTTACTTTTTTTTCCAACTTCTTTTTCTTTGATCCCAATTACCAGGTTATAAAGAAGGGACCTCTTCTTGTGGTGATAATCCAAAGAGAAAAGGATTTGAAGGAACTTCTAGGAGCTGCCCAACAAATCATCTTCTTGAAAGTATTCTTTTAACTTATCTAAACTTTTATTTTTTTAAATTGGTCCCTTAATTTACCAATAATTGATTAAATATTAGTTGTTTATAGTATATTTAAACTAAAATATTGAATTTTTATATGTTACTATTTTAATAAATCAAAAAATTTAATTATTTTAATGAATTTTTCATCATTTGATTACTATTTGAATAAAATGAAAACCTTGAACCTTTTTTTTAAAAAAATAAACCAAAAGGGTGGTAGCAAAGGTGCTAGCCAACCCCAAAATAAATATAAAATGATAGAAACTAAAGGAGGGGAAAGGTGTTTTGAATAACTTTTCCTATTAGTCATTTTTTAAATATGATATGATTTAAATTTTTTTTAGGGTCTTGTTAACGAGTGTCCCTGAGACACTCTTTAAGCATTTCAAAAGAAGAAATTATTCCATAAACAAGTCAAATATTTCAATTTTCAATGCATTAATTACATAAATTTTCAAAAAAAATTTACCTTTTAAAGGTCTTAAAGAGTGCCTCCGTTAACGTTTCCCTATTTTTTATCATGATATATAAATAAATGTAGGCTTGTTTCTAGTAAAATTACTTTTTTTTTGTCAAGAAAATTACTTTTTCTAATACGTTGCAAATGAACTCTAAAGTAGGAAATTTTTAATGATGAGTGTATTACTTTGCAGGTAGGGACAGTGGAGGCATGATTAAAAATTGCTCACCAGTTGAAGTTGTTAATGAGAGAGACAATAATGAGAATCCCTTTTTTTATGTTACATTGTCAAAATCTTACGTCCATGGCAGCAATATGTTGGTAAGTTTACCATCTAAAAATGTCTACTAATTTTGGCTTTAATTAACACTAATATATTGTTTCCAAAAATAAAATCCCACTAATCTCTAATAATTTGTTGTACATGATGAATTGAAACAGGTGATACCAAGTAATTTTTCAAGAGCACACTTGAACAAATTTAATGGGACTGCAAACTTAAGAGTTGGTGAGGACATGGTTATGAAAGTGAATGTGACGTTTGAAGATAAGTATAGAAGATCTCTTGTGACTACTGGTTGGAAATCATTTAACCAAAAATATAACTTACAGATTGGTGATGAATGTAAATTTGTGATGACTCAAAGAGAACCACTTTCATTCACCGTTACTATTACTCCATCAAGGGAGCAACCAAGCTTAAAGAAATTAATATCGCAAGGTTTTTTGTTCTTTCTTATTTGGTTTTATGTTATTGAAAATGCTTTTATTTGATATTTGAATTCACTAGTTTTTTTTCTTCTTTCAACTTCTTATTCTTTGACCCCAATTACCAGGTTATAAGGAAGGGACCTCTTCTTGTGGTGATAATTCAAAGAGAAAAGAATTTAAAGGAACTTCTAGGAGCTGCCCAACAAATCATCTTGAAAGTATTCTTCCAACTTATCTAAACTTTTATTTTTTAATTTGATCCCTGAATTTATCAATAATTGATTAAGTCTTTGAACTTAAATGTTTTTAATTGTTTAGTGTATATTTAAACTTATATATTAAATTATTTATGATTATGCCCTAATGAATTTGAAATAATGTCAAGTTTTTTAAATGTGTGTTTACAAATTATTTCAAAGTTCTAGGGTTCAATTAAGTTTTTTAACTCAGTCATTGCCTATTTCAAATTATTGATAAGTTTAAGGACATCATTTTAATTTTTTAAGTTCTAAGGCATATTTCTAAATCTCTAAATAATTTATAGAACTTTTTTTTTTTAAATAAGTTTATATATTAACATTTTGTGTTTCTCCAGATTCAGAAGGTGATAATGTGAAGAAACCTAAAACATTCAAGATTGATGTGTATTCAAAATATCCGGTATGATTAATTACATAAAATATGGTTACTATGTTAATATATAGATAGAGATGTTAGAGCTACATATATACATAATATTTTTGTTTATATTTGCAGAATGTTCCAAAGGAGTTTATGAAAAGAGGAAGTCATGAAAACTCTCTGGAGTTGAAAATGGGGGGACGATCATGTTTTGTAAAAGTGAATTATTACGATAGTATTCATGGTTATAGGTTCTCTGAAGGTTGGAGACAATTCATAAAAGAATGCAAAGTGGAGATTGGAGATACTCTTCTCTTCAAGTTGATTGATGAGAGCAAGTTTGTGTTTGATGTTTCAATTGTTGGAAAGAACCCCTTGGCTGTTTGTTCTATTGTTCTTTAA
Protein sequence

>MS.gene052884.t1

MRIPKKYVQNFWKRISNPIFLQFPNGVQQEIFWVENNGDIWFQNNWESFAKFLKYGYLLTFNYIGGSCFKVKIFGANTLEINYSNIKSIDEVVEATEKAKEGVEVSGDSDKSLDESEIPTQAQRTRKNGKRKNSVDLDTTQPIFSGGDREGMIKKAKNCSPVEVVNESGNNENPFFDVTLPQSYAHGCRMVIPSDFSRAHLNKFKGIANLRVGEDKTMEVNVNFEDNNRRSVLTTGWKSFNQKYNLQVGDKCKFVMTQRDPLSFLVIITPSREQSSSKKLKSQGRDSGGMIKNCSPVEVVNERDNNENPFFYVTLSKSYVHGSNMLVIPSNFSRAHLNKFNGTANLRVGEDMVMKVNVTFEDKYRRSLVTTGWKSFNQKYNLQIGDECKFVMTQREPLSFTVTITPSREQPSLKKLISQGYKEGTSSCGDNSKRKEFKGTSRSCPTNHLENSEGDNVKKPKTFKIDVYSKYPNVPKEFMKRGSHENSLELKMGGRSCFVKVNYYDSIHGYRFSEGWRQFIKECKVEIGDTLLFKLIDESKFVFDVSIVGKNPLAVCSIVL