AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052831

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052831.t1 MTR_1g035570 82.234 394 58 3 1 382 1 394 0.0 637
MS.gene052831.t1 MTR_1g035490 68.652 319 53 7 104 381 15 327 1.93e-131 380
MS.gene052831.t1 MTR_1g035640 44.632 475 157 13 1 381 1 463 3.32e-115 343
MS.gene052831.t1 MTR_1g035620 43.990 416 190 12 1 381 1 408 1.58e-103 312
MS.gene052831.t1 MTR_1g050845 43.377 385 155 12 1 346 1 361 2.13e-82 268
MS.gene052831.t1 MTR_6g061070 32.965 452 210 11 14 381 27 469 7.70e-62 206
MS.gene052831.t1 MTR_1g035650 42.308 208 102 3 1 195 1 203 2.71e-46 157
MS.gene052831.t1 MTR_7g050560 35.636 275 158 8 14 275 22 290 3.01e-35 132
MS.gene052831.t1 MTR_5g044670 28.720 289 179 6 14 280 25 308 1.15e-33 128
MS.gene052831.t1 MTR_7g050710 31.894 301 167 8 8 275 12 307 1.24e-32 125
MS.gene052831.t1 MTR_3g098790 32.746 284 163 8 14 275 22 299 1.90e-32 124
MS.gene052831.t1 MTR_1g108780 25.110 454 239 14 20 381 12 456 2.35e-32 127
MS.gene052831.t1 MTR_7g050590 33.449 287 151 10 21 275 2 280 9.66e-32 122
MS.gene052831.t1 MTR_8g103940 28.339 307 173 11 14 285 48 342 2.16e-30 122
MS.gene052831.t1 MTR_7g050580 34.035 285 149 10 14 275 22 290 1.61e-28 114
MS.gene052831.t1 MTR_1g035480 43.151 146 68 5 14 155 26 160 1.15e-27 108
MS.gene052831.t1 MTR_3g061310 27.143 280 182 7 9 273 12 284 1.37e-27 110
MS.gene052831.t1 MTR_7g050720 29.221 308 161 9 14 275 19 315 2.76e-27 110
MS.gene052831.t1 MTR_3g061350 28.873 284 171 9 9 273 12 283 2.93e-26 107
MS.gene052831.t1 MTR_1g033740 38.255 149 73 5 14 155 31 167 4.70e-25 101
MS.gene052831.t1 MTR_1g035510 31.818 220 121 8 21 218 2 214 5.20e-25 102
MS.gene052831.t1 MTR_3g061340 27.636 275 176 11 9 273 12 273 6.82e-25 102
MS.gene052831.t1 MTR_3g061320 26.429 280 178 9 9 273 12 278 1.51e-24 102
MS.gene052831.t1 MTR_1g035520 26.667 300 168 6 21 273 88 382 7.59e-23 99.4
MS.gene052831.t1 MTR_1g035520 41.304 92 50 2 294 381 291 382 6.82e-13 69.7
MS.gene052831.t1 MTR_3g061370 26.715 277 186 9 9 273 9 280 2.14e-22 96.3
MS.gene052831.t1 MTR_1g035500 37.584 149 86 3 14 156 34 181 2.25e-22 94.0
MS.gene052831.t1 MTR_4g119990 27.368 285 173 10 9 261 15 297 5.31e-22 96.7
MS.gene052831.t1 MTR_1g035470 40.741 108 61 2 21 126 2 108 1.62e-21 90.1
MS.gene052831.t1 MTR_6g043890 27.612 268 172 7 13 259 23 289 1.85e-21 94.7
MS.gene052831.t1 MTR_1g035460 25.085 295 172 7 21 275 2 287 3.34e-21 94.7
MS.gene052831.t1 MTR_3g061330 27.586 203 135 6 9 201 12 212 4.79e-19 86.3
MS.gene052831.t1 MTR_3g061290 30.952 168 110 3 9 172 12 177 5.27e-19 85.1
MS.gene052831.t1 MTR_7g050640 41.441 111 55 4 3 103 5 115 1.13e-13 67.4
MS.gene052831.t1 MTR_3g005480 24.444 270 159 8 14 276 30 261 2.81e-13 69.7
MS.gene052831.t1 MTR_4g068320 35.644 101 59 2 7 101 4 104 1.54e-12 68.9
MS.gene052831.t1 MTR_3g061220 30.172 116 68 3 9 122 12 116 1.11e-11 62.0
MS.gene052831.t1 MTR_5g070440 22.761 268 174 7 14 276 30 269 2.19e-11 64.3
MS.gene052831.t1 MTR_1g034240 33.663 101 61 2 7 101 5 105 2.79e-11 65.1
MS.gene052831.t1 MTR_3g005420 25.461 271 163 8 14 276 298 537 9.62e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052831.t1 AT3G18990 25.000 336 182 10 7 275 4 336 2.89e-19 88.6
MS.gene052831.t1 AT3G18990 24.189 339 187 9 7 278 4 339 1.40e-18 86.7

Find 76 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTAGCTGTGCTTCTTTA+AGG 0.101734 1.4:-20577331 MS.gene052831:CDS
CAACACCGTTTGGAAATTTA+AGG 0.151014 1.4:+20579133 None:intergenic
CTTTGGGATTGCTTCGTTTC+CGG 0.165431 1.4:+20578013 None:intergenic
TATTTCTCTGCATATTTCTT+AGG 0.182822 1.4:+20579183 None:intergenic
TTTGCAAAGCCTTTCAAATA+TGG 0.200041 1.4:-20579048 MS.gene052831:CDS
TTAAAACCTAGTAGTTTCTT+TGG 0.230973 1.4:+20577996 None:intergenic
ATTGTCCTTTGAGCTTTCTT+TGG 0.254871 1.4:+20578826 None:intergenic
AGAAATATGCAGAGAAATAT+TGG 0.272878 1.4:-20579179 MS.gene052831:CDS
TTAATGGAACTGCAACAATA+AGG 0.277244 1.4:-20578214 MS.gene052831:CDS
ACATAACACATTCAAGGTTT+TGG 0.285361 1.4:-20577683 MS.gene052831:CDS
TGGAGAGTAATGGTGATATT+TGG 0.287546 1.4:-20579092 MS.gene052831:CDS
TTGGAGATACTTGTCTCTTT+AGG 0.296651 1.4:-20577388 MS.gene052831:CDS
TTTGGAAATTTAAGGAATAT+AGG 0.302976 1.4:+20579141 None:intergenic
AAAGCTCAAAGGACAATAAA+TGG 0.303877 1.4:-20578820 MS.gene052831:CDS
ATATTTGGTTTCAAAAGAAT+TGG 0.305799 1.4:-20579077 MS.gene052831:CDS
TTACACCAATGGCTATTTCT+TGG 0.306445 1.4:-20578350 MS.gene052831:intron
CTCTTAACTTTCAAATTCAT+TGG 0.314459 1.4:-20579021 MS.gene052831:CDS
GTGGTGGTTGGAAAATATTC+AGG 0.328531 1.4:-20578124 MS.gene052831:CDS
TTGGAAATTTAAGGAATATA+GGG 0.346499 1.4:+20579142 None:intergenic
CATTAACAGCTTCAGATGTT+TGG 0.351304 1.4:+20578407 None:intergenic
TTATAAAGAAAGATCTTGTT+TGG 0.355178 1.4:-20578147 MS.gene052831:CDS
GAGGTTAGTTTGAGGTATTA+TGG 0.363534 1.4:-20578170 MS.gene052831:CDS
AATATTATTCTATGAAAATC+TGG 0.366274 1.4:+20579330 None:intergenic
TAAAACCTAGTAGTTTCTTT+GGG 0.368375 1.4:+20577997 None:intergenic
TAATGGAACTGCAACAATAA+GGG 0.376410 1.4:-20578213 MS.gene052831:CDS
ATTGTGACAATGAATGAAAA+AGG 0.410109 1.4:+20578044 None:intergenic
TATTTGGTTTCAAAAGAATT+GGG 0.412169 1.4:-20579076 MS.gene052831:CDS
ATAATTTATTTCTAAAGTAT+TGG 0.414924 1.4:+20578966 None:intergenic
GTGTTATGTTTCATCACATC+AGG 0.425287 1.4:+20577697 None:intergenic
TATAAAGAAAGATCTTGTTT+GGG 0.427295 1.4:-20578146 MS.gene052831:CDS
GATGAAACATAACACATTCA+AGG 0.454763 1.4:-20577689 MS.gene052831:CDS
AAGTGATGAAGAGAGTGATA+AGG 0.461668 1.4:-20578857 MS.gene052831:CDS
AAAGAATGCAATGTGGAGAT+TGG 0.464528 1.4:-20577407 MS.gene052831:CDS
CAAAGTGGCCATGGTGAAGA+AGG 0.465563 1.4:-20578440 MS.gene052831:CDS
TGTCATTATAACTTCAAAAG+AGG 0.475259 1.4:+20578378 None:intergenic
TTAACTTTCAAATTCATTGG+TGG 0.475675 1.4:-20579018 MS.gene052831:CDS
AGTATTCGTGGCTGTAGGTT+CGG 0.481056 1.4:-20577452 MS.gene052831:CDS
GCTGTAGGTTCGGTAAAGAT+TGG 0.487428 1.4:-20577442 MS.gene052831:CDS
GGTGCTGAAGCCACTGAAGA+AGG 0.489506 1.4:-20578919 MS.gene052831:CDS
CCAAAGGAATTTATGAAAAG+AGG 0.492978 1.4:-20577545 MS.gene052831:CDS
GCAATCCCAAAGAAACTACT+AGG 0.493084 1.4:-20578002 MS.gene052831:intron
GATCTTGTTTGGGTGGTGGT+TGG 0.501988 1.4:-20578136 MS.gene052831:CDS
GTCATTATAACTTCAAAAGA+GGG 0.507540 1.4:+20578379 None:intergenic
GGAGTGTGGAGGTTAGTTTG+AGG 0.513468 1.4:-20578178 MS.gene052831:CDS
ACTTTCTTTACCTTCTTCAG+TGG 0.514754 1.4:+20578909 None:intergenic
GATGAGGAAGCCACTGAAGA+AGG 0.517797 1.4:-20578886 MS.gene052831:CDS
AAGAGATATCCATATTTGAA+AGG 0.520085 1.4:+20579039 None:intergenic
ACTTTCTTCACCTTCTTCAG+TGG 0.520796 1.4:+20578876 None:intergenic
AACTATTATGAGAGTATTCG+TGG 0.521105 1.4:-20577464 MS.gene052831:CDS
AGGATGTCATGAAAATATTG+TGG 0.531604 1.4:-20577525 MS.gene052831:CDS
ATTGTCACAATTACTCGTGC+CGG 0.532896 1.4:-20578032 MS.gene052831:CDS
ATATTCCTTAAATTTCCAAA+CGG 0.536219 1.4:-20579138 MS.gene052831:CDS
AATGGCAAGAGAAAATTCTC+AGG 0.536390 1.4:-20578802 MS.gene052831:intron
AAAGAAAGATCTTGTTTGGG+TGG 0.538945 1.4:-20578143 MS.gene052831:CDS
AATATCAAAGCAGTTGATGA+AGG 0.544297 1.4:-20578940 MS.gene052831:CDS
GAAAGATCTTGTTTGGGTGG+TGG 0.546468 1.4:-20578140 MS.gene052831:CDS
CAATAAGGGTTGGTAATGAA+AGG 0.551596 1.4:-20578199 MS.gene052831:CDS
TCTTTAGGTTAATTGATGAA+AGG 0.553116 1.4:-20577373 MS.gene052831:CDS
GTAAATTTGAGATGATTCGA+CGG 0.557247 1.4:-20578070 MS.gene052831:CDS
TTTGGTGAAGAACACAGCCC+CGG 0.573521 1.4:-20577665 MS.gene052831:intron
GGAACTGCAACAATAAGGGT+TGG 0.581562 1.4:-20578209 MS.gene052831:CDS
GTATTTGCAGAGTGTACCAA+AGG 0.583029 1.4:-20577561 MS.gene052831:intron
ACTTACCAAGAAATAGCCAT+TGG 0.587587 1.4:+20578345 None:intergenic
GAGAAAGTCATGGTTCGTAA+AGG 0.590660 1.4:-20577489 MS.gene052831:CDS
AGGTTGTAACAAAGTGGCCA+TGG 0.594476 1.4:-20578449 MS.gene052831:CDS
CTTTACAGGTTGTAACAAAG+TGG 0.599398 1.4:-20578455 MS.gene052831:intron
AGAAGGTAAAGAAAGTGATG+AGG 0.601536 1.4:-20578902 MS.gene052831:CDS
TGGTGGTTGGAAAATATTCA+GGG 0.603185 1.4:-20578123 MS.gene052831:CDS
ATGACACAATCTTACACCAA+TGG 0.609025 1.4:-20578361 MS.gene052831:CDS
TATGCAGAGAAATATTGGAA+AGG 0.611326 1.4:-20579174 MS.gene052831:CDS
GGTTGGTAATGAAAGGAGTG+TGG 0.615653 1.4:-20578192 MS.gene052831:CDS
ATGAGAGTATTCGTGGCTGT+AGG 0.616385 1.4:-20577457 MS.gene052831:CDS
TGGTAATGAAAGGAGTGTGG+AGG 0.642373 1.4:-20578189 MS.gene052831:CDS
TGTTCTCTTGAAAACTCACA+TGG 0.651484 1.4:+20578248 None:intergenic
AAATGCCAAAGAAAGCTCAA+AGG 0.663329 1.4:-20578831 MS.gene052831:CDS
ATTCATGAAAGAATGCAATG+TGG 0.699756 1.4:-20577414 MS.gene052831:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATTTATGATAAAAAATT+TGG - chr1.4:20578109-20578128 MS.gene052831:CDS 10.0%
!!! ATAATTTATTTCTAAAGTAT+TGG + chr1.4:20577710-20577729 None:intergenic 10.0%
!! AATATTATTCTATGAAAATC+TGG + chr1.4:20577346-20577365 None:intergenic 15.0%
!! ATTATATCTTTAAACTTTAC+AGG - chr1.4:20578204-20578223 MS.gene052831:CDS 15.0%
!!! AAATATGTTTTTTTTATGGA+AGG - chr1.4:20578069-20578088 MS.gene052831:CDS 15.0%
!!! CAAATATCTCTAAATTTTTT+GGG - chr1.4:20578894-20578913 MS.gene052831:CDS 15.0%
!!! TATTTTAAGGTTAAGATATT+TGG - chr1.4:20577682-20577701 MS.gene052831:CDS 15.0%
!!! TCAAATATCTCTAAATTTTT+TGG - chr1.4:20578893-20578912 MS.gene052831:CDS 15.0%
!!! TGTTGAACAAAAAATATTTT+GGG - chr1.4:20577558-20577577 MS.gene052831:intron 15.0%
!! AAATATTGTGGAGTTAAAAA+TGG - chr1.4:20579160-20579179 MS.gene052831:CDS 20.0%
!! AATATTGTGGAGTTAAAAAT+GGG - chr1.4:20579161-20579180 MS.gene052831:CDS 20.0%
!! AGAAATCATACATTAACAAT+AGG + chr1.4:20577447-20577466 None:intergenic 20.0%
!! ATATTCCTTAAATTTCCAAA+CGG - chr1.4:20577535-20577554 MS.gene052831:CDS 20.0%
!! ATGAAAAAGGTTATAAGAAA+GGG - chr1.4:20578747-20578766 MS.gene052831:intron 20.0%
!! GAAATCATACATTAACAATA+GGG + chr1.4:20577446-20577465 None:intergenic 20.0%
!! TAAACATACAATATACAGTT+AGG + chr1.4:20578837-20578856 None:intergenic 20.0%
!! TATGAAAAAGGTTATAAGAA+AGG - chr1.4:20578746-20578765 MS.gene052831:intron 20.0%
!! TTATAAAGAAAGATCTTGTT+TGG - chr1.4:20578526-20578545 MS.gene052831:intron 20.0%
!! TTGGAAATTTAAGGAATATA+GGG + chr1.4:20577534-20577553 None:intergenic 20.0%
!! TTTGGAAATTTAAGGAATAT+AGG + chr1.4:20577535-20577554 None:intergenic 20.0%
!!! ATATTTGGTTTCAAAAGAAT+TGG - chr1.4:20577596-20577615 MS.gene052831:intron 20.0%
!!! GTGTTGAACAAAAAATATTT+TGG - chr1.4:20577557-20577576 MS.gene052831:intron 20.0%
!!! TAAATCATTATTTGAAACAG+TGG - chr1.4:20578399-20578418 MS.gene052831:CDS 20.0%
!!! TATAAAGAAAGATCTTGTTT+GGG - chr1.4:20578527-20578546 MS.gene052831:intron 20.0%
!!! TATTTGGTTTCAAAAGAATT+GGG - chr1.4:20577597-20577616 MS.gene052831:intron 20.0%
!!! TTTTATGTAATTAATCCTAC+CGG + chr1.4:20579030-20579049 None:intergenic 20.0%
! AAGAGATATCCATATTTGAA+AGG + chr1.4:20577637-20577656 None:intergenic 25.0%
! AGAAATATGCAGAGAAATAT+TGG - chr1.4:20577494-20577513 MS.gene052831:CDS 25.0%
! ATATTGTGGAGTTAAAAATG+GGG - chr1.4:20579162-20579181 MS.gene052831:CDS 25.0%
! ATTGTGACAATGAATGAAAA+AGG + chr1.4:20578632-20578651 None:intergenic 25.0%
! CTCTTAACTTTCAAATTCAT+TGG - chr1.4:20577652-20577671 MS.gene052831:intron 25.0%
! GTCATTATAACTTCAAAAGA+GGG + chr1.4:20578297-20578316 None:intergenic 25.0%
! TAAAACCTAGTAGTTTCTTT+GGG + chr1.4:20578679-20578698 None:intergenic 25.0%
! TATTTCTCTGCATATTTCTT+AGG + chr1.4:20577493-20577512 None:intergenic 25.0%
! TGAAAAAGGTTATAAGAAAG+GGG - chr1.4:20578748-20578767 MS.gene052831:intron 25.0%
! TGTCATTATAACTTCAAAAG+AGG + chr1.4:20578298-20578317 None:intergenic 25.0%
! TTAAAACCTAGTAGTTTCTT+TGG + chr1.4:20578680-20578699 None:intergenic 25.0%
! TTAACTTTCAAATTCATTGG+TGG - chr1.4:20577655-20577674 MS.gene052831:intron 25.0%
! TTTATGTAATTAATCCTACC+GGG + chr1.4:20579029-20579048 None:intergenic 25.0%
!! GAACACTTGAAAGATTTTAA+TGG - chr1.4:20578443-20578462 MS.gene052831:CDS 25.0%
!! TCTTTAGGTTAATTGATGAA+AGG - chr1.4:20579300-20579319 MS.gene052831:intron 25.0%
!!! AACTTTTAAGAGTTATTCCA+TGG - chr1.4:20577947-20577966 MS.gene052831:intron 25.0%
!!! TGAACAAAAAATATTTTGGG+TGG - chr1.4:20577561-20577580 MS.gene052831:intron 25.0%
AAAGCTCAAAGGACAATAAA+TGG - chr1.4:20577853-20577872 MS.gene052831:intron 30.0%
AGGATGTCATGAAAATATTG+TGG - chr1.4:20579148-20579167 MS.gene052831:CDS 30.0%
ATTCATGAAAGAATGCAATG+TGG - chr1.4:20579259-20579278 MS.gene052831:intron 30.0%
CCAAAGGAATTTATGAAAAG+AGG - chr1.4:20579128-20579147 MS.gene052831:CDS 30.0%
CTAAAAAAGAAACTGAATCC+TGG + chr1.4:20578807-20578826 None:intergenic 30.0%
GAAAAAATCACAACAAACCA+TGG + chr1.4:20577967-20577986 None:intergenic 30.0%
GATGAAACATAACACATTCA+AGG - chr1.4:20578984-20579003 MS.gene052831:CDS 30.0%
TAATGGAACTGCAACAATAA+GGG - chr1.4:20578460-20578479 MS.gene052831:intron 30.0%
TATGCAGAGAAATATTGGAA+AGG - chr1.4:20577499-20577518 MS.gene052831:CDS 30.0%
TCTGAAAGCTTGTAAATCTA+AGG - chr1.4:20577987-20578006 MS.gene052831:intron 30.0%
TTAATGGAACTGCAACAATA+AGG - chr1.4:20578459-20578478 MS.gene052831:intron 30.0%
TTATGTAATTAATCCTACCG+GGG + chr1.4:20579028-20579047 None:intergenic 30.0%
TTTGCAAAGCCTTTCAAATA+TGG - chr1.4:20577625-20577644 MS.gene052831:intron 30.0%
! ACATAACACATTCAAGGTTT+TGG - chr1.4:20578990-20579009 MS.gene052831:CDS 30.0%
! AGTGTCTTGAAAATCGTTTT+TGG - chr1.4:20578019-20578038 MS.gene052831:CDS 30.0%
! CCTCTTTTCATAAATTCCTT+TGG + chr1.4:20579131-20579150 None:intergenic 30.0%
! GTAAATTTGAGATGATTCGA+CGG - chr1.4:20578603-20578622 MS.gene052831:intron 30.0%
!! AACTATTATGAGAGTATTCG+TGG - chr1.4:20579209-20579228 MS.gene052831:intron 30.0%
!! AATATCAAAGCAGTTGATGA+AGG - chr1.4:20577733-20577752 MS.gene052831:intron 30.0%
!! CATTGGTGGATCATATTTTA+AGG - chr1.4:20577669-20577688 MS.gene052831:CDS 30.0%
!!! ATTTTTTGTTCAACACCGTT+TGG + chr1.4:20577553-20577572 None:intergenic 30.0%
AAAGAATGCAATGTGGAGAT+TGG - chr1.4:20579266-20579285 MS.gene052831:intron 35.0%
AAATGCCAAAGAAAGCTCAA+AGG - chr1.4:20577842-20577861 MS.gene052831:intron 35.0%
AACTGAATCCTGGATAACTT+AGG + chr1.4:20578797-20578816 None:intergenic 35.0%
AAGTGATGAAGAGAGTGATA+AGG - chr1.4:20577816-20577835 MS.gene052831:intron 35.0%
AATGGCAAGAGAAAATTCTC+AGG - chr1.4:20577871-20577890 MS.gene052831:intron 35.0%
ACTTACCAAGAAATAGCCAT+TGG + chr1.4:20578331-20578350 None:intergenic 35.0%
ACTTTCTTTACCTTCTTCAG+TGG + chr1.4:20577767-20577786 None:intergenic 35.0%
AGAAGGTAAAGAAAGTGATG+AGG - chr1.4:20577771-20577790 MS.gene052831:intron 35.0%
ATGACACAATCTTACACCAA+TGG - chr1.4:20578312-20578331 MS.gene052831:intron 35.0%
ATTGTCCTTTGAGCTTTCTT+TGG + chr1.4:20577850-20577869 None:intergenic 35.0%
CAACACCGTTTGGAAATTTA+AGG + chr1.4:20577543-20577562 None:intergenic 35.0%
CAATTAGCTGTGCTTCTTTA+AGG - chr1.4:20579342-20579361 MS.gene052831:CDS 35.0%
CATTAACAGCTTCAGATGTT+TGG + chr1.4:20578269-20578288 None:intergenic 35.0%
CTGAATTTCTTTGTTGCAGA+GGG - chr1.4:20577465-20577484 MS.gene052831:CDS 35.0%
CTTTACAGGTTGTAACAAAG+TGG - chr1.4:20578218-20578237 MS.gene052831:CDS 35.0%
GAAAATTCTCAGGTGAGTTT+AGG - chr1.4:20577881-20577900 MS.gene052831:intron 35.0%
GTGTTATGTTTCATCACATC+AGG + chr1.4:20578979-20578998 None:intergenic 35.0%
GTTTATGCCTATTGTACAGA+AGG - chr1.4:20578952-20578971 MS.gene052831:CDS 35.0%
TAAAAATGGGGAGAAAGTCA+TGG - chr1.4:20579174-20579193 MS.gene052831:CDS 35.0%
TCTGAATTTCTTTGTTGCAG+AGG - chr1.4:20577464-20577483 MS.gene052831:CDS 35.0%
TGGAGAGTAATGGTGATATT+TGG - chr1.4:20577581-20577600 MS.gene052831:intron 35.0%
TGGTGGTTGGAAAATATTCA+GGG - chr1.4:20578550-20578569 MS.gene052831:intron 35.0%
TGTTCTCTTGAAAACTCACA+TGG + chr1.4:20578428-20578447 None:intergenic 35.0%
TTGGAGATACTTGTCTCTTT+AGG - chr1.4:20579285-20579304 MS.gene052831:intron 35.0%
! AAAGAAAGATCTTGTTTGGG+TGG - chr1.4:20578530-20578549 MS.gene052831:intron 35.0%
!! ATATTTTGGGTGGAGAGTAA+TGG - chr1.4:20577571-20577590 MS.gene052831:intron 35.0%
!! CAATAAGGGTTGGTAATGAA+AGG - chr1.4:20578474-20578493 MS.gene052831:intron 35.0%
!! GAGGTTAGTTTGAGGTATTA+TGG - chr1.4:20578503-20578522 MS.gene052831:intron 35.0%
!! TTACACCAATGGCTATTTCT+TGG - chr1.4:20578323-20578342 MS.gene052831:intron 35.0%
ACTTTCTTCACCTTCTTCAG+TGG + chr1.4:20577800-20577819 None:intergenic 40.0%
ATCAGGACCTTCTGTACAAT+AGG + chr1.4:20578962-20578981 None:intergenic 40.0%
ATTGTCACAATTACTCGTGC+CGG - chr1.4:20578641-20578660 MS.gene052831:intron 40.0%
GAGAAAGTCATGGTTCGTAA+AGG - chr1.4:20579184-20579203 MS.gene052831:CDS 40.0%
GCAATCCCAAAGAAACTACT+AGG - chr1.4:20578671-20578690 MS.gene052831:intron 40.0%
GTATTTGCAGAGTGTACCAA+AGG - chr1.4:20579112-20579131 MS.gene052831:CDS 40.0%
GTGGTGGTTGGAAAATATTC+AGG - chr1.4:20578549-20578568 MS.gene052831:intron 40.0%
GTTAGTAGCCTAAGTTATCC+AGG - chr1.4:20578786-20578805 MS.gene052831:intron 40.0%
!! TTTTCTAGCCTTCTTCACCA+TGG + chr1.4:20578244-20578263 None:intergenic 40.0%
AGGTTGTAACAAAGTGGCCA+TGG - chr1.4:20578224-20578243 MS.gene052831:CDS 45.0%
AGTATTCGTGGCTGTAGGTT+CGG - chr1.4:20579221-20579240 MS.gene052831:intron 45.0%
GGAACTGCAACAATAAGGGT+TGG - chr1.4:20578464-20578483 MS.gene052831:intron 45.0%
! GAAAGATCTTGTTTGGGTGG+TGG - chr1.4:20578533-20578552 MS.gene052831:intron 45.0%
! GCTGTAGGTTCGGTAAAGAT+TGG - chr1.4:20579231-20579250 MS.gene052831:intron 45.0%
! TGGTAATGAAAGGAGTGTGG+AGG - chr1.4:20578484-20578503 MS.gene052831:intron 45.0%
!! ATGAGAGTATTCGTGGCTGT+AGG - chr1.4:20579216-20579235 MS.gene052831:intron 45.0%
!! CTTTGGGATTGCTTCGTTTC+CGG + chr1.4:20578663-20578682 None:intergenic 45.0%
!! GGTTGGTAATGAAAGGAGTG+TGG - chr1.4:20578481-20578500 MS.gene052831:intron 45.0%
!!! ATAAAAATATGTTTTTTTTA+TGG - chr1.4:20578065-20578084 MS.gene052831:CDS 5.0%
!!! TTATAATTTTTTTATGAAAA+AGG - chr1.4:20578734-20578753 MS.gene052831:intron 5.0%
CAAAGTGGCCATGGTGAAGA+AGG - chr1.4:20578233-20578252 MS.gene052831:CDS 50.0%
GATGAGGAAGCCACTGAAGA+AGG - chr1.4:20577787-20577806 MS.gene052831:intron 50.0%
TTTGGTGAAGAACACAGCCC+CGG - chr1.4:20579008-20579027 MS.gene052831:CDS 50.0%
! GATCTTGTTTGGGTGGTGGT+TGG - chr1.4:20578537-20578556 MS.gene052831:intron 50.0%
!! GGAGTGTGGAGGTTAGTTTG+AGG - chr1.4:20578495-20578514 MS.gene052831:intron 50.0%
! GGTGCTGAAGCCACTGAAGA+AGG - chr1.4:20577754-20577773 MS.gene052831:intron 55.0%
GTGAAGAACACAGCCCCGGT+AGG - chr1.4:20579012-20579031 MS.gene052831:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 20577325 20579370 20577325 ID=MS.gene052831
chr1.4 mRNA 20577325 20579370 20577325 ID=MS.gene052831.t1;Parent=MS.gene052831
chr1.4 exon 20579314 20579370 20579314 ID=MS.gene052831.t1.exon1;Parent=MS.gene052831.t1
chr1.4 CDS 20579314 20579370 20579314 ID=cds.MS.gene052831.t1;Parent=MS.gene052831.t1
chr1.4 exon 20578803 20579211 20578803 ID=MS.gene052831.t1.exon2;Parent=MS.gene052831.t1
chr1.4 CDS 20578803 20579211 20578803 ID=cds.MS.gene052831.t1;Parent=MS.gene052831.t1
chr1.4 exon 20578351 20578469 20578351 ID=MS.gene052831.t1.exon3;Parent=MS.gene052831.t1
chr1.4 CDS 20578351 20578469 20578351 ID=cds.MS.gene052831.t1;Parent=MS.gene052831.t1
chr1.4 exon 20578003 20578276 20578003 ID=MS.gene052831.t1.exon4;Parent=MS.gene052831.t1
chr1.4 CDS 20578003 20578276 20578003 ID=cds.MS.gene052831.t1;Parent=MS.gene052831.t1
chr1.4 exon 20577666 20577724 20577666 ID=MS.gene052831.t1.exon5;Parent=MS.gene052831.t1
chr1.4 CDS 20577666 20577724 20577666 ID=cds.MS.gene052831.t1;Parent=MS.gene052831.t1
chr1.4 exon 20577325 20577573 20577325 ID=MS.gene052831.t1.exon6;Parent=MS.gene052831.t1
chr1.4 CDS 20577325 20577573 20577325 ID=cds.MS.gene052831.t1;Parent=MS.gene052831.t1
Gene Sequence

>MS.gene052831

ATGTCATTTCAACATGTTCCAGATTTTCATAGAATAATATTGCAAGATAAGAAACTTGTAAGTCTATTACAAATAATTATATTGCATATTTTATATTATGTTTCATTTATGCTGTAAACCCTATTGTTAATGTATGATTTCTGAATTTCTTTGTTGCAGAGGGTTCCTAAGAAATATGCAGAGAAATATTGGAAAGGAATGTCAAACCCTATATTCCTTAAATTTCCAAACGGTGTTGAACAAAAAATATTTTGGGTGGAGAGTAATGGTGATATTTGGTTTCAAAAGAATTGGGAAAGTTTTGCAAAGCCTTTCAAATATGGATATCTCTTAACTTTCAAATTCATTGGTGGATCATATTTTAAGGTTAAGATATTTGGTGCCAATACTTTAGAAATAAATTATGCAAATATCAAAGCAGTTGATGAAGGTGCTGAAGCCACTGAAGAAGGTAAAGAAAGTGATGAGGAAGCCACTGAAGAAGGTGAAGAAAGTGATGAAGAGAGTGATAAGGTTGAAATGCCAAAGAAAGCTCAAAGGACAATAAATGGCAAGAGAAAATTCTCAGGTGAGTTTAGGCTTGTCTGTTACTCTATTTATTTTTTAAAAAATAATTGCTTTTAACTTTTAAGAGTTATTCCATGGTTTGTTGTGATTTTTTCTCTGAAAGCTTGTAAATCTAAGGAAGAAAAAAAGTGTCTTGAAAATCGTTTTTGGAAGCATTGTTAGATACTTTTTCTATAAAAATATGTTTTTTTTATGGAAGGAAAAATATGTGATTTTTATCATTTATGATAAAAAATTTGGTTTTTTAAAATCGTTTGAAAATAATCTCTAAATCAAATGTATGATAAATAGTTAACGCAAACAAAATAGATCATTATATCTTTAAACTTTACAGGTTGTAACAAAGTGGCCATGGTGAAGAAGGCTAGAAAATACCAAACATCTGAAGCTGTTAATGAGAATCCCTCTTTTGAAGTTATAATGACACAATCTTACACCAATGGCTATTTCTTGGTAAGTTTTCTATACAAAGTATCTAATAATTTTAGCTTTAATTAATATCTCTAATAAATCATTATTTGAAACAGTGGTTACCATGTGAGTTTTCAAGAGAACACTTGAAAGATTTTAATGGAACTGCAACAATAAGGGTTGGTAATGAAAGGAGTGTGGAGGTTAGTTTGAGGTATTATGGTTATAAAGAAAGATCTTGTTTGGGTGGTGGTTGGAAAATATTCAGGGAAAAATATAATTTGCAAGTTGACGATGTTTGTAAATTTGAGATGATTCGACGGAGACCTTTTTCATTCATTGTCACAATTACTCGTGCCGGAAACGAAGCAATCCCAAAGAAACTACTAGGTTTTAATTCTTTCTTTCTCTTTTATTTGCTTTTTTGTATGTTATAATTTTTTTATGAAAAAGGTTATAAGAAAGGGGTCTCTTTTTTCAGTAGTTAGTAGCCTAAGTTATCCAGGATTCAGTTTCTTTTTTAGTTTAAAACCTAACTGTATATTGTATGTTTAAGTTCATACTTGAAATTTTTTAGCTCAAAAATAAATTCAAATATCTCTAAATTTTTTGGGTATTATGAAAATTAGATTAGATGATATCATTTTGTGTTTATGCCTATTGTACAGAAGGTCCTGATGTGATGAAACATAACACATTCAAGGTTTTGGTGAAGAACACAGCCCCGGTAGGATTAATTACATAAAATATAGTTACATATATAGATAGAGATGTTAGAACTACAAAATAAATAAATGATATTTTTGTTTGTATTTGCAGAGTGTACCAAAGGAATTTATGAAAAGAGGATGTCATGAAAATATTGTGGAGTTAAAAATGGGGAGAAAGTCATGGTTCGTAAAGGTGAACTATTATGAGAGTATTCGTGGCTGTAGGTTCGGTAAAGATTGGATAAAATTCATGAAAGAATGCAATGTGGAGATTGGAGATACTTGTCTCTTTAGGTTAATTGATGAAAGGAAATTTGTGTTTGATGTTTCAATTAGCTGTGCTTCTTTAAGGCACTAA
Protein sequence

>MS.gene052831.t1

MSFQHVPDFHRIILQDKKLRVPKKYAEKYWKGMSNPIFLKFPNGVEQKIFWVESNGDIWFQKNWESFAKPFKYGYLLTFKFIGGSYFKVKIFGANTLEINYANIKAVDEGAEATEEGKESDEEATEEGEESDEESDKVEMPKKAQRTINGKRKFSGCNKVAMVKKARKYQTSEAVNENPSFEVIMTQSYTNGYFLWLPCEFSREHLKDFNGTATIRVGNERSVEVSLRYYGYKERSCLGGGWKIFREKYNLQVDDVCKFEMIRRRPFSFIVTITRAGNEAIPKKLLEGPDVMKHNTFKVLVKNTAPSVPKEFMKRGCHENIVELKMGRKSWFVKVNYYESIRGCRFGKDWIKFMKECNVEIGDTCLFRLIDERKFVFDVSISCASLRH