AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054682

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054682.t1 MTR_5g044670 86.000 350 29 1 1 350 1 330 0.0 616
MS.gene054682.t1 MTR_3g098790 32.919 322 181 9 16 330 13 306 2.22e-47 163
MS.gene054682.t1 MTR_7g050710 32.399 321 184 8 16 326 13 310 9.64e-47 161
MS.gene054682.t1 MTR_8g103940 30.178 338 198 6 2 329 28 337 1.34e-46 165
MS.gene054682.t1 MTR_7g050720 33.232 328 181 12 16 325 10 317 1.09e-44 156
MS.gene054682.t1 MTR_1g108780 30.960 323 177 9 32 338 13 305 2.10e-43 156
MS.gene054682.t1 MTR_7g050580 31.988 322 175 7 16 330 13 297 4.75e-42 149
MS.gene054682.t1 MTR_7g050560 28.882 322 185 8 16 330 13 297 1.81e-40 145
MS.gene054682.t1 MTR_6g061070 30.986 355 216 11 5 345 3 342 3.41e-40 147
MS.gene054682.t1 MTR_1g035640 33.333 306 160 11 25 324 14 281 4.77e-40 147
MS.gene054682.t1 MTR_7g050590 28.707 317 179 6 31 330 1 287 1.32e-39 142
MS.gene054682.t1 MTR_3g061350 30.392 306 179 8 16 321 12 283 1.12e-38 139
MS.gene054682.t1 MTR_3g061370 28.435 313 176 7 16 321 9 280 1.22e-36 134
MS.gene054682.t1 MTR_4g119990 29.912 341 214 12 1 334 1 323 5.41e-36 134
MS.gene054682.t1 MTR_1g035460 29.283 321 191 9 31 336 1 300 2.17e-35 133
MS.gene054682.t1 MTR_3g061310 28.571 315 174 8 16 321 12 284 1.33e-34 128
MS.gene054682.t1 MTR_6g043890 29.375 320 186 8 1 309 1 291 4.02e-34 129
MS.gene054682.t1 MTR_3g061340 27.184 309 177 10 16 322 12 274 4.58e-34 127
MS.gene054682.t1 MTR_1g035570 29.904 311 177 9 25 327 14 291 6.21e-34 129
MS.gene054682.t1 MTR_1g035620 29.395 347 192 9 10 348 3 304 9.16e-34 129
MS.gene054682.t1 MTR_3g061320 28.431 306 180 6 16 321 12 278 4.77e-33 124
MS.gene054682.t1 MTR_3g061330 27.798 277 160 8 16 289 12 251 4.40e-32 120
MS.gene054682.t1 MTR_1g050845 28.696 345 185 11 10 348 3 292 5.29e-29 118
MS.gene054682.t1 MTR_1g035520 27.244 312 204 8 25 322 81 383 3.88e-28 113
MS.gene054682.t1 MTR_3g061290 35.758 165 88 4 16 173 12 165 2.81e-27 107
MS.gene054682.t1 MTR_3g005460 27.950 322 158 10 16 326 262 520 4.11e-27 112
MS.gene054682.t1 MTR_3g005460 31.944 144 95 3 2 144 12 153 6.48e-17 82.0
MS.gene054682.t1 MTR_1g035650 31.818 242 117 7 10 244 3 203 2.48e-25 101
MS.gene054682.t1 MTR_3g005490 25.000 316 164 8 13 326 18 262 9.84e-25 101
MS.gene054682.t1 MTR_1g035480 38.806 134 76 3 16 149 17 144 1.66e-24 99.0
MS.gene054682.t1 MTR_7g050640 44.660 103 53 1 7 109 8 106 4.99e-24 95.5
MS.gene054682.t1 MTR_5g070440 23.975 317 177 7 12 326 17 271 1.69e-23 98.6
MS.gene054682.t1 MTR_3g005480 23.175 315 166 7 16 326 21 263 1.71e-23 98.2
MS.gene054682.t1 MTR_1g033740 32.203 177 96 5 16 189 22 177 5.94e-23 95.1
MS.gene054682.t1 MTR_3g005420 24.451 319 179 7 9 326 282 539 1.05e-22 99.4
MS.gene054682.t1 MTR_3g005420 32.787 122 80 2 16 136 40 160 9.21e-16 78.6
MS.gene054682.t1 MTR_1g034240 35.938 128 82 0 16 143 7 134 3.36e-22 97.4
MS.gene054682.t1 MTR_1g034240 29.054 148 87 5 198 330 255 399 7.45e-11 63.5
MS.gene054682.t1 MTR_3g005495 31.915 188 120 4 9 192 236 419 3.08e-21 94.7
MS.gene054682.t1 MTR_3g005495 33.735 83 55 0 32 114 29 111 1.30e-14 75.1
MS.gene054682.t1 MTR_4g068320 34.483 145 94 1 13 157 3 146 6.67e-21 93.6
MS.gene054682.t1 MTR_1g035500 29.944 177 101 5 16 189 25 181 7.83e-21 89.0
MS.gene054682.t1 MTR_1g021360 23.871 310 197 7 27 326 193 473 1.76e-20 92.4
MS.gene054682.t1 MTR_1g035510 43.103 116 58 4 31 146 1 108 7.17e-19 84.7
MS.gene054682.t1 MTR_1g021330 22.985 335 228 10 17 322 26 359 7.65e-19 87.0
MS.gene054682.t1 MTR_1g034210 39.796 98 59 0 16 113 7 104 9.97e-19 85.9
MS.gene054682.t1 MTR_1g021400 24.233 326 214 11 27 329 41 356 1.12e-18 86.7
MS.gene054682.t1 MTR_1g034210 39.796 98 59 0 16 113 7 104 1.94e-18 85.9
MS.gene054682.t1 MTR_1g035470 38.793 116 64 4 31 146 1 109 3.05e-18 80.5
MS.gene054682.t1 MTR_3g061220 34.746 118 60 3 16 133 12 112 7.09e-18 79.0
MS.gene054682.t1 MTR_1g021410 22.857 315 221 7 27 322 33 344 1.89e-16 79.7
MS.gene054682.t1 MTR_3g005420 32.800 125 82 2 13 136 18 141 8.12e-16 78.6
MS.gene054682.t1 MTR_1g035440 37.000 100 62 1 16 114 15 114 1.68e-15 75.5
MS.gene054682.t1 MTR_1g021380 25.000 324 207 10 17 321 22 328 5.03e-15 75.5
MS.gene054682.t1 MTR_1g021435 24.465 327 208 12 27 321 33 352 7.44e-15 75.1
MS.gene054682.t1 MTR_3g005440 36.471 85 54 0 30 114 34 118 1.29e-14 75.1
MS.gene054682.t1 MTR_3g005440 32.407 108 72 1 20 127 246 352 1.49e-13 71.6
MS.gene054682.t1 MTR_1g021350 20.988 324 209 9 17 319 22 319 1.39e-13 71.2
MS.gene054682.t1 MTR_1g021440 35.556 90 58 0 17 106 23 112 2.26e-13 70.1
MS.gene054682.t1 MTR_1g035490 32.787 122 77 3 225 344 97 215 2.53e-13 70.5
MS.gene054682.t1 MTR_1g021440 35.556 90 58 0 17 106 23 112 3.11e-13 69.7
MS.gene054682.t1 MTR_1g021440 35.556 90 58 0 17 106 23 112 5.15e-13 70.1
MS.gene054682.t1 MTR_1g021440 35.556 90 58 0 17 106 23 112 5.72e-13 69.7
MS.gene054682.t1 MTR_1g021320 38.750 80 49 0 27 106 193 272 2.19e-12 68.6
MS.gene054682.t1 MTR_1g021320 33.333 90 60 0 16 105 25 114 3.17e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054682.t1 AT3G18990 30.086 349 191 11 16 326 6 339 7.10e-37 137
MS.gene054682.t1 AT3G18990 29.799 349 192 11 16 326 6 339 1.64e-36 135
MS.gene054682.t1 AT4G01580 38.776 147 74 4 16 161 30 161 6.53e-22 92.0
MS.gene054682.t1 AT3G18960 41.284 109 59 1 16 124 30 133 6.76e-20 86.7
MS.gene054682.t1 AT3G18960 42.424 99 57 0 16 114 30 128 9.06e-20 86.7
MS.gene054682.t1 AT1G49475 34.615 156 91 3 16 166 34 183 1.11e-19 85.9
MS.gene054682.t1 AT3G18960 41.935 93 49 1 32 124 9 96 9.68e-16 74.7
MS.gene054682.t1 AT4G33280 22.772 303 211 6 30 326 37 322 1.31e-14 74.3
MS.gene054682.t1 AT1G49480 31.624 117 69 4 217 326 112 224 2.82e-12 65.9
MS.gene054682.t1 AT1G49480 31.624 117 69 4 217 326 112 224 2.82e-12 65.9
MS.gene054682.t1 AT1G49480 31.624 117 69 4 217 326 112 224 2.82e-12 65.9
MS.gene054682.t1 AT5G09780 23.692 325 199 12 11 319 14 305 1.49e-11 65.1

Find 60 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTACCAAATGGTGATAAA+TGG 0.158299 5.3:+32303699 MS.gene054682:CDS
AGCATTGAACTTGAAGTTTA+AGG 0.206027 5.3:-32304706 None:intergenic
CTTTCCATTCAAATACTCTT+TGG 0.236141 5.3:-32304637 None:intergenic
GTGATAAATGGGAAGTAAAT+TGG 0.244779 5.3:+32303711 MS.gene054682:CDS
GCGCTTTGGAAATGGATTAT+TGG 0.263628 5.3:+32303870 MS.gene054682:CDS
AGACGATTATATTGAGATTT+CGG 0.264534 5.3:+32303967 MS.gene054682:CDS
ATGCAACGGACGAATGAAAA+AGG 0.295165 5.3:-32304326 None:intergenic
TTTGGTAGAACTAGGGTTAC+TGG 0.318076 5.3:-32303686 None:intergenic
AAACACTACAAAATACTAAA+AGG 0.340468 5.3:+32304275 MS.gene054682:CDS
TTTCTTTCAACTTGATCTCT+AGG 0.366619 5.3:-32303905 None:intergenic
CATCAAATGAAGCTATGAAT+TGG 0.370847 5.3:+32304248 MS.gene054682:CDS
TCAACTTGATCTCTAGGGCT+TGG 0.372702 5.3:-32303899 None:intergenic
GATATTTGACAAAAGCGCTT+TGG 0.378554 5.3:+32303856 MS.gene054682:CDS
CAACACTATTCAATGAGTTA+TGG 0.379815 5.3:+32303785 MS.gene054682:CDS
TGACAAAAGCGCTTTGGAAA+TGG 0.381408 5.3:+32303862 MS.gene054682:CDS
CCATGACGTGTGGTTTCAAA+AGG 0.387206 5.3:+32303745 MS.gene054682:CDS
AACACTATTCAATGAGTTAT+GGG 0.394195 5.3:+32303786 MS.gene054682:CDS
GAGGAATATAATTTCAAAGT+TGG 0.395164 5.3:+32304774 MS.gene054682:CDS
TTTACAATTTCAGGAGGTAA+TGG 0.402632 5.3:+32304196 MS.gene054682:intron
TCTAGCTCCGCGCACTTTCA+AGG 0.407616 5.3:+32304873 MS.gene054682:CDS
CCTTTGAGATGGACCATCAC+TGG 0.419968 5.3:-32304044 None:intergenic
TCCATCCTACCTTGAACATA+TGG 0.422875 5.3:+32304348 MS.gene054682:CDS
ACTTCCCATTTATCACCATT+TGG 0.427050 5.3:-32303704 None:intergenic
GGGATTGCAACCGTGGTGTT+TGG 0.435175 5.3:+32304663 MS.gene054682:CDS
AGTTATGAGTGCTCGATTAG+TGG 0.441965 5.3:-32304730 None:intergenic
TCTACCAAATGGTGATAAAT+GGG 0.445463 5.3:+32303700 MS.gene054682:CDS
TTCTTTCAACTTGATCTCTA+GGG 0.452245 5.3:-32303904 None:intergenic
GAGTATTTGAATGGAAAGGA+TGG 0.463140 5.3:+32304642 MS.gene054682:CDS
AATCGAGCACTCATAACTTC+TGG 0.465532 5.3:+32304735 MS.gene054682:CDS
CAATGTAACAGATGATTCCT+AGG 0.470035 5.3:+32303627 MS.gene054682:intron
TATCACCATTTGGTAGAACT+AGG 0.471668 5.3:-32303694 None:intergenic
GTTATCGGAATGAAAATTCA+TGG 0.486333 5.3:-32304302 None:intergenic
CGTGTGGTTTCAAAAGGGTT+GGG 0.493190 5.3:+32303751 MS.gene054682:CDS
TATTTCTTCACAAAACTCCT+AGG 0.496072 5.3:-32303644 None:intergenic
ACGTGTGGTTTCAAAAGGGT+TGG 0.496889 5.3:+32303750 MS.gene054682:CDS
CAAAGAGTATTTGAATGGAA+AGG 0.500378 5.3:+32304638 MS.gene054682:CDS
TACTCTTTGGAAAACGATGT+TGG 0.517680 5.3:-32304624 None:intergenic
TTGGTAGAACTAGGGTTACT+GGG 0.523068 5.3:-32303685 None:intergenic
ATCACCATTTGGTAGAACTA+GGG 0.529841 5.3:-32303693 None:intergenic
ACCATATGTTCAAGGTAGGA+TGG 0.542632 5.3:-32304349 None:intergenic
GTAACCCTAGTTCTACCAAA+TGG 0.543476 5.3:+32303689 MS.gene054682:CDS
ATATAGATACCATATGTTCA+AGG 0.544245 5.3:-32304357 None:intergenic
AGTATTTGAATGGAAAGGAT+GGG 0.554047 5.3:+32304643 MS.gene054682:CDS
CGCGGAGCTAGATTGATCAC+TGG 0.561180 5.3:-32304862 None:intergenic
AAAAGAATGAAAACCAGTGA+TGG 0.566067 5.3:+32304031 MS.gene054682:CDS
AACCGTGGTGTTTGGTGATG+AGG 0.573245 5.3:+32304671 MS.gene054682:CDS
GAGCACTCATAACTTCTGGT+TGG 0.583650 5.3:+32304739 MS.gene054682:CDS
CTGGAAATCCTAAAATGAAG+AGG 0.585261 5.3:+32305146 MS.gene054682:CDS
CCAGTGATGGTCCATCTCAA+AGG 0.589884 5.3:+32304044 MS.gene054682:CDS
TGGTTGGAGACAAATTGTTG+AGG 0.606845 5.3:+32304755 MS.gene054682:CDS
AGATACCATATGTTCAAGGT+AGG 0.608884 5.3:-32304353 None:intergenic
TGGAACTGATGAACAACACT+CGG 0.613370 5.3:-32303409 None:intergenic
CATGACGTGTGGTTTCAAAA+GGG 0.630048 5.3:+32303746 MS.gene054682:CDS
TTTAATACCTTGAAAGTGCG+CGG 0.633523 5.3:-32304880 None:intergenic
CATGAAGATGCTGAAAAGAG+TGG 0.644431 5.3:+32303938 MS.gene054682:CDS
TCAAGGTAGGATGGATGCAA+CGG 0.653476 5.3:-32304340 None:intergenic
AAAGGATGGGATTGCAACCG+TGG 0.682554 5.3:+32304656 MS.gene054682:CDS
ATCCTCATCACCAAACACCA+CGG 0.689007 5.3:-32304673 None:intergenic
TTGGTGATGAGGATAAGACT+TGG 0.724527 5.3:+32304682 MS.gene054682:CDS
TAAAACGTGACCATGACGTG+TGG 0.763171 5.3:+32303735 MS.gene054682:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTAGAAAACTAAATAAA+AGG - chr5.3:32303508-32303527 None:intergenic 15.0%
!! TTAAACAATATAGTAAAATG+TGG - chr5.3:32304408-32304427 None:intergenic 15.0%
!!! AGTATTTTTTTTACAATTTC+AGG + chr5.3:32304187-32304206 MS.gene054682:intron 15.0%
!!! GTTTTCTACTTTAATATTTT+TGG + chr5.3:32303516-32303535 MS.gene054682:intron 15.0%
!!! TTAGTGAATTTATTTACTTT+TGG + chr5.3:32304521-32304540 MS.gene054682:intron 15.0%
!! AAACACTACAAAATACTAAA+AGG + chr5.3:32304275-32304294 MS.gene054682:CDS 20.0%
!! AAAGAAGGAAAAAATAAATG+TGG + chr5.3:32304075-32304094 MS.gene054682:CDS 20.0%
!! AAGGAATACATGAATTATAT+AGG - chr5.3:32304448-32304467 None:intergenic 20.0%
!! AATGTGGATAAAAAAATCAA+AGG + chr5.3:32304091-32304110 MS.gene054682:CDS 20.0%
!! ATCCATTTGCATATAAAAAA+TGG - chr5.3:32304958-32304977 None:intergenic 20.0%
!! TATGAATGTGTCTAAATAAA+AGG - chr5.3:32303548-32303567 None:intergenic 20.0%
!! TCTTGTGTTTAAATGATAAT+TGG + chr5.3:32304590-32304609 MS.gene054682:intron 20.0%
!!! AACAATATTGAGTTTTTCTT+TGG + chr5.3:32305050-32305069 MS.gene054682:intron 20.0%
!!! ATTTTTTTTACAATTTCAGG+AGG + chr5.3:32304190-32304209 MS.gene054682:intron 20.0%
!!! CATTTATTTTTTCCTTCTTT+AGG - chr5.3:32304075-32304094 None:intergenic 20.0%
!!! TACAATCTCTTTCTTTTTAA+GGG - chr5.3:32303473-32303492 None:intergenic 20.0%
!!! TTACAATCTCTTTCTTTTTA+AGG - chr5.3:32303474-32303493 None:intergenic 20.0%
!!! TTATAAAGCTTCCTTTAAAA+TGG - chr5.3:32304472-32304491 None:intergenic 20.0%
!!! TTCCATTTTTTATATGCAAA+TGG + chr5.3:32304953-32304972 MS.gene054682:intron 20.0%
! AACACTATTCAATGAGTTAT+GGG + chr5.3:32303786-32303805 MS.gene054682:CDS 25.0%
! ACAACATGATTTATAGTAGA+CGG - chr5.3:32305008-32305027 None:intergenic 25.0%
! AGACGATTATATTGAGATTT+CGG + chr5.3:32303967-32303986 MS.gene054682:CDS 25.0%
! ATATAGATACCATATGTTCA+AGG - chr5.3:32304360-32304379 None:intergenic 25.0%
! GAGGAATATAATTTCAAAGT+TGG + chr5.3:32304774-32304793 MS.gene054682:CDS 25.0%
! GAGGAGAATAATTAAAATGA+AGG - chr5.3:32304133-32304152 None:intergenic 25.0%
! GTAGCAATTTAACATTATGA+TGG - chr5.3:32304155-32304174 None:intergenic 25.0%
! TGAAAAAACATTGTGACTTA+TGG - chr5.3:32303432-32303451 None:intergenic 25.0%
! TTTATATGCAAATGGATGAA+AGG + chr5.3:32304961-32304980 MS.gene054682:intron 25.0%
!! ATGTGGAAATTGATTCTAAA+AGG - chr5.3:32304391-32304410 None:intergenic 25.0%
!! ATTGAGTTTTTCTTTGGTTA+CGG + chr5.3:32305056-32305075 MS.gene054682:intron 25.0%
!! TGTATTCCTTTCCATTTTAA+AGG + chr5.3:32304458-32304477 MS.gene054682:intron 25.0%
!!! CTTTTTTTTAGTGCTATTGT+TGG + chr5.3:32303569-32303588 MS.gene054682:intron 25.0%
!!! TAGTTTTTAGACTTGAAACA+AGG + chr5.3:32303816-32303835 MS.gene054682:CDS 25.0%
!!! TTTGATTTCCTCTTCATTTT+AGG - chr5.3:32305157-32305176 None:intergenic 25.0%
!!! TTTTCCAAAGAGTATTTGAA+TGG + chr5.3:32304633-32304652 MS.gene054682:CDS 25.0%
AAAAGAATGAAAACCAGTGA+TGG + chr5.3:32304031-32304050 MS.gene054682:CDS 30.0%
AGTATTTGAATGGAAAGGAT+GGG + chr5.3:32304643-32304662 MS.gene054682:CDS 30.0%
CAACACTATTCAATGAGTTA+TGG + chr5.3:32303785-32303804 MS.gene054682:CDS 30.0%
CAACATGATTTATAGTAGAC+GGG - chr5.3:32305007-32305026 None:intergenic 30.0%
CATCAAATGAAGCTATGAAT+TGG + chr5.3:32304248-32304267 MS.gene054682:CDS 30.0%
CTTTCCATTCAAATACTCTT+TGG - chr5.3:32304640-32304659 None:intergenic 30.0%
GCAATTTAACATTATGATGG+AGG - chr5.3:32304152-32304171 None:intergenic 30.0%
GTGATAAATGGGAAGTAAAT+TGG + chr5.3:32303711-32303730 MS.gene054682:CDS 30.0%
GTTATCGGAATGAAAATTCA+TGG - chr5.3:32304305-32304324 None:intergenic 30.0%
TATTTCTTCACAAAACTCCT+AGG - chr5.3:32303647-32303666 None:intergenic 30.0%
TCAAAGGAAAAACCTAAAGA+AGG + chr5.3:32304060-32304079 MS.gene054682:CDS 30.0%
TCTACCAAATGGTGATAAAT+GGG + chr5.3:32303700-32303719 MS.gene054682:CDS 30.0%
TTCTACCAAATGGTGATAAA+TGG + chr5.3:32303699-32303718 MS.gene054682:CDS 30.0%
TTCTTTCAACTTGATCTCTA+GGG - chr5.3:32303907-32303926 None:intergenic 30.0%
TTTACAATTTCAGGAGGTAA+TGG + chr5.3:32304196-32304215 MS.gene054682:intron 30.0%
TTTCTTTCAACTTGATCTCT+AGG - chr5.3:32303908-32303927 None:intergenic 30.0%
! AGCATTGAACTTGAAGTTTA+AGG - chr5.3:32304709-32304728 None:intergenic 30.0%
!! AAGCTTCCTTTAAAATGGAA+AGG - chr5.3:32304467-32304486 None:intergenic 30.0%
!! AGGAGTTTTGTGAAGAAATA+TGG + chr5.3:32303647-32303666 MS.gene054682:CDS 30.0%
!! CAAAGAGTATTTGAATGGAA+AGG + chr5.3:32304638-32304657 MS.gene054682:CDS 30.0%
!! GGAGTTTTGTGAAGAAATAT+GGG + chr5.3:32303648-32303667 MS.gene054682:CDS 30.0%
!! TTTAGGTTTTTCCTTTGAGA+TGG - chr5.3:32304058-32304077 None:intergenic 30.0%
ACGAATGAAAAAGGGGTTAT+CGG - chr5.3:32304320-32304339 None:intergenic 35.0%
ACTTCCCATTTATCACCATT+TGG - chr5.3:32303707-32303726 None:intergenic 35.0%
AGATACCATATGTTCAAGGT+AGG - chr5.3:32304356-32304375 None:intergenic 35.0%
ATCACCATTTGGTAGAACTA+GGG - chr5.3:32303696-32303715 None:intergenic 35.0%
CAATGTAACAGATGATTCCT+AGG + chr5.3:32303627-32303646 MS.gene054682:intron 35.0%
CTGGAAATCCTAAAATGAAG+AGG + chr5.3:32305146-32305165 MS.gene054682:CDS 35.0%
GAGTATTTGAATGGAAAGGA+TGG + chr5.3:32304642-32304661 MS.gene054682:CDS 35.0%
GTATGTATTCTTGCAGATTC+TGG + chr5.3:32305127-32305146 MS.gene054682:intron 35.0%
TATCACCATTTGGTAGAACT+AGG - chr5.3:32303697-32303716 None:intergenic 35.0%
! TACTCTTTGGAAAACGATGT+TGG - chr5.3:32304627-32304646 None:intergenic 35.0%
! TTTAATACCTTGAAAGTGCG+CGG - chr5.3:32304883-32304902 None:intergenic 35.0%
!! CTGGTTTTCATTCTTTTCTG+AGG - chr5.3:32304028-32304047 None:intergenic 35.0%
!! GATATTTGACAAAAGCGCTT+TGG + chr5.3:32303856-32303875 MS.gene054682:CDS 35.0%
AATCGAGCACTCATAACTTC+TGG + chr5.3:32304735-32304754 MS.gene054682:CDS 40.0%
ACCATATGTTCAAGGTAGGA+TGG - chr5.3:32304352-32304371 None:intergenic 40.0%
AGTTATGAGTGCTCGATTAG+TGG - chr5.3:32304733-32304752 None:intergenic 40.0%
ATGCAACGGACGAATGAAAA+AGG - chr5.3:32304329-32304348 None:intergenic 40.0%
CATGAAGATGCTGAAAAGAG+TGG + chr5.3:32303938-32303957 MS.gene054682:CDS 40.0%
CATGACGTGTGGTTTCAAAA+GGG + chr5.3:32303746-32303765 MS.gene054682:CDS 40.0%
TCCATCCTACCTTGAACATA+TGG + chr5.3:32304348-32304367 MS.gene054682:CDS 40.0%
TGCAACGGACGAATGAAAAA+GGG - chr5.3:32304328-32304347 None:intergenic 40.0%
TGGAACTGATGAACAACACT+CGG - chr5.3:32303412-32303431 None:intergenic 40.0%
TGGTTGGAGACAAATTGTTG+AGG + chr5.3:32304755-32304774 MS.gene054682:CDS 40.0%
TTGGTAGAACTAGGGTTACT+GGG - chr5.3:32303688-32303707 None:intergenic 40.0%
TTTGGTAGAACTAGGGTTAC+TGG - chr5.3:32303689-32303708 None:intergenic 40.0%
!! GCGCTTTGGAAATGGATTAT+TGG + chr5.3:32303870-32303889 MS.gene054682:CDS 40.0%
!! GTAACCCTAGTTCTACCAAA+TGG + chr5.3:32303689-32303708 MS.gene054682:CDS 40.0%
!! TGACAAAAGCGCTTTGGAAA+TGG + chr5.3:32303862-32303881 MS.gene054682:CDS 40.0%
!! TTGGTGATGAGGATAAGACT+TGG + chr5.3:32304682-32304701 MS.gene054682:CDS 40.0%
!!! TTCATTCTTTTCTGAGGTCG+AGG - chr5.3:32304022-32304041 None:intergenic 40.0%
ACGTGTGGTTTCAAAAGGGT+TGG + chr5.3:32303750-32303769 MS.gene054682:CDS 45.0%
ATCCTCATCACCAAACACCA+CGG - chr5.3:32304676-32304695 None:intergenic 45.0%
CCATGACGTGTGGTTTCAAA+AGG + chr5.3:32303745-32303764 MS.gene054682:CDS 45.0%
CGTGTGGTTTCAAAAGGGTT+GGG + chr5.3:32303751-32303770 MS.gene054682:CDS 45.0%
GAGCACTCATAACTTCTGGT+TGG + chr5.3:32304739-32304758 MS.gene054682:CDS 45.0%
GCAACGGACGAATGAAAAAG+GGG - chr5.3:32304327-32304346 None:intergenic 45.0%
TAAAACGTGACCATGACGTG+TGG + chr5.3:32303735-32303754 MS.gene054682:CDS 45.0%
TCAAGGTAGGATGGATGCAA+CGG - chr5.3:32304343-32304362 None:intergenic 45.0%
!! TCAACTTGATCTCTAGGGCT+TGG - chr5.3:32303902-32303921 None:intergenic 45.0%
!!! CCTTTTGAAACCACACGTCA+TGG - chr5.3:32303748-32303767 None:intergenic 45.0%
AAAGGATGGGATTGCAACCG+TGG + chr5.3:32304656-32304675 MS.gene054682:CDS 50.0%
CCAGTGATGGTCCATCTCAA+AGG + chr5.3:32304044-32304063 MS.gene054682:CDS 50.0%
!! AACCGTGGTGTTTGGTGATG+AGG + chr5.3:32304671-32304690 MS.gene054682:CDS 50.0%
!! CCTTTGAGATGGACCATCAC+TGG - chr5.3:32304047-32304066 None:intergenic 50.0%
CGCGGAGCTAGATTGATCAC+TGG - chr5.3:32304865-32304884 None:intergenic 55.0%
GGGATTGCAACCGTGGTGTT+TGG + chr5.3:32304663-32304682 MS.gene054682:CDS 55.0%
! TCTAGCTCCGCGCACTTTCA+AGG + chr5.3:32304873-32304892 MS.gene054682:CDS 55.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 32303400 32305192 32303400 ID=MS.gene054682
chr5.3 mRNA 32303400 32305192 32303400 ID=MS.gene054682.t1;Parent=MS.gene054682
chr5.3 exon 32303400 32303489 32303400 ID=MS.gene054682.t1.exon1;Parent=MS.gene054682.t1
chr5.3 CDS 32303400 32303489 32303400 ID=cds.MS.gene054682.t1;Parent=MS.gene054682.t1
chr5.3 exon 32303638 32304112 32303638 ID=MS.gene054682.t1.exon2;Parent=MS.gene054682.t1
chr5.3 CDS 32303638 32304112 32303638 ID=cds.MS.gene054682.t1;Parent=MS.gene054682.t1
chr5.3 exon 32304209 32304369 32304209 ID=MS.gene054682.t1.exon3;Parent=MS.gene054682.t1
chr5.3 CDS 32304209 32304369 32304209 ID=cds.MS.gene054682.t1;Parent=MS.gene054682.t1
chr5.3 exon 32304618 32304894 32304618 ID=MS.gene054682.t1.exon4;Parent=MS.gene054682.t1
chr5.3 CDS 32304618 32304894 32304618 ID=cds.MS.gene054682.t1;Parent=MS.gene054682.t1
chr5.3 exon 32305143 32305192 32305143 ID=MS.gene054682.t1.exon5;Parent=MS.gene054682.t1
chr5.3 CDS 32305143 32305192 32305143 ID=cds.MS.gene054682.t1;Parent=MS.gene054682.t1
Gene Sequence

>MS.gene054682

ATGTCTTCTCCGAGTGTTGTTCATCAGTTCCATAAGTCACAATGTTTTTTCAAAGTCATCGTCGAGAAAACCCTTAAAAAGAAAGAGATTGTAAGTGCATGTTAACCTTTTATTTAGTTTTCTACTTTAATATTTTTGGTCACAACCTTTTATTTAGACACATTCATAGCTTTTTTTTAGTGCTATTGTTGGAGTAATAGTATAATTTTTTATTACTAAAATGTTTACAATGTAACAGATGATTCCTAGGAGTTTTGTGAAGAAATATGGGAAAAAATTATCAAACCCAGTAACCCTAGTTCTACCAAATGGTGATAAATGGGAAGTAAATTGGATAAAACGTGACCATGACGTGTGGTTTCAAAAGGGTTGGGAAAAATTTGCACAACACTATTCAATGAGTTATGGGCATTTTTTAGTTTTTAGACTTGAAACAAGGTCTCAATTTCAAGTAATGATATTTGACAAAAGCGCTTTGGAAATGGATTATTGGAGTATACCAAGCCCTAGAGATCAAGTTGAAAGAAACATTCATCATCATGAAGATGCTGAAAAGAGTGGCGATAAAGACGATTATATTGAGATTTCGGATGAGAGTGAAATGCGAAGATCTTCATCACCTCGACCTCAGAAAAGAATGAAAACCAGTGATGGTCCATCTCAAAGGAAAAACCTAAAGAAGGAAAAAATAAATGTGGATAAAAAAATCAAAGGTAAGTTATAATTTTCTCCTTCATTTTAATTATTCTCCTCCATCATAATGTTAAATTGCTACTTGAATGCTGAAAGTATTTTTTTTACAATTTCAGGAGGTAATGGAGAAAATTTCTTCAAAGCAAAGAATGACTCATCAAATGAAGCTATGAATTGGAAAGAAACACTACAAAATACTAAAAGGAGAGCCATGAATTTTCATTCCGATAACCCCTTTTTCATTCGTCCGTTGCATCCATCCTACCTTGAACATATGGTATCTATATTGTTTATTCCTTTTAGAATCAATTTCCACATTTTACTATATTGTTTAACACTCTAGAAATGTTTTCCTATATAATTCATGTATTCCTTTCCATTTTAAAGGAAGCTTTATAATTTGATTAACGAAACACTTTTTCGTTTGATTAGTGAATTTATTTACTTTTGGTATATCTTGAATTTATTTTTATTCTTCTCAAAATCTTGATATTTTTTCTTGTGTTTAAATGATAATTGGATCAGTTTATACCAACATCGTTTTCCAAAGAGTATTTGAATGGAAAGGATGGGATTGCAACCGTGGTGTTTGGTGATGAGGATAAGACTTGGTCCTTAAACTTCAAGTTCAATGCTACCACTAATCGAGCACTCATAACTTCTGGTTGGAGACAAATTGTTGAGGAATATAATTTCAAAGTTGGTGACACTTGTGTGTTTGAGATGACTGATAGTACAAATATCTTATTTAAAGTCTATATTGTTCGAGCCAGTGATCAATCTAGCTCCGCGCACTTTCAAGGTATTAAATAAATTTATTATTCGTTACAAATTATAATAAATAATTTACATATTTACGTTTCCATTTTTTATATGCAAATGGATGAAAGGTTTAATATTTCTATGTGAAGCCCGTCTACTATAAATCATGTTGTGTTGTAATAATTTTTGTTAAGTAACAATATTGAGTTTTTCTTTGGTTACGGTAAGTGTTATTAATATTATTACATTCTTTCAAATAACATTACAAATGCGTATGTATTCTTGCAGATTCTGGAAATCCTAAAATGAAGAGGAAATCAAATTCAAGACAAAACTGA
Protein sequence

>MS.gene054682.t1

MSSPSVVHQFHKSQCFFKVIVEKTLKKKEIMIPRSFVKKYGKKLSNPVTLVLPNGDKWEVNWIKRDHDVWFQKGWEKFAQHYSMSYGHFLVFRLETRSQFQVMIFDKSALEMDYWSIPSPRDQVERNIHHHEDAEKSGDKDDYIEISDESEMRRSSSPRPQKRMKTSDGPSQRKNLKKEKINVDKKIKGGNGENFFKAKNDSSNEAMNWKETLQNTKRRAMNFHSDNPFFIRPLHPSYLEHMFIPTSFSKEYLNGKDGIATVVFGDEDKTWSLNFKFNATTNRALITSGWRQIVEEYNFKVGDTCVFEMTDSTNILFKVYIVRASDQSSSAHFQDSGNPKMKRKSNSRQN