Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068154.t1 | RHN78223.1 | 75.6 | 454 | 81 | 4 | 1 | 440 | 1 | 438 | 4.30E-177 | 630.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068154.t1 | Q8L3W1 | 25.3 | 336 | 204 | 10 | 7 | 298 | 4 | 336 | 1.2e-15 | 85.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068154.t1 | A0A396JPN4 | 75.6 | 454 | 81 | 4 | 1 | 440 | 1 | 438 | 3.1e-177 | 630.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene068154.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050355 | MS.gene068154 | 0.809446 | 1.88E-50 | -1.69E-46 |
| MS.gene052829 | MS.gene068154 | 0.86658 | 2.57E-65 | -1.69E-46 |
| MS.gene052843 | MS.gene068154 | 0.886078 | 4.67E-72 | -1.69E-46 |
| MS.gene056498 | MS.gene068154 | 0.801649 | 8.15E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene068154 | 0.803166 | 3.97E-49 | -1.69E-46 |
| MS.gene060553 | MS.gene068154 | 0.80118 | 1.02E-48 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068154.t1 | MTR_1g035570 | 71.429 | 448 | 71 | 5 | 1 | 438 | 1 | 401 | 0.0 | 597 |
| MS.gene068154.t1 | MTR_1g035490 | 68.012 | 322 | 73 | 7 | 131 | 433 | 20 | 330 | 2.75e-132 | 384 |
| MS.gene068154.t1 | MTR_1g035640 | 46.092 | 499 | 168 | 11 | 1 | 432 | 1 | 465 | 4.42e-127 | 376 |
| MS.gene068154.t1 | MTR_1g035620 | 43.584 | 452 | 189 | 12 | 1 | 430 | 1 | 408 | 7.36e-109 | 328 |
| MS.gene068154.t1 | MTR_1g050845 | 41.905 | 420 | 166 | 12 | 1 | 398 | 1 | 364 | 4.50e-85 | 278 |
| MS.gene068154.t1 | MTR_6g061070 | 35.333 | 450 | 253 | 12 | 14 | 431 | 27 | 470 | 4.67e-76 | 245 |
| MS.gene068154.t1 | MTR_1g035650 | 42.857 | 231 | 91 | 5 | 1 | 218 | 1 | 203 | 3.11e-48 | 164 |
| MS.gene068154.t1 | MTR_8g103940 | 26.667 | 465 | 274 | 13 | 14 | 430 | 48 | 493 | 1.44e-39 | 149 |
| MS.gene068154.t1 | MTR_1g108780 | 27.391 | 460 | 270 | 15 | 20 | 430 | 12 | 456 | 6.41e-39 | 146 |
| MS.gene068154.t1 | MTR_7g050710 | 31.889 | 323 | 181 | 11 | 8 | 308 | 12 | 317 | 8.88e-35 | 132 |
| MS.gene068154.t1 | MTR_5g044670 | 30.464 | 302 | 178 | 7 | 14 | 302 | 25 | 307 | 1.23e-34 | 132 |
| MS.gene068154.t1 | MTR_3g098790 | 32.082 | 293 | 176 | 8 | 14 | 298 | 22 | 299 | 4.98e-33 | 127 |
| MS.gene068154.t1 | MTR_7g050560 | 32.877 | 292 | 166 | 9 | 14 | 298 | 22 | 290 | 1.04e-32 | 126 |
| MS.gene068154.t1 | MTR_7g050590 | 31.959 | 291 | 173 | 10 | 21 | 298 | 2 | 280 | 1.13e-30 | 120 |
| MS.gene068154.t1 | MTR_7g050720 | 31.546 | 317 | 196 | 14 | 1 | 298 | 1 | 315 | 1.52e-29 | 117 |
| MS.gene068154.t1 | MTR_1g035510 | 33.480 | 227 | 131 | 9 | 21 | 241 | 2 | 214 | 9.04e-29 | 113 |
| MS.gene068154.t1 | MTR_7g050580 | 33.444 | 302 | 165 | 11 | 9 | 298 | 13 | 290 | 1.18e-28 | 115 |
| MS.gene068154.t1 | MTR_1g035480 | 48.246 | 114 | 56 | 2 | 14 | 127 | 26 | 136 | 2.42e-28 | 110 |
| MS.gene068154.t1 | MTR_1g033740 | 42.735 | 117 | 64 | 2 | 14 | 130 | 31 | 144 | 1.91e-26 | 105 |
| MS.gene068154.t1 | MTR_3g061310 | 26.962 | 293 | 189 | 9 | 9 | 296 | 12 | 284 | 1.14e-25 | 106 |
| MS.gene068154.t1 | MTR_1g035460 | 24.020 | 408 | 250 | 10 | 21 | 381 | 2 | 396 | 1.48e-25 | 107 |
| MS.gene068154.t1 | MTR_3g061350 | 26.599 | 297 | 184 | 9 | 9 | 296 | 12 | 283 | 7.84e-25 | 103 |
| MS.gene068154.t1 | MTR_4g119990 | 27.362 | 307 | 193 | 9 | 9 | 296 | 15 | 310 | 5.05e-24 | 103 |
| MS.gene068154.t1 | MTR_1g035500 | 44.262 | 122 | 64 | 3 | 5 | 126 | 26 | 143 | 8.94e-24 | 98.2 |
| MS.gene068154.t1 | MTR_3g061340 | 26.936 | 297 | 173 | 13 | 9 | 296 | 12 | 273 | 1.01e-23 | 100 |
| MS.gene068154.t1 | MTR_3g061320 | 25.000 | 300 | 180 | 9 | 9 | 296 | 12 | 278 | 1.35e-23 | 100 |
| MS.gene068154.t1 | MTR_6g043890 | 27.046 | 281 | 184 | 7 | 13 | 284 | 23 | 291 | 1.99e-23 | 100 |
| MS.gene068154.t1 | MTR_1g035470 | 40.909 | 110 | 62 | 2 | 21 | 130 | 2 | 108 | 3.89e-22 | 92.4 |
| MS.gene068154.t1 | MTR_3g061370 | 23.102 | 303 | 187 | 8 | 9 | 296 | 9 | 280 | 3.94e-22 | 96.3 |
| MS.gene068154.t1 | MTR_1g035520 | 26.899 | 316 | 198 | 8 | 5 | 296 | 76 | 382 | 2.78e-21 | 95.5 |
| MS.gene068154.t1 | MTR_1g035520 | 42.478 | 113 | 55 | 3 | 329 | 431 | 271 | 383 | 2.16e-17 | 84.0 |
| MS.gene068154.t1 | MTR_3g061290 | 37.815 | 119 | 68 | 3 | 9 | 123 | 12 | 128 | 2.60e-19 | 86.3 |
| MS.gene068154.t1 | MTR_3g061330 | 31.548 | 168 | 105 | 5 | 9 | 168 | 12 | 177 | 8.94e-19 | 85.9 |
| MS.gene068154.t1 | MTR_1g034210 | 26.027 | 365 | 199 | 13 | 6 | 303 | 4 | 364 | 1.86e-18 | 87.0 |
| MS.gene068154.t1 | MTR_1g021270 | 22.866 | 328 | 203 | 10 | 7 | 286 | 14 | 339 | 3.66e-14 | 75.1 |
| MS.gene068154.t1 | MTR_3g005480 | 23.891 | 293 | 155 | 8 | 14 | 299 | 30 | 261 | 1.38e-13 | 71.2 |
| MS.gene068154.t1 | MTR_4g068320 | 36.634 | 101 | 58 | 2 | 7 | 101 | 4 | 104 | 3.52e-13 | 71.2 |
| MS.gene068154.t1 | MTR_7g050640 | 40.541 | 111 | 56 | 4 | 3 | 103 | 5 | 115 | 6.07e-13 | 65.5 |
| MS.gene068154.t1 | MTR_1g034240 | 34.234 | 111 | 66 | 3 | 7 | 110 | 5 | 115 | 1.68e-12 | 69.3 |
| MS.gene068154.t1 | MTR_3g005490 | 23.208 | 293 | 160 | 8 | 14 | 301 | 30 | 262 | 6.40e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068154.t1 | AT3G18990 | 26.608 | 342 | 198 | 10 | 7 | 301 | 4 | 339 | 7.40e-23 | 100 |
| MS.gene068154.t1 | AT3G18990 | 26.844 | 339 | 195 | 10 | 7 | 298 | 4 | 336 | 1.07e-22 | 99.0 |
Find 73 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTAGCTGTGCTTCTTTA+AGG | 0.068553 | 1.4:+37254594 | MS.gene068154:CDS |
| TTTGCAAAGCCTTTCAAATA+TGG | 0.180110 | 1.4:+37252384 | MS.gene068154:CDS |
| AAATATCTTGGAGTTGAAAA+TGG | 0.201158 | 1.4:+37254395 | MS.gene068154:CDS |
| TATTTCTCCACATATTTCTT+TGG | 0.248757 | 1.4:-37252249 | None:intergenic |
| TTCATCAACTGATTTGATAT+TGG | 0.261684 | 1.4:-37252490 | None:intergenic |
| CATTAACAGCTTCAGATCTT+AGG | 0.270045 | 1.4:-37253092 | None:intergenic |
| TTAATGGAACTGCAACAATA+AGG | 0.277244 | 1.4:+37253285 | MS.gene068154:CDS |
| AGAAATATGTGGAGAAATAT+TGG | 0.281812 | 1.4:+37252253 | MS.gene068154:CDS |
| TGGAGAGTAATGGTGATATT+TGG | 0.287546 | 1.4:+37252340 | MS.gene068154:CDS |
| GTGTTTGATGTTTCAATTGT+AGG | 0.300485 | 1.4:+37254564 | MS.gene068154:CDS |
| CTCTTAACTTTCAAATTCAT+TGG | 0.314459 | 1.4:+37252411 | MS.gene068154:CDS |
| TTAGGAAACTTAAGGAATAT+AGG | 0.318222 | 1.4:-37252291 | None:intergenic |
| ATAGTAACATTGAATGAAAT+TGG | 0.319993 | 1.4:-37253455 | None:intergenic |
| AGAAAACCTAGTGATTTCTT+TGG | 0.323706 | 1.4:-37253503 | None:intergenic |
| AGAGCAGTACCCTTTACTTT+TGG | 0.331691 | 1.4:-37253694 | None:intergenic |
| CCTAGTGATTTCTTTGGCTT+TGG | 0.332979 | 1.4:-37253497 | None:intergenic |
| CTGGTCCTTTGAGTTTGCTT+TGG | 0.341746 | 1.4:-37252675 | None:intergenic |
| TAGGAAACTTAAGGAATATA+GGG | 0.346499 | 1.4:-37252290 | None:intergenic |
| AATATCTTGGAGTTGAAAAT+GGG | 0.359463 | 1.4:+37254396 | MS.gene068154:CDS |
| TAATGGAACTGCAACAATAA+GGG | 0.376410 | 1.4:+37253286 | MS.gene068154:CDS |
| ACTTTCTTCACCTTCTTCAA+TGG | 0.380996 | 1.4:-37252613 | None:intergenic |
| TCATGATTCATAAACTCCTT+TGG | 0.383485 | 1.4:-37254372 | None:intergenic |
| TATGAATCATGAAAATATCT+TGG | 0.394934 | 1.4:+37254383 | MS.gene068154:CDS |
| CAACACCGTTAGGAAACTTA+AGG | 0.403140 | 1.4:-37252299 | None:intergenic |
| ATAGTTTATTTCTAAAGTAT+TGG | 0.406626 | 1.4:-37252466 | None:intergenic |
| CCTTAAAGAAGCACAGCTAA+TGG | 0.407485 | 1.4:-37254594 | None:intergenic |
| GTGGTGGATGGAAAATATTC+AGG | 0.420444 | 1.4:+37253375 | MS.gene068154:CDS |
| AAAGAATGCAAAGTGGAGAT+TGG | 0.431700 | 1.4:+37254501 | MS.gene068154:CDS |
| AAATATTATGAGAGTCTTTG+TGG | 0.437608 | 1.4:+37254444 | MS.gene068154:CDS |
| AGTCTTTGTGGCTGTAAGTT+CGG | 0.438865 | 1.4:+37254456 | MS.gene068154:CDS |
| AAGATGATCCTATGAAAATC+TGG | 0.438926 | 1.4:-37252085 | None:intergenic |
| CAAACTCAAAGGACCAGAAA+TGG | 0.451853 | 1.4:+37252681 | MS.gene068154:CDS |
| TTAACTTTCAAATTCATTGG+TGG | 0.475675 | 1.4:+37252414 | MS.gene068154:CDS |
| AGGAGCCATCCAAAAGTAAA+GGG | 0.477165 | 1.4:+37253685 | MS.gene068154:CDS |
| TAGGAGCCATCCAAAAGTAA+AGG | 0.478853 | 1.4:+37253684 | MS.gene068154:CDS |
| CAAAGTGGCCATGGTAAAGA+AGG | 0.488314 | 1.4:+37253059 | MS.gene068154:CDS |
| TGAAAATGGGGAGAAAATCA+TGG | 0.492046 | 1.4:+37254409 | MS.gene068154:CDS |
| TGACATTATAACTTCAAAAG+AGG | 0.495408 | 1.4:-37253121 | None:intergenic |
| TGTGGCTGTAAGTTCGGTAA+AGG | 0.504977 | 1.4:+37254462 | MS.gene068154:CDS |
| GCTGTAAGTTCGGTAAAGGT+TGG | 0.518813 | 1.4:+37254466 | MS.gene068154:CDS |
| AAGAGATATCCATATTTGAA+AGG | 0.520085 | 1.4:-37252393 | None:intergenic |
| AATGGCAAGAGAAAATTCTC+AGG | 0.523324 | 1.4:+37252699 | MS.gene068154:CDS |
| GACATTATAACTTCAAAAGA+GGG | 0.525934 | 1.4:-37253120 | None:intergenic |
| AAGACATTGGAGGAACATCT+AGG | 0.526190 | 1.4:+37253665 | MS.gene068154:CDS |
| GAAGGAGCACAAGACATTCA+AGG | 0.537945 | 1.4:+37254121 | MS.gene068154:CDS |
| AATATCAAATCAGTTGATGA+AGG | 0.540855 | 1.4:+37252492 | MS.gene068154:CDS |
| GATGAGGAAGCCATTGAAGA+AGG | 0.544836 | 1.4:+37252603 | MS.gene068154:CDS |
| CAATAAGGGTTGGTAATGAA+AGG | 0.551596 | 1.4:+37253300 | MS.gene068154:CDS |
| CCAAAGCCAAAGAAATCACT+AGG | 0.556666 | 1.4:+37253497 | MS.gene068154:CDS |
| GTAAATTTGAGATGATTCGA+CGG | 0.557247 | 1.4:+37253429 | MS.gene068154:CDS |
| GTTGTAAAGAAGCAAGACAT+TGG | 0.558494 | 1.4:+37253652 | MS.gene068154:CDS |
| TGTTCTCTTGAAAACTCACT+TGG | 0.561927 | 1.4:-37253251 | None:intergenic |
| TACAGAAGGTCGTGATGTGA+AGG | 0.563378 | 1.4:+37254103 | MS.gene068154:intron |
| AAGTGATGAATCAAGTGATG+AGG | 0.567308 | 1.4:+37252587 | MS.gene068154:CDS |
| TCTTACAAAGAAATAGCCAT+TGG | 0.576025 | 1.4:-37253154 | None:intergenic |
| AGGTAGTAACAAAGTGGCCA+TGG | 0.577811 | 1.4:+37253050 | MS.gene068154:intron |
| GGAACTGCAACAATAAGGGT+TGG | 0.581562 | 1.4:+37253290 | MS.gene068154:CDS |
| AATATTGTATGGGTGGTGGA+TGG | 0.587908 | 1.4:+37253363 | MS.gene068154:CDS |
| GGTGCTGAAGACACAGAAGA+AGG | 0.588176 | 1.4:+37252513 | MS.gene068154:CDS |
| ATATTCCTTAAGTTTCCTAA+CGG | 0.590322 | 1.4:+37252294 | MS.gene068154:CDS |
| GAGTAATGAGAGTTCAGATG+AGG | 0.591415 | 1.4:+37252644 | MS.gene068154:CDS |
| GAGGGTTCCAAAGAAATATG+TGG | 0.594786 | 1.4:+37252242 | MS.gene068154:intron |
| GTATCTGCAGTGTGTACCAA+AGG | 0.598126 | 1.4:+37254356 | MS.gene068154:intron |
| GTAAAGAAGCAAGACATTGG+AGG | 0.602206 | 1.4:+37253655 | MS.gene068154:CDS |
| ATGTCACAATCTTACGCCAA+TGG | 0.605717 | 1.4:+37253138 | MS.gene068154:CDS |
| GGTTGGTAATGAAAGGAGTG+TGG | 0.605745 | 1.4:+37253307 | MS.gene068154:CDS |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1.4:+37252258 | MS.gene068154:CDS |
| ATTCATGAAAGAATGCAAAG+TGG | 0.625279 | 1.4:+37254494 | MS.gene068154:CDS |
| TTTCGTGAAGAACAAAACCC+CGG | 0.628138 | 1.4:+37254145 | MS.gene068154:CDS |
| ATATCTTGGAGTTGAAAATG+GGG | 0.639227 | 1.4:+37254397 | MS.gene068154:CDS |
| AAATACCAAAGCAAACTCAA+AGG | 0.654830 | 1.4:+37252670 | MS.gene068154:CDS |
| GGAGTGTGGAAGTGAGTGTG+AGG | 0.659449 | 1.4:+37253321 | MS.gene068154:CDS |
| CTTGGCAGGTAGTAACAAAG+TGG | 0.670962 | 1.4:+37253044 | MS.gene068154:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAATATATCTATAATTTTT+TGG | + | chr1.4:37254031-37254050 | MS.gene068154:intron | 10.0% |
| !! | AAACTTATGAATGATTTATA+AGG | + | chr1.4:37253823-37253842 | MS.gene068154:intron | 15.0% |
| !! | ATTTGAATAGATTTATAGTT+AGG | - | chr1.4:37254016-37254035 | None:intergenic | 15.0% |
| !! | TAAAAAATATTTCAATTCAC+AGG | - | chr1.4:37253899-37253918 | None:intergenic | 15.0% |
| !! | TTTATGTAATTATATCTTAC+CGG | - | chr1.4:37254167-37254186 | None:intergenic | 15.0% |
| !!! | ATAGTTTATTTCTAAAGTAT+TGG | - | chr1.4:37252469-37252488 | None:intergenic | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | + | chr1.4:37252355-37252374 | MS.gene068154:CDS | 15.0% |
| !!! | TATATAAAACTTTTTTTGGT+AGG | + | chr1.4:37252905-37252924 | MS.gene068154:intron | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | + | chr1.4:37252356-37252375 | MS.gene068154:CDS | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | + | chr1.4:37252441-37252460 | MS.gene068154:CDS | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | + | chr1.4:37252317-37252336 | MS.gene068154:CDS | 15.0% |
| !!! | TTAGATTTTATTATTGTAGA+GGG | + | chr1.4:37253733-37253752 | MS.gene068154:intron | 15.0% |
| !!! | TTATTTTAAGAGTTATTGAA+TGG | + | chr1.4:37252806-37252825 | MS.gene068154:intron | 15.0% |
| !!! | TTCTTTCTTTCTTATTTATT+TGG | + | chr1.4:37253522-37253541 | MS.gene068154:intron | 15.0% |
| !!! | TTTAGATTTTATTATTGTAG+AGG | + | chr1.4:37253732-37253751 | MS.gene068154:intron | 15.0% |
| !! | AGGTTAAAAGTTAATAGAAT+GGG | - | chr1.4:37254279-37254298 | None:intergenic | 20.0% |
| !! | ATAGTAACATTGAATGAAAT+TGG | - | chr1.4:37253458-37253477 | None:intergenic | 20.0% |
| !! | TATGAATCATGAAAATATCT+TGG | + | chr1.4:37254383-37254402 | MS.gene068154:CDS | 20.0% |
| !! | TTATGTAATTATATCTTACC+GGG | - | chr1.4:37254166-37254185 | None:intergenic | 20.0% |
| !!! | AATATATTCCAGATTTTCAT+AGG | + | chr1.4:37252077-37252096 | MS.gene068154:CDS | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | + | chr1.4:37252316-37252335 | MS.gene068154:CDS | 20.0% |
| ! | AAATATCTTGGAGTTGAAAA+TGG | + | chr1.4:37254395-37254414 | MS.gene068154:CDS | 25.0% |
| ! | AAATATTATGAGAGTCTTTG+TGG | + | chr1.4:37254444-37254463 | MS.gene068154:CDS | 25.0% |
| ! | AAGAGATATCCATATTTGAA+AGG | - | chr1.4:37252396-37252415 | None:intergenic | 25.0% |
| ! | AATATCTTGGAGTTGAAAAT+GGG | + | chr1.4:37254396-37254415 | MS.gene068154:CDS | 25.0% |
| ! | AATTGAACGAAAGTTAGTTA+TGG | - | chr1.4:37254221-37254240 | None:intergenic | 25.0% |
| ! | ACCCAGAAAAAATATTGTAT+GGG | + | chr1.4:37253353-37253372 | MS.gene068154:CDS | 25.0% |
| ! | AGAAATATGTGGAGAAATAT+TGG | + | chr1.4:37252253-37252272 | MS.gene068154:CDS | 25.0% |
| ! | ATATTCCTTAAGTTTCCTAA+CGG | + | chr1.4:37252294-37252313 | MS.gene068154:CDS | 25.0% |
| ! | ATGACAAGGTTATAAAAAAG+GGG | + | chr1.4:37253612-37253631 | MS.gene068154:intron | 25.0% |
| ! | ATTGAACGAAAGTTAGTTAT+GGG | - | chr1.4:37254220-37254239 | None:intergenic | 25.0% |
| ! | CATGACAAGGTTATAAAAAA+GGG | + | chr1.4:37253611-37253630 | MS.gene068154:intron | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | + | chr1.4:37252411-37252430 | MS.gene068154:CDS | 25.0% |
| ! | GACATTATAACTTCAAAAGA+GGG | - | chr1.4:37253123-37253142 | None:intergenic | 25.0% |
| ! | GAGGTTAAAAGTTAATAGAA+TGG | - | chr1.4:37254280-37254299 | None:intergenic | 25.0% |
| ! | GATTAGATTAGATACTATCA+TGG | + | chr1.4:37254068-37254087 | MS.gene068154:intron | 25.0% |
| ! | TAAAAGAAGAAACTGAAAAC+TGG | - | chr1.4:37253985-37254004 | None:intergenic | 25.0% |
| ! | TACCCAGAAAAAATATTGTA+TGG | + | chr1.4:37253352-37253371 | MS.gene068154:CDS | 25.0% |
| ! | TAGGAAACTTAAGGAATATA+GGG | - | chr1.4:37252293-37252312 | None:intergenic | 25.0% |
| ! | TATGTAATTATATCTTACCG+GGG | - | chr1.4:37254165-37254184 | None:intergenic | 25.0% |
| ! | TATTTCTCCACATATTTCTT+TGG | - | chr1.4:37252252-37252271 | None:intergenic | 25.0% |
| ! | TGAATGATTTATAAGGTTCT+TGG | + | chr1.4:37253830-37253849 | MS.gene068154:intron | 25.0% |
| ! | TGACATTATAACTTCAAAAG+AGG | - | chr1.4:37253124-37253143 | None:intergenic | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | + | chr1.4:37252414-37252433 | MS.gene068154:CDS | 25.0% |
| ! | TTAGGAAACTTAAGGAATAT+AGG | - | chr1.4:37252294-37252313 | None:intergenic | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+TGG | + | chr1.4:37253269-37253288 | MS.gene068154:CDS | 25.0% |
| !!! | AATATCAAATCAGTTGATGA+AGG | + | chr1.4:37252492-37252511 | MS.gene068154:CDS | 25.0% |
| !!! | ACCCATACAATATTTTTTCT+GGG | - | chr1.4:37253357-37253376 | None:intergenic | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | + | chr1.4:37252320-37252339 | MS.gene068154:CDS | 25.0% |
| !!! | TTCATCAACTGATTTGATAT+TGG | - | chr1.4:37252493-37252512 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTTATCCATGACA+AGG | + | chr1.4:37253598-37253617 | MS.gene068154:intron | 25.0% |
| AAAAAATATTGTATGGGTGG+TGG | + | chr1.4:37253359-37253378 | MS.gene068154:CDS | 30.0% | |
| AAATACCAAAGCAAACTCAA+AGG | + | chr1.4:37252670-37252689 | MS.gene068154:CDS | 30.0% | |
| AAATAGTTAATGCCTAAGCT+TGG | + | chr1.4:37253026-37253045 | MS.gene068154:intron | 30.0% | |
| AAGATGATCCTATGAAAATC+TGG | - | chr1.4:37252088-37252107 | None:intergenic | 30.0% | |
| AGAAAACCTAGTGATTTCTT+TGG | - | chr1.4:37253506-37253525 | None:intergenic | 30.0% | |
| ATATCTTGGAGTTGAAAATG+GGG | + | chr1.4:37254397-37254416 | MS.gene068154:CDS | 30.0% | |
| ATTCATGAAAGAATGCAAAG+TGG | + | chr1.4:37254494-37254513 | MS.gene068154:CDS | 30.0% | |
| CAGAAAAAATATTGTATGGG+TGG | + | chr1.4:37253356-37253375 | MS.gene068154:CDS | 30.0% | |
| CCATGACAAGGTTATAAAAA+AGG | + | chr1.4:37253610-37253629 | MS.gene068154:intron | 30.0% | |
| GTGTTTGATGTTTCAATTGT+AGG | + | chr1.4:37254564-37254583 | MS.gene068154:CDS | 30.0% | |
| TAAACCATTACTTGAAACAG+TGG | + | chr1.4:37253225-37253244 | MS.gene068154:intron | 30.0% | |
| TAATGGAACTGCAACAATAA+GGG | + | chr1.4:37253286-37253305 | MS.gene068154:CDS | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | + | chr1.4:37252258-37252277 | MS.gene068154:CDS | 30.0% | |
| TCATGATTCATAAACTCCTT+TGG | - | chr1.4:37254375-37254394 | None:intergenic | 30.0% | |
| TCTTACAAAGAAATAGCCAT+TGG | - | chr1.4:37253157-37253176 | None:intergenic | 30.0% | |
| TTAATGGAACTGCAACAATA+AGG | + | chr1.4:37253285-37253304 | MS.gene068154:CDS | 30.0% | |
| TTGAATTTCTTTGTTGCAGA+GGG | + | chr1.4:37252224-37252243 | MS.gene068154:intron | 30.0% | |
| TTTGAATTTCTTTGTTGCAG+AGG | + | chr1.4:37252223-37252242 | MS.gene068154:intron | 30.0% | |
| TTTGCAAAGCCTTTCAAATA+TGG | + | chr1.4:37252384-37252403 | MS.gene068154:CDS | 30.0% | |
| ! | AATGGGATTAACTTGACTAA+CGG | - | chr1.4:37254262-37254281 | None:intergenic | 30.0% |
| ! | AGAGTTATTGAATGGTTTGT+TGG | + | chr1.4:37252814-37252833 | MS.gene068154:intron | 30.0% |
| ! | CTTTTAACCTCTAATGTATG+AGG | + | chr1.4:37254289-37254308 | MS.gene068154:intron | 30.0% |
| ! | GTAAATTTGAGATGATTCGA+CGG | + | chr1.4:37253429-37253448 | MS.gene068154:CDS | 30.0% |
| ! | GTTGGAATTTTATGTCTGAA+AGG | + | chr1.4:37252832-37252851 | MS.gene068154:intron | 30.0% |
| !! | CATTGGTGGATCATATTTTA+AGG | + | chr1.4:37252428-37252447 | MS.gene068154:CDS | 30.0% |
| !!! | AGGTGAGTTTGATCTTTTTT+GGG | + | chr1.4:37252719-37252738 | MS.gene068154:intron | 30.0% |
| !!! | ATTTTTTGTTCAACACCGTT+AGG | - | chr1.4:37252312-37252331 | None:intergenic | 30.0% |
| !!! | CACCCATACAATATTTTTTC+TGG | - | chr1.4:37253358-37253377 | None:intergenic | 30.0% |
| !!! | CCTTTTTTATAACCTTGTCA+TGG | - | chr1.4:37253613-37253632 | None:intergenic | 30.0% |
| !!! | GATCTTTTTTGGGTAGATTT+AGG | + | chr1.4:37252729-37252748 | MS.gene068154:intron | 30.0% |
| AAAGAATGCAAAGTGGAGAT+TGG | + | chr1.4:37254501-37254520 | MS.gene068154:CDS | 35.0% | |
| AAGTGATGAATCAAGTGATG+AGG | + | chr1.4:37252587-37252606 | MS.gene068154:CDS | 35.0% | |
| AATGGCAAGAGAAAATTCTC+AGG | + | chr1.4:37252699-37252718 | MS.gene068154:CDS | 35.0% | |
| ACTTTCTTCACCTTCTTCAA+TGG | - | chr1.4:37252616-37252635 | None:intergenic | 35.0% | |
| CATTAACAGCTTCAGATCTT+AGG | - | chr1.4:37253095-37253114 | None:intergenic | 35.0% | |
| GTTGTAAAGAAGCAAGACAT+TGG | + | chr1.4:37253652-37253671 | MS.gene068154:CDS | 35.0% | |
| TATAAAAAAGGGGTCTCTTG+TGG | + | chr1.4:37253622-37253641 | MS.gene068154:CDS | 35.0% | |
| TGAAAATGGGGAGAAAATCA+TGG | + | chr1.4:37254409-37254428 | MS.gene068154:CDS | 35.0% | |
| TGGAGAGTAATGGTGATATT+TGG | + | chr1.4:37252340-37252359 | MS.gene068154:CDS | 35.0% | |
| TGTTCTCTTGAAAACTCACT+TGG | - | chr1.4:37253254-37253273 | None:intergenic | 35.0% | |
| TTAACCTCTAATGTATGAGG+TGG | + | chr1.4:37254292-37254311 | MS.gene068154:intron | 35.0% | |
| ! | GTATCCACTGTTTCAAGTAA+TGG | - | chr1.4:37253232-37253251 | None:intergenic | 35.0% |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | + | chr1.4:37252330-37252349 | MS.gene068154:CDS | 35.0% |
| !! | CAATAAGGGTTGGTAATGAA+AGG | + | chr1.4:37253300-37253319 | MS.gene068154:CDS | 35.0% |
| !! | GAATTTTCTCTTGCCATTTC+TGG | - | chr1.4:37252697-37252716 | None:intergenic | 35.0% |
| !! | TTTTCTAGCCTTCTTTACCA+TGG | - | chr1.4:37253070-37253089 | None:intergenic | 35.0% |
| !!! | CAGGTGAGTTTGATCTTTTT+TGG | + | chr1.4:37252718-37252737 | MS.gene068154:intron | 35.0% |
| AAGACATTGGAGGAACATCT+AGG | + | chr1.4:37253665-37253684 | MS.gene068154:CDS | 40.0% | |
| AGGAGCCATCCAAAAGTAAA+GGG | + | chr1.4:37253685-37253704 | MS.gene068154:CDS | 40.0% | |
| AGTCTTTGTGGCTGTAAGTT+CGG | + | chr1.4:37254456-37254475 | MS.gene068154:CDS | 40.0% | |
| ATGTCACAATCTTACGCCAA+TGG | + | chr1.4:37253138-37253157 | MS.gene068154:CDS | 40.0% | |
| CAAACTCAAAGGACCAGAAA+TGG | + | chr1.4:37252681-37252700 | MS.gene068154:CDS | 40.0% | |
| CAACACCGTTAGGAAACTTA+AGG | - | chr1.4:37252302-37252321 | None:intergenic | 40.0% | |
| CCAAAGCCAAAGAAATCACT+AGG | + | chr1.4:37253497-37253516 | MS.gene068154:CDS | 40.0% | |
| GAGGGTTCCAAAGAAATATG+TGG | + | chr1.4:37252242-37252261 | MS.gene068154:intron | 40.0% | |
| GAGTAATGAGAGTTCAGATG+AGG | + | chr1.4:37252644-37252663 | MS.gene068154:CDS | 40.0% | |
| GGTGTTTATGCATGTACAGA+AGG | + | chr1.4:37254089-37254108 | MS.gene068154:intron | 40.0% | |
| GTAAAGAAGCAAGACATTGG+AGG | + | chr1.4:37253655-37253674 | MS.gene068154:CDS | 40.0% | |
| TAGGAGCCATCCAAAAGTAA+AGG | + | chr1.4:37253684-37253703 | MS.gene068154:CDS | 40.0% | |
| TTTCGTGAAGAACAAAACCC+CGG | + | chr1.4:37254145-37254164 | MS.gene068154:CDS | 40.0% | |
| ! | AGAGCAGTACCCTTTACTTT+TGG | - | chr1.4:37253697-37253716 | None:intergenic | 40.0% |
| ! | CCTAGTGATTTCTTTGGCTT+TGG | - | chr1.4:37253500-37253519 | None:intergenic | 40.0% |
| !! | AATATTGTATGGGTGGTGGA+TGG | + | chr1.4:37253363-37253382 | MS.gene068154:CDS | 40.0% |
| !! | CAGTACCCTTTACTTTTGGA+TGG | - | chr1.4:37253693-37253712 | None:intergenic | 40.0% |
| !! | GTGGTGGATGGAAAATATTC+AGG | + | chr1.4:37253375-37253394 | MS.gene068154:CDS | 40.0% |
| !!! | CTTTGGCTTTGGTTCGTTTT+TGG | - | chr1.4:37253489-37253508 | None:intergenic | 40.0% |
| AGGTAGTAACAAAGTGGCCA+TGG | + | chr1.4:37253050-37253069 | MS.gene068154:intron | 45.0% | |
| AGTTAATGCCTAAGCTTGGC+AGG | + | chr1.4:37253030-37253049 | MS.gene068154:intron | 45.0% | |
| CAAAGTGGCCATGGTAAAGA+AGG | + | chr1.4:37253059-37253078 | MS.gene068154:CDS | 45.0% | |
| CTTGGCAGGTAGTAACAAAG+TGG | + | chr1.4:37253044-37253063 | MS.gene068154:intron | 45.0% | |
| GATGAGGAAGCCATTGAAGA+AGG | + | chr1.4:37252603-37252622 | MS.gene068154:CDS | 45.0% | |
| GCTGTAAGTTCGGTAAAGGT+TGG | + | chr1.4:37254466-37254485 | MS.gene068154:CDS | 45.0% | |
| GGAACTGCAACAATAAGGGT+TGG | + | chr1.4:37253290-37253309 | MS.gene068154:CDS | 45.0% | |
| GTATCTGCAGTGTGTACCAA+AGG | + | chr1.4:37254356-37254375 | MS.gene068154:intron | 45.0% | |
| GTGTCCACCTCATACATTAG+AGG | - | chr1.4:37254299-37254318 | None:intergenic | 45.0% | |
| TACAGAAGGTCGTGATGTGA+AGG | + | chr1.4:37254103-37254122 | MS.gene068154:intron | 45.0% | |
| TGTGGCTGTAAGTTCGGTAA+AGG | + | chr1.4:37254462-37254481 | MS.gene068154:CDS | 45.0% | |
| TGTTACTACCTGCCAAGCTT+AGG | - | chr1.4:37253041-37253060 | None:intergenic | 45.0% | |
| ! | CTGGTCCTTTGAGTTTGCTT+TGG | - | chr1.4:37252678-37252697 | None:intergenic | 45.0% |
| ! | GAAGGAGCACAAGACATTCA+AGG | + | chr1.4:37254121-37254140 | MS.gene068154:CDS | 45.0% |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | + | chr1.4:37253307-37253326 | MS.gene068154:CDS | 45.0% |
| !! | AAAAATAATAAATACTTAAT+TGG | + | chr1.4:37252957-37252976 | MS.gene068154:intron | 5.0% |
| !! | ATTATATATATTTCTTAATT+TGG | + | chr1.4:37253795-37253814 | MS.gene068154:intron | 5.0% |
| !!! | AAATATATCTATAATTTTTT+GGG | + | chr1.4:37254032-37254051 | MS.gene068154:intron | 5.0% |
| !!! | TTTTTATATAAAACTTTTTT+TGG | + | chr1.4:37252901-37252920 | MS.gene068154:intron | 5.0% |
| ! | GGTGCTGAAGACACAGAAGA+AGG | + | chr1.4:37252513-37252532 | MS.gene068154:CDS | 50.0% |
| GGAGTGTGGAAGTGAGTGTG+AGG | + | chr1.4:37253321-37253340 | MS.gene068154:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 37252067 | 37254614 | 37252067 | ID=MS.gene068154 |
| chr1.4 | mRNA | 37252067 | 37254614 | 37252067 | ID=MS.gene068154.t1;Parent=MS.gene068154 |
| chr1.4 | exon | 37252067 | 37252123 | 37252067 | ID=MS.gene068154.t1.exon1;Parent=MS.gene068154.t1 |
| chr1.4 | CDS | 37252067 | 37252123 | 37252067 | ID=cds.MS.gene068154.t1;Parent=MS.gene068154.t1 |
| chr1.4 | exon | 37252243 | 37252720 | 37252243 | ID=MS.gene068154.t1.exon2;Parent=MS.gene068154.t1 |
| chr1.4 | CDS | 37252243 | 37252720 | 37252243 | ID=cds.MS.gene068154.t1;Parent=MS.gene068154.t1 |
| chr1.4 | exon | 37253052 | 37253170 | 37253052 | ID=MS.gene068154.t1.exon3;Parent=MS.gene068154.t1 |
| chr1.4 | CDS | 37253052 | 37253170 | 37253052 | ID=cds.MS.gene068154.t1;Parent=MS.gene068154.t1 |
| chr1.4 | exon | 37253245 | 37253518 | 37253245 | ID=MS.gene068154.t1.exon4;Parent=MS.gene068154.t1 |
| chr1.4 | CDS | 37253245 | 37253518 | 37253245 | ID=cds.MS.gene068154.t1;Parent=MS.gene068154.t1 |
| chr1.4 | exon | 37253620 | 37253706 | 37253620 | ID=MS.gene068154.t1.exon5;Parent=MS.gene068154.t1 |
| chr1.4 | CDS | 37253620 | 37253706 | 37253620 | ID=cds.MS.gene068154.t1;Parent=MS.gene068154.t1 |
| chr1.4 | exon | 37254108 | 37254166 | 37254108 | ID=MS.gene068154.t1.exon6;Parent=MS.gene068154.t1 |
| chr1.4 | CDS | 37254108 | 37254166 | 37254108 | ID=cds.MS.gene068154.t1;Parent=MS.gene068154.t1 |
| chr1.4 | exon | 37254366 | 37254614 | 37254366 | ID=MS.gene068154.t1.exon7;Parent=MS.gene068154.t1 |
| chr1.4 | CDS | 37254366 | 37254614 | 37254366 | ID=cds.MS.gene068154.t1;Parent=MS.gene068154.t1 |
| Gene Sequence |
| Protein sequence |
