AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31890.t1 MTR_6g061070 71.749 223 25 1 80 264 241 463 1.63e-106 317
MS.gene31890.t1 MTR_6g061070 74.359 78 20 0 3 80 1 78 2.30e-35 132
MS.gene31890.t1 MTR_1g035520 76.842 95 21 1 171 264 282 376 1.23e-44 155
MS.gene31890.t1 MTR_1g035520 78.261 46 10 0 35 80 87 132 1.05e-19 87.8
MS.gene31890.t1 MTR_1g035480 79.221 77 16 0 4 80 1 77 7.50e-39 134
MS.gene31890.t1 MTR_1g035540 56.897 116 37 2 83 198 1 103 1.61e-35 124
MS.gene31890.t1 MTR_1g033740 73.333 75 20 0 5 79 7 81 2.76e-34 123
MS.gene31890.t1 MTR_1g035500 68.421 76 24 0 5 80 10 85 3.95e-34 122
MS.gene31890.t1 MTR_1g035570 39.344 183 100 5 81 260 209 383 6.24e-31 119
MS.gene31890.t1 MTR_1g035490 35.437 206 101 7 81 260 118 317 1.87e-28 111
MS.gene31890.t1 MTR_1g035620 33.010 206 110 5 80 260 196 398 1.14e-21 94.0
MS.gene31890.t1 MTR_1g035620 24.638 276 168 11 16 262 5 269 6.70e-14 71.2
MS.gene31890.t1 MTR_1g035470 76.087 46 11 0 35 80 1 46 6.40e-18 78.6
MS.gene31890.t1 MTR_1g035640 47.826 92 46 2 81 172 202 291 1.54e-17 82.4
MS.gene31890.t1 MTR_1g035640 29.615 260 146 13 29 258 14 266 5.17e-15 74.7
MS.gene31890.t1 MTR_1g035510 26.383 235 115 7 35 224 1 222 2.80e-16 76.3
MS.gene31890.t1 MTR_1g050845 30.000 200 103 5 80 250 184 375 5.59e-15 75.1
MS.gene31890.t1 MTR_1g050845 41.538 65 37 1 16 79 5 69 1.85e-12 67.4
MS.gene31890.t1 MTR_5g044670 26.885 305 170 10 1 263 1 294 3.28e-14 71.6
MS.gene31890.t1 MTR_5g044670 34.375 96 56 2 81 173 224 315 8.84e-11 61.6
MS.gene31890.t1 MTR_1g035650 41.791 67 38 1 16 81 5 71 8.16e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 54 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTCACATGACAAATTTA+AGG 0.173779 1.2:-20177702 MS.gene31890:CDS
TATAATCCATACCTCGATTA+TGG 0.210635 1.2:-20177470 MS.gene31890:CDS
TTGCATTCTCTCACGAATTC+TGG 0.238243 1.2:+20177428 None:intergenic
TTAAACAGAGGATACCTATT+TGG 0.252919 1.2:-20178539 MS.gene31890:intron
GGGAATGGTTTCTTTGTTGT+TGG 0.314235 1.2:+20178288 None:intergenic
TTTGGAAGTCTAAGCGATAT+TGG 0.316363 1.2:+20178705 None:intergenic
GGTCTGAGTTCAAAATGAAT+TGG 0.350012 1.2:-20178680 MS.gene31890:CDS
TACAACGCGGTGACGATGTT+TGG 0.370214 1.2:-20178656 MS.gene31890:CDS
GAAATACCTTGAAAATGCTC+TGG 0.394859 1.2:+20178267 None:intergenic
CAAAATCAATCATGTGTTCA+AGG 0.400866 1.2:-20177362 MS.gene31890:intron
ACGATGTTTGGCTTCAGAAT+TGG 0.404471 1.2:-20178644 MS.gene31890:CDS
AGAGAATGCAAAGTAAAGAT+TGG 0.430681 1.2:-20177416 MS.gene31890:CDS
TTGGAAGTGTTGGTGAGGAC+AGG 0.439735 1.2:-20178470 MS.gene31890:CDS
ATAATCCATACCTCGATTAT+GGG 0.450089 1.2:-20177469 MS.gene31890:CDS
GTCTGAGTTCAAAATGAATT+GGG 0.455385 1.2:-20178679 MS.gene31890:CDS
ATAGTAATTGTGAATGAAAG+TGG 0.456460 1.2:+20178315 None:intergenic
AAGGAACATGACTTGAAAGT+TGG 0.470859 1.2:-20178372 MS.gene31890:CDS
TGTCTCTCTACGAATTTCCT+TGG 0.471061 1.2:+20178747 None:intergenic
ATTCAGTGGAGTTGAAAGTA+GGG 0.477979 1.2:-20177520 MS.gene31890:CDS
AGGAACATGGTTTGTAGAGG+TGG 0.484845 1.2:-20177495 MS.gene31890:CDS
CCTTGAAAATGCTCTGGGAA+TGG 0.485126 1.2:+20178273 None:intergenic
GATTATGGGTGGTTCACTAA+AGG 0.486734 1.2:-20177455 MS.gene31890:CDS
GGAACATGGTTTGTAGAGGT+GGG 0.494808 1.2:-20177494 MS.gene31890:CDS
TGAAAGTAGGGGAAGGAACA+TGG 0.498346 1.2:-20177508 MS.gene31890:CDS
TTGCGAGGGAAGGCAACGAT+TGG 0.514402 1.2:-20178489 MS.gene31890:CDS
GATTCAGTGGAGTTGAAAGT+AGG 0.514511 1.2:-20177521 MS.gene31890:CDS
ATATCGCTTAGACTTCCAAA+TGG 0.516695 1.2:-20178702 MS.gene31890:CDS
TTCAGTGGAGTTGAAAGTAG+GGG 0.529294 1.2:-20177519 MS.gene31890:CDS
GGAAATTCGTAGAGAGACAT+TGG 0.530097 1.2:-20178743 MS.gene31890:CDS
TTATGCCTCTTCAACAGACT+TGG 0.532458 1.2:+20177557 None:intergenic
TACTGCCAAGTCTGTTGAAG+AGG 0.535316 1.2:-20177562 MS.gene31890:CDS
TATATTTAGCGGAGATTCAG+TGG 0.538001 1.2:-20177534 MS.gene31890:CDS
AAGAGGCATAATATATTTAG+CGG 0.538890 1.2:-20177545 MS.gene31890:CDS
AAATACCTTGAAAATGCTCT+GGG 0.549451 1.2:+20178268 None:intergenic
AACCACCCATAATCGAGGTA+TGG 0.557688 1.2:+20177464 None:intergenic
TGTTCTTGCAGATGATTCCA+AGG 0.559130 1.2:-20178764 MS.gene31890:intron
TTTGGCTTCAGAATTGGAAG+AGG 0.559399 1.2:-20178638 MS.gene31890:intron
TATCGCTTAGACTTCCAAAT+GGG 0.562651 1.2:-20178701 MS.gene31890:CDS
TGGAAGTGTTGGTGAGGACA+GGG 0.564743 1.2:-20178469 MS.gene31890:CDS
AAGGCAACGATTGGAAGTGT+TGG 0.567276 1.2:-20178480 MS.gene31890:CDS
ATGGGTGGTTCACTAAAGGT+TGG 0.570183 1.2:-20177451 MS.gene31890:CDS
GGACGTGGCAGTGAAGCTCA+TGG 0.611140 1.2:-20179802 MS.gene31890:CDS
GGAAGGAACATGGTTTGTAG+AGG 0.613086 1.2:-20177498 MS.gene31890:CDS
TACATGAATGAGTTATTGCG+AGG 0.621321 1.2:-20178504 MS.gene31890:CDS
AACGATTGGAAGTGTTGGTG+AGG 0.627439 1.2:-20178475 MS.gene31890:CDS
TCGAGTGTTCACAATGGACG+TGG 0.628713 1.2:-20179817 MS.gene31890:CDS
ATCCATACCTCGATTATGGG+TGG 0.639230 1.2:-20177466 MS.gene31890:CDS
GAATGAGTTATTGCGAGGGA+AGG 0.643476 1.2:-20178499 MS.gene31890:CDS
GTGGAGTTGAAAGTAGGGGA+AGG 0.644645 1.2:-20177515 MS.gene31890:CDS
GTGTTGGTGAGGACAGGGCA+TGG 0.648324 1.2:-20178464 MS.gene31890:CDS
ACATGAATGAGTTATTGCGA+GGG 0.670475 1.2:-20178503 MS.gene31890:CDS
TAGTGAACCACCCATAATCG+AGG 0.694278 1.2:+20177459 None:intergenic
ATGATGTCGAGTGTTCACAA+TGG 0.758516 1.2:-20179823 MS.gene31890:CDS
AAAATGAATTGGGTACAACG+CGG 0.771281 1.2:-20178669 MS.gene31890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAATGAATAAGAAAAA+AGG + chr1.2:20176760-20176779 None:intergenic 15.0%
!! AACAAAAATAGATTGAAATT+TGG + chr1.2:20179302-20179321 None:intergenic 15.0%
!! ACAAAAATAGATTGAAATTT+GGG + chr1.2:20179301-20179320 None:intergenic 15.0%
!! TTTCTTATAATAATTGAGAA+TGG - chr1.2:20177418-20177437 MS.gene31890:CDS 15.0%
!!! AAAATTTTCATGATATAAAG+TGG + chr1.2:20179493-20179512 None:intergenic 15.0%
!!! TTATAATTTCTTTGATTTCA+TGG - chr1.2:20177091-20177110 MS.gene31890:intron 15.0%
!! ATAGCATATCAATAACAAAA+TGG + chr1.2:20178466-20178485 None:intergenic 20.0%
!! ATATCAATAACAAAATGGAT+TGG + chr1.2:20178461-20178480 None:intergenic 20.0%
!! ATCAATATCTATTTAAACAG+AGG - chr1.2:20177914-20177933 MS.gene31890:intron 20.0%
!! ATGTATAAAGTAGTTAATGA+TGG - chr1.2:20179626-20179645 MS.gene31890:intron 20.0%
!! CAAAAATAGATTGAAATTTG+GGG + chr1.2:20179300-20179319 None:intergenic 20.0%
!! TACGGATTTATTATCATTAA+CGG - chr1.2:20177308-20177327 MS.gene31890:intron 20.0%
!! TTTATTATCATTAACGGAAT+TGG - chr1.2:20177314-20177333 MS.gene31890:intron 20.0%
!!! ATTTTAAGCAATGTATTGAT+TGG + chr1.2:20176965-20176984 None:intergenic 20.0%
!!! CAACAATGATATTTTGTTAT+TGG - chr1.2:20176988-20177007 MS.gene31890:intron 20.0%
!!! GGTTCTGAAATTTTAAATTT+TGG + chr1.2:20179279-20179298 None:intergenic 20.0%
!!! TATTCTTTTGAAAACCAAAT+AGG + chr1.2:20177943-20177962 None:intergenic 20.0%
!!! TTATTACAGGGTTTTAAAAA+TGG + chr1.2:20176797-20176816 None:intergenic 20.0%
! AACAAAGAAAACATTGTGTA+AGG + chr1.2:20178716-20178735 None:intergenic 25.0%
! AAGGTTTCAATTATTCTAGA+TGG - chr1.2:20179122-20179141 MS.gene31890:intron 25.0%
! AATGATAATAAATCCGTACA+TGG + chr1.2:20177306-20177325 None:intergenic 25.0%
! ACATGAAAGGTTATTATTAC+AGG + chr1.2:20176810-20176829 None:intergenic 25.0%
! AGACACAAAAAATAGATAGT+GGG + chr1.2:20179674-20179693 None:intergenic 25.0%
! AGTAGTATGTTTACATTACA+TGG + chr1.2:20178365-20178384 None:intergenic 25.0%
! ATAAAGTAGTTAATGATGGT+GGG - chr1.2:20179630-20179649 MS.gene31890:intron 25.0%
! ATAGTAATTGTGAATGAAAG+TGG + chr1.2:20178153-20178172 None:intergenic 25.0%
! ATGACCAAAATCATTTGATA+CGG + chr1.2:20179241-20179260 None:intergenic 25.0%
! ATTCTATTGGACTTAAAATG+TGG - chr1.2:20177150-20177169 MS.gene31890:intron 25.0%
! CATAAATTGTTCTTCACAAA+TGG - chr1.2:20177047-20177066 MS.gene31890:intron 25.0%
! CATGAAAGGTTATTATTACA+GGG + chr1.2:20176809-20176828 None:intergenic 25.0%
! CATTACTAATTGAAACTCAT+TGG - chr1.2:20177668-20177687 MS.gene31890:intron 25.0%
! CTCTATAAATACTGCTAAAT+GGG + chr1.2:20179422-20179441 None:intergenic 25.0%
! GAATTCACATGACAAATTTA+AGG - chr1.2:20178763-20178782 MS.gene31890:intron 25.0%
! GCGAAAAATATTATGATTGA+CGG - chr1.2:20179369-20179388 MS.gene31890:intron 25.0%
! GTTGTATATTTGCTTCAATT+TGG - chr1.2:20177175-20177194 MS.gene31890:intron 25.0%
! TAAAAACAAACAACCATGTA+CGG - chr1.2:20177290-20177309 MS.gene31890:intron 25.0%
! TACAAGAAATCTGAACTAAT+TGG + chr1.2:20177498-20177517 None:intergenic 25.0%
! TAGACACAAAAAATAGATAG+TGG + chr1.2:20179675-20179694 None:intergenic 25.0%
! TAGAGCAAAAGTTGTATATT+TGG + chr1.2:20178426-20178445 None:intergenic 25.0%
! TATAAAGTAGTTAATGATGG+TGG - chr1.2:20179629-20179648 MS.gene31890:intron 25.0%
! TATGTTTACATTACATGGAT+AGG + chr1.2:20178360-20178379 None:intergenic 25.0%
! TGTTTGATACATATATGCTT+TGG - chr1.2:20177554-20177573 MS.gene31890:CDS 25.0%
! TTGGTTTCATTCTATTCTAT+TGG - chr1.2:20177137-20177156 MS.gene31890:intron 25.0%
! TTTGTCTTTATATCTCCAAA+TGG + chr1.2:20179588-20179607 None:intergenic 25.0%
!! AAGAGGCATAATATATTTAG+CGG - chr1.2:20178920-20178939 MS.gene31890:intron 25.0%
!! TAATTTCTTTGATTTCATGG+AGG - chr1.2:20177094-20177113 MS.gene31890:intron 25.0%
!!! TTGATATGCTATTTTGTACA+TGG - chr1.2:20178474-20178493 MS.gene31890:CDS 25.0%
AAATACCTTGAAAATGCTCT+GGG + chr1.2:20178200-20178219 None:intergenic 30.0%
ACATATTCCATATCTTCTAC+TGG + chr1.2:20178581-20178600 None:intergenic 30.0%
AGAGAATGCAAAGTAAAGAT+TGG - chr1.2:20179049-20179068 MS.gene31890:intron 30.0%
AGCAAAAGTTGTATATTTGG+TGG + chr1.2:20178423-20178442 None:intergenic 30.0%
AGCTAATTGAAACTTTGCTA+CGG - chr1.2:20179440-20179459 MS.gene31890:intron 30.0%
AGTAGAAGATATGGAATATG+TGG - chr1.2:20178580-20178599 MS.gene31890:intron 30.0%
ATAATCCATACCTCGATTAT+GGG - chr1.2:20178996-20179015 MS.gene31890:intron 30.0%
ATACATGGTTGACTGAAAAT+GGG + chr1.2:20176924-20176943 None:intergenic 30.0%
ATATCTCCAAATGGAAGAAA+AGG + chr1.2:20179579-20179598 None:intergenic 30.0%
CAAAATCAATCATGTGTTCA+AGG - chr1.2:20179103-20179122 MS.gene31890:intron 30.0%
GCTCTATAAATACTGCTAAA+TGG + chr1.2:20179423-20179442 None:intergenic 30.0%
GTAGAAGATATGGAATATGT+GGG - chr1.2:20178581-20178600 MS.gene31890:intron 30.0%
GTCTGAGTTCAAAATGAATT+GGG - chr1.2:20177786-20177805 MS.gene31890:intron 30.0%
TAAAACGCTAATCACATGAA+AGG + chr1.2:20176823-20176842 None:intergenic 30.0%
TATAATCCATACCTCGATTA+TGG - chr1.2:20178995-20179014 MS.gene31890:intron 30.0%
TATACATGGTTGACTGAAAA+TGG + chr1.2:20176925-20176944 None:intergenic 30.0%
TGGATTAAGCAAATGATTTG+TGG + chr1.2:20178403-20178422 None:intergenic 30.0%
TTAAACAGAGGATACCTATT+TGG - chr1.2:20177926-20177945 MS.gene31890:intron 30.0%
TTACAGATGTTGCAATGAAA+TGG + chr1.2:20179799-20179818 None:intergenic 30.0%
TTCTAAATGAGACGTATACA+TGG + chr1.2:20176939-20176958 None:intergenic 30.0%
TTGCAATGAAATGGACAATA+AGG + chr1.2:20179790-20179809 None:intergenic 30.0%
TTTGCCAAAATGATCTTAAC+CGG - chr1.2:20179724-20179743 MS.gene31890:intron 30.0%
! GATTAAGCAAATGATTTGTG+GGG + chr1.2:20178401-20178420 None:intergenic 30.0%
! GGATTAAGCAAATGATTTGT+GGG + chr1.2:20178402-20178421 None:intergenic 30.0%
! GTAACCGTATCAAATGATTT+TGG - chr1.2:20179234-20179253 MS.gene31890:intron 30.0%
! TTTTGTGACATCATTAGACA+AGG - chr1.2:20178787-20178806 MS.gene31890:intron 30.0%
AAAATGAATTGGGTACAACG+CGG - chr1.2:20177796-20177815 MS.gene31890:intron 35.0%
AAGGAACATGACTTGAAAGT+TGG - chr1.2:20178093-20178112 MS.gene31890:intron 35.0%
ACATGAATGAGTTATTGCGA+GGG - chr1.2:20177962-20177981 MS.gene31890:intron 35.0%
ACGTTGCATACTTGCTTATT+TGG - chr1.2:20177118-20177137 MS.gene31890:intron 35.0%
ACTGATTAAGCAAACTGTGT+TGG + chr1.2:20177582-20177601 None:intergenic 35.0%
ATATCGCTTAGACTTCCAAA+TGG - chr1.2:20177763-20177782 MS.gene31890:intron 35.0%
ATTCAGTGGAGTTGAAAGTA+GGG - chr1.2:20178945-20178964 MS.gene31890:intron 35.0%
CTAACAACAATATTAGGGAG+TGG + chr1.2:20179152-20179171 None:intergenic 35.0%
CTGATTAAGCAAACTGTGTT+GGG + chr1.2:20177581-20177600 None:intergenic 35.0%
GAAAAGGAGAGGATCATAAA+TGG + chr1.2:20179563-20179582 None:intergenic 35.0%
GAAATACCTTGAAAATGCTC+TGG + chr1.2:20178201-20178220 None:intergenic 35.0%
GGAGGCTAACAACAATATTA+GGG + chr1.2:20179157-20179176 None:intergenic 35.0%
GGTCTGAGTTCAAAATGAAT+TGG - chr1.2:20177785-20177804 MS.gene31890:intron 35.0%
TAATTGAAACTTTGCTACGG+TGG - chr1.2:20179443-20179462 MS.gene31890:intron 35.0%
TACATGAATGAGTTATTGCG+AGG - chr1.2:20177961-20177980 MS.gene31890:intron 35.0%
TACATGGTTGACTGAAAATG+GGG + chr1.2:20176923-20176942 None:intergenic 35.0%
TAGTTCTCCACTTAAAGAGT+TGG + chr1.2:20177397-20177416 None:intergenic 35.0%
TATATTTAGCGGAGATTCAG+TGG - chr1.2:20178931-20178950 MS.gene31890:intron 35.0%
TATCGCTTAGACTTCCAAAT+GGG - chr1.2:20177764-20177783 MS.gene31890:intron 35.0%
TCGGAATCAAAAGAAGAAGT+TGG + chr1.2:20178516-20178535 None:intergenic 35.0%
TTGCAACATCTGTAATTGCA+TGG - chr1.2:20179804-20179823 MS.gene31890:CDS 35.0%
TTTGGAAGTCTAAGCGATAT+TGG + chr1.2:20177763-20177782 None:intergenic 35.0%
TTTGTTCTTGTATATGCAGC+TGG - chr1.2:20178877-20178896 MS.gene31890:intron 35.0%
! ACACAGTTTGCTTAATCAGT+CGG - chr1.2:20177582-20177601 MS.gene31890:intron 35.0%
! ATGGAATATGTGGGCAATTT+TGG - chr1.2:20178590-20178609 MS.gene31890:intron 35.0%
! ATTTTGAACTCAGACCCATT+TGG + chr1.2:20177781-20177800 None:intergenic 35.0%
! GTGGATAAAGTGTATTGACA+CGG - chr1.2:20179462-20179481 MS.gene31890:intron 35.0%
!! TGGTTGGAAGTCATTTTCAA+AGG - chr1.2:20178074-20178093 MS.gene31890:intron 35.0%
AAGAGCTGCACAAAAACACA+TGG - chr1.2:20178626-20178645 MS.gene31890:intron 40.0%
AGATTCTCACACCACAATTG+TGG + chr1.2:20179195-20179214 None:intergenic 40.0%
ATGATGTCGAGTGTTCACAA+TGG - chr1.2:20176642-20176661 MS.gene31890:intron 40.0%
ATTAGTGCTACGCATGACTT+TGG - chr1.2:20177517-20177536 MS.gene31890:CDS 40.0%
CGGAGGCTAACAACAATATT+AGG + chr1.2:20179158-20179177 None:intergenic 40.0%
GATTATGGGTGGTTCACTAA+AGG - chr1.2:20179010-20179029 MS.gene31890:intron 40.0%
GATTCAGTGGAGTTGAAAGT+AGG - chr1.2:20178944-20178963 MS.gene31890:intron 40.0%
GCACAAAAACACATGGTCTA+AGG - chr1.2:20178633-20178652 MS.gene31890:intron 40.0%
GGAAATTCGTAGAGAGACAT+TGG - chr1.2:20177722-20177741 MS.gene31890:intron 40.0%
GGTCATACCAACTCTTTAAG+TGG - chr1.2:20177387-20177406 MS.gene31890:CDS 40.0%
TCAATGCAGCAAAGCATACA+TGG + chr1.2:20177260-20177279 None:intergenic 40.0%
TCCAAATGGAAGAAAAGGAG+AGG + chr1.2:20179574-20179593 None:intergenic 40.0%
TGTCTCTCTACGAATTTCCT+TGG + chr1.2:20177721-20177740 None:intergenic 40.0%
TGTTCTTGCAGATGATTCCA+AGG - chr1.2:20177701-20177720 MS.gene31890:CDS 40.0%
TTATGCCTCTTCAACAGACT+TGG + chr1.2:20178911-20178930 None:intergenic 40.0%
TTCAGTGGAGTTGAAAGTAG+GGG - chr1.2:20178946-20178965 MS.gene31890:intron 40.0%
TTGCATTCTCTCACGAATTC+TGG + chr1.2:20179040-20179059 None:intergenic 40.0%
! ACGATGTTTGGCTTCAGAAT+TGG - chr1.2:20177821-20177840 MS.gene31890:intron 40.0%
! CACACAAAGCGCTATATACA+TGG + chr1.2:20178837-20178856 None:intergenic 40.0%
! GAAGCCGGTTAAGATCATTT+TGG + chr1.2:20179731-20179750 None:intergenic 40.0%
! GATAAAGTGTATTGACACGG+TGG - chr1.2:20179465-20179484 MS.gene31890:intron 40.0%
! GGGAATGGTTTCTTTGTTGT+TGG + chr1.2:20178180-20178199 None:intergenic 40.0%
! TCCTCTCCTTTTCTTCCATT+TGG - chr1.2:20179570-20179589 MS.gene31890:intron 40.0%
! TTTGGCTTCAGAATTGGAAG+AGG - chr1.2:20177827-20177846 MS.gene31890:intron 40.0%
!! AGCAGTTTTGTAATGCAGGT+TGG - chr1.2:20178054-20178073 MS.gene31890:intron 40.0%
!! CAAGAGCAGTTTTGTAATGC+AGG - chr1.2:20178050-20178069 MS.gene31890:intron 40.0%
!! TATGTGGGCAATTTTGGAGA+AGG - chr1.2:20178596-20178615 MS.gene31890:intron 40.0%
!!! CTCGTTGGTTTTCTGTATGT+CGG + chr1.2:20178535-20178554 None:intergenic 40.0%
!!! GTTTTGTAATGCAGGTTGGT+TGG - chr1.2:20178058-20178077 MS.gene31890:intron 40.0%
AACCACCCATAATCGAGGTA+TGG + chr1.2:20179004-20179023 None:intergenic 45.0%
ACAGAAAACCAACGAGTCCA+AGG - chr1.2:20178539-20178558 MS.gene31890:intron 45.0%
ACCAAGTGATTGAGCACTAG+TGG + chr1.2:20177370-20177389 None:intergenic 45.0%
ACCACTAGTGCTCAATCACT+TGG - chr1.2:20177366-20177385 MS.gene31890:CDS 45.0%
ATATGCAGTTGTTGCGAAGC+CGG + chr1.2:20179746-20179765 None:intergenic 45.0%
ATCCATACCTCGATTATGGG+TGG - chr1.2:20178999-20179018 MS.gene31890:intron 45.0%
ATGGGTGGTTCACTAAAGGT+TGG - chr1.2:20179014-20179033 MS.gene31890:intron 45.0%
GAATGAGTTATTGCGAGGGA+AGG - chr1.2:20177966-20177985 MS.gene31890:intron 45.0%
GACAACGCCAGTAGAAGATA+TGG - chr1.2:20178571-20178590 MS.gene31890:intron 45.0%
GGAGAGGATCATAAATGGAG+AGG + chr1.2:20179558-20179577 None:intergenic 45.0%
TACTGCCAAGTCTGTTGAAG+AGG - chr1.2:20178903-20178922 MS.gene31890:intron 45.0%
TAGTGAACCACCCATAATCG+AGG + chr1.2:20179009-20179028 None:intergenic 45.0%
TGAAAGTAGGGGAAGGAACA+TGG - chr1.2:20178957-20178976 MS.gene31890:intron 45.0%
TGATATCGCCACCACAATTG+TGG - chr1.2:20179181-20179200 MS.gene31890:intron 45.0%
TTCTCACACCACAATTGTGG+TGG + chr1.2:20179192-20179211 None:intergenic 45.0%
! AAGGCAACGATTGGAAGTGT+TGG - chr1.2:20177985-20178004 MS.gene31890:intron 45.0%
! AGGAACATGGTTTGTAGAGG+TGG - chr1.2:20178970-20178989 MS.gene31890:intron 45.0%
! CTGATTTTCCTTGGACTCGT+TGG + chr1.2:20178550-20178569 None:intergenic 45.0%
! GGAACATGGTTTGTAGAGGT+GGG - chr1.2:20178971-20178990 MS.gene31890:intron 45.0%
! GGAAGGAACATGGTTTGTAG+AGG - chr1.2:20178967-20178986 MS.gene31890:intron 45.0%
! TTGTGGTGGCGATATCATTG+CGG + chr1.2:20179178-20179197 None:intergenic 45.0%
!! AACGATTGGAAGTGTTGGTG+AGG - chr1.2:20177990-20178009 MS.gene31890:intron 45.0%
!! CCATTCCCAGAGCATTTTCA+AGG - chr1.2:20178192-20178211 MS.gene31890:intron 45.0%
!! CCTTGAAAATGCTCTGGGAA+TGG + chr1.2:20178195-20178214 None:intergenic 45.0%
!! TGATGGTGGGATCTACTTAG+TGG - chr1.2:20179643-20179662 MS.gene31890:intron 45.0%
!!! GCGTTGTCACTGATTTTCCT+TGG + chr1.2:20178559-20178578 None:intergenic 45.0%
GGTGGGATCTACTTAGTGGT+AGG - chr1.2:20179647-20179666 MS.gene31890:intron 50.0%
GGTTAATGAGCGAATCGCTC+AGG + chr1.2:20177349-20177368 None:intergenic 50.0%
GTGGAGTTGAAAGTAGGGGA+AGG - chr1.2:20178950-20178969 MS.gene31890:intron 50.0%
TACAACGCGGTGACGATGTT+TGG - chr1.2:20177809-20177828 MS.gene31890:intron 50.0%
TCGAGTGTTCACAATGGACG+TGG - chr1.2:20176648-20176667 MS.gene31890:intron 50.0%
!! TGGAAGTGTTGGTGAGGACA+GGG - chr1.2:20177996-20178015 MS.gene31890:intron 50.0%
!! TTGGAAGTGTTGGTGAGGAC+AGG - chr1.2:20177995-20178014 MS.gene31890:intron 50.0%
TTGCGAGGGAAGGCAACGAT+TGG - chr1.2:20177976-20177995 MS.gene31890:intron 55.0%
TTTGCGCGCTCTCTCAGATG+TGG - chr1.2:20177850-20177869 MS.gene31890:intron 55.0%
! TGGTGGCGATATCATTGCGG+AGG + chr1.2:20179175-20179194 None:intergenic 55.0%
GGACGTGGCAGTGAAGCTCA+TGG - chr1.2:20176663-20176682 MS.gene31890:intron 60.0%
! GTGTTGGTGAGGACAGGGCA+TGG - chr1.2:20178001-20178020 MS.gene31890:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 20176636 20179851 20176636 ID=MS.gene31890
chr1.2 mRNA 20176636 20179851 20176636 ID=MS.gene31890.t1;Parent=MS.gene31890
chr1.2 exon 20179750 20179851 20179750 ID=MS.gene31890.t1.exon1;Parent=MS.gene31890.t1
chr1.2 CDS 20179750 20179851 20179750 ID=cds.MS.gene31890.t1;Parent=MS.gene31890.t1
chr1.2 exon 20178639 20178775 20178639 ID=MS.gene31890.t1.exon2;Parent=MS.gene31890.t1
chr1.2 CDS 20178639 20178775 20178639 ID=cds.MS.gene31890.t1;Parent=MS.gene31890.t1
chr1.2 exon 20178274 20178551 20178274 ID=MS.gene31890.t1.exon3;Parent=MS.gene31890.t1
chr1.2 CDS 20178274 20178551 20178274 ID=cds.MS.gene31890.t1;Parent=MS.gene31890.t1
chr1.2 exon 20177679 20177737 20177679 ID=MS.gene31890.t1.exon4;Parent=MS.gene31890.t1
chr1.2 CDS 20177679 20177737 20177679 ID=cds.MS.gene31890.t1;Parent=MS.gene31890.t1
chr1.2 exon 20177363 20177591 20177363 ID=MS.gene31890.t1.exon5;Parent=MS.gene31890.t1
chr1.2 CDS 20177363 20177591 20177363 ID=cds.MS.gene31890.t1;Parent=MS.gene31890.t1
chr1.2 exon 20176636 20176646 20176636 ID=MS.gene31890.t1.exon6;Parent=MS.gene31890.t1
chr1.2 CDS 20176636 20176646 20176636 ID=cds.MS.gene31890.t1;Parent=MS.gene31890.t1
Gene Sequence

>MS.gene31890

ATGAGCATGATGTCGAGTGTTCACAATGGACGTGGCAGTGAAGCTCATGGAATGCATTTCTATCTAACTATTCAACTTCGTCAGTTGCAAGATGCAGAGTTTGTAAGCATTTTCACTTCTTCCTTTTTTCTTATTCATTCATTTCTTTCGATTATTTTCCATTTTTAAAACCCTGTAATAATAACCTTTCATGTGATTAGCGTTTTAGTAAAGTTTATTCTTTCGATTATTTTAATTTTTACATTATTTAATAAACTTTGCTTCTTCTCAAGAAAAAAAAAAAACCCCATTTTCAGTCAACCATGTATACGTCTCATTTAGAAGCACCAATCAATACATTGCTTAAAATTTGCAACAATGATATTTTGTTATTGGAATTGATGAATGTTAAGATTTGAAAGTTGTTAAATTCATAAATTGTTCTTCACAAATGGAGAATCAAATGCTATTATTTCTTATAATTTCTTTGATTTCATGGAGGAACGTTGCATACTTGCTTATTTGGTTTCATTCTATTCTATTGGACTTAAAATGTGGATGTTGTATATTTGCTTCAATTTGGTACTGTATTCAACTTCATTTTCATTATTCAATGAAGTTTGCTTCGTATTAAAATAACAACCATGTATGCTTTGCTGCATTGATCATCATTACTAAAAACAAACAACCATGTACGGATTTATTATCATTAACGGAATTGGTTTTTCGCTCCTGAGCGATTCGCTCATTAACCACTAGTGCTCAATCACTTGGTCATACCAACTCTTTAAGTGGAGAACTAATTTCTTATAATAATTGAGAATGGAATGTTGCACACATACTTGCATTATGAGATGACTTGTGTGCATCTACTTGACTTCCAATTAGTTCAGATTTCTTGTATTAGTGCTACGCATGACTTTGGTTCTAAACTCATTTTGTTTGATACATATATGCTTTGGTCCCAACACAGTTTGCTTAATCAGTCGGTGTATTAATTGAATGAAGTTTGCTGCATTAATCACTTGATGTATGCTTTGCTGCATTAATCTTCATTACTAATTGAAACTCATTGGTTTTTGAAAATGTTCTTGCAGATGATTCCAAGGAAATTCGTAGAGAGACATTGGAAAGATGTATCAAATCCAATATCGCTTAGACTTCCAAATGGGTCTGAGTTCAAAATGAATTGGGTACAACGCGGTGACGATGTTTGGCTTCAGAATTGGAAGAGGTTTGCGCGCTCTCTCAGATGTGGAGATCTTGTAGTAATATCACTTAGTTCATGAATAAATTTTAATCAATATCTATTTAAACAGAGGATACCTATTTGGTTTTCAAAAGAATACATGAATGAGTTATTGCGAGGGAAGGCAACGATTGGAAGTGTTGGTGAGGACAGGGCATGGTACGTGACGTTAAACTTTGATAAAAGCAAGAGCAGTTTTGTAATGCAGGTTGGTTGGAAGTCATTTTCAAAGGAACATGACTTGAAAGTTGGTGATGTATGTAAATTTGATACGACTCAACGCGAACCACTTTCATTCACAATTACTATTATTCCAACAACAAAGAAACCATTCCCAGAGCATTTTCAAGGTATTTCTTTCATTATTATTATTTTCGAAAGATAAATGTTTTAATATAGTTAATTTTAATACATTTTATCAAAGTAAATAGTTTTAACTTGTCAACAAATAACAAACAATCATGTGTAATTTTTTTTTAAGATTTAAGTAATACCTATCCATGTAATGTAAACATACTACTCTTTGCTTTTAATCCCCACAAATCATTTGCTTAATCCACCAAATATACAACTTTTGCTCTACAACTCAACTTACCAATCCATTTTGTTATTGATATGCTATTTTGTACATGGCATTAGTAGATTTTCTCCAACTTCTTCTTTTGATTCCGACATACAGAAAACCAACGAGTCCAAGGAAAATCAGTGACAACGCCAGTAGAAGATATGGAATATGTGGGCAATTTTGGAGAAGGAAATTCAAAGAGCTGCACAAAAACACATGGTCTAAGGAGTATTCATCTTAATTTTATTTGTTGAAGTTTTATTGTGTACAATTCATGCAAATATCCTTACACAATGTTTTCTTTGTTCTTAATTACTGCAGATTCTGTAAGTACGAATTCACATGACAAATTTAAGGTTTTTGTGACATCATTAGACAAGGTATGAATAACATAAAATGTTGATACCATGTATATAGCGCTTTGTGTGTGAATGTGAATTTTTTTTAATTTGTTCTTGTATATGCAGCTGGTTGTACTGCCAAGTCTGTTGAAGAGGCATAATATATTTAGCGGAGATTCAGTGGAGTTGAAAGTAGGGGAAGGAACATGGTTTGTAGAGGTGGGTTATAATCCATACCTCGATTATGGGTGGTTCACTAAAGGTTGGCCAGAATTCGTGAGAGAATGCAAAGTAAAGATTGGAGACACTTGTTTGTTTGAGATGATTGATGTTCAAAATCAATCATGTGTTCAAGGTTTCAATTATTCTAGATGGAAAGCCACTCCCTAATATTGTTGTTAGCCTCCGCAATGATATCGCCACCACAATTGTGGTGTGAGAATCTGTCACGTGTACGATGAATCGTAACCGTATCAAATGATTTTGGTCATATTCAAATCTTTTCACCAAAATTTAAAATTTCAGAACCCCAAATTTCAATCTATTTTTGTTCTATTGACAAATATTATGATTGACAGTCACTCAACTCTGTATTTCAAGCGAAAAATATTATGATTGACGGTCTCTCAACTCTGTATTTCAAGCACATCCCATTTAGCAGTATTTATAGAGCTAATTGAAACTTTGCTACGGTGGATAAAGTGTATTGACACGGTGGTGCCACTTTATATCATGAAAATTTTAAATTATTGCATATCGCAATGTGCTTCACTTTGAGTGAAGATCCTCTCCATTTATGATCCTCTCCTTTTCTTCCATTTGGAGATATAAAGACAAAAAAAAAAAAATTGAAAAAATGTATAAAGTAGTTAATGATGGTGGGATCTACTTAGTGGTAGGACCCACTATCTATTTTTTGTGTCTATCTCTCTTCAAATTGCATCTTCTATTTATTTTGCCAAAATGATCTTAACCGGCTTCGCAACAACTGCATATGCAAACATGATTTAACGACAACCTTATTGTCCATTTCATTGCAACATCTGTAATTGCATGGACTCTTGATACCAGCTGCAAGCTAG
Protein sequence

>MS.gene31890.t1

MSMMSSVHNGRGSEAHGMHFYLTIQLRQLQDAEFMIPRKFVERHWKDVSNPISLRLPNGSEFKMNWVQRGDDVWLQNWKRIPIWFSKEYMNELLRGKATIGSVGEDRAWYVTLNFDKSKSSFVMQVGWKSFSKEHDLKVGDVCKFDTTQREPLSFTITIIPTTKKPFPEHFQDSVSTNSHDKFKVFVTSLDKLVVLPSLLKRHNIFSGDSVELKVGEGTWFVEVGYNPYLDYGWFTKGWPEFVRECKVKIGDTCLFEMIDVQNQSCVQAAS