AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene040686

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040686.t1 MTR_1g035570 73.318 446 63 5 1 439 1 397 0.0 610
MS.gene040686.t1 MTR_1g035490 73.006 326 75 4 116 440 19 332 1.19e-154 441
MS.gene040686.t1 MTR_1g035640 45.791 487 192 10 1 437 1 465 4.66e-127 376
MS.gene040686.t1 MTR_1g035620 42.729 447 205 11 1 435 1 408 4.62e-106 320
MS.gene040686.t1 MTR_1g050845 41.446 415 180 10 1 403 1 364 1.54e-86 281
MS.gene040686.t1 MTR_6g061070 36.304 460 240 15 14 436 27 470 2.12e-71 233
MS.gene040686.t1 MTR_1g035650 42.358 229 93 3 1 216 1 203 1.73e-50 170
MS.gene040686.t1 MTR_8g103940 27.729 458 283 16 14 435 48 493 1.24e-42 157
MS.gene040686.t1 MTR_1g108780 25.597 461 282 13 20 435 12 456 2.57e-35 136
MS.gene040686.t1 MTR_3g098790 33.333 294 169 10 14 296 22 299 9.92e-34 129
MS.gene040686.t1 MTR_7g050560 32.441 299 170 9 9 296 13 290 1.53e-32 125
MS.gene040686.t1 MTR_5g044670 30.034 293 189 7 14 300 25 307 3.16e-31 122
MS.gene040686.t1 MTR_7g050590 31.741 293 169 8 21 296 2 280 2.15e-30 119
MS.gene040686.t1 MTR_7g050710 30.696 316 170 12 9 296 13 307 3.44e-30 119
MS.gene040686.t1 MTR_1g035480 45.763 118 61 2 14 131 26 140 2.10e-28 110
MS.gene040686.t1 MTR_7g050720 31.481 324 168 11 9 296 10 315 5.12e-28 113
MS.gene040686.t1 MTR_3g061310 25.773 291 193 8 9 294 12 284 9.81e-28 112
MS.gene040686.t1 MTR_7g050580 30.769 299 175 8 9 296 13 290 1.18e-27 112
MS.gene040686.t1 MTR_3g061350 27.703 296 180 8 9 294 12 283 4.35e-27 110
MS.gene040686.t1 MTR_3g061340 25.342 292 182 9 9 294 12 273 2.39e-26 107
MS.gene040686.t1 MTR_1g033740 34.756 164 90 3 14 177 31 177 3.27e-26 105
MS.gene040686.t1 MTR_1g035510 32.444 225 134 7 21 239 2 214 5.21e-26 105
MS.gene040686.t1 MTR_3g061370 26.689 296 183 8 9 294 9 280 1.76e-25 105
MS.gene040686.t1 MTR_3g061320 25.773 291 187 9 9 294 12 278 6.39e-25 103
MS.gene040686.t1 MTR_1g035500 43.220 118 64 2 14 131 34 148 1.03e-24 100
MS.gene040686.t1 MTR_1g035460 25.185 405 254 14 21 386 2 396 3.84e-23 100
MS.gene040686.t1 MTR_4g119990 28.713 303 192 11 9 294 15 310 4.77e-22 97.4
MS.gene040686.t1 MTR_3g061330 27.354 223 131 6 9 222 12 212 3.82e-21 92.8
MS.gene040686.t1 MTR_1g035470 40.187 107 61 2 21 127 2 105 3.99e-21 89.7
MS.gene040686.t1 MTR_6g043890 25.887 282 184 9 13 282 23 291 1.59e-20 92.8
MS.gene040686.t1 MTR_1g035520 27.000 300 188 7 21 294 88 382 4.70e-20 91.7
MS.gene040686.t1 MTR_1g035520 37.607 117 69 3 324 436 267 383 3.22e-14 74.3
MS.gene040686.t1 MTR_3g061290 31.902 163 97 5 9 165 12 166 3.29e-19 85.9
MS.gene040686.t1 MTR_1g034210 23.677 359 202 13 6 296 4 358 1.42e-13 72.4
MS.gene040686.t1 MTR_7g050640 42.202 109 53 4 5 103 7 115 1.54e-13 67.4
MS.gene040686.t1 MTR_4g068320 35.644 101 59 2 7 101 4 104 2.76e-12 68.6
MS.gene040686.t1 MTR_3g005480 21.769 294 158 8 14 297 30 261 5.37e-12 66.2
MS.gene040686.t1 MTR_3g005490 21.160 293 164 7 14 299 30 262 1.70e-11 64.7
MS.gene040686.t1 MTR_1g034240 32.432 111 68 3 7 110 5 115 4.67e-11 64.7
MS.gene040686.t1 MTR_1g035440 35.165 91 56 2 14 101 24 114 9.17e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040686.t1 AT3G18990 26.686 341 197 13 7 299 4 339 3.94e-21 94.7
MS.gene040686.t1 AT3G18990 26.923 338 194 13 7 296 4 336 1.06e-20 93.2

Find 75 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACACCGTTTGGAAATTTA+AGG 0.151014 1.2:+34096914 None:intergenic
GCAAAATCACCTGAGAATTT+TGG 0.185018 1.2:+34096511 None:intergenic
TATTTCTCCACATATTTCTT+AGG 0.222742 1.2:+34096964 None:intergenic
AAATATTGTGGAATTGAAAA+TGG 0.233869 1.2:-34095186 MS.gene040686:CDS
AAGAGATATCCATATTTAAA+AGG 0.239702 1.2:+34096820 None:intergenic
GTGTTTAATGTTTCAATTGT+AGG 0.249847 1.2:-34095017 MS.gene040686:CDS
CTTTGCGAATGGTTCGTTTC+CGG 0.252300 1.2:+34095728 None:intergenic
GCATAAAACATTCAAGGTTT+TGG 0.259758 1.2:-34095356 MS.gene040686:CDS
TTAATGAAACTGCAACAATA+AGG 0.276341 1.2:-34095929 MS.gene040686:CDS
AGAAATATGTGGAGAAATAT+TGG 0.283749 1.2:-34096960 MS.gene040686:CDS
TGGAGAGTAATGGTGATATT+TGG 0.287546 1.2:-34096873 MS.gene040686:CDS
TTACACCATTGGCTATTTCT+TGG 0.301111 1.2:-34096068 MS.gene040686:intron
TTTGGAAATTTAAGGAATAT+AGG 0.302976 1.2:+34096922 None:intergenic
TTCATCAACAGATTTGATAT+TGG 0.305884 1.2:+34096723 None:intergenic
CATTAACAGCTTCAGATGTT+AGG 0.318603 1.2:+34096125 None:intergenic
ATAGTAACATTGAATGAAAT+TGG 0.319993 1.2:+34095759 None:intergenic
TCCTCTCATCAATCAACTTA+AGG 0.325864 1.2:+34095045 None:intergenic
ACATTGGAGGAACGTCTTCT+AGG 0.346380 1.2:-34095540 MS.gene040686:CDS
TTGGAAATTTAAGGAATATA+GGG 0.346499 1.2:+34096923 None:intergenic
TTAACTTTCAAATTCATTAG+TGG 0.350653 1.2:-34096799 MS.gene040686:CDS
TGGCAAGAGAAAAGCGAGTA+TGG 0.354661 1.2:-34096551 MS.gene040686:CDS
TAATGAAACTGCAACAATAA+GGG 0.368216 1.2:-34095928 MS.gene040686:CDS
CCATTCGCAAAGAAATTACT+AGG 0.386228 1.2:-34095717 MS.gene040686:intron
TGGTAAGAGTGTTGCAAAGA+AGG 0.395122 1.2:-34095566 MS.gene040686:CDS
ATAATTTATTTCTAAAGTAT+TGG 0.398912 1.2:+34096747 None:intergenic
AATATTGTGGAATTGAAAAT+GGG 0.408122 1.2:-34095185 MS.gene040686:CDS
AATTATTATCAGAGTCTTTG+TGG 0.412362 1.2:-34095137 MS.gene040686:CDS
AAAGAAGGCAAAGTGGAGAT+TGG 0.415515 1.2:-34095080 MS.gene040686:CDS
AAGATTATCCTATGAAAATC+TGG 0.419859 1.2:+34097137 None:intergenic
GTGGTGGATGGAAAATATTC+AGG 0.420444 1.2:-34095839 MS.gene040686:CDS
TGGAGAAAATTTATGAAAGA+AGG 0.431214 1.2:-34095095 MS.gene040686:CDS
GATGAAGCATAAAACATTCA+AGG 0.432143 1.2:-34095362 MS.gene040686:CDS
AAATGCCAAAGCAAGCTAAA+AGG 0.432567 1.2:-34096582 MS.gene040686:CDS
CAAGCTAAAAGGACAAGAAA+TGG 0.436835 1.2:-34096571 MS.gene040686:CDS
CAAAGTAGCAATGGTGAAGA+AGG 0.457353 1.2:-34096158 MS.gene040686:CDS
GATGACAAGGTTATAAGAAA+GGG 0.472513 1.2:-34095597 MS.gene040686:intron
TGTCATTATAACTTCAAAAG+AGG 0.475259 1.2:+34096096 None:intergenic
CGATGACAAGGTTATAAGAA+AGG 0.476820 1.2:-34095598 MS.gene040686:intron
GAGGTGAGTTTGAGATATTA+TGG 0.477793 1.2:-34095885 MS.gene040686:CDS
CCTAGTAATTTCTTTGCGAA+TGG 0.482285 1.2:+34095717 None:intergenic
CTCTTCATGACTTTCTTCTG+TGG 0.498976 1.2:+34096642 None:intergenic
CCGAAGGAGTTTATGAAAAG+AGG 0.504433 1.2:-34095218 MS.gene040686:CDS
GTCATTATAACTTCAAAAGA+GGG 0.507540 1.2:+34096097 None:intergenic
AATATCAAATCTGTTGATGA+AGG 0.508408 1.2:-34096721 MS.gene040686:CDS
AATGTTACTATTACTCGTGC+CGG 0.509303 1.2:-34095747 MS.gene040686:CDS
ACCACCCAACCAAAATTCTC+AGG 0.510316 1.2:-34096520 MS.gene040686:intron
TTTGGTGAAGAACACAGAAC+CGG 0.529435 1.2:-34095338 MS.gene040686:intron
AGGATGTCATGAAAATATTG+TGG 0.531604 1.2:-34095198 MS.gene040686:CDS
ATATTCCTTAAATTTCCAAA+CGG 0.536219 1.2:-34096919 MS.gene040686:CDS
TGTTCTCTTGAAAACTCACT+TGG 0.542769 1.2:+34095963 None:intergenic
AGCTGAAGACACAGAAGAAG+AGG 0.546039 1.2:-34096698 MS.gene040686:CDS
CAATAAGGGTTGGTAATGAA+AGG 0.551596 1.2:-34095914 MS.gene040686:CDS
ATGACACAATCTTACACCAT+TGG 0.553408 1.2:-34096079 MS.gene040686:CDS
GTAAATTTGAGATGATTCGA+CGG 0.557247 1.2:-34095785 MS.gene040686:CDS
GTATTTGCAGTGTGTACCGA+AGG 0.559027 1.2:-34095234 MS.gene040686:intron
GCTGCAGATTCAGCAAAGGT+TGG 0.561554 1.2:-34095115 MS.gene040686:CDS
AATGTGGTATGGGTGGTGGA+TGG 0.565938 1.2:-34095851 MS.gene040686:CDS
GAAACTGCAACAATAAGGGT+TGG 0.581562 1.2:-34095924 MS.gene040686:CDS
TGATGACAGTTCAGATGAGG+TGG 0.583984 1.2:-34096605 MS.gene040686:CDS
GAGGGTTCCTAAGAAATATG+TGG 0.594786 1.2:-34096971 MS.gene040686:CDS
ATTTATGAAAGAAGGCAAAG+TGG 0.595070 1.2:-34095087 MS.gene040686:CDS
TGTGGCTGCAGATTCAGCAA+AGG 0.596137 1.2:-34095119 MS.gene040686:CDS
TCCTTAAGTTGATTGATGAG+AGG 0.601248 1.2:-34095046 MS.gene040686:CDS
AGGTAGTAACAAAGTAGCAA+TGG 0.603454 1.2:-34096167 MS.gene040686:CDS
TGAAAATGGGGAGAAAGTCA+TGG 0.612079 1.2:-34095172 MS.gene040686:CDS
GGTTGGTAATGAAAGGAGTG+TGG 0.615653 1.2:-34095907 MS.gene040686:CDS
TATGTGGAGAAATATTGGAA+AGG 0.617787 1.2:-34096955 MS.gene040686:CDS
GTTGCAAAGAAGGAAGACAT+TGG 0.622416 1.2:-34095556 MS.gene040686:CDS
GCAAAGAAGGAAGACATTGG+AGG 0.630671 1.2:-34095553 MS.gene040686:CDS
ATATTGTGGAATTGAAAATG+GGG 0.634099 1.2:-34095184 MS.gene040686:CDS
ATGACAAGGTTATAAGAAAG+GGG 0.638628 1.2:-34095596 MS.gene040686:intron
GCTGAAGACACAGAAGAAGA+GGG 0.643743 1.2:-34096697 MS.gene040686:CDS
AAGTGATGACAGTTCAGATG+AGG 0.649994 1.2:-34096608 MS.gene040686:CDS
ACTTACCAAGAAATAGCCAA+TGG 0.650241 1.2:+34096063 None:intergenic
TGGTAATGAAAGGAGTGTGG+AGG 0.650568 1.2:-34095904 MS.gene040686:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATATAATTTTTTTTTT+TGG - chr1.2:34095845-34095864 MS.gene040686:CDS 0.0%
!!! ATAATTTATTTCTAAAGTAT+TGG + chr1.2:34095415-34095434 None:intergenic 10.0%
!!! ATATAATTTTTTTTTTTGGT+AGG - chr1.2:34095849-34095868 MS.gene040686:CDS 10.0%
!!! ATATTTGGTTTCAAAAAAAT+TGG - chr1.2:34095301-34095320 MS.gene040686:intron 15.0%
!!! TATTTGGTTTCAAAAAAATT+GGG - chr1.2:34095302-34095321 MS.gene040686:intron 15.0%
!!! TGTTGAACAAAAAATATTTT+GGG - chr1.2:34095263-34095282 MS.gene040686:intron 15.0%
!!! TTTTATTTAATTAATCCTAC+CGG + chr1.2:34096843-34096862 None:intergenic 15.0%
!! AAATATTGTGGAATTGAAAA+TGG - chr1.2:34096973-34096992 MS.gene040686:CDS 20.0%
!! AACAATGATACATAAACAAT+AGG + chr1.2:34095126-34095145 None:intergenic 20.0%
!! AAGAGATATCCATATTTAAA+AGG + chr1.2:34095342-34095361 None:intergenic 20.0%
!! AATATTGTGGAATTGAAAAT+GGG - chr1.2:34096974-34096993 MS.gene040686:intron 20.0%
!! ACAATGATACATAAACAATA+GGG + chr1.2:34095125-34095144 None:intergenic 20.0%
!! ATAGTAACATTGAATGAAAT+TGG + chr1.2:34096403-34096422 None:intergenic 20.0%
!! ATATTCCTTAAATTTCCAAA+CGG - chr1.2:34095240-34095259 MS.gene040686:intron 20.0%
!! TTAACTTTCAAATTCATTAG+TGG - chr1.2:34095360-34095379 MS.gene040686:CDS 20.0%
!! TTGGAAATTTAAGGAATATA+GGG + chr1.2:34095239-34095258 None:intergenic 20.0%
!! TTTGGAAATTTAAGGAATAT+AGG + chr1.2:34095240-34095259 None:intergenic 20.0%
!!! GTGTTGAACAAAAAATATTT+TGG - chr1.2:34095262-34095281 MS.gene040686:intron 20.0%
!!! TATTTTAAGGTGAAGATATT+TGG - chr1.2:34095387-34095406 MS.gene040686:intron 20.0%
! AAATAGTTAATGCCTAAACT+TGG - chr1.2:34095968-34095987 MS.gene040686:CDS 25.0%
! AAGATTATCCTATGAAAATC+TGG + chr1.2:34095025-34095044 None:intergenic 25.0%
! AATTATTATCAGAGTCTTTG+TGG - chr1.2:34097022-34097041 MS.gene040686:intron 25.0%
! AGAAATATGTGGAGAAATAT+TGG - chr1.2:34095199-34095218 MS.gene040686:CDS 25.0%
! ATATTGTGGAATTGAAAATG+GGG - chr1.2:34096975-34096994 MS.gene040686:intron 25.0%
! GTCATTATAACTTCAAAAGA+GGG + chr1.2:34096065-34096084 None:intergenic 25.0%
! GTGTTTAATGTTTCAATTGT+AGG - chr1.2:34097142-34097161 MS.gene040686:CDS 25.0%
! TAATGAAACTGCAACAATAA+GGG - chr1.2:34096231-34096250 MS.gene040686:intron 25.0%
! TATTTCTCCACATATTTCTT+AGG + chr1.2:34095198-34095217 None:intergenic 25.0%
! TGGAGAAAATTTATGAAAGA+AGG - chr1.2:34097064-34097083 MS.gene040686:intron 25.0%
! TGTCATTATAACTTCAAAAG+AGG + chr1.2:34096066-34096085 None:intergenic 25.0%
! TTAATGAAACTGCAACAATA+AGG - chr1.2:34096230-34096249 MS.gene040686:intron 25.0%
! TTCATCAACAGATTTGATAT+TGG + chr1.2:34095439-34095458 None:intergenic 25.0%
!! AATATCAAATCTGTTGATGA+AGG - chr1.2:34095438-34095457 MS.gene040686:intron 25.0%
!! CAAGAAAATTTTCTTTTGGA+CGG + chr1.2:34096647-34096666 None:intergenic 25.0%
!! CCAAAAGAAAATTTTCTTGA+GGG - chr1.2:34096648-34096667 MS.gene040686:CDS 25.0%
!! TCCAAAAGAAAATTTTCTTG+AGG - chr1.2:34096647-34096666 MS.gene040686:CDS 25.0%
!! TTTGCAAAGCCTTTTAAATA+TGG - chr1.2:34095330-34095349 MS.gene040686:intron 25.0%
!!! CATTAGTGGATCATATTTTA+AGG - chr1.2:34095374-34095393 MS.gene040686:CDS 25.0%
!!! TACTTTTAAGAGTTATGCAA+TGG - chr1.2:34095749-34095768 MS.gene040686:CDS 25.0%
!!! TCTCTTTTTTTGGTAGATTT+AGG - chr1.2:34095671-34095690 MS.gene040686:intron 25.0%
!!! TGAACAAAAAATATTTTGGG+TGG - chr1.2:34095266-34095285 MS.gene040686:intron 25.0%
AGGATGTCATGAAAATATTG+TGG - chr1.2:34096961-34096980 MS.gene040686:CDS 30.0%
ATGACAAGGTTATAAGAAAG+GGG - chr1.2:34096563-34096582 MS.gene040686:CDS 30.0%
ATTTATGAAAGAAGGCAAAG+TGG - chr1.2:34097072-34097091 MS.gene040686:intron 30.0%
GATGAAGCATAAAACATTCA+AGG - chr1.2:34096797-34096816 MS.gene040686:CDS 30.0%
GATGACAAGGTTATAAGAAA+GGG - chr1.2:34096562-34096581 MS.gene040686:CDS 30.0%
GTCATCGACAAAAGAAATAA+AGG + chr1.2:34096548-34096567 None:intergenic 30.0%
TATGTGGAGAAATATTGGAA+AGG - chr1.2:34095204-34095223 MS.gene040686:CDS 30.0%
! AACATGTTCCAGATTTTCAT+AGG - chr1.2:34095014-34095033 MS.gene040686:CDS 30.0%
! CCCTCAAGAAAATTTTCTTT+TGG + chr1.2:34096651-34096670 None:intergenic 30.0%
! GCATAAAACATTCAAGGTTT+TGG - chr1.2:34096803-34096822 MS.gene040686:CDS 30.0%
! GTAAATTTGAGATGATTCGA+CGG - chr1.2:34096374-34096393 MS.gene040686:intron 30.0%
! GTGATTTTGCTCTCTTTTTT+TGG - chr1.2:34095661-34095680 MS.gene040686:intron 30.0%
! GTTGCAATTTTATGTCTGAA+AGG - chr1.2:34095775-34095794 MS.gene040686:CDS 30.0%
! TAAACCATGATTTGAAACAG+TGG - chr1.2:34096170-34096189 MS.gene040686:intron 30.0%
! TATTTCTTTTGTCGATGACA+AGG - chr1.2:34096549-34096568 MS.gene040686:CDS 30.0%
!!! ATTTTTTGTTCAACACCGTT+TGG + chr1.2:34095258-34095277 None:intergenic 30.0%
!!! CTGAATTTTTTTGTTGCAGA+GGG - chr1.2:34095170-34095189 MS.gene040686:CDS 30.0%
!!! TCTGAATTTTTTTGTTGCAG+AGG - chr1.2:34095169-34095188 MS.gene040686:CDS 30.0%
AAATGCCAAAGCAAGCTAAA+AGG - chr1.2:34095577-34095596 MS.gene040686:CDS 35.0%
AATGTTACTATTACTCGTGC+CGG - chr1.2:34096412-34096431 MS.gene040686:intron 35.0%
ACCCAGAAAAAATGTGGTAT+GGG - chr1.2:34096298-34096317 MS.gene040686:intron 35.0%
ACTTACCAAGAAATAGCCAA+TGG + chr1.2:34096099-34096118 None:intergenic 35.0%
AGGTAGTAACAAAGTAGCAA+TGG - chr1.2:34095992-34096011 MS.gene040686:intron 35.0%
ATGACACAATCTTACACCAT+TGG - chr1.2:34096080-34096099 MS.gene040686:CDS 35.0%
CAACACCGTTTGGAAATTTA+AGG + chr1.2:34095248-34095267 None:intergenic 35.0%
CAAGCTAAAAGGACAAGAAA+TGG - chr1.2:34095588-34095607 MS.gene040686:CDS 35.0%
CATTAACAGCTTCAGATGTT+AGG + chr1.2:34096037-34096056 None:intergenic 35.0%
CCATTCGCAAAGAAATTACT+AGG - chr1.2:34096442-34096461 MS.gene040686:intron 35.0%
CCTAGTAATTTCTTTGCGAA+TGG + chr1.2:34096445-34096464 None:intergenic 35.0%
CGATGACAAGGTTATAAGAA+AGG - chr1.2:34096561-34096580 MS.gene040686:CDS 35.0%
GTAACCACTGTTTCAAATCA+TGG + chr1.2:34096177-34096196 None:intergenic 35.0%
TACCCAGAAAAAATGTGGTA+TGG - chr1.2:34096297-34096316 MS.gene040686:intron 35.0%
TATGGTACCCAGAAAAAATG+TGG - chr1.2:34096292-34096311 MS.gene040686:intron 35.0%
TCCTCTCATCAATCAACTTA+AGG + chr1.2:34097117-34097136 None:intergenic 35.0%
TGGAGAGTAATGGTGATATT+TGG - chr1.2:34095286-34095305 MS.gene040686:intron 35.0%
TGTTCTCTTGAAAACTCACT+TGG + chr1.2:34096199-34096218 None:intergenic 35.0%
TTATGCCTGTATTGTACAGA+AGG - chr1.2:34096765-34096784 MS.gene040686:CDS 35.0%
! CCTCTTTTCATAAACTCCTT+CGG + chr1.2:34096944-34096963 None:intergenic 35.0%
! GAGGTGAGTTTGAGATATTA+TGG - chr1.2:34096274-34096293 MS.gene040686:intron 35.0%
! GCAAAATCACCTGAGAATTT+TGG + chr1.2:34095651-34095670 None:intergenic 35.0%
! GTTTTATGCTTCATCACATC+AGG + chr1.2:34096792-34096811 None:intergenic 35.0%
! TATAAGAAAGGGGTCTTTTG+TGG - chr1.2:34096573-34096592 MS.gene040686:CDS 35.0%
!! AATCACCTGAGAATTTTGGT+TGG + chr1.2:34095647-34095666 None:intergenic 35.0%
!! ATATTTTGGGTGGAGAGTAA+TGG - chr1.2:34095276-34095295 MS.gene040686:intron 35.0%
!! CAATAAGGGTTGGTAATGAA+AGG - chr1.2:34096245-34096264 MS.gene040686:intron 35.0%
!! TCCTTAAGTTGATTGATGAG+AGG - chr1.2:34097113-34097132 MS.gene040686:intron 35.0%
!! TTACACCATTGGCTATTTCT+TGG - chr1.2:34096091-34096110 MS.gene040686:CDS 35.0%
!!! ACCCATACCACATTTTTTCT+GGG + chr1.2:34096302-34096321 None:intergenic 35.0%
!!! ATCACCTGAGAATTTTGGTT+GGG + chr1.2:34095646-34095665 None:intergenic 35.0%
AAAAAATGTGGTATGGGTGG+TGG - chr1.2:34096304-34096323 MS.gene040686:intron 40.0%
AAAGAAGGCAAAGTGGAGAT+TGG - chr1.2:34097079-34097098 MS.gene040686:intron 40.0%
AAGTGATGACAGTTCAGATG+AGG - chr1.2:34095551-34095570 MS.gene040686:CDS 40.0%
AGTTAATGCCTAAACTTGGC+AGG - chr1.2:34095972-34095991 MS.gene040686:CDS 40.0%
CAAAGTAGCAATGGTGAAGA+AGG - chr1.2:34096001-34096020 MS.gene040686:intron 40.0%
CAGAAAAAATGTGGTATGGG+TGG - chr1.2:34096301-34096320 MS.gene040686:intron 40.0%
CCGAAGGAGTTTATGAAAAG+AGG - chr1.2:34096941-34096960 MS.gene040686:CDS 40.0%
CTCTTCATGACTTTCTTCTG+TGG + chr1.2:34095520-34095539 None:intergenic 40.0%
GAAACTGCAACAATAAGGGT+TGG - chr1.2:34096235-34096254 MS.gene040686:intron 40.0%
GAGGGTTCCTAAGAAATATG+TGG - chr1.2:34095188-34095207 MS.gene040686:CDS 40.0%
GTTGCAAAGAAGGAAGACAT+TGG - chr1.2:34096603-34096622 MS.gene040686:CDS 40.0%
TGAAAATGGGGAGAAAGTCA+TGG - chr1.2:34096987-34097006 MS.gene040686:intron 40.0%
TGTTACTACCTGCCAAGTTT+AGG + chr1.2:34095983-34096002 None:intergenic 40.0%
TTTGGTGAAGAACACAGAAC+CGG - chr1.2:34096821-34096840 MS.gene040686:CDS 40.0%
!! GTGGTGGATGGAAAATATTC+AGG - chr1.2:34096320-34096339 MS.gene040686:intron 40.0%
!! TGGTAAGAGTGTTGCAAAGA+AGG - chr1.2:34096593-34096612 MS.gene040686:CDS 40.0%
!!! CACCCATACCACATTTTTTC+TGG + chr1.2:34096303-34096322 None:intergenic 40.0%
!!! CTTGTCCTTTTAGCTTGCTT+TGG + chr1.2:34095585-34095604 None:intergenic 40.0%
ACATTGGAGGAACGTCTTCT+AGG - chr1.2:34096619-34096638 MS.gene040686:CDS 45.0%
ACCACCCAACCAAAATTCTC+AGG - chr1.2:34095639-34095658 MS.gene040686:intron 45.0%
AGCTGAAGACACAGAAGAAG+AGG - chr1.2:34095461-34095480 MS.gene040686:intron 45.0%
CAGGACCTTCTGTACAATAC+AGG + chr1.2:34096773-34096792 None:intergenic 45.0%
CTTTGCGAATGGTTCGTTTC+CGG + chr1.2:34096434-34096453 None:intergenic 45.0%
GCAAAGAAGGAAGACATTGG+AGG - chr1.2:34096606-34096625 MS.gene040686:CDS 45.0%
GCTGAAGACACAGAAGAAGA+GGG - chr1.2:34095462-34095481 MS.gene040686:intron 45.0%
GTATTTGCAGTGTGTACCGA+AGG - chr1.2:34096925-34096944 MS.gene040686:CDS 45.0%
TGATGACAGTTCAGATGAGG+TGG - chr1.2:34095554-34095573 MS.gene040686:CDS 45.0%
TGGCAAGAGAAAAGCGAGTA+TGG - chr1.2:34095608-34095627 MS.gene040686:intron 45.0%
! TGGTAATGAAAGGAGTGTGG+AGG - chr1.2:34096255-34096274 MS.gene040686:intron 45.0%
!! GGTTGGTAATGAAAGGAGTG+TGG - chr1.2:34096252-34096271 MS.gene040686:intron 45.0%
!!! ACCTGAGAATTTTGGTTGGG+TGG + chr1.2:34095643-34095662 None:intergenic 45.0%
!! AAAAATAATAAATACTTAAT+TGG - chr1.2:34095899-34095918 MS.gene040686:CDS 5.0%
GCTGCAGATTCAGCAAAGGT+TGG - chr1.2:34097044-34097063 MS.gene040686:intron 50.0%
GTGAAGAACACAGAACCGGT+AGG - chr1.2:34096825-34096844 MS.gene040686:CDS 50.0%
TGTGGCTGCAGATTCAGCAA+AGG - chr1.2:34097040-34097059 MS.gene040686:intron 50.0%
!! AATGTGGTATGGGTGGTGGA+TGG - chr1.2:34096308-34096327 MS.gene040686:intron 50.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 34095004 34097177 34095004 ID=MS.gene040686
chr1.2 mRNA 34095004 34097177 34095004 ID=MS.gene040686.t1;Parent=MS.gene040686
chr1.2 exon 34097121 34097177 34097121 ID=MS.gene040686.t1.exon1;Parent=MS.gene040686.t1
chr1.2 CDS 34097121 34097177 34097121 ID=cds.MS.gene040686.t1;Parent=MS.gene040686.t1
chr1.2 exon 34096521 34096992 34096521 ID=MS.gene040686.t1.exon2;Parent=MS.gene040686.t1
chr1.2 CDS 34096521 34096992 34096521 ID=cds.MS.gene040686.t1;Parent=MS.gene040686.t1
chr1.2 exon 34096069 34096187 34096069 ID=MS.gene040686.t1.exon3;Parent=MS.gene040686.t1
chr1.2 CDS 34096069 34096187 34096069 ID=cds.MS.gene040686.t1;Parent=MS.gene040686.t1
chr1.2 exon 34095718 34095991 34095718 ID=MS.gene040686.t1.exon4;Parent=MS.gene040686.t1
chr1.2 CDS 34095718 34095991 34095718 ID=cds.MS.gene040686.t1;Parent=MS.gene040686.t1
chr1.2 exon 34095512 34095610 34095512 ID=MS.gene040686.t1.exon5;Parent=MS.gene040686.t1
chr1.2 CDS 34095512 34095610 34095512 ID=cds.MS.gene040686.t1;Parent=MS.gene040686.t1
chr1.2 exon 34095339 34095397 34095339 ID=MS.gene040686.t1.exon6;Parent=MS.gene040686.t1
chr1.2 CDS 34095339 34095397 34095339 ID=cds.MS.gene040686.t1;Parent=MS.gene040686.t1
chr1.2 exon 34095004 34095246 34095004 ID=MS.gene040686.t1.exon7;Parent=MS.gene040686.t1
chr1.2 CDS 34095004 34095246 34095004 ID=cds.MS.gene040686.t1;Parent=MS.gene040686.t1
Gene Sequence

>MS.gene040686

ATGTTAGTTCAACATGTTCCAGATTTTCATAGGATAATCTTGCAAGATAAGAAACTTGTAAGCATGTCGTAAAGAATTATTTTTGCAAATTTACATTATGTTTCATTTATTCTGTAAACCCTATTGTTTATGTATCATTGTTTTAAAAATGTTTAATGTATGATTTCTGAATTTTTTTGTTGCAGAGGGTTCCTAAGAAATATGTGGAGAAATATTGGAAAGGAATATCAAACCCTATATTCCTTAAATTTCCAAACGGTGTTGAACAAAAAATATTTTGGGTGGAGAGTAATGGTGATATTTGGTTTCAAAAAAATTGGGAAAGTTTTGCAAAGCCTTTTAAATATGGATATCTCTTAACTTTCAAATTCATTAGTGGATCATATTTTAAGGTGAAGATATTTGGTGCCAATACTTTAGAAATAAATTATGCCAATATCAAATCTGTTGATGAAGGAGCTGAAGACACAGAAGAAGAGGGTAAAGAAAGTGATGAATCAAGTGATAATGAAGCCACAGAAGAAAGTCATGAAGAGAGTGATGAATCAAGTGATGACAGTTCAGATGAGGTGGAAATGCCAAAGCAAGCTAAAAGGACAAGAAATGGCAAGAGAAAAGCGAGTATGGATTTTGACACCACCCAACCAAAATTCTCAGGTGATTTTGCTCTCTTTTTTTGGTAGATTTAGGCTTGTCTGTTACTCTATTTCTTTAAAAATAAATCACTTGTTTTTATAGAAATAATTACTTTTAAGAGTTATGCAATGGTTTGTTGCAATTTTATGTCTGAAAGGCTGAAAATCTTTGAAAGAAAAATGTCTTGAAGTGCTCAATAGATACTTTTTATATAATTTTTTTTTTTGGTAGGAAAAATATGTGATTTTTAATATGATAAAAAAATAATAAATACTTAATTGGTTTTCTTAAAATCTTCTAAAAACAATATCTAAATCAAATGTATAATAAATAGTTAATGCCTAAACTTGGCAGGTAGTAACAAAGTAGCAATGGTGAAGAAGGCTAGAAAATACCTAACATCTGAAGCTGTTAATGAGAATCCCTCTTTTGAAGTTATAATGACACAATCTTACACCATTGGCTATTTCTTGGTAAGTTTGCTATACAAAGTATCTATTAATTTAAGCTTTAATTAATAATATATCTACTAAACCATGATTTGAAACAGTGGTTACCAAGTGAGTTTTCAAGAGAACATTTGAAAGATTTTAATGAAACTGCAACAATAAGGGTTGGTAATGAAAGGAGTGTGGAGGTGAGTTTGAGATATTATGGTACCCAGAAAAAATGTGGTATGGGTGGTGGATGGAAAATATTCAGGCAAAAATATAATTTGCAAGTTGATGATGTTTGTAAATTTGAGATGATTCGACGGAGACCAATTTCATTCAATGTTACTATTACTCGTGCCGGAAACGAACCATTCGCAAAGAAATTACTAGGTTTTAATTCTTTCATTCTCTTTTATTTGCTTTTTTGTATGTTATAATTTTTTTATTTGATATTTGATTAAAATCTGTTTTCCTTTATTTCTTTTGTCGATGACAAGGTTATAAGAAAGGGGTCTTTTGTGGTAAGAGTGTTGCAAAGAAGGAAGACATTGGAGGAACGTCTTCTAGGAGCCGTCCAAAAGAAAATTTTCTTGAGGGTATTCTTCTAACTTTTTAAAGTTTTTAGATTTTACTATTGTAAAGTTTTTTTTCTTCATTTTATAAAAATAGATTAGATGATATCATTTTGTGTTTATGCCTGTATTGTACAGAAGGTCCTGATGTGATGAAGCATAAAACATTCAAGGTTTTGGTGAAGAACACAGAACCGGTAGGATTAATTAAATAAAATATAGTTACATATATAGATAGAGATGTTAGAACTACAAAATAAATAAATGATATTTTTGTTTGTATTTGCAGTGTGTACCGAAGGAGTTTATGAAAAGAGGATGTCATGAAAATATTGTGGAATTGAAAATGGGGAGAAAGTCATGGTTCGTAAAAGTCAATTATTATCAGAGTCTTTGTGGCTGCAGATTCAGCAAAGGTTGGAGAAAATTTATGAAAGAAGGCAAAGTGGAGATTGGAGATACTTGTCTCCTTAAGTTGATTGATGAGAGGAAATTTGTGTTTAATGTTTCAATTGTAGGAAAGAACCAATAA
Protein sequence

>MS.gene040686.t1

MLVQHVPDFHRIILQDKKLRVPKKYVEKYWKGISNPIFLKFPNGVEQKIFWVESNGDIWFQKNWESFAKPFKYGYLLTFKFISGSYFKVKIFGANTLEINYANIKSVDEGAEDTEEEGKESDESSDNEATEESHEESDESSDDSSDEVEMPKQAKRTRNGKRKASMDFDTTQPKFSGSNKVAMVKKARKYLTSEAVNENPSFEVIMTQSYTIGYFLWLPSEFSREHLKDFNETATIRVGNERSVEVSLRYYGTQKKCGMGGGWKIFRQKYNLQVDDVCKFEMIRRRPISFNVTITRAGNEPFAKKLLGYKKGVFCGKSVAKKEDIGGTSSRSRPKENFLEEGPDVMKHKTFKVLVKNTEPCVPKEFMKRGCHENIVELKMGRKSWFVKVNYYQSLCGCRFSKGWRKFMKEGKVEIGDTCLLKLIDERKFVFNVSIVGKNQ