Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034709.t1 | KEH40804.1 | 72.1 | 416 | 70 | 6 | 1 | 383 | 1 | 403 | 6.80E-151 | 543.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034709.t1 | Q2R9D2 | 29.5 | 129 | 81 | 4 | 142 | 262 | 263 | 389 | 3.9e-06 | 54.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034709.t1 | A0A072VFJ7 | 72.1 | 416 | 70 | 6 | 1 | 383 | 1 | 403 | 4.9e-151 | 543.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene034709.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034709.t1 | MTR_1g035570 | 71.635 | 416 | 72 | 6 | 1 | 383 | 1 | 403 | 0.0 | 572 |
| MS.gene034709.t1 | MTR_1g035490 | 66.366 | 333 | 75 | 8 | 70 | 376 | 9 | 330 | 4.09e-137 | 396 |
| MS.gene034709.t1 | MTR_1g035640 | 52.365 | 296 | 97 | 2 | 1 | 267 | 1 | 281 | 5.12e-95 | 293 |
| MS.gene034709.t1 | MTR_1g035640 | 39.062 | 128 | 50 | 2 | 248 | 375 | 366 | 465 | 1.80e-16 | 81.6 |
| MS.gene034709.t1 | MTR_1g035620 | 42.759 | 435 | 162 | 16 | 1 | 374 | 1 | 409 | 1.77e-90 | 280 |
| MS.gene034709.t1 | MTR_1g050845 | 40.898 | 401 | 140 | 13 | 1 | 341 | 1 | 364 | 5.23e-71 | 239 |
| MS.gene034709.t1 | MTR_6g061070 | 32.889 | 450 | 205 | 14 | 14 | 373 | 27 | 469 | 2.26e-54 | 188 |
| MS.gene034709.t1 | MTR_1g035650 | 38.117 | 223 | 81 | 6 | 1 | 186 | 1 | 203 | 2.06e-34 | 127 |
| MS.gene034709.t1 | MTR_1g108780 | 24.359 | 468 | 217 | 14 | 20 | 373 | 12 | 456 | 4.05e-24 | 104 |
| MS.gene034709.t1 | MTR_5g044670 | 26.000 | 300 | 176 | 8 | 14 | 278 | 25 | 313 | 4.04e-22 | 97.1 |
| MS.gene034709.t1 | MTR_7g050560 | 26.730 | 318 | 160 | 12 | 9 | 278 | 13 | 305 | 1.61e-19 | 89.4 |
| MS.gene034709.t1 | MTR_7g050710 | 26.183 | 317 | 155 | 10 | 8 | 266 | 12 | 307 | 3.18e-19 | 88.6 |
| MS.gene034709.t1 | MTR_3g061310 | 24.150 | 294 | 164 | 9 | 9 | 264 | 12 | 284 | 4.35e-18 | 84.7 |
| MS.gene034709.t1 | MTR_1g035480 | 35.404 | 161 | 56 | 5 | 14 | 142 | 26 | 170 | 9.17e-17 | 78.6 |
| MS.gene034709.t1 | MTR_8g103940 | 25.249 | 301 | 160 | 11 | 14 | 266 | 48 | 331 | 1.24e-15 | 79.3 |
| MS.gene034709.t1 | MTR_3g098790 | 25.081 | 307 | 161 | 12 | 14 | 273 | 22 | 306 | 1.57e-15 | 77.8 |
| MS.gene034709.t1 | MTR_7g050590 | 24.759 | 311 | 167 | 10 | 21 | 281 | 2 | 295 | 1.70e-15 | 77.0 |
| MS.gene034709.t1 | MTR_3g061350 | 23.810 | 294 | 164 | 8 | 9 | 264 | 12 | 283 | 1.94e-15 | 76.6 |
| MS.gene034709.t1 | MTR_1g035520 | 39.091 | 110 | 60 | 3 | 271 | 373 | 273 | 382 | 2.39e-15 | 77.8 |
| MS.gene034709.t1 | MTR_3g061340 | 23.368 | 291 | 159 | 8 | 9 | 264 | 12 | 273 | 8.36e-15 | 74.7 |
| MS.gene034709.t1 | MTR_1g033740 | 31.646 | 158 | 68 | 4 | 14 | 142 | 31 | 177 | 2.33e-14 | 72.0 |
| MS.gene034709.t1 | MTR_3g061370 | 22.867 | 293 | 168 | 8 | 9 | 264 | 9 | 280 | 7.95e-14 | 72.0 |
| MS.gene034709.t1 | MTR_7g050720 | 28.037 | 321 | 153 | 14 | 9 | 266 | 10 | 315 | 1.85e-12 | 68.6 |
| MS.gene034709.t1 | MTR_4g119990 | 24.161 | 298 | 182 | 9 | 9 | 264 | 15 | 310 | 5.59e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 76 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGAGGTTGATTCGTTTC+TGG | 0.111519 | 1.1:-43439973 | None:intergenic |
| GTGTTCAACAAGAAATATTT+TGG | 0.156532 | 1.1:+43438778 | MS.gene034709:CDS |
| GAACACCGTTTGGGAATTTA+AGG | 0.181202 | 1.1:-43438761 | None:intergenic |
| ATTATCTGTTTGTTCTAATA+AGG | 0.215815 | 1.1:+43441082 | MS.gene034709:CDS |
| GACATTATAATTTCAAAATA+AGG | 0.216590 | 1.1:-43439599 | None:intergenic |
| ATAGTAACATTGAATGAAAT+TGG | 0.236326 | 1.1:-43439936 | None:intergenic |
| TACGGGTTTGGTGAGAGTTT+TGG | 0.253800 | 1.1:+43441635 | MS.gene034709:CDS |
| AAATATTGTGGAGTTGAAAA+TGG | 0.256652 | 1.1:+43440881 | MS.gene034709:CDS |
| CGTAAGACATAAGGCTTCTT+TGG | 0.281681 | 1.1:-43441616 | None:intergenic |
| TATTTCTCCACATAAATCTT+AGG | 0.291278 | 1.1:-43438711 | None:intergenic |
| TTAAAGGGACTGCAACAATA+AGG | 0.291725 | 1.1:+43439766 | MS.gene034709:CDS |
| AGATTTATGTGGAGAAATAT+TGG | 0.302749 | 1.1:+43438715 | MS.gene034709:CDS |
| TTTGGGAATTTAAGGAATAT+AGG | 0.312034 | 1.1:-43438753 | None:intergenic |
| ATCATCAACAGATTTGATAT+TGG | 0.329912 | 1.1:-43438952 | None:intergenic |
| AGCCTTATGTCTTACGGGTT+TGG | 0.347824 | 1.1:+43441623 | MS.gene034709:CDS |
| ATTTCTTGTTGAACACCGTT+TGG | 0.353826 | 1.1:-43438771 | None:intergenic |
| TTGGGAATTTAAGGAATATA+GGG | 0.355557 | 1.1:-43438752 | None:intergenic |
| GTTGCCAAAGGCTGAGTATA+TGG | 0.363514 | 1.1:+43441578 | MS.gene034709:intron |
| AAAGAAGCCTTATGTCTTAC+GGG | 0.369158 | 1.1:+43441618 | MS.gene034709:CDS |
| TTATTAGAACAAACAGATAA+TGG | 0.369349 | 1.1:-43441080 | None:intergenic |
| TGGCAAAAGAAAAGTGAGTA+TGG | 0.382194 | 1.1:+43439106 | MS.gene034709:CDS |
| ATAATTTATTTCTAAAGTAT+TGG | 0.389854 | 1.1:-43438928 | None:intergenic |
| CAAAGAAGCCTTATGTCTTA+CGG | 0.405655 | 1.1:+43441617 | MS.gene034709:CDS |
| CTGCAGATTCAGTAAAGGTT+GGG | 0.409562 | 1.1:+43440953 | MS.gene034709:CDS |
| TTTCTTGTTGAACACCGTTT+GGG | 0.413820 | 1.1:-43438770 | None:intergenic |
| TAAAGGGACTGCAACAATAA+GGG | 0.414381 | 1.1:+43439767 | MS.gene034709:CDS |
| GCATAAAACATTCAAGGTTA+TGG | 0.414778 | 1.1:+43440705 | MS.gene034709:CDS |
| CGATTAAAGCTTCAGATGTT+GGG | 0.416702 | 1.1:-43439556 | None:intergenic |
| AAGATTATCCTATGAAAATC+TGG | 0.419859 | 1.1:-43438548 | None:intergenic |
| AAAGAATGCAAAGTGGAGAT+TGG | 0.426567 | 1.1:+43440987 | MS.gene034709:CDS |
| AAAACCTAGGAATTTCTTTG+AGG | 0.431350 | 1.1:-43439988 | None:intergenic |
| TTACGCCAATGGTTATTACT+TGG | 0.435703 | 1.1:+43439628 | MS.gene034709:CDS |
| ACCAAAGGAGTTTATGAAAA+GGG | 0.442898 | 1.1:+43440848 | MS.gene034709:CDS |
| GTCCAAGTCTCTTAGAGTCT+TGG | 0.444554 | 1.1:+43441671 | MS.gene034709:CDS |
| AAGTATTATGAGAGTATTTG+TGG | 0.445350 | 1.1:+43440930 | MS.gene034709:CDS |
| GTTGCCATATACTCAGCCTT+TGG | 0.447274 | 1.1:-43441582 | None:intergenic |
| CAAGTTCAAAGAACTAGAAA+TGG | 0.448280 | 1.1:+43439086 | MS.gene034709:CDS |
| TGTTCTCTTGAAAATATACT+TGG | 0.449633 | 1.1:-43439732 | None:intergenic |
| AATATTGTGGAGTTGAAAAT+GGG | 0.451536 | 1.1:+43440882 | MS.gene034709:CDS |
| TCGATTAAAGCTTCAGATGT+TGG | 0.454021 | 1.1:-43439557 | None:intergenic |
| TCAACCTCAAAGAAATTCCT+AGG | 0.461027 | 1.1:+43439984 | MS.gene034709:CDS |
| CAAAGTAGCCATGGTGAAGA+AGG | 0.465707 | 1.1:+43439523 | MS.gene034709:CDS |
| CACCAAACCCGTAAGACATA+AGG | 0.481008 | 1.1:-43441625 | None:intergenic |
| ATACAGGATCATAGTTATTG+AGG | 0.485707 | 1.1:-43441416 | None:intergenic |
| AGTGATGAAGTGAGTGATAA+GGG | 0.491546 | 1.1:+43439038 | MS.gene034709:CDS |
| GGACTCTGGAAGTGAGTTTG+AGG | 0.495977 | 1.1:+43439802 | MS.gene034709:CDS |
| GCAAATTTGAGATGATTCAA+AGG | 0.505985 | 1.1:+43439910 | MS.gene034709:CDS |
| GATGGAGCATAAAACATTCA+AGG | 0.521684 | 1.1:+43440699 | MS.gene034709:CDS |
| CAATAAGGGTTGGTAAAGAA+AGG | 0.522250 | 1.1:+43439781 | MS.gene034709:CDS |
| TACCAAAGGAGTTTATGAAA+AGG | 0.523215 | 1.1:+43440847 | MS.gene034709:CDS |
| AAGTGATGAAGTGAGTGATA+AGG | 0.524193 | 1.1:+43439037 | MS.gene034709:CDS |
| GGGATGTCATGAAAATATTG+TGG | 0.531604 | 1.1:+43440869 | MS.gene034709:CDS |
| GAGGGTTCCTAAGATTTATG+TGG | 0.536061 | 1.1:+43438704 | MS.gene034709:intron |
| TGTGGCTGCAGATTCAGTAA+AGG | 0.538766 | 1.1:+43440948 | MS.gene034709:CDS |
| ATATTCCTTAAATTCCCAAA+CGG | 0.544640 | 1.1:+43438756 | MS.gene034709:CDS |
| GCTGCAGATTCAGTAAAGGT+TGG | 0.545755 | 1.1:+43440952 | MS.gene034709:CDS |
| GTATTTGCAGGGTGTACCAA+AGG | 0.558528 | 1.1:+43440833 | MS.gene034709:intron |
| GAGTGATAAGGGTTCAGATG+AGG | 0.561033 | 1.1:+43439049 | MS.gene034709:CDS |
| GTCCAAGACTCTAAGAGACT+TGG | 0.562703 | 1.1:-43441673 | None:intergenic |
| ACTTACCAAGTAATAACCAT+TGG | 0.568490 | 1.1:-43439633 | None:intergenic |
| TACAAAAGGTCGTGATGTGA+TGG | 0.575558 | 1.1:+43440681 | MS.gene034709:intron |
| AATATCAAATCTGTTGATGA+TGG | 0.577260 | 1.1:+43438954 | MS.gene034709:CDS |
| TGCAGATTCAGTAAAGGTTG+GGG | 0.578364 | 1.1:+43440954 | MS.gene034709:CDS |
| CCAAAGGAGTTTATGAAAAG+GGG | 0.581936 | 1.1:+43440849 | MS.gene034709:CDS |
| TATGGTGAAGAATAGAGTCC+CGG | 0.582585 | 1.1:+43440723 | MS.gene034709:CDS |
| GGTTGGTAAAGAAAGGACTC+TGG | 0.588239 | 1.1:+43439788 | MS.gene034709:CDS |
| AATCTTGTATGAGTGGTGGT+TGG | 0.588690 | 1.1:+43439844 | MS.gene034709:CDS |
| GGGACTGCAACAATAAGGGT+TGG | 0.589089 | 1.1:+43439771 | MS.gene034709:CDS |
| ATGTCACATACTTACGCCAA+TGG | 0.590674 | 1.1:+43439617 | MS.gene034709:CDS |
| AGGTAGTAACAAAGTAGCCA+TGG | 0.597558 | 1.1:+43439514 | MS.gene034709:intron |
| TATGTGGAGAAATATTGGAA+AGG | 0.599905 | 1.1:+43438720 | MS.gene034709:CDS |
| ATTTATGAAAGAATGCAAAG+TGG | 0.609427 | 1.1:+43440980 | MS.gene034709:CDS |
| GTTCAATCCATAGTTGCCAA+AGG | 0.615815 | 1.1:+43441566 | MS.gene034709:intron |
| TGAAAATGGGGAGAAAGTCA+TGG | 0.631530 | 1.1:+43440895 | MS.gene034709:CDS |
| TGGAATATGTTGAAATGACA+TGG | 0.667913 | 1.1:-43438528 | None:intergenic |
| ATATTGTGGAGTTGAAAATG+GGG | 0.692849 | 1.1:+43440883 | MS.gene034709:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATTATTTCAAATTCA+CGG | - | chr1.1:43440462-43440481 | None:intergenic | 10.0% |
| !!! | AAATAATCTTTAAATTTTTC+AGG | + | chr1.1:43439494-43439513 | MS.gene034709:intron | 10.0% |
| !!! | ATAATTTATTTCTAAAGTAT+TGG | - | chr1.1:43438931-43438950 | None:intergenic | 10.0% |
| !!! | CAAATATATCTATATTTTTT+GGG | + | chr1.1:43440611-43440630 | MS.gene034709:intron | 10.0% |
| !!! | TATGATAAACAAAATAATTT+TGG | + | chr1.1:43439425-43439444 | MS.gene034709:intron | 10.0% |
| !!! | TCAAATATATCTATATTTTT+TGG | + | chr1.1:43440610-43440629 | MS.gene034709:intron | 10.0% |
| !!! | TTAGATTTTATTATTGTAAA+GGG | + | chr1.1:43440228-43440247 | MS.gene034709:intron | 10.0% |
| !!! | TTCTTTTTTAGTTTTTTATT+TGG | + | chr1.1:43440018-43440037 | MS.gene034709:intron | 10.0% |
| !!! | TTTAGATTTTATTATTGTAA+AGG | + | chr1.1:43440227-43440246 | MS.gene034709:intron | 10.0% |
| !!! | TTTATTTGTTTTTTTTTTGA+AGG | + | chr1.1:43440481-43440500 | MS.gene034709:intron | 10.0% |
| !! | AAAATATTACAAACAATCAT+AGG | - | chr1.1:43441222-43441241 | None:intergenic | 15.0% |
| !! | AAATATTACAAACAATCATA+GGG | - | chr1.1:43441221-43441240 | None:intergenic | 15.0% |
| !! | ATTTGAATAGATTTATAGTT+AGG | - | chr1.1:43440596-43440615 | None:intergenic | 15.0% |
| !! | GACATTATAATTTCAAAATA+AGG | - | chr1.1:43439602-43439621 | None:intergenic | 15.0% |
| !! | TATTATTATTTCAAATTCAC+GGG | - | chr1.1:43440461-43440480 | None:intergenic | 15.0% |
| !!! | AAACTTATGAATGATTTTTA+TGG | + | chr1.1:43440385-43440404 | MS.gene034709:intron | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | + | chr1.1:43438817-43438836 | MS.gene034709:intron | 15.0% |
| !!! | ATTACTAATTTACTAGATTT+TGG | + | chr1.1:43439188-43439207 | MS.gene034709:intron | 15.0% |
| !!! | CATAGTTTTTTTTTTTTTGA+AGG | - | chr1.1:43441445-43441464 | None:intergenic | 15.0% |
| !!! | GTATTTCAAATTTAAGATTA+AGG | - | chr1.1:43440439-43440458 | None:intergenic | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | + | chr1.1:43438818-43438837 | MS.gene034709:intron | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | + | chr1.1:43438903-43438922 | MS.gene034709:CDS | 15.0% |
| !!! | TGATTGTTTGTAATATTTTT+TGG | + | chr1.1:43441223-43441242 | MS.gene034709:intron | 15.0% |
| !! | AGGATTAATTACATCAAATA+TGG | + | chr1.1:43440747-43440766 | MS.gene034709:intron | 20.0% |
| !! | ATAGTAACATTGAATGAAAT+TGG | - | chr1.1:43439939-43439958 | None:intergenic | 20.0% |
| !! | ATTATCTGTTTGTTCTAATA+AGG | + | chr1.1:43441082-43441101 | MS.gene034709:CDS | 20.0% |
| !! | TTATTAGAACAAACAGATAA+TGG | - | chr1.1:43441083-43441102 | None:intergenic | 20.0% |
| !!! | AACACTTGAACAATTTTAAA+GGG | + | chr1.1:43439751-43439770 | MS.gene034709:CDS | 20.0% |
| !!! | AATTTTTCATTTGTATTTGC+AGG | + | chr1.1:43440821-43440840 | MS.gene034709:intron | 20.0% |
| !!! | ACTTTTTAAGAGTTATTCAA+GGG | + | chr1.1:43439272-43439291 | MS.gene034709:intron | 20.0% |
| !!! | ATTTTTCATTTGTATTTGCA+GGG | + | chr1.1:43440822-43440841 | MS.gene034709:intron | 20.0% |
| !!! | CAAGAAAATTTACTTTTGAA+TGG | - | chr1.1:43440179-43440198 | None:intergenic | 20.0% |
| !!! | TACTTTTTAAGAGTTATTCA+AGG | + | chr1.1:43439271-43439290 | MS.gene034709:intron | 20.0% |
| !!! | TCAAAAGTAAATTTTCTTGA+GGG | + | chr1.1:43440180-43440199 | MS.gene034709:intron | 20.0% |
| !!! | TGTTCAACAAGAAATATTTT+GGG | + | chr1.1:43438779-43438798 | MS.gene034709:CDS | 20.0% |
| !!! | TTCAAAAGTAAATTTTCTTG+AGG | + | chr1.1:43440179-43440198 | MS.gene034709:intron | 20.0% |
| ! | AAAGAAAGAAAGAAAAACCT+AGG | - | chr1.1:43440004-43440023 | None:intergenic | 25.0% |
| ! | AAATATTGTGGAGTTGAAAA+TGG | + | chr1.1:43440881-43440900 | MS.gene034709:CDS | 25.0% |
| ! | AAGAAAAAATCTTGTATGAG+TGG | + | chr1.1:43439837-43439856 | MS.gene034709:CDS | 25.0% |
| ! | AAGATTATCCTATGAAAATC+TGG | - | chr1.1:43438551-43438570 | None:intergenic | 25.0% |
| ! | AATATTGTGGAGTTGAAAAT+GGG | + | chr1.1:43440882-43440901 | MS.gene034709:CDS | 25.0% |
| ! | AGATTTATGTGGAGAAATAT+TGG | + | chr1.1:43438715-43438734 | MS.gene034709:CDS | 25.0% |
| ! | ATATCCATATTTCAGAAACT+TGG | - | chr1.1:43438853-43438872 | None:intergenic | 25.0% |
| ! | ATATTCCTTAAATTCCCAAA+CGG | + | chr1.1:43438756-43438775 | MS.gene034709:CDS | 25.0% |
| ! | ATCATAGGGCAAAAATTTAA+AGG | - | chr1.1:43441207-43441226 | None:intergenic | 25.0% |
| ! | ATCATCAACAGATTTGATAT+TGG | - | chr1.1:43438955-43438974 | None:intergenic | 25.0% |
| ! | ATTTATGAAAGAATGCAAAG+TGG | + | chr1.1:43440980-43440999 | MS.gene034709:CDS | 25.0% |
| ! | CTCTTAACTTTCAAATTCTT+AGG | + | chr1.1:43438873-43438892 | MS.gene034709:intron | 25.0% |
| ! | TATTTCTCCACATAAATCTT+AGG | - | chr1.1:43438714-43438733 | None:intergenic | 25.0% |
| ! | TGTTCTCTTGAAAATATACT+TGG | - | chr1.1:43439735-43439754 | None:intergenic | 25.0% |
| ! | TTAACTTTCAAATTCTTAGG+TGG | + | chr1.1:43438876-43438895 | MS.gene034709:intron | 25.0% |
| ! | TTGGGAATTTAAGGAATATA+GGG | - | chr1.1:43438755-43438774 | None:intergenic | 25.0% |
| ! | TTTGATGTAATTAATCCTAC+CGG | - | chr1.1:43440745-43440764 | None:intergenic | 25.0% |
| ! | TTTGGGAATTTAAGGAATAT+AGG | - | chr1.1:43438756-43438775 | None:intergenic | 25.0% |
| !! | AACATATTCCAGATTTTCAT+AGG | + | chr1.1:43438540-43438559 | MS.gene034709:CDS | 25.0% |
| !! | AATATCAAATCTGTTGATGA+TGG | + | chr1.1:43438954-43438973 | MS.gene034709:CDS | 25.0% |
| !! | GAACACTTGAACAATTTTAA+AGG | + | chr1.1:43439750-43439769 | MS.gene034709:CDS | 25.0% |
| !! | GCTTTAAATCAAATTCTAAC+TGG | + | chr1.1:43441302-43441321 | MS.gene034709:intron | 25.0% |
| !! | GTGTTCAACAAGAAATATTT+TGG | + | chr1.1:43438778-43438797 | MS.gene034709:CDS | 25.0% |
| !! | GTTTTTGATGTTTCAATTGA+AGG | + | chr1.1:43441050-43441069 | MS.gene034709:CDS | 25.0% |
| !! | TAAACCATTATTTGAAACAG+TGG | + | chr1.1:43439706-43439725 | MS.gene034709:intron | 25.0% |
| !! | TATTTCTTTTATCCATGACA+AGG | + | chr1.1:43440096-43440115 | MS.gene034709:intron | 25.0% |
| !! | TGAATGATTTTTATGGTTCT+TGG | + | chr1.1:43440392-43440411 | MS.gene034709:intron | 25.0% |
| !!! | AACTTTTTGATAGTTAGTGA+TGG | + | chr1.1:43440528-43440547 | MS.gene034709:intron | 25.0% |
| !!! | AAGTATTATGAGAGTATTTG+TGG | + | chr1.1:43440930-43440949 | MS.gene034709:CDS | 25.0% |
| !!! | TGAGTTTTCTCTCTTTATTT+TGG | + | chr1.1:43439160-43439179 | MS.gene034709:intron | 25.0% |
| !!! | TTGCAATTTTTTTGTCTGAA+AGG | + | chr1.1:43439299-43439318 | MS.gene034709:intron | 25.0% |
| !!! | TTTTTTTTGAAGGAACATAC+AGG | - | chr1.1:43441435-43441454 | None:intergenic | 25.0% |
| AAAAAATCTTGTATGAGTGG+TGG | + | chr1.1:43439840-43439859 | MS.gene034709:CDS | 30.0% | |
| AAAACCTAGGAATTTCTTTG+AGG | - | chr1.1:43439991-43440010 | None:intergenic | 30.0% | |
| ACCAAAGGAGTTTATGAAAA+GGG | + | chr1.1:43440848-43440867 | MS.gene034709:CDS | 30.0% | |
| ACTTACCAAGTAATAACCAT+TGG | - | chr1.1:43439636-43439655 | None:intergenic | 30.0% | |
| AGAAAAAGGAGAAATCAACA+AGG | - | chr1.1:43441501-43441520 | None:intergenic | 30.0% | |
| ATACAGGATCATAGTTATTG+AGG | - | chr1.1:43441419-43441438 | None:intergenic | 30.0% | |
| ATATTGTGGAGTTGAAAATG+GGG | + | chr1.1:43440883-43440902 | MS.gene034709:CDS | 30.0% | |
| ATCCATGACAAGGTTATAAA+GGG | + | chr1.1:43440106-43440125 | MS.gene034709:intron | 30.0% | |
| ATGAACTATATGCTACATAC+AGG | - | chr1.1:43441470-43441489 | None:intergenic | 30.0% | |
| CAAGTTCAAAGAACTAGAAA+TGG | + | chr1.1:43439086-43439105 | MS.gene034709:CDS | 30.0% | |
| GAAAAAGGAGAAATCAACAA+GGG | - | chr1.1:43441500-43441519 | None:intergenic | 30.0% | |
| GCATAAAACATTCAAGGTTA+TGG | + | chr1.1:43440705-43440724 | MS.gene034709:CDS | 30.0% | |
| GTATCCACTGTTTCAAATAA+TGG | - | chr1.1:43439713-43439732 | None:intergenic | 30.0% | |
| TACCAAAGGAGTTTATGAAA+AGG | + | chr1.1:43440847-43440866 | MS.gene034709:CDS | 30.0% | |
| TATCCATGACAAGGTTATAA+AGG | + | chr1.1:43440105-43440124 | MS.gene034709:intron | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | + | chr1.1:43438720-43438739 | MS.gene034709:CDS | 30.0% | |
| TGTGTTTATGCATGTACAAA+AGG | + | chr1.1:43440667-43440686 | MS.gene034709:intron | 30.0% | |
| TTGAATTTCTTTGTTGCAGA+GGG | + | chr1.1:43438686-43438705 | MS.gene034709:intron | 30.0% | |
| TTGATGTAATTAATCCTACC+GGG | - | chr1.1:43440744-43440763 | None:intergenic | 30.0% | |
| TTTGAATTTCTTTGTTGCAG+AGG | + | chr1.1:43438685-43438704 | MS.gene034709:intron | 30.0% | |
| ! | ACTTTCATGAACTTCTTTTG+TGG | - | chr1.1:43439021-43439040 | None:intergenic | 30.0% |
| ! | CTTAGGTGGATCATATTTTA+AGG | + | chr1.1:43438890-43438909 | MS.gene034709:intron | 30.0% |
| ! | GCAAATTTGAGATGATTCAA+AGG | + | chr1.1:43439910-43439929 | MS.gene034709:CDS | 30.0% |
| !! | TCAACAAGAAATATTTTGGG+TGG | + | chr1.1:43438782-43438801 | MS.gene034709:CDS | 30.0% |
| !! | TTTGCCAAGTTTCTGAAATA+TGG | + | chr1.1:43438846-43438865 | MS.gene034709:intron | 30.0% |
| AAAGAATGCAAAGTGGAGAT+TGG | + | chr1.1:43440987-43441006 | MS.gene034709:CDS | 35.0% | |
| AAGTGATGAAGTGAGTGATA+AGG | + | chr1.1:43439037-43439056 | MS.gene034709:CDS | 35.0% | |
| ACTACCCAACAAAAATTCTC+AGG | + | chr1.1:43439137-43439156 | MS.gene034709:CDS | 35.0% | |
| AGTGATGAAGTGAGTGATAA+GGG | + | chr1.1:43439038-43439057 | MS.gene034709:CDS | 35.0% | |
| ATCCCTTTATAACCTTGTCA+TGG | - | chr1.1:43440111-43440130 | None:intergenic | 35.0% | |
| ATTTCTTGTTGAACACCGTT+TGG | - | chr1.1:43438774-43438793 | None:intergenic | 35.0% | |
| CCAAAGGAGTTTATGAAAAG+GGG | + | chr1.1:43440849-43440868 | MS.gene034709:CDS | 35.0% | |
| CGATTAAAGCTTCAGATGTT+GGG | - | chr1.1:43439559-43439578 | None:intergenic | 35.0% | |
| CGCAACATATATTAGTGACT+TGG | - | chr1.1:43441257-43441276 | None:intergenic | 35.0% | |
| GATGGAGCATAAAACATTCA+AGG | + | chr1.1:43440699-43440718 | MS.gene034709:CDS | 35.0% | |
| GGGATGTCATGAAAATATTG+TGG | + | chr1.1:43440869-43440888 | MS.gene034709:CDS | 35.0% | |
| TAAAGGGACTGCAACAATAA+GGG | + | chr1.1:43439767-43439786 | MS.gene034709:CDS | 35.0% | |
| TCAACCTCAAAGAAATTCCT+AGG | + | chr1.1:43439984-43440003 | MS.gene034709:CDS | 35.0% | |
| TCGATTAAAGCTTCAGATGT+TGG | - | chr1.1:43439560-43439579 | None:intergenic | 35.0% | |
| TGGAGAGTAATGGTGATATT+TGG | + | chr1.1:43438802-43438821 | MS.gene034709:intron | 35.0% | |
| TGGCAAAAGAAAAGTGAGTA+TGG | + | chr1.1:43439106-43439125 | MS.gene034709:CDS | 35.0% | |
| TTAAAGGGACTGCAACAATA+AGG | + | chr1.1:43439766-43439785 | MS.gene034709:CDS | 35.0% | |
| TTACGAGTGGTTAATGATAC+TGG | + | chr1.1:43441524-43441543 | MS.gene034709:intron | 35.0% | |
| TTACGCCAATGGTTATTACT+TGG | + | chr1.1:43439628-43439647 | MS.gene034709:CDS | 35.0% | |
| TTTCTTGTTGAACACCGTTT+GGG | - | chr1.1:43438773-43438792 | None:intergenic | 35.0% | |
| ! | AAAGAAGCCTTATGTCTTAC+GGG | + | chr1.1:43441618-43441637 | MS.gene034709:CDS | 35.0% |
| ! | ACTCACCTGAGAATTTTTGT+TGG | - | chr1.1:43439145-43439164 | None:intergenic | 35.0% |
| ! | ACTTTCTTGACCTCTTTTTG+TGG | - | chr1.1:43438988-43439007 | None:intergenic | 35.0% |
| ! | CAAAGAAGCCTTATGTCTTA+CGG | + | chr1.1:43441617-43441636 | MS.gene034709:CDS | 35.0% |
| ! | CTATGGATTGAACAGAAGAA+AGG | - | chr1.1:43441559-43441578 | None:intergenic | 35.0% |
| ! | CTCACCTGAGAATTTTTGTT+GGG | - | chr1.1:43439144-43439163 | None:intergenic | 35.0% |
| ! | TGAGAATTTTTGTTGGGTAG+TGG | - | chr1.1:43439138-43439157 | None:intergenic | 35.0% |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | + | chr1.1:43438792-43438811 | MS.gene034709:intron | 35.0% |
| !! | CAATAAGGGTTGGTAAAGAA+AGG | + | chr1.1:43439781-43439800 | MS.gene034709:CDS | 35.0% |
| AAGACATTGCAGGAACTTCT+AGG | + | chr1.1:43440151-43440170 | MS.gene034709:intron | 40.0% | |
| AATCTTGTATGAGTGGTGGT+TGG | + | chr1.1:43439844-43439863 | MS.gene034709:CDS | 40.0% | |
| ACCACTCGTAAGAGAGAAAA+AGG | - | chr1.1:43441515-43441534 | None:intergenic | 40.0% | |
| AGGTAGTAACAAAGTAGCCA+TGG | + | chr1.1:43439514-43439533 | MS.gene034709:intron | 40.0% | |
| ATGTCACATACTTACGCCAA+TGG | + | chr1.1:43439617-43439636 | MS.gene034709:CDS | 40.0% | |
| CGTAAGACATAAGGCTTCTT+TGG | - | chr1.1:43441619-43441638 | None:intergenic | 40.0% | |
| CTGCAGATTCAGTAAAGGTT+GGG | + | chr1.1:43440953-43440972 | MS.gene034709:CDS | 40.0% | |
| GAACACCGTTTGGGAATTTA+AGG | - | chr1.1:43438764-43438783 | None:intergenic | 40.0% | |
| GAGGGTTCCTAAGATTTATG+TGG | + | chr1.1:43438704-43438723 | MS.gene034709:intron | 40.0% | |
| GATCTCTTGTGGTGTAAAGA+AGG | + | chr1.1:43440128-43440147 | MS.gene034709:intron | 40.0% | |
| GGTTATAAAGGGATCTCTTG+TGG | + | chr1.1:43440117-43440136 | MS.gene034709:intron | 40.0% | |
| GTAAAGAAGGAAGACATTGC+AGG | + | chr1.1:43440141-43440160 | MS.gene034709:intron | 40.0% | |
| GTTCAATCCATAGTTGCCAA+AGG | + | chr1.1:43441566-43441585 | MS.gene034709:intron | 40.0% | |
| TACAAAAGGTCGTGATGTGA+TGG | + | chr1.1:43440681-43440700 | MS.gene034709:intron | 40.0% | |
| TATGGTGAAGAATAGAGTCC+CGG | + | chr1.1:43440723-43440742 | MS.gene034709:CDS | 40.0% | |
| TGAAAATGGGGAGAAAGTCA+TGG | + | chr1.1:43440895-43440914 | MS.gene034709:CDS | 40.0% | |
| TGCAGATTCAGTAAAGGTTG+GGG | + | chr1.1:43440954-43440973 | MS.gene034709:CDS | 40.0% | |
| ! | CCCCTTTTCATAAACTCCTT+TGG | - | chr1.1:43440852-43440871 | None:intergenic | 40.0% |
| ! | TCCTTTTTCTCTCTTACGAG+TGG | + | chr1.1:43441511-43441530 | MS.gene034709:intron | 40.0% |
| !! | CTTTGAGGTTGATTCGTTTC+TGG | - | chr1.1:43439976-43439995 | None:intergenic | 40.0% |
| !! | TTTTCTAGCCTTCTTCACCA+TGG | - | chr1.1:43439534-43439553 | None:intergenic | 40.0% |
| CAAAGTAGCCATGGTGAAGA+AGG | + | chr1.1:43439523-43439542 | MS.gene034709:CDS | 45.0% | |
| CACCAAACCCGTAAGACATA+AGG | - | chr1.1:43441628-43441647 | None:intergenic | 45.0% | |
| GAGTGATAAGGGTTCAGATG+AGG | + | chr1.1:43439049-43439068 | MS.gene034709:CDS | 45.0% | |
| GCTGCAGATTCAGTAAAGGT+TGG | + | chr1.1:43440952-43440971 | MS.gene034709:CDS | 45.0% | |
| GTATTTGCAGGGTGTACCAA+AGG | + | chr1.1:43440833-43440852 | MS.gene034709:intron | 45.0% | |
| GTCCAAGTCTCTTAGAGTCT+TGG | + | chr1.1:43441671-43441690 | MS.gene034709:CDS | 45.0% | |
| GTTGCCAAAGGCTGAGTATA+TGG | + | chr1.1:43441578-43441597 | MS.gene034709:intron | 45.0% | |
| GTTGCCATATACTCAGCCTT+TGG | - | chr1.1:43441585-43441604 | None:intergenic | 45.0% | |
| TACTCAGCCTTTGGCAACTA+TGG | - | chr1.1:43441576-43441595 | None:intergenic | 45.0% | |
| TGTGGCTGCAGATTCAGTAA+AGG | + | chr1.1:43440948-43440967 | MS.gene034709:CDS | 45.0% | |
| ! | AGCCTTATGTCTTACGGGTT+TGG | + | chr1.1:43441623-43441642 | MS.gene034709:CDS | 45.0% |
| ! | GTCCAAGACTCTAAGAGACT+TGG | - | chr1.1:43441676-43441695 | None:intergenic | 45.0% |
| !! | GGTTGGTAAAGAAAGGACTC+TGG | + | chr1.1:43439788-43439807 | MS.gene034709:CDS | 45.0% |
| !!! | ACGGGTTTGGTGAGAGTTTT+GGG | + | chr1.1:43441636-43441655 | MS.gene034709:CDS | 45.0% |
| !!! | TACGGGTTTGGTGAGAGTTT+TGG | + | chr1.1:43441635-43441654 | MS.gene034709:CDS | 45.0% |
| !! | ATATATATATATATTGAATT+TGG | + | chr1.1:43440357-43440376 | MS.gene034709:intron | 5.0% |
| !!! | AAAAAAAATCTAATTTTTAT+AGG | - | chr1.1:43439382-43439401 | None:intergenic | 5.0% |
| !!! | TAAAAATTAGATTTTTTTTA+AGG | + | chr1.1:43439383-43439402 | MS.gene034709:intron | 5.0% |
| GGGACTGCAACAATAAGGGT+TGG | + | chr1.1:43439771-43439790 | MS.gene034709:CDS | 50.0% | |
| GTGAAGAATAGAGTCCCGGT+AGG | + | chr1.1:43440727-43440746 | MS.gene034709:intron | 50.0% | |
| ! | GGACTCTGGAAGTGAGTTTG+AGG | + | chr1.1:43439802-43439821 | MS.gene034709:CDS | 50.0% |
| ! | GGTGCTGAAGCCACAAAAAG+AGG | + | chr1.1:43438975-43438994 | MS.gene034709:CDS | 50.0% |
| !!! | GGTTTGGTGAGAGTTTTGGG+TGG | + | chr1.1:43441639-43441658 | MS.gene034709:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 43438530 | 43441701 | 43438530 | ID=MS.gene034709 |
| chr1.1 | mRNA | 43438530 | 43441701 | 43438530 | ID=MS.gene034709.t1;Parent=MS.gene034709 |
| chr1.1 | exon | 43438530 | 43438586 | 43438530 | ID=MS.gene034709.t1.exon1;Parent=MS.gene034709.t1 |
| chr1.1 | CDS | 43438530 | 43438586 | 43438530 | ID=cds.MS.gene034709.t1;Parent=MS.gene034709.t1 |
| chr1.1 | exon | 43438705 | 43438807 | 43438705 | ID=MS.gene034709.t1.exon2;Parent=MS.gene034709.t1 |
| chr1.1 | CDS | 43438705 | 43438807 | 43438705 | ID=cds.MS.gene034709.t1;Parent=MS.gene034709.t1 |
| chr1.1 | exon | 43438895 | 43439158 | 43438895 | ID=MS.gene034709.t1.exon3;Parent=MS.gene034709.t1 |
| chr1.1 | CDS | 43438895 | 43439158 | 43438895 | ID=cds.MS.gene034709.t1;Parent=MS.gene034709.t1 |
| chr1.1 | exon | 43439516 | 43439649 | 43439516 | ID=MS.gene034709.t1.exon4;Parent=MS.gene034709.t1 |
| chr1.1 | CDS | 43439516 | 43439649 | 43439516 | ID=cds.MS.gene034709.t1;Parent=MS.gene034709.t1 |
| chr1.1 | exon | 43439726 | 43440005 | 43439726 | ID=MS.gene034709.t1.exon5;Parent=MS.gene034709.t1 |
| chr1.1 | CDS | 43439726 | 43440005 | 43439726 | ID=cds.MS.gene034709.t1;Parent=MS.gene034709.t1 |
| chr1.1 | exon | 43440689 | 43440744 | 43440689 | ID=MS.gene034709.t1.exon6;Parent=MS.gene034709.t1 |
| chr1.1 | CDS | 43440689 | 43440744 | 43440689 | ID=cds.MS.gene034709.t1;Parent=MS.gene034709.t1 |
| chr1.1 | exon | 43440843 | 43441103 | 43440843 | ID=MS.gene034709.t1.exon7;Parent=MS.gene034709.t1 |
| chr1.1 | CDS | 43440843 | 43441103 | 43440843 | ID=cds.MS.gene034709.t1;Parent=MS.gene034709.t1 |
| chr1.1 | exon | 43441414 | 43441434 | 43441414 | ID=MS.gene034709.t1.exon8;Parent=MS.gene034709.t1 |
| chr1.1 | CDS | 43441414 | 43441434 | 43441414 | ID=cds.MS.gene034709.t1;Parent=MS.gene034709.t1 |
| chr1.1 | exon | 43441579 | 43441701 | 43441579 | ID=MS.gene034709.t1.exon9;Parent=MS.gene034709.t1 |
| chr1.1 | CDS | 43441579 | 43441701 | 43441579 | ID=cds.MS.gene034709.t1;Parent=MS.gene034709.t1 |
| Gene Sequence |
| Protein sequence |
