AlfalfaGEDB | MS.gene034709

M. sativa cultivar XinJiangDaYe / MS.gene034709

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene034709.t1	KEH40804.1	72.1	416	70	6	1	383	1	403	6.80E-151	543.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene034709.t1	Q2R9D2	29.5	129	81	4	142	262	263	389	3.9e-06	54.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene034709.t1	A0A072VFJ7	72.1	416	70	6	1	383	1	403	4.9e-151	543.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene034709.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene026341	MS.gene034709	PPI
MS.gene026344	MS.gene034709	PPI
MS.gene026345	MS.gene034709	PPI
MS.gene034709	MS.gene073650	PPI
MS.gene034709	MS.gene052843	PPI
MS.gene034709	MS.gene31896	PPI
MS.gene034709	MS.gene067200	PPI
MS.gene034709	MS.gene99290	PPI
MS.gene034709	MS.gene052828	PPI
MS.gene034709	MS.gene026345	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene034709.t1	MTR_1g035570	71.635	416	72	6	1	383	1	403	0.0	572
MS.gene034709.t1	MTR_1g035490	66.366	333	75	8	70	376	9	330	4.09e-137	396
MS.gene034709.t1	MTR_1g035640	52.365	296	97	2	1	267	1	281	5.12e-95	293
MS.gene034709.t1	MTR_1g035640	39.062	128	50	2	248	375	366	465	1.80e-16	81.6
MS.gene034709.t1	MTR_1g035620	42.759	435	162	16	1	374	1	409	1.77e-90	280
MS.gene034709.t1	MTR_1g050845	40.898	401	140	13	1	341	1	364	5.23e-71	239
MS.gene034709.t1	MTR_6g061070	32.889	450	205	14	14	373	27	469	2.26e-54	188
MS.gene034709.t1	MTR_1g035650	38.117	223	81	6	1	186	1	203	2.06e-34	127
MS.gene034709.t1	MTR_1g108780	24.359	468	217	14	20	373	12	456	4.05e-24	104
MS.gene034709.t1	MTR_5g044670	26.000	300	176	8	14	278	25	313	4.04e-22	97.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 76 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTAGGAATTTCTTTG+AGG	0.431350	1.1:-43439988	None:intergenic
AAAGAAGCCTTATGTCTTAC+GGG	0.369158	1.1:+43441618	MS.gene034709:CDS
AAAGAATGCAAAGTGGAGAT+TGG	0.426567	1.1:+43440987	MS.gene034709:CDS
AAATATTGTGGAGTTGAAAA+TGG	0.256652	1.1:+43440881	MS.gene034709:CDS
AAGATTATCCTATGAAAATC+TGG	0.419859	1.1:-43438548	None:intergenic
AAGTATTATGAGAGTATTTG+TGG	0.445350	1.1:+43440930	MS.gene034709:CDS
AAGTGATGAAGTGAGTGATA+AGG	0.524193	1.1:+43439037	MS.gene034709:CDS
AATATCAAATCTGTTGATGA+TGG	0.577260	1.1:+43438954	MS.gene034709:CDS
AATATTGTGGAGTTGAAAAT+GGG	0.451536	1.1:+43440882	MS.gene034709:CDS
AATCTTGTATGAGTGGTGGT+TGG	0.588690	1.1:+43439844	MS.gene034709:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAATCTTGTATGAGTGG+TGG	+	chr1.1:43439840-43439859	MS.gene034709:CDS	30.0%
AAAACCTAGGAATTTCTTTG+AGG	-	chr1.1:43439991-43440010	None:intergenic	30.0%
ACCAAAGGAGTTTATGAAAA+GGG	+	chr1.1:43440848-43440867	MS.gene034709:CDS	30.0%
ACTTACCAAGTAATAACCAT+TGG	-	chr1.1:43439636-43439655	None:intergenic	30.0%
AGAAAAAGGAGAAATCAACA+AGG	-	chr1.1:43441501-43441520	None:intergenic	30.0%
ATACAGGATCATAGTTATTG+AGG	-	chr1.1:43441419-43441438	None:intergenic	30.0%
ATATTGTGGAGTTGAAAATG+GGG	+	chr1.1:43440883-43440902	MS.gene034709:CDS	30.0%
ATCCATGACAAGGTTATAAA+GGG	+	chr1.1:43440106-43440125	MS.gene034709:intron	30.0%
ATGAACTATATGCTACATAC+AGG	-	chr1.1:43441470-43441489	None:intergenic	30.0%
CAAGTTCAAAGAACTAGAAA+TGG	+	chr1.1:43439086-43439105	MS.gene034709:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	43438530	43441701	43438530	ID=MS.gene034709
chr1.1	mRNA	43438530	43441701	43438530	ID=MS.gene034709.t1;Parent=MS.gene034709
chr1.1	exon	43438530	43438586	43438530	ID=MS.gene034709.t1.exon1;Parent=MS.gene034709.t1
chr1.1	CDS	43438530	43438586	43438530	ID=cds.MS.gene034709.t1;Parent=MS.gene034709.t1
chr1.1	exon	43438705	43438807	43438705	ID=MS.gene034709.t1.exon2;Parent=MS.gene034709.t1
chr1.1	CDS	43438705	43438807	43438705	ID=cds.MS.gene034709.t1;Parent=MS.gene034709.t1
chr1.1	exon	43438895	43439158	43438895	ID=MS.gene034709.t1.exon3;Parent=MS.gene034709.t1
chr1.1	CDS	43438895	43439158	43438895	ID=cds.MS.gene034709.t1;Parent=MS.gene034709.t1
chr1.1	exon	43439516	43439649	43439516	ID=MS.gene034709.t1.exon4;Parent=MS.gene034709.t1
chr1.1	CDS	43439516	43439649	43439516	ID=cds.MS.gene034709.t1;Parent=MS.gene034709.t1
chr1.1	exon	43439726	43440005	43439726	ID=MS.gene034709.t1.exon5;Parent=MS.gene034709.t1
chr1.1	CDS	43439726	43440005	43439726	ID=cds.MS.gene034709.t1;Parent=MS.gene034709.t1
chr1.1	exon	43440689	43440744	43440689	ID=MS.gene034709.t1.exon6;Parent=MS.gene034709.t1
chr1.1	CDS	43440689	43440744	43440689	ID=cds.MS.gene034709.t1;Parent=MS.gene034709.t1
chr1.1	exon	43440843	43441103	43440843	ID=MS.gene034709.t1.exon7;Parent=MS.gene034709.t1
chr1.1	CDS	43440843	43441103	43440843	ID=cds.MS.gene034709.t1;Parent=MS.gene034709.t1
chr1.1	exon	43441414	43441434	43441414	ID=MS.gene034709.t1.exon8;Parent=MS.gene034709.t1
chr1.1	CDS	43441414	43441434	43441414	ID=cds.MS.gene034709.t1;Parent=MS.gene034709.t1
chr1.1	exon	43441579	43441701	43441579	ID=MS.gene034709.t1.exon9;Parent=MS.gene034709.t1
chr1.1	CDS	43441579	43441701	43441579	ID=cds.MS.gene034709.t1;Parent=MS.gene034709.t1

Gene Sequence

>MS.gene034709

ATGTCATTTCAACATATTCCAGATTTTCATAGGATAATCTTGCAAGATAAGAAACTTGTAAGCATGTTAGAAAGAATTATTTTGCATATTTACATTATGTTTCATTTATAATGTATTATCATGTATTATTGTTTTAAAAATGTTAATGTATAATTTTTGAATTTCTTTGTTGCAGAGGGTTCCTAAGATTTATGTGGAGAAATATTGGAAAGGAATATCAAACCCTATATTCCTTAAATTCCCAAACGGTGTTCAACAAGAAATATTTTGGGTGGAGAGTAATGGTGATATTTGGTTTCAAAAAAATTGGGAAAGTTTTGCCAAGTTTCTGAAATATGGATATCTCTTAACTTTCAAATTCTTAGGTGGATCATATTTTAAGGTTAAGATATTTGGTGCCAATACTTTAGAAATAAATTATTCCAATATCAAATCTGTTGATGATGGTGCTGAAGCCACAAAAAGAGGTCAAGAAAGTGATGATCAAGCCACAAAAGAAGTTCATGAAAGTGATGAAGTGAGTGATAAGGGTTCAGATGAGGTTGAAATTCTAAAGCAAGTTCAAAGAACTAGAAATGGCAAAAGAAAAGTGAGTATGGATTTTGCCACTACCCAACAAAAATTCTCAGGTGAGTTTTCTCTCTTTATTTTGGTAGAAATTACTAATTTACTAGATTTTGGCTTATCTGTTGCTATATTTTTTGAAAATAAATCACTTGTTTTTATAGAAATATTTACTTTTACTTTTTAAGAGTTATTCAAGGGTTTGTTGCAATTTTTTTGTCTGAAAGGTTGAAAATCTAAGAAGAAAAAAAGTGTCTTGAGAAGCAGTTTTAGTTAGATGCTTTTCCTATAAAAATTAGATTTTTTTTAAGGAAAAATATGTGATTTTTATTATGATAAACAAAATAATTTTGGTTTTCTTAAAATCTTTTAAAAATAATCTCTAAAATCAAATGTAGAAAAATAATCTTTAAATTTTTCAGGTAGTAACAAAGTAGCCATGGTGAAGAAGGCTAGAAAATACCCAACATCTGAAGCTTTAATCGAGAGAGCTAATAATGAAAATCCTTATTTTGAAATTATAATGTCACATACTTACGCCAATGGTTATTACTTGGTAAGTTTGCTATACAAAGTATATCTATTAATTTTAGCTTTAGTTAATGTCTCTAATAAACCATTATTTGAAACAGTGGATACCAAGTATATTTTCAAGAGAACACTTGAACAATTTTAAAGGGACTGCAACAATAAGGGTTGGTAAAGAAAGGACTCTGGAAGTGAGTTTGAGGTATTATGATAGCAAGAAAAAATCTTGTATGAGTGGTGGTTGGAAATTATTCAACAGAAAATATAATTTGCAAGTTGATGATGTTTGCAAATTTGAGATGATTCAAAGGAAACCAATTTCATTCAATGTTACTATTACTCGTGCTCGTGCCAGAAACGAATCAACCTCAAAGAAATTCCTAGGTTTTTCTTTCTTTCTTTTTTAGTTTTTTATTTGGATTTTTCTATGTTATAATTTTTTTATTTGATATTTGATTAATATCTATTTTTCTCTATTTCTTTTATCCATGACAAGGTTATAAAGGGATCTCTTGTGGTGTAAAGAAGGAAGACATTGCAGGAACTTCTAGGAGCCATTCAAAAGTAAATTTTCTTGAGGGTATTCTTCTAACTTATTTAAAGTTTTTAGATTTTATTATTGTAAAGGGTTCTGAAATAGTTGTAATTTTTAAATAGTTCTTTGAACTATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTGAATTTGGTCTTCAAACTTATGAATGATTTTTATGGTTCTTGGACTAAGTTTTTAATTGTATATCCTTAATCTTAAATTTGAAATACCCGTGAATTTGAAATAATAATATTTATTTGTTTTTTTTTTGAAGGAAATAATATTTATTTATGTTGTTGAACTTTTTGATAGTTAGTGATGGACGTAACTCATTCAGTATTCAGTTTCTTCATTTAGTTTAGAACCTAACTATAAATCTATTCAAATATATCTATATTTTTTGGGTGTTAAAAAAAATTATATTTGATACTATCATTTTGTGTTTATGCATGTACAAAAGGTCGTGATGTGATGGAGCATAAAACATTCAAGGTTATGGTGAAGAATAGAGTCCCGGTAGGATTAATTACATCAAATATGGTTACATATATAGATATCGATAGAGATGTTCGAAATACATAATAAATAAATAAATTTTTCATTTGTATTTGCAGGGTGTACCAAAGGAGTTTATGAAAAGGGGATGTCATGAAAATATTGTGGAGTTGAAAATGGGGAGAAAGTCATGGTTCGTAAAAGTCAAGTATTATGAGAGTATTTGTGGCTGCAGATTCAGTAAAGGTTGGGGAAAATTTATGAAAGAATGCAAAGTGGAGATTGGAGATACTTGTCTCTTTAAGTTAATTGATGAGAGAAAATTTGTTTTTGATGTTTCAATTGAAGGAAAAAAACCATTATCTGTTTGTTCTAATAAGGTACTAATAATTAACTAGATGTTTAGCTGAACATTTAAGCATTGTATTGTGTTATTGTAAACATTTGTATTTCATTTGAATCTAAGTTGTATCGTGTCTGCCTTTAAATTTTTGCCCTATGATTGTTTGTAATATTTTTTGGTTGTTATGCCAAGTCACTAATATATGTTGCGCATGCAAATTAGAGAATGTTTTTTTGCTTTAAATCAAATTCTAACTGGACTGAGTATGTTATAATACTACTATTGTGATGTGTCGTTCGACTTAAAAATATTCAATTTTCGCACATATAATTTTTTCTTAATGATAGAACCTCAATAACTATGATCCTGTATGTTCCTTCAAAAAAAAAAAAACTATGATCCTGTATGTAGCATATAGTTCATGATATATCCCTTGTTGATTTCTCCTTTTTCTCTCTTACGAGTGGTTAATGATACTGGTTACTATTTCCTTTCTTCTGTTCAATCCATAGTTGCCAAAGGCTGAGTATATGGCAACAGTTGAAGCTGCCAAAGAAGCCTTATGTCTTACGGGTTTGGTGAGAGTTTTGGGTGGAGATGTGTTGTCCAAGTCTCTTAGAGTCTTGGACGTTTAG

Protein sequence

>MS.gene034709.t1

MSFQHIPDFHRIILQDKKLRVPKIYVEKYWKGISNPIFLKFPNGVQQEIFWVESGSYFKVKIFGANTLEINYSNIKSVDDGAEATKRGQESDDQATKEVHESDEVSDKGSDEVEILKQVQRTRNGKRKVSMDFATTQQKFSGSNKVAMVKKARKYPTSEALIERANNENPYFEIIMSHTYANGYYLWIPSIFSREHLNNFKGTATIRVGKERTLEVSLRYYDSKKKSCMSGGWKLFNRKYNLQVDDVCKFEMIQRKPISFNVTITRARARNESTSKKFLGRDVMEHKTFKVMVKNRVPGVPKEFMKRGCHENIVELKMGRKSWFVKVKYYESICGCRFSKGWGKFMKECKVEIGDTCLFKLIDERKFVFDVSIEGKKPLSVCSNKNLNNYDPLPKAEYMATVEAAKEALCLTGLVRVLGGDVLSKSLRVLDV