AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068149

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068149.t1 MTR_1g035570 70.028 357 52 5 20 369 89 397 2.26e-159 453
MS.gene068149.t1 MTR_1g035490 72.404 337 73 4 35 370 15 332 5.07e-158 447
MS.gene068149.t1 MTR_1g035640 37.688 398 177 10 20 367 89 465 5.20e-66 216
MS.gene068149.t1 MTR_1g035620 40.113 354 166 11 20 365 93 408 7.20e-65 212
MS.gene068149.t1 MTR_1g050845 38.199 322 141 10 20 333 93 364 1.26e-46 170
MS.gene068149.t1 MTR_6g061070 34.264 394 203 14 8 366 98 470 1.45e-45 162
MS.gene068149.t1 MTR_8g103940 28.571 294 174 11 96 365 212 493 1.85e-24 104
MS.gene068149.t1 MTR_1g108780 26.207 290 170 9 106 365 181 456 4.82e-18 85.5
MS.gene068149.t1 MTR_1g035650 38.235 136 50 3 20 146 93 203 1.96e-15 74.7
MS.gene068149.t1 MTR_1g035520 37.607 117 69 3 254 366 267 383 1.15e-14 75.1
MS.gene068149.t1 MTR_5g044670 28.837 215 140 6 20 230 102 307 1.89e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 63 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATATTGTGGAATTGAAAA+TGG 0.233869 1.4:-37201268 MS.gene068149:CDS
GTGTTTAATGTTTCAATTGT+AGG 0.249847 1.4:-37201099 MS.gene068149:CDS
CTTTGCGAATGGTTCGTTTC+CGG 0.252300 1.4:+37201810 None:intergenic
GCATAAAACATTCAAGGTTT+TGG 0.259758 1.4:-37201438 MS.gene068149:CDS
TTAATGGAACTGCAACAATA+AGG 0.277244 1.4:-37202011 MS.gene068149:CDS
TTACACCAATGGCTATTTCT+TGG 0.306445 1.4:-37202150 MS.gene068149:intron
CATTAACAGCTTCAGATGTT+AGG 0.318603 1.4:+37202207 None:intergenic
ATAGTAACATTGAATGAAAT+TGG 0.319993 1.4:+37201841 None:intergenic
TCCTCTCATCAATCAACTTA+AGG 0.325864 1.4:+37201127 None:intergenic
ACATTGGAGGAACGTCTTCT+AGG 0.346380 1.4:-37201622 MS.gene068149:CDS
TGGCAAGAGAAAAGCGAGTA+TGG 0.354661 1.4:-37202641 MS.gene068149:CDS
TAATGGAACTGCAACAATAA+GGG 0.376410 1.4:-37202010 MS.gene068149:CDS
CCATTCGCAAAGAAATTACT+AGG 0.386228 1.4:-37201799 MS.gene068149:intron
TGGTAAGAGTGTTGCAAAGA+AGG 0.395122 1.4:-37201648 MS.gene068149:CDS
ATAATTTATTTCTAAAGTAT+TGG 0.403635 1.4:+37202834 None:intergenic
AATATTGTGGAATTGAAAAT+GGG 0.408122 1.4:-37201267 MS.gene068149:CDS
AATTATTATCAGAGTCTTTG+TGG 0.412362 1.4:-37201219 MS.gene068149:CDS
AAAGAAGGCAAAGTGGAGAT+TGG 0.415515 1.4:-37201162 MS.gene068149:CDS
AAGATTATCCTATGAAAATC+TGG 0.419859 1.4:+37203221 None:intergenic
GTGGTGGATGGAAAATATTC+AGG 0.420444 1.4:-37201921 MS.gene068149:CDS
GGTAAAGAAAGTGATGAATC+AGG 0.421286 1.4:-37202763 MS.gene068149:CDS
TGGAGAAAATTTATGAAAGA+AGG 0.431214 1.4:-37201177 MS.gene068149:CDS
GATGAAGCATAAAACATTCA+AGG 0.432143 1.4:-37201444 MS.gene068149:CDS
AAATGCCAAAGCAAGCTAAA+AGG 0.432567 1.4:-37202672 MS.gene068149:CDS
CAAGCTAAAAGGACAAGAAA+TGG 0.436835 1.4:-37202661 MS.gene068149:CDS
CAAAGTAGCAATGGTGAAGA+AGG 0.457353 1.4:-37202240 MS.gene068149:CDS
GATGACAAGGTTATAAGAAA+GGG 0.472513 1.4:-37201679 MS.gene068149:intron
TGTCATTATAACTTCAAAAG+AGG 0.475259 1.4:+37202178 None:intergenic
CGATGACAAGGTTATAAGAA+AGG 0.476820 1.4:-37201680 MS.gene068149:intron
GAGGTGAGTTTGAGATATTA+TGG 0.477793 1.4:-37201967 MS.gene068149:CDS
CCTAGTAATTTCTTTGCGAA+TGG 0.482285 1.4:+37201799 None:intergenic
CTCTTCATGACTTTCTTCTG+TGG 0.498976 1.4:+37202732 None:intergenic
CCGAAGGAGTTTATGAAAAG+AGG 0.504433 1.4:-37201300 MS.gene068149:CDS
GTCATTATAACTTCAAAAGA+GGG 0.507540 1.4:+37202179 None:intergenic
AATATCAAATCTGTTGATGA+AGG 0.508408 1.4:-37202808 MS.gene068149:CDS
AATGTTACTATTACTCGTGC+CGG 0.509303 1.4:-37201829 MS.gene068149:CDS
ACCACCCAACCAAAATTCTC+AGG 0.510316 1.4:-37202610 MS.gene068149:intron
TTTGGTGAAGAACACAGAAC+CGG 0.529435 1.4:-37201420 MS.gene068149:intron
AGGATGTCATGAAAATATTG+TGG 0.531604 1.4:-37201280 MS.gene068149:CDS
TGTGGCTGCAGATTCAGTAA+AGG 0.542328 1.4:-37201201 MS.gene068149:CDS
AGCTGAAGACACAGAAGAAG+AGG 0.546039 1.4:-37202785 MS.gene068149:CDS
CAATAAGGGTTGGTAATGAA+AGG 0.551596 1.4:-37201996 MS.gene068149:CDS
TGTTCTCTTGAAAACTCACT+TGG 0.555107 1.4:+37202045 None:intergenic
GTAAATTTGAGATGATTCGA+CGG 0.557247 1.4:-37201867 MS.gene068149:CDS
GTATTTGCAGTGTGTACCGA+AGG 0.559027 1.4:-37201316 MS.gene068149:intron
AATGTGGTATGGGTGGTGGA+TGG 0.565938 1.4:-37201933 MS.gene068149:CDS
GCTGCAGATTCAGTAAAGGT+TGG 0.573667 1.4:-37201197 MS.gene068149:CDS
GGAACTGCAACAATAAGGGT+TGG 0.581562 1.4:-37202006 MS.gene068149:CDS
TGATGACAGTTCAGATGAGG+TGG 0.583984 1.4:-37202695 MS.gene068149:CDS
ACTTACCAAGAAATAGCCAT+TGG 0.587587 1.4:+37202145 None:intergenic
ATTTATGAAAGAAGGCAAAG+TGG 0.595070 1.4:-37201169 MS.gene068149:CDS
TCCTTAAGTTGATTGATGAG+AGG 0.601248 1.4:-37201128 MS.gene068149:CDS
AGGTAGTAACAAAGTAGCAA+TGG 0.603454 1.4:-37202249 MS.gene068149:CDS
ATGACACAATCTTACACCAA+TGG 0.609025 1.4:-37202161 MS.gene068149:CDS
TGAAAATGGGGAGAAAGTCA+TGG 0.612079 1.4:-37201254 MS.gene068149:CDS
GGTTGGTAATGAAAGGAGTG+TGG 0.615653 1.4:-37201989 MS.gene068149:CDS
GTTGCAAAGAAGGAAGACAT+TGG 0.622416 1.4:-37201638 MS.gene068149:CDS
GCAAAGAAGGAAGACATTGG+AGG 0.630671 1.4:-37201635 MS.gene068149:CDS
ATATTGTGGAATTGAAAATG+GGG 0.634099 1.4:-37201266 MS.gene068149:CDS
ATGACAAGGTTATAAGAAAG+GGG 0.638628 1.4:-37201678 MS.gene068149:intron
GCTGAAGACACAGAAGAAGA+GGG 0.643743 1.4:-37202784 MS.gene068149:CDS
AAGTGATGACAGTTCAGATG+AGG 0.649994 1.4:-37202698 MS.gene068149:CDS
TGGTAATGAAAGGAGTGTGG+AGG 0.650568 1.4:-37201986 MS.gene068149:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTATTTCTAAAGTAT+TGG + chr1.4:37201494-37201513 None:intergenic 10.0%
!!! AAAATATGCGATTTTTTTTT+TGG - chr1.4:37201929-37201948 MS.gene068149:CDS 15.0%
!!! ATATTGGTTTCAAAAAAATT+GGG - chr1.4:37201381-37201400 MS.gene068149:intron 15.0%
!!! TGTTGAACAAAAAATATTTT+GGG - chr1.4:37201343-37201362 MS.gene068149:intron 15.0%
!!! TTTTATTTAATTAATCCTAC+CGG + chr1.4:37202927-37202946 None:intergenic 15.0%
!! AAATATTGTGGAATTGAAAA+TGG - chr1.4:37203057-37203076 MS.gene068149:intron 20.0%
!! AACAATGATACATAAACAAT+AGG + chr1.4:37201207-37201226 None:intergenic 20.0%
!! AATATTGTGGAATTGAAAAT+GGG - chr1.4:37203058-37203077 MS.gene068149:intron 20.0%
!! ACAATGATACATAAACAATA+GGG + chr1.4:37201206-37201225 None:intergenic 20.0%
!! ATAGTAACATTGAATGAAAT+TGG + chr1.4:37202487-37202506 None:intergenic 20.0%
!! ATATTCCTTAAATTTCCAAA+CGG - chr1.4:37201320-37201339 MS.gene068149:intron 20.0%
!! TTAACTTTCAAATTCATTAG+TGG - chr1.4:37201439-37201458 MS.gene068149:CDS 20.0%
!! TTGGAAATTTAAGGAATATA+GGG + chr1.4:37201319-37201338 None:intergenic 20.0%
!! TTTGGAAATTTAAGGAATAT+AGG + chr1.4:37201320-37201339 None:intergenic 20.0%
!!! GATATTGGTTTCAAAAAAAT+TGG - chr1.4:37201380-37201399 MS.gene068149:intron 20.0%
!!! GTGTTGAACAAAAAATATTT+TGG - chr1.4:37201342-37201361 MS.gene068149:intron 20.0%
!!! TATTTTAAGGTGAAGATATT+TGG - chr1.4:37201466-37201485 MS.gene068149:intron 20.0%
! AAATAGTTAATGCCTAAACT+TGG - chr1.4:37202052-37202071 MS.gene068149:CDS 25.0%
! AAGAGATATCCATATTTGAA+AGG + chr1.4:37201421-37201440 None:intergenic 25.0%
! AAGATTATCCTATGAAAATC+TGG + chr1.4:37201107-37201126 None:intergenic 25.0%
! AATTATTATCAGAGTCTTTG+TGG - chr1.4:37203106-37203125 MS.gene068149:intron 25.0%
! AGAAATATGTGGAGAAATAT+TGG - chr1.4:37201279-37201298 MS.gene068149:CDS 25.0%
! ATATTGTGGAATTGAAAATG+GGG - chr1.4:37203059-37203078 MS.gene068149:intron 25.0%
! GTCATTATAACTTCAAAAGA+GGG + chr1.4:37202149-37202168 None:intergenic 25.0%
! GTGTTTAATGTTTCAATTGT+AGG - chr1.4:37203226-37203245 MS.gene068149:CDS 25.0%
! TATTTCTCCACATATTTCTT+AGG + chr1.4:37201278-37201297 None:intergenic 25.0%
! TGGAGAAAATTTATGAAAGA+AGG - chr1.4:37203148-37203167 MS.gene068149:intron 25.0%
! TGTCATTATAACTTCAAAAG+AGG + chr1.4:37202150-37202169 None:intergenic 25.0%
!! AATATCAAATCTGTTGATGA+AGG - chr1.4:37201517-37201536 MS.gene068149:intron 25.0%
!! CAAGAAAATTTTCTTTTGGA+CGG + chr1.4:37202731-37202750 None:intergenic 25.0%
!! CCAAAAGAAAATTTTCTTGA+GGG - chr1.4:37202732-37202751 MS.gene068149:CDS 25.0%
!! GAACACTTGAAAGATTTTAA+TGG - chr1.4:37202298-37202317 MS.gene068149:intron 25.0%
!! GTGATTTTTCTCTCTTTTTT+TGG - chr1.4:37201737-37201756 MS.gene068149:intron 25.0%
!! TCCAAAAGAAAATTTTCTTG+AGG - chr1.4:37202731-37202750 MS.gene068149:CDS 25.0%
!!! CATTAGTGGATCATATTTTA+AGG - chr1.4:37201453-37201472 MS.gene068149:CDS 25.0%
!!! TACTTTTAAGAGTTATGCAA+TGG - chr1.4:37201824-37201843 MS.gene068149:CDS 25.0%
!!! TATGCGATTTTTTTTTTGGT+AGG - chr1.4:37201933-37201952 MS.gene068149:CDS 25.0%
!!! TCTCTTTTTTTGGTAGATTT+AGG - chr1.4:37201747-37201766 MS.gene068149:intron 25.0%
!!! TGAACAAAAAATATTTTGGG+TGG - chr1.4:37201346-37201365 MS.gene068149:intron 25.0%
AGGATGTCATGAAAATATTG+TGG - chr1.4:37203045-37203064 MS.gene068149:intron 30.0%
ATGACAAGGTTATAAGAAAG+GGG - chr1.4:37202647-37202666 MS.gene068149:CDS 30.0%
ATTTATGAAAGAAGGCAAAG+TGG - chr1.4:37203156-37203175 MS.gene068149:intron 30.0%
GATGAAGCATAAAACATTCA+AGG - chr1.4:37202881-37202900 MS.gene068149:intron 30.0%
GATGACAAGGTTATAAGAAA+GGG - chr1.4:37202646-37202665 MS.gene068149:CDS 30.0%
GTCATCGACAAAAGAAATAA+AGG + chr1.4:37202632-37202651 None:intergenic 30.0%
TAATGGAACTGCAACAATAA+GGG - chr1.4:37202315-37202334 MS.gene068149:intron 30.0%
TATGTGGAGAAATATTGGAA+AGG - chr1.4:37201284-37201303 MS.gene068149:CDS 30.0%
TTAATGGAACTGCAACAATA+AGG - chr1.4:37202314-37202333 MS.gene068149:intron 30.0%
TTTGCAAAGCCTTTCAAATA+TGG - chr1.4:37201409-37201428 MS.gene068149:intron 30.0%
! AACATGTTCCAGATTTTCAT+AGG - chr1.4:37201096-37201115 MS.gene068149:CDS 30.0%
! CCCTCAAGAAAATTTTCTTT+TGG + chr1.4:37202735-37202754 None:intergenic 30.0%
! GAAAAATCACCTGAGAATTT+TGG + chr1.4:37201727-37201746 None:intergenic 30.0%
! GCATAAAACATTCAAGGTTT+TGG - chr1.4:37202887-37202906 MS.gene068149:intron 30.0%
! GTAAATTTGAGATGATTCGA+CGG - chr1.4:37202458-37202477 MS.gene068149:intron 30.0%
! GTTGCAATTTTATGTCTGAA+AGG - chr1.4:37201850-37201869 MS.gene068149:CDS 30.0%
! TAAACCATGATTTGAAACAG+TGG - chr1.4:37202254-37202273 MS.gene068149:intron 30.0%
! TATTTCTTTTGTCGATGACA+AGG - chr1.4:37202633-37202652 MS.gene068149:CDS 30.0%
!!! ATTTTTTGTTCAACACCGTT+TGG + chr1.4:37201338-37201357 None:intergenic 30.0%
!!! CTGAATTTTTTTGTTGCAGA+GGG - chr1.4:37201250-37201269 MS.gene068149:CDS 30.0%
!!! TCTGAATTTTTTTGTTGCAG+AGG - chr1.4:37201249-37201268 MS.gene068149:CDS 30.0%
AAATGCCAAAGCAAGCTAAA+AGG - chr1.4:37201653-37201672 MS.gene068149:CDS 35.0%
AATGTTACTATTACTCGTGC+CGG - chr1.4:37202496-37202515 MS.gene068149:intron 35.0%
ACCCAGAAAAAATGTGGTAT+GGG - chr1.4:37202382-37202401 MS.gene068149:intron 35.0%
ACTTACCAAGAAATAGCCAT+TGG + chr1.4:37202183-37202202 None:intergenic 35.0%
AGGTAGTAACAAAGTAGCAA+TGG - chr1.4:37202076-37202095 MS.gene068149:intron 35.0%
ATGACACAATCTTACACCAA+TGG - chr1.4:37202164-37202183 MS.gene068149:CDS 35.0%
CAACACCGTTTGGAAATTTA+AGG + chr1.4:37201328-37201347 None:intergenic 35.0%
CAAGCTAAAAGGACAAGAAA+TGG - chr1.4:37201664-37201683 MS.gene068149:CDS 35.0%
CATTAACAGCTTCAGATGTT+AGG + chr1.4:37202121-37202140 None:intergenic 35.0%
CCATTCGCAAAGAAATTACT+AGG - chr1.4:37202526-37202545 MS.gene068149:intron 35.0%
CCTAGTAATTTCTTTGCGAA+TGG + chr1.4:37202529-37202548 None:intergenic 35.0%
CGATGACAAGGTTATAAGAA+AGG - chr1.4:37202645-37202664 MS.gene068149:CDS 35.0%
GGTAAAGAAAGTGATGAATC+AGG - chr1.4:37201562-37201581 MS.gene068149:intron 35.0%
GTAACCACTGTTTCAAATCA+TGG + chr1.4:37202261-37202280 None:intergenic 35.0%
TACCCAGAAAAAATGTGGTA+TGG - chr1.4:37202381-37202400 MS.gene068149:intron 35.0%
TATGGTACCCAGAAAAAATG+TGG - chr1.4:37202376-37202395 MS.gene068149:intron 35.0%
TCCTCTCATCAATCAACTTA+AGG + chr1.4:37203201-37203220 None:intergenic 35.0%
TGTTCTCTTGAAAACTCACT+TGG + chr1.4:37202283-37202302 None:intergenic 35.0%
TTATGCCTGTATTGTACAGA+AGG - chr1.4:37202849-37202868 MS.gene068149:CDS 35.0%
! CCTCTTTTCATAAACTCCTT+CGG + chr1.4:37203028-37203047 None:intergenic 35.0%
! GAGGTGAGTTTGAGATATTA+TGG - chr1.4:37202358-37202377 MS.gene068149:intron 35.0%
! GTTTTATGCTTCATCACATC+AGG + chr1.4:37202876-37202895 None:intergenic 35.0%
! TATAAGAAAGGGGTCTTTTG+TGG - chr1.4:37202657-37202676 MS.gene068149:CDS 35.0%
!! AATCACCTGAGAATTTTGGT+TGG + chr1.4:37201723-37201742 None:intergenic 35.0%
!! ATATTTTGGGTGGAGAGTAA+TGG - chr1.4:37201356-37201375 MS.gene068149:intron 35.0%
!! CAATAAGGGTTGGTAATGAA+AGG - chr1.4:37202329-37202348 MS.gene068149:intron 35.0%
!! TCCTTAAGTTGATTGATGAG+AGG - chr1.4:37203197-37203216 MS.gene068149:intron 35.0%
!! TTACACCAATGGCTATTTCT+TGG - chr1.4:37202175-37202194 MS.gene068149:CDS 35.0%
!!! ACCCATACCACATTTTTTCT+GGG + chr1.4:37202386-37202405 None:intergenic 35.0%
!!! ATCACCTGAGAATTTTGGTT+GGG + chr1.4:37201722-37201741 None:intergenic 35.0%
AAAAAATGTGGTATGGGTGG+TGG - chr1.4:37202388-37202407 MS.gene068149:intron 40.0%
AAAGAAGGCAAAGTGGAGAT+TGG - chr1.4:37203163-37203182 MS.gene068149:intron 40.0%
AAGTGATGACAGTTCAGATG+AGG - chr1.4:37201627-37201646 MS.gene068149:CDS 40.0%
AGTTAATGCCTAAACTTGGC+AGG - chr1.4:37202056-37202075 MS.gene068149:intron 40.0%
CAAAGTAGCAATGGTGAAGA+AGG - chr1.4:37202085-37202104 MS.gene068149:intron 40.0%
CAGAAAAAATGTGGTATGGG+TGG - chr1.4:37202385-37202404 MS.gene068149:intron 40.0%
CCGAAGGAGTTTATGAAAAG+AGG - chr1.4:37203025-37203044 MS.gene068149:intron 40.0%
CTCTTCATGACTTTCTTCTG+TGG + chr1.4:37201596-37201615 None:intergenic 40.0%
GAGGGTTCCTAAGAAATATG+TGG - chr1.4:37201268-37201287 MS.gene068149:CDS 40.0%
GTGGAGAGTAATGGTGATAT+TGG - chr1.4:37201365-37201384 MS.gene068149:intron 40.0%
GTTGCAAAGAAGGAAGACAT+TGG - chr1.4:37202687-37202706 MS.gene068149:CDS 40.0%
TGAAAATGGGGAGAAAGTCA+TGG - chr1.4:37203071-37203090 MS.gene068149:intron 40.0%
TGTTACTACCTGCCAAGTTT+AGG + chr1.4:37202067-37202086 None:intergenic 40.0%
TTTGGTGAAGAACACAGAAC+CGG - chr1.4:37202905-37202924 MS.gene068149:intron 40.0%
!! GTGGTGGATGGAAAATATTC+AGG - chr1.4:37202404-37202423 MS.gene068149:intron 40.0%
!! TGGTAAGAGTGTTGCAAAGA+AGG - chr1.4:37202677-37202696 MS.gene068149:CDS 40.0%
!!! CACCCATACCACATTTTTTC+TGG + chr1.4:37202387-37202406 None:intergenic 40.0%
!!! CTTGTCCTTTTAGCTTGCTT+TGG + chr1.4:37201661-37201680 None:intergenic 40.0%
ACATTGGAGGAACGTCTTCT+AGG - chr1.4:37202703-37202722 MS.gene068149:CDS 45.0%
ACCACCCAACCAAAATTCTC+AGG - chr1.4:37201715-37201734 MS.gene068149:intron 45.0%
AGCTGAAGACACAGAAGAAG+AGG - chr1.4:37201540-37201559 MS.gene068149:intron 45.0%
CAGGACCTTCTGTACAATAC+AGG + chr1.4:37202857-37202876 None:intergenic 45.0%
CTTTGCGAATGGTTCGTTTC+CGG + chr1.4:37202518-37202537 None:intergenic 45.0%
GCAAAGAAGGAAGACATTGG+AGG - chr1.4:37202690-37202709 MS.gene068149:CDS 45.0%
GCTGAAGACACAGAAGAAGA+GGG - chr1.4:37201541-37201560 MS.gene068149:intron 45.0%
GCTGCAGATTCAGTAAAGGT+TGG - chr1.4:37203128-37203147 MS.gene068149:intron 45.0%
GGAACTGCAACAATAAGGGT+TGG - chr1.4:37202319-37202338 MS.gene068149:intron 45.0%
GTATTTGCAGTGTGTACCGA+AGG - chr1.4:37203009-37203028 MS.gene068149:intron 45.0%
TGATGACAGTTCAGATGAGG+TGG - chr1.4:37201630-37201649 MS.gene068149:CDS 45.0%
TGGCAAGAGAAAAGCGAGTA+TGG - chr1.4:37201684-37201703 MS.gene068149:intron 45.0%
TGTGGCTGCAGATTCAGTAA+AGG - chr1.4:37203124-37203143 MS.gene068149:intron 45.0%
! TGGTAATGAAAGGAGTGTGG+AGG - chr1.4:37202339-37202358 MS.gene068149:intron 45.0%
!! GGTTGGTAATGAAAGGAGTG+TGG - chr1.4:37202336-37202355 MS.gene068149:intron 45.0%
!!! ACCTGAGAATTTTGGTTGGG+TGG + chr1.4:37201719-37201738 None:intergenic 45.0%
!! AAAAATAATAAATACTTAAT+TGG - chr1.4:37201983-37202002 MS.gene068149:CDS 5.0%
GTGAAGAACACAGAACCGGT+AGG - chr1.4:37202909-37202928 MS.gene068149:intron 50.0%
!! AATGTGGTATGGGTGGTGGA+TGG - chr1.4:37202392-37202411 MS.gene068149:intron 50.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 37201086 37203261 37201086 ID=MS.gene068149
chr1.4 mRNA 37201086 37203261 37201086 ID=MS.gene068149.t1;Parent=MS.gene068149
chr1.4 exon 37203205 37203261 37203205 ID=MS.gene068149.t1.exon1;Parent=MS.gene068149.t1
chr1.4 CDS 37203205 37203261 37203205 ID=cds.MS.gene068149.t1;Parent=MS.gene068149.t1
chr1.4 exon 37202611 37202872 37202611 ID=MS.gene068149.t1.exon2;Parent=MS.gene068149.t1
chr1.4 CDS 37202611 37202872 37202611 ID=cds.MS.gene068149.t1;Parent=MS.gene068149.t1
chr1.4 exon 37202151 37202269 37202151 ID=MS.gene068149.t1.exon3;Parent=MS.gene068149.t1
chr1.4 CDS 37202151 37202269 37202151 ID=cds.MS.gene068149.t1;Parent=MS.gene068149.t1
chr1.4 exon 37201800 37202073 37201800 ID=MS.gene068149.t1.exon4;Parent=MS.gene068149.t1
chr1.4 CDS 37201800 37202073 37201800 ID=cds.MS.gene068149.t1;Parent=MS.gene068149.t1
chr1.4 exon 37201594 37201692 37201594 ID=MS.gene068149.t1.exon5;Parent=MS.gene068149.t1
chr1.4 CDS 37201594 37201692 37201594 ID=cds.MS.gene068149.t1;Parent=MS.gene068149.t1
chr1.4 exon 37201421 37201479 37201421 ID=MS.gene068149.t1.exon6;Parent=MS.gene068149.t1
chr1.4 CDS 37201421 37201479 37201421 ID=cds.MS.gene068149.t1;Parent=MS.gene068149.t1
chr1.4 exon 37201086 37201328 37201086 ID=MS.gene068149.t1.exon7;Parent=MS.gene068149.t1
chr1.4 CDS 37201086 37201328 37201086 ID=cds.MS.gene068149.t1;Parent=MS.gene068149.t1
Gene Sequence

>MS.gene068149

ATGTTAGTTCAACATGTTCCAGATTTTCATAGGATAATCTTGCAAGATAAGAAACTTGTAAGCATGTTATAAAGAATTATTTTGCAAATTTACATTATGTTTCATTTATTCTGTAAACCCTATTGTTTATGTATCATTGTTTTAAAAATGTTAATGTATGATTTCTGAATTTTTTTGTTGCAGAGGGTTCCTAAGAAATATGTGGAGAAATATTGGAAAGGAATATCAAACCCTATATTCCTTAAATTTCCAAACGGTGTTGAACAAAAAATATTTTGGGTGGAGAGTAATGGTGATATTGGTTTCAAAAAAATTGGGAAAGTTTTGCAAAGCCTTTCAAATATGGATATCTCTTAACTTTCAAATTCATTAGTGGATCATATTTTAAGGTGAAGATATTTGGTGCCAATACTTTAGAAATAAATTATGTCAATATCAAATCTGTTGATGAAGGAGCTGAAGACACAGAAGAAGAGGGTAAAGAAAGTGATGAATCAGGTGATAATGCCACAGAAGAAAGTCATGAAGAGAGTGATGAATCAAGTGATGACAGTTCAGATGAGGTGGAAATGCCAAAGCAAGCTAAAAGGACAAGAAATGGCAAGAGAAAAGCGAGTATGGATTTTGACACCACCCAACCAAAATTCTCAGGTGATTTTTCTCTCTTTTTTTGGTAGATTTAGGCTTGTCTGTTACTCTATTTCTTTAAAAATAAATCACTTGTTTTATAGAAATAATTACTTTTAAGAGTTATGCAATGGTTTGTTGCAATTTTATGTCTGAAAGGCTGAAAATCTTTGAAAGAAAAATGTCTTGAAGTGCTCAATAGATACTTTTTATATAAAAATATGCGATTTTTTTTTTGGTAGGAAAAATATGTGATTTTTAGTATGATAAAAAAATAATAAATACTTAATTGGTTTTCTTAAAATCTTCTAAAAACAATATCTAAATCAAATGTATAATAAATAGTTAATGCCTAAACTTGGCAGGTAGTAACAAAGTAGCAATGGTGAAGAAGGCTAGAAAATACCTAACATCTGAAGCTGTTAATGAGAATCCCTCTTTTGAAGTTATAATGACACAATCTTACACCAATGGCTATTTCTTGGTAAGTTTGCTATACAAAGTATCTATTAATTTAAGCTTTAATTAATAATATATCTACTAAACCATGATTTGAAACAGTGGTTACCAAGTGAGTTTTCAAGAGAACACTTGAAAGATTTTAATGGAACTGCAACAATAAGGGTTGGTAATGAAAGGAGTGTGGAGGTGAGTTTGAGATATTATGGTACCCAGAAAAAATGTGGTATGGGTGGTGGATGGAAAATATTCAGGCAAAAATATAATTTGCAAGTTGATGATGTTTGTAAATTTGAGATGATTCGACGGAGACCAATTTCATTCAATGTTACTATTACTCGTGCCGGAAACGAACCATTCGCAAAGAAATTACTAGGTTTTAATTCTTTCATTCTCTTTTATTTGCTTTTTTGTATGTTATAATTTTTTTATTTGATATTTGATTAAAATCTGTTTTCCTTTATTTCTTTTGTCGATGACAAGGTTATAAGAAAGGGGTCTTTTGTGGTAAGAGTGTTGCAAAGAAGGAAGACATTGGAGGAACGTCTTCTAGGAGCCGTCCAAAAGAAAATTTTCTTGAGGGTATTCTTCTAACTTTTTAAAGTTTTTAGATTTTACTATTGTAAAGTTTTTTTTCTTCATTTTATAAAAATAGATTAGATGATATCATTTTGTGTTTATGCCTGTATTGTACAGAAGGTCCTGATGTGATGAAGCATAAAACATTCAAGGTTTTGGTGAAGAACACAGAACCGGTAGGATTAATTAAATAAAATATAGTTACATATATAGATAGAGATGTTAGAACTACAAAATAAATAAATGATATTTTTGTTTGTATTTGCAGTGTGTACCGAAGGAGTTTATGAAAAGAGGATGTCATGAAAATATTGTGGAATTGAAAATGGGGAGAAAGTCATGGTTCGTAAAAGTCAATTATTATCAGAGTCTTTGTGGCTGCAGATTCAGTAAAGGTTGGAGAAAATTTATGAAAGAAGGCAAAGTGGAGATTGGAGATACTTGTCTCCTTAAGTTGATTGATGAGAGGAAATTTGTGTTTAATGTTTCAATTGTAGGAAAGAACCAATAA
Protein sequence

>MS.gene068149.t1

MLVQHVPDFHRIILQDKKLVKIFGANTLEINYVNIKSVDEGAEDTEEEGKESDESGDNATEESHEESDESSDDSSDEVEMPKQAKRTRNGKRKASMDFDTTQPKFSGSNKVAMVKKARKYLTSEAVNENPSFEVIMTQSYTNGYFLWLPSEFSREHLKDFNGTATIRVGNERSVEVSLRYYGTQKKCGMGGGWKIFRQKYNLQVDDVCKFEMIRRRPISFNVTITRAGNEPFAKKLLGYKKGVFCGKSVAKKEDIGGTSSRSRPKENFLEEGPDVMKHKTFKVLVKNTEPCVPKEFMKRGCHENIVELKMGRKSWFVKVNYYQSLCGCRFSKGWRKFMKEGKVEIGDTCLLKLIDERKFVFNVSIVGKNQ