Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068144.t1 | KEH40808.1 | 72.2 | 432 | 56 | 4 | 2 | 399 | 64 | 465 | 1.60E-138 | 502.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068144.t1 | A0A072VHA4 | 72.2 | 432 | 56 | 4 | 2 | 399 | 64 | 465 | 1.2e-138 | 502.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene068144.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068144.t1 | MTR_1g035640 | 73.611 | 432 | 50 | 4 | 2 | 399 | 64 | 465 | 0.0 | 595 |
| MS.gene068144.t1 | MTR_1g035490 | 44.242 | 330 | 130 | 6 | 72 | 399 | 52 | 329 | 1.46e-85 | 263 |
| MS.gene068144.t1 | MTR_1g035620 | 40.199 | 403 | 172 | 15 | 2 | 397 | 68 | 408 | 3.31e-75 | 239 |
| MS.gene068144.t1 | MTR_1g050845 | 40.270 | 370 | 142 | 14 | 2 | 365 | 68 | 364 | 1.76e-56 | 199 |
| MS.gene068144.t1 | MTR_1g035570 | 43.600 | 250 | 107 | 5 | 2 | 233 | 64 | 297 | 6.32e-54 | 184 |
| MS.gene068144.t1 | MTR_1g035570 | 68.041 | 97 | 31 | 0 | 303 | 399 | 299 | 395 | 1.02e-35 | 135 |
| MS.gene068144.t1 | MTR_6g061070 | 32.927 | 410 | 202 | 14 | 27 | 398 | 96 | 470 | 8.78e-45 | 161 |
| MS.gene068144.t1 | MTR_8g103940 | 26.471 | 306 | 191 | 10 | 101 | 397 | 213 | 493 | 5.95e-22 | 97.8 |
| MS.gene068144.t1 | MTR_5g044670 | 27.092 | 251 | 158 | 8 | 2 | 236 | 75 | 316 | 7.20e-18 | 84.3 |
| MS.gene068144.t1 | MTR_1g108780 | 24.585 | 301 | 179 | 11 | 115 | 397 | 186 | 456 | 1.92e-17 | 84.3 |
| MS.gene068144.t1 | MTR_1g035650 | 43.103 | 116 | 57 | 2 | 32 | 143 | 93 | 203 | 9.18e-16 | 75.9 |
| MS.gene068144.t1 | MTR_1g035540 | 57.447 | 47 | 20 | 0 | 189 | 235 | 32 | 78 | 8.77e-13 | 65.5 |
| MS.gene068144.t1 | MTR_1g035520 | 27.717 | 184 | 109 | 5 | 221 | 398 | 218 | 383 | 4.45e-12 | 67.4 |
| MS.gene068144.t1 | MTR_1g035510 | 40.000 | 90 | 49 | 2 | 264 | 351 | 136 | 222 | 3.76e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 71 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTTCAACAAGAAATATTT+TGG | 0.149501 | 1.4:-37056892 | MS.gene068144:CDS |
| TAAAGGTTGGATAAAATTTA+TGG | 0.171908 | 1.4:-37052988 | MS.gene068144:CDS |
| TATTTCAAGGTTAAGATATT+TGG | 0.184615 | 1.4:-37056767 | MS.gene068144:intron |
| TTTGGAAATTTAAGAAATAT+TGG | 0.199105 | 1.4:+37056917 | None:intergenic |
| AAAGAAGGGATTCTCATTAT+TGG | 0.209323 | 1.4:+37056337 | None:intergenic |
| CCTTGAAGAGCTTGCACTTT+TGG | 0.221116 | 1.4:+37055377 | None:intergenic |
| CCCTGAAGAGCATGCACTTT+TGG | 0.222036 | 1.4:+37055187 | None:intergenic |
| TCCAAAAGTGCATGCTCTTC+AGG | 0.235087 | 1.4:-37055188 | MS.gene068144:CDS |
| CTTAGGGTTTGGTCCCTTGA+TGG | 0.254887 | 1.4:+37055944 | None:intergenic |
| GCATGCACCAAAGAGATTTA+TGG | 0.255225 | 1.4:-37053111 | MS.gene068144:CDS |
| ACACAATACATTCAAGGTTT+TGG | 0.281549 | 1.4:-37053250 | MS.gene068144:CDS |
| AGAAATATGTGGAGAAATAT+TGG | 0.283749 | 1.4:-37056955 | None:intergenic |
| CCTCTTTCCATAAATCTCTT+TGG | 0.284821 | 1.4:+37053104 | None:intergenic |
| GAAGAAAGCAAAGTGGAAAT+TGG | 0.294808 | 1.4:-37052966 | MS.gene068144:CDS |
| ATTTCTTGTTGAACACCATT+TGG | 0.331479 | 1.4:+37056899 | None:intergenic |
| TTGGAAATTTAAGAAATATT+GGG | 0.332062 | 1.4:+37056918 | None:intergenic |
| CCTTGCAACTTCTTAGGGTT+TGG | 0.347894 | 1.4:+37055933 | None:intergenic |
| GTTATCATTTGAGCTTCCTT+TGG | 0.355140 | 1.4:+37056635 | None:intergenic |
| AATTAACCCTACCGGGTGTT+TGG | 0.385019 | 1.4:+37053221 | None:intergenic |
| TATAAAGAAGGGATCTCTTA+TGG | 0.386855 | 1.4:-37055452 | MS.gene068144:CDS |
| CCAAAAGTGCAAGCTCTTCA+AGG | 0.388417 | 1.4:-37055377 | MS.gene068144:intron |
| TTTGGTATTTCACTCTCATC+AGG | 0.395950 | 1.4:+37056653 | None:intergenic |
| GAAGCTCAAATGATAACAAA+TGG | 0.398449 | 1.4:-37056629 | MS.gene068144:CDS |
| TGTCATTAAAACTTCAAAGA+AGG | 0.419675 | 1.4:+37056322 | None:intergenic |
| AAAATTGTGGAGTTGAAAAT+GGG | 0.422112 | 1.4:-37053071 | MS.gene068144:CDS |
| GTGTTTAAAGTTTCCATTGT+GGG | 0.433176 | 1.4:-37052903 | MS.gene068144:CDS |
| GATGAAACACAATACATTCA+AGG | 0.445828 | 1.4:-37053256 | MS.gene068144:CDS |
| CCAAAAGTGCATGCTCTTCA+GGG | 0.454566 | 1.4:-37055187 | MS.gene068144:intron |
| CGTGGTTGTCAGTTCAGTAA+AGG | 0.468915 | 1.4:-37053005 | MS.gene068144:CDS |
| AACTGACAACCACGAATACT+AGG | 0.474382 | 1.4:+37053014 | None:intergenic |
| ATTTATTATCCTAGTATTCG+TGG | 0.474870 | 1.4:-37053023 | MS.gene068144:CDS |
| TACTATTACTAAAGCCATCA+AGG | 0.479367 | 1.4:-37055958 | MS.gene068144:CDS |
| GTCATTAAAACTTCAAAGAA+GGG | 0.479979 | 1.4:+37056323 | None:intergenic |
| CCGTGACAAGGTTATAAAGA+AGG | 0.482547 | 1.4:-37055274 | MS.gene068144:intron |
| TTACGCCCATGGTCATATCT+TGG | 0.485636 | 1.4:-37056294 | MS.gene068144:intron |
| CCATGACAAGGTTATAAAGA+AGG | 0.491612 | 1.4:-37055464 | MS.gene068144:intron |
| TCTTCTAGTTCTATGACTAC+TGG | 0.492100 | 1.4:-37056071 | MS.gene068144:CDS |
| ATATTTCTTAAATTTCCAAA+TGG | 0.500935 | 1.4:-37056914 | MS.gene068144:CDS |
| ATAGTAATAGTGAATAAAAG+TGG | 0.509655 | 1.4:+37055975 | None:intergenic |
| CCAAAGAGATTTATGGAAAG+AGG | 0.511759 | 1.4:-37053104 | MS.gene068144:CDS |
| AAGCTCAAATGATAACAAAT+GGG | 0.514121 | 1.4:-37056628 | MS.gene068144:CDS |
| AAGACATTGGAGAAACTTGT+AGG | 0.516345 | 1.4:-37055216 | MS.gene068144:CDS |
| TCATACTTGAACAAATTTGA+AGG | 0.519341 | 1.4:-37056161 | MS.gene068144:CDS |
| CATACTTGAACAAATTTGAA+GGG | 0.523429 | 1.4:-37056160 | MS.gene068144:CDS |
| AAGACGCTAGAGAAACTTGT+AGG | 0.526317 | 1.4:-37055406 | MS.gene068144:CDS |
| GGGATTGCAAGCTTAAGAGT+TGG | 0.529065 | 1.4:-37056140 | MS.gene068144:CDS |
| ATGATCATGATATTCTAAAG+AGG | 0.534079 | 1.4:-37055240 | MS.gene068144:CDS |
| GTTGTCAGTTCAGTAAAGGT+TGG | 0.536590 | 1.4:-37053001 | MS.gene068144:CDS |
| TGCAAGCTTAAGAGTTGGAG+AGG | 0.542791 | 1.4:-37056135 | MS.gene068144:CDS |
| ATTCTAAAGAGGAAAGACAT+TGG | 0.551775 | 1.4:-37055229 | MS.gene068144:CDS |
| CATGACAAGGTTATAAAGAA+GGG | 0.554767 | 1.4:-37055463 | MS.gene068144:intron |
| CGTGACAAGGTTATAAAGAA+GGG | 0.558822 | 1.4:-37055273 | MS.gene068144:intron |
| CTAGTTCTATGACTACTGGT+TGG | 0.576587 | 1.4:-37056067 | MS.gene068144:CDS |
| AGAGGAGACAGCTATGAAAG+TGG | 0.577915 | 1.4:-37056117 | MS.gene068144:CDS |
| TATGATCTTGAAAAGTTGCA+TGG | 0.578670 | 1.4:+37056179 | None:intergenic |
| GTGATCGTGATGTTCTAAAG+AGG | 0.587079 | 1.4:-37055430 | MS.gene068144:CDS |
| GAAATACTTGTCTCCTAGAG+CGG | 0.589908 | 1.4:-37052944 | MS.gene068144:CDS |
| CCAAACCCTAAGAAGTTGCA+AGG | 0.590895 | 1.4:-37055933 | MS.gene068144:intron |
| ATGACACAAACTTACGCCCA+TGG | 0.594951 | 1.4:-37056305 | MS.gene068144:CDS |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1.4:-37056950 | MS.gene068144:CDS |
| ACTATTACTAAAGCCATCAA+GGG | 0.618938 | 1.4:-37055957 | MS.gene068144:CDS |
| ATTTATGGAAGAAAGCAAAG+TGG | 0.622753 | 1.4:-37052973 | MS.gene068144:CDS |
| AAATTGTGGAGTTGAAAATG+GGG | 0.628496 | 1.4:-37053070 | MS.gene068144:CDS |
| AATTGTGGAGTTGAAAATGG+GGG | 0.632867 | 1.4:-37053069 | MS.gene068144:CDS |
| TTTGGTAAATTCCAAACACC+CGG | 0.637463 | 1.4:-37053232 | MS.gene068144:intron |
| TGATGAGAGTGAAATACCAA+AGG | 0.651200 | 1.4:-37056651 | MS.gene068144:CDS |
| ATTGTGGAGTTGAAAATGGG+GGG | 0.654265 | 1.4:-37053068 | MS.gene068144:CDS |
| TGTGTTTAAAGTTTCCATTG+TGG | 0.655197 | 1.4:-37052904 | MS.gene068144:CDS |
| ACTTACCAAGATATGACCAT+GGG | 0.667874 | 1.4:+37056289 | None:intergenic |
| TATAAGGTTCTATCCCACAA+TGG | 0.669677 | 1.4:+37052890 | None:intergenic |
| TACTTACCAAGATATGACCA+TGG | 0.678715 | 1.4:+37056288 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATATATTATAAAAAT+AGG | - | chr1.4:37056275-37056294 | MS.gene068144:intron | 0.0% |
| !!! | TTTTATAATATATTTTTATA+GGG | + | chr1.4:37056273-37056292 | None:intergenic | 0.0% |
| !!! | TTTTTATAATATATTTTTAT+AGG | + | chr1.4:37056274-37056293 | None:intergenic | 0.0% |
| !! | ACAAAATATTTAATAATTCA+AGG | - | chr1.4:37056130-37056149 | MS.gene068144:CDS | 10.0% |
| !! | ATAAAAAATATATAACCATT+TGG | - | chr1.4:37056377-37056396 | MS.gene068144:CDS | 10.0% |
| !! | ATAAAAATAATAATCTAAAG+AGG | - | chr1.4:37055832-37055851 | MS.gene068144:intron | 10.0% |
| !! | TAAAATTTCTTTCAAATTTA+TGG | + | chr1.4:37055421-37055440 | None:intergenic | 10.0% |
| !! | TTAACTAAATAAAGAAATTA+AGG | + | chr1.4:37054180-37054199 | None:intergenic | 10.0% |
| !!! | AAAATCTCTAATTTTTTTTT+GGG | - | chr1.4:37056305-37056324 | MS.gene068144:CDS | 10.0% |
| !!! | AAAATTAGAGATTTTTAAAT+AGG | + | chr1.4:37056243-37056262 | None:intergenic | 10.0% |
| !!! | ATAATGTATAAATGTTATTT+TGG | - | chr1.4:37056702-37056721 | MS.gene068144:CDS | 10.0% |
| !!! | CTATTTAAAATTAATGTTTA+AGG | + | chr1.4:37055398-37055417 | None:intergenic | 10.0% |
| !!! | GAATTATTAAATATTTTGTA+AGG | + | chr1.4:37056129-37056148 | None:intergenic | 10.0% |
| !!! | TAAAAATCTCTAATTTTTTT+GGG | - | chr1.4:37056246-37056265 | MS.gene068144:intron | 10.0% |
| !!! | TAAAATCTCTAATTTTTTTT+TGG | - | chr1.4:37056304-37056323 | MS.gene068144:CDS | 10.0% |
| !!! | TTAAAAATCTCTAATTTTTT+TGG | - | chr1.4:37056245-37056264 | MS.gene068144:intron | 10.0% |
| !!! | TTAATTTTTAAATATATTGG+TGG | - | chr1.4:37053054-37053073 | MS.gene068144:CDS | 10.0% |
| !! | AAAAACTATTGATATGTTTA+AGG | - | chr1.4:37056187-37056206 | MS.gene068144:CDS | 15.0% |
| !! | AAAACTATTGATATGTTTAA+GGG | - | chr1.4:37056188-37056207 | MS.gene068144:CDS | 15.0% |
| !! | AAATTATTGATAAGTTTAGA+GGG | + | chr1.4:37055291-37055310 | None:intergenic | 15.0% |
| !! | ATATTTCTTAAATTTCCAAA+TGG | - | chr1.4:37052934-37052953 | MS.gene068144:CDS | 15.0% |
| !! | CAAAATATTAAATAGTTCAA+GGG | - | chr1.4:37055684-37055703 | MS.gene068144:intron | 15.0% |
| !! | TAAATTATTGATAAGTTTAG+AGG | + | chr1.4:37055292-37055311 | None:intergenic | 15.0% |
| !! | TCTAAAAATGTCTATTAATT+TGG | - | chr1.4:37053587-37053606 | MS.gene068144:intron | 15.0% |
| !! | TTGGAAATTTAAGAAATATT+GGG | + | chr1.4:37052933-37052952 | None:intergenic | 15.0% |
| !! | TTTCTAATATATAAGTTTAG+AGG | + | chr1.4:37056012-37056031 | None:intergenic | 15.0% |
| !! | TTTGGAAATTTAAGAAATAT+TGG | + | chr1.4:37052934-37052953 | None:intergenic | 15.0% |
| !!! | AAACATTTTCAAAGAAATTA+AGG | + | chr1.4:37055634-37055653 | None:intergenic | 15.0% |
| !!! | AAAGATTTAGAGATTTTTAA+AGG | + | chr1.4:37056333-37056352 | None:intergenic | 15.0% |
| !!! | ACTTTTAAATAATTTGTGAA+TGG | - | chr1.4:37056102-37056121 | MS.gene068144:CDS | 15.0% |
| !!! | AGAAAAATCCATTTTTATAT+TGG | - | chr1.4:37056027-37056046 | MS.gene068144:CDS | 15.0% |
| !!! | ATAAGTAAATTCATTTTCAA+AGG | + | chr1.4:37053334-37053353 | None:intergenic | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | - | chr1.4:37052995-37053014 | MS.gene068144:CDS | 15.0% |
| !!! | CATATCAATAGTTTTTATAT+AGG | + | chr1.4:37056183-37056202 | None:intergenic | 15.0% |
| !!! | CTTTTAAATAATTTGTGAAT+GGG | - | chr1.4:37056103-37056122 | MS.gene068144:CDS | 15.0% |
| !!! | GAAAAATCCATTTTTATATT+GGG | - | chr1.4:37056028-37056047 | MS.gene068144:CDS | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | - | chr1.4:37052996-37053015 | MS.gene068144:CDS | 15.0% |
| !!! | TTAAGGATACATTTTTTTTA+GGG | + | chr1.4:37055381-37055400 | None:intergenic | 15.0% |
| !!! | TTGATAATAATATTCTAAAG+AGG | - | chr1.4:37054799-37054818 | MS.gene068144:intron | 15.0% |
| !!! | TTTAAGGATACATTTTTTTA+GGG | + | chr1.4:37055356-37055375 | None:intergenic | 15.0% |
| !!! | TTTAAGGATACATTTTTTTT+AGG | + | chr1.4:37055382-37055401 | None:intergenic | 15.0% |
| !! | AAAATATATAACCATTTGGT+TGG | - | chr1.4:37056381-37056400 | MS.gene068144:CDS | 20.0% |
| !! | AAGGAAACATGATATTAAAA+AGG | + | chr1.4:37053315-37053334 | None:intergenic | 20.0% |
| !! | ACAAATTATTGATGTGTTTA+AGG | - | chr1.4:37055540-37055559 | MS.gene068144:intron | 20.0% |
| !! | AGGGTTAATTACATAAAATA+TGG | - | chr1.4:37056640-37056659 | MS.gene068144:CDS | 20.0% |
| !! | ATAGTAATAGTGAATAAAAG+TGG | + | chr1.4:37053876-37053895 | None:intergenic | 20.0% |
| !! | CAAAAATATAACTTAGAAGT+TGG | - | chr1.4:37053816-37053835 | MS.gene068144:intron | 20.0% |
| !! | CACTAATCTATAATAAAATG+TGG | - | chr1.4:37053623-37053642 | MS.gene068144:intron | 20.0% |
| !! | GCAAAATATTAAATAGTTCA+AGG | - | chr1.4:37055683-37055702 | MS.gene068144:intron | 20.0% |
| !! | TAAAGGTTGGATAAAATTTA+TGG | - | chr1.4:37056860-37056879 | MS.gene068144:intron | 20.0% |
| !! | TATTTCAAGGTTAAGATATT+TGG | - | chr1.4:37053081-37053100 | MS.gene068144:CDS | 20.0% |
| !! | TTGAACCTTAGAAAATATTT+AGG | - | chr1.4:37055480-37055499 | MS.gene068144:intron | 20.0% |
| !!! | ACATTTTTTTAGGGAATTTA+AGG | + | chr1.4:37055347-37055366 | None:intergenic | 20.0% |
| !!! | CAACTTCTAAGTTATATTTT+TGG | + | chr1.4:37053818-37053837 | None:intergenic | 20.0% |
| !!! | CACATCAATAATTTGTATAT+AGG | + | chr1.4:37055536-37055555 | None:intergenic | 20.0% |
| !!! | CATCTTTTTGAATTGTTATT+TGG | - | chr1.4:37055745-37055764 | MS.gene068144:intron | 20.0% |
| !!! | GAATTCCTAAATATTTTCTA+AGG | + | chr1.4:37055488-37055507 | None:intergenic | 20.0% |
| !!! | GTTTAAGGATACATTTTTTT+AGG | + | chr1.4:37055357-37055376 | None:intergenic | 20.0% |
| !!! | TCAGTAAATTAATTTTTCGT+TGG | - | chr1.4:37056155-37056174 | MS.gene068144:CDS | 20.0% |
| !!! | TCATTTTCCCAATATAAAAA+TGG | + | chr1.4:37056038-37056057 | None:intergenic | 20.0% |
| !!! | TGTTCAACAAGAAATATTTT+GGG | - | chr1.4:37052957-37052976 | MS.gene068144:CDS | 20.0% |
| !!! | TTCATCAACAGATTTTATAT+TGG | + | chr1.4:37053133-37053152 | None:intergenic | 20.0% |
| !!! | TTTAGATTTTACTATTGTGA+AGG | - | chr1.4:37055935-37055954 | MS.gene068144:CDS | 20.0% |
| !!! | TTTTTATATTGGGAAAATGA+AGG | - | chr1.4:37056038-37056057 | MS.gene068144:CDS | 20.0% |
| ! | AAAAATTGTGGAGTTGAAAA+TGG | - | chr1.4:37056776-37056795 | MS.gene068144:intron | 25.0% |
| ! | AAAATTGTGGAGTTGAAAAT+GGG | - | chr1.4:37056777-37056796 | MS.gene068144:intron | 25.0% |
| ! | AAAGTTTGAAGATTATACCA+TGG | + | chr1.4:37055179-37055198 | None:intergenic | 25.0% |
| ! | AACTTCTTTATAACCTTGTA+AGG | + | chr1.4:37054769-37054788 | None:intergenic | 25.0% |
| ! | AAGCTCAAATGATAACAAAT+GGG | - | chr1.4:37053220-37053239 | MS.gene068144:intron | 25.0% |
| ! | AAGTTTGAAGATTATACCAT+GGG | + | chr1.4:37055178-37055197 | None:intergenic | 25.0% |
| ! | AATCTAAAGAGGAAATTCAT+TGG | - | chr1.4:37055843-37055862 | MS.gene068144:intron | 25.0% |
| ! | AATTTCTTTGATCCATAACA+AGG | - | chr1.4:37054214-37054233 | MS.gene068144:intron | 25.0% |
| ! | ACTTCTTTATAACCTTGTAA+GGG | + | chr1.4:37054768-37054787 | None:intergenic | 25.0% |
| ! | ATTTATTATCCTAGTATTCG+TGG | - | chr1.4:37056825-37056844 | MS.gene068144:intron | 25.0% |
| ! | CAGTGTTCAGTTATTATTTA+TGG | - | chr1.4:37055508-37055527 | MS.gene068144:intron | 25.0% |
| ! | CATAAATAATAACTGAACAC+TGG | + | chr1.4:37055510-37055529 | None:intergenic | 25.0% |
| ! | CATACTTGAACAAATTTGAA+GGG | - | chr1.4:37053688-37053707 | MS.gene068144:intron | 25.0% |
| ! | GTCATGGATCAAAAAAATTA+AGG | + | chr1.4:37054371-37054390 | None:intergenic | 25.0% |
| ! | GTCATTAAAACTTCAAAGAA+GGG | + | chr1.4:37053528-37053547 | None:intergenic | 25.0% |
| ! | GTTATGGATCAAAGAAATTA+AGG | + | chr1.4:37054213-37054232 | None:intergenic | 25.0% |
| ! | TCATACTTGAACAAATTTGA+AGG | - | chr1.4:37053687-37053706 | MS.gene068144:intron | 25.0% |
| ! | TCTTCTTTATAACCTTGTTA+TGG | + | chr1.4:37054229-37054248 | None:intergenic | 25.0% |
| ! | TGTCATTAAAACTTCAAAGA+AGG | + | chr1.4:37053529-37053548 | None:intergenic | 25.0% |
| !! | ATGATCATGATATTCTAAAG+AGG | - | chr1.4:37054608-37054627 | MS.gene068144:intron | 25.0% |
| !! | ATTTTGTGTGTAGAATCAAA+GGG | - | chr1.4:37056560-37056579 | MS.gene068144:intron | 25.0% |
| !! | GTGTTCAACAAGAAATATTT+TGG | - | chr1.4:37052956-37052975 | MS.gene068144:CDS | 25.0% |
| !! | TTTTATGTAATTAACCCTAC+CGG | + | chr1.4:37056638-37056657 | None:intergenic | 25.0% |
| !!! | AATTTTTTTGATCCATGACA+AGG | - | chr1.4:37054372-37054391 | MS.gene068144:intron | 25.0% |
| !!! | CATTTTTTTTAGGGAGTTTA+AGG | + | chr1.4:37055372-37055391 | None:intergenic | 25.0% |
| AAAAAACCTTGCAACTTCTT+AGG | + | chr1.4:37053924-37053943 | None:intergenic | 30.0% | |
| AAAAACCTTGCAACTTCTTA+GGG | + | chr1.4:37053923-37053942 | None:intergenic | 30.0% | |
| AAAGAAGGGATTCTCATTAT+TGG | + | chr1.4:37053514-37053533 | None:intergenic | 30.0% | |
| AAATTGTGGAGTTGAAAATG+GGG | - | chr1.4:37056778-37056797 | MS.gene068144:intron | 30.0% | |
| AATTTCTTTGATCCATGACA+AGG | - | chr1.4:37055060-37055079 | MS.gene068144:intron | 30.0% | |
| AATTTCTTTGATCCCTTACA+AGG | - | chr1.4:37054753-37054772 | MS.gene068144:intron | 30.0% | |
| ACTATTACTAAAGCCATCAA+GGG | - | chr1.4:37053891-37053910 | MS.gene068144:intron | 30.0% | |
| ATTCTTAAGCAAAAATTCCC+AGG | - | chr1.4:37053270-37053289 | MS.gene068144:CDS | 30.0% | |
| ATTTATGGAAGAAAGCAAAG+TGG | - | chr1.4:37056875-37056894 | MS.gene068144:intron | 30.0% | |
| ATTTCTTGTTGAACACCATT+TGG | + | chr1.4:37052952-37052971 | None:intergenic | 30.0% | |
| CATGACAAGGTTATAAAGAA+GGG | - | chr1.4:37054036-37054055 | MS.gene068144:intron | 30.0% | |
| CATGTCAAGGTTATAAAGAA+AGG | - | chr1.4:37055799-37055818 | MS.gene068144:intron | 30.0% | |
| CTTTCTTTATAACCTTGACA+TGG | + | chr1.4:37055801-37055820 | None:intergenic | 30.0% | |
| GAAGCTCAAATGATAACAAA+TGG | - | chr1.4:37053219-37053238 | MS.gene068144:intron | 30.0% | |
| GATGAAACACAATACATTCA+AGG | - | chr1.4:37056592-37056611 | MS.gene068144:CDS | 30.0% | |
| GTAAGGGATCAAAGAAATTA+AGG | + | chr1.4:37054752-37054771 | None:intergenic | 30.0% | |
| GTCATGGATCAAAGAAATTA+AGG | + | chr1.4:37055059-37055078 | None:intergenic | 30.0% | |
| TACTATTACTAAAGCCATCA+AGG | - | chr1.4:37053890-37053909 | MS.gene068144:intron | 30.0% | |
| TATAAAGAAGGGATCTCTTA+TGG | - | chr1.4:37054396-37054415 | MS.gene068144:intron | 30.0% | |
| TATGATCTTGAAAAGTTGCA+TGG | + | chr1.4:37053672-37053691 | None:intergenic | 30.0% | |
| TGGAGAATAATGGTGATATT+TGG | - | chr1.4:37052980-37052999 | MS.gene068144:CDS | 30.0% | |
| TGTCATGGATCAAAGAAAAT+AGG | + | chr1.4:37054023-37054042 | None:intergenic | 30.0% | |
| TTTATGTAATTAACCCTACC+GGG | + | chr1.4:37056637-37056656 | None:intergenic | 30.0% | |
| TTTGCAAAGTCTCTCAAATA+TGG | - | chr1.4:37053024-37053043 | MS.gene068144:CDS | 30.0% | |
| ! | ACACAATACATTCAAGGTTT+TGG | - | chr1.4:37056598-37056617 | MS.gene068144:CDS | 30.0% |
| ! | ATTCTAAAGAGGAAAGACAT+TGG | - | chr1.4:37054619-37054638 | MS.gene068144:intron | 30.0% |
| ! | ATTTTCTTTGATCCATGACA+AGG | - | chr1.4:37054023-37054042 | MS.gene068144:intron | 30.0% |
| ! | CATTTTGTGTGTAGAATCAA+AGG | - | chr1.4:37056559-37056578 | MS.gene068144:intron | 30.0% |
| ! | GTGTTTAAAGTTTCCATTGT+GGG | - | chr1.4:37056945-37056964 | MS.gene068144:CDS | 30.0% |
| ! | TATTGGTGGATCATATTTCA+AGG | - | chr1.4:37053068-37053087 | MS.gene068144:CDS | 30.0% |
| ! | TCTCAAGTGTCAATTTTTGT+AGG | - | chr1.4:37056440-37056459 | MS.gene068144:intron | 30.0% |
| ! | TGTGTTTAAAGTTTCCATTG+TGG | - | chr1.4:37056944-37056963 | MS.gene068144:CDS | 30.0% |
| !! | ATATTTTGGGTGGAGAATAA+TGG | - | chr1.4:37052970-37052989 | MS.gene068144:CDS | 30.0% |
| !! | TAACAAATGAACTCTAAAGC+AGG | - | chr1.4:37053420-37053439 | MS.gene068144:intron | 30.0% |
| !! | TCAACAAGAAATATTTTGGG+TGG | - | chr1.4:37052960-37052979 | MS.gene068144:CDS | 30.0% |
| AAGAAGTTAGAAGAATACCC+TGG | + | chr1.4:37054872-37054891 | None:intergenic | 35.0% | |
| AAGACATTGGAGAAACATCT+AGG | - | chr1.4:37055130-37055149 | MS.gene068144:intron | 35.0% | |
| AAGACATTGGAGAAACTTGT+AGG | - | chr1.4:37054632-37054651 | MS.gene068144:intron | 35.0% | |
| AATCAAATGAAGTTCTCACC+TGG | + | chr1.4:37053291-37053310 | None:intergenic | 35.0% | |
| AATTCATTGGAGAATCTTGC+AGG | - | chr1.4:37055856-37055875 | MS.gene068144:intron | 35.0% | |
| AATTGTGGAGTTGAAAATGG+GGG | - | chr1.4:37056779-37056798 | MS.gene068144:intron | 35.0% | |
| AATTTCTTTGATCCGTGACA+AGG | - | chr1.4:37054562-37054581 | MS.gene068144:intron | 35.0% | |
| ACTTACCAAGATATGACCAT+GGG | + | chr1.4:37053562-37053581 | None:intergenic | 35.0% | |
| AGGATGTCGTGAAAAAATTG+TGG | - | chr1.4:37056764-37056783 | MS.gene068144:intron | 35.0% | |
| ATCAAATGAAGTTCTCACCT+GGG | + | chr1.4:37053290-37053309 | None:intergenic | 35.0% | |
| CCAAAGAGATTTATGGAAAG+AGG | - | chr1.4:37056744-37056763 | MS.gene068144:CDS | 35.0% | |
| CCATGACAAGGTTATAAAGA+AGG | - | chr1.4:37054035-37054054 | MS.gene068144:intron | 35.0% | |
| CCTCTTTCCATAAATCTCTT+TGG | + | chr1.4:37056747-37056766 | None:intergenic | 35.0% | |
| CCTTCTTTATAACCTTGTCA+CGG | + | chr1.4:37054038-37054057 | None:intergenic | 35.0% | |
| CCTTCTTTATAACCTTGTCA+TGG | + | chr1.4:37054038-37054057 | None:intergenic | 35.0% | |
| CGTGACAAGGTTATAAAGAA+GGG | - | chr1.4:37054575-37054594 | MS.gene068144:intron | 35.0% | |
| GACATGGATCAAAGAAATCA+AGG | + | chr1.4:37055785-37055804 | None:intergenic | 35.0% | |
| GAGACATTGGAGAAATTTGT+CGG | - | chr1.4:37054823-37054842 | MS.gene068144:intron | 35.0% | |
| GATTTCTTTGATCCATGTCA+AGG | - | chr1.4:37055786-37055805 | MS.gene068144:intron | 35.0% | |
| GTCACGGATCAAAGAAATTA+AGG | + | chr1.4:37054561-37054580 | None:intergenic | 35.0% | |
| GTTATCATTTGAGCTTCCTT+TGG | + | chr1.4:37053216-37053235 | None:intergenic | 35.0% | |
| TACTTACCAAGATATGACCA+TGG | + | chr1.4:37053563-37053582 | None:intergenic | 35.0% | |
| TATAAAGAAGGGATCTCTTC+TGG | - | chr1.4:37054047-37054066 | MS.gene068144:intron | 35.0% | |
| TGATGAGAGTGAAATACCAA+AGG | - | chr1.4:37053197-37053216 | MS.gene068144:intron | 35.0% | |
| TGTGGTTCATGAACTGAAAT+AGG | - | chr1.4:37053641-37053660 | MS.gene068144:intron | 35.0% | |
| TTTGGTAAATTCCAAACACC+CGG | - | chr1.4:37056616-37056635 | MS.gene068144:CDS | 35.0% | |
| TTTGGTATTTCACTCTCATC+AGG | + | chr1.4:37053198-37053217 | None:intergenic | 35.0% | |
| ! | ATTCTAAAGAGGAGAGACAT+TGG | - | chr1.4:37054810-37054829 | MS.gene068144:intron | 35.0% |
| ! | GTGATCGTGATATTCTAAAG+AGG | - | chr1.4:37054069-37054088 | MS.gene068144:intron | 35.0% |
| ! | GTGATCGTGATATTCTAAAG+TGG | - | chr1.4:37054069-37054088 | MS.gene068144:intron | 35.0% |
| !! | AAATGAACTCTAAAGCAGGT+AGG | - | chr1.4:37053424-37053443 | MS.gene068144:intron | 35.0% |
| !! | AAGAGCATGCATTTTTGGAA+GGG | + | chr1.4:37054120-37054139 | None:intergenic | 35.0% |
| !! | TCTTCTAGTTCTATGACTAC+TGG | - | chr1.4:37053777-37053796 | MS.gene068144:intron | 35.0% |
| AACTGACAACCACGAATACT+AGG | + | chr1.4:37056837-37056856 | None:intergenic | 40.0% | |
| AAGACACTCGAGAAACTTGT+AGG | - | chr1.4:37054284-37054303 | MS.gene068144:intron | 40.0% | |
| AAGACGCTAGAGAAACTTGT+AGG | - | chr1.4:37054442-37054461 | MS.gene068144:intron | 40.0% | |
| AGACTGTCAAACCAACCAAA+TGG | + | chr1.4:37056395-37056414 | None:intergenic | 40.0% | |
| ATTCTACCGTGGAAAGACAT+TGG | - | chr1.4:37055117-37055136 | MS.gene068144:intron | 40.0% | |
| ATTGTGGAGTTGAAAATGGG+GGG | - | chr1.4:37056780-37056799 | MS.gene068144:intron | 40.0% | |
| CCAAAAATGCATGCTCTTCA+GGG | - | chr1.4:37054122-37054141 | MS.gene068144:intron | 40.0% | |
| CCGTGACAAGGTTATAAAGA+AGG | - | chr1.4:37054574-37054593 | MS.gene068144:intron | 40.0% | |
| GAAATACTTGTCTCCTAGAG+CGG | - | chr1.4:37056904-37056923 | MS.gene068144:CDS | 40.0% | |
| GAGACACTGGAGAAAATTGT+AGG | - | chr1.4:37054093-37054112 | MS.gene068144:intron | 40.0% | |
| GCATGCACCAAAGAGATTTA+TGG | - | chr1.4:37056737-37056756 | MS.gene068144:CDS | 40.0% | |
| GTGATAAGCATATTCTACCG+TGG | - | chr1.4:37055106-37055125 | MS.gene068144:intron | 40.0% | |
| GTTGTCAGTTCAGTAAAGGT+TGG | - | chr1.4:37056847-37056866 | MS.gene068144:intron | 40.0% | |
| GTTTCTCCAATGTCTTTCCA+CGG | + | chr1.4:37055126-37055145 | None:intergenic | 40.0% | |
| TAAATTCCAAACACCCGGTA+GGG | - | chr1.4:37056621-37056640 | MS.gene068144:CDS | 40.0% | |
| TCCAAAAATGCATGCTCTTC+AGG | - | chr1.4:37054121-37054140 | MS.gene068144:intron | 40.0% | |
| ! | ATTCTAAAGAGGAGAGACAC+TGG | - | chr1.4:37054080-37054099 | MS.gene068144:intron | 40.0% |
| ! | CTCTGTAGATCATGCAGTTT+TGG | + | chr1.4:37055888-37055907 | None:intergenic | 40.0% |
| ! | TTTTCTCATCAATCCGCTCT+AGG | + | chr1.4:37056920-37056939 | None:intergenic | 40.0% |
| !! | AAGAGCATGCACTTTTGGAA+GGG | + | chr1.4:37054311-37054330 | None:intergenic | 40.0% |
| !! | AAGAGCTTGCACTTTTGGAA+GGG | + | chr1.4:37054469-37054488 | None:intergenic | 40.0% |
| !! | CTAGTTCTATGACTACTGGT+TGG | - | chr1.4:37053781-37053800 | MS.gene068144:intron | 40.0% |
| !! | GAAGAGCATGCATTTTTGGA+AGG | + | chr1.4:37054121-37054140 | None:intergenic | 40.0% |
| !! | GTGATCGTGATGTTCTAAAG+AGG | - | chr1.4:37054418-37054437 | MS.gene068144:intron | 40.0% |
| !! | TTTGGTTGGTTTGACAGTCT+TGG | - | chr1.4:37056395-37056414 | MS.gene068144:CDS | 40.0% |
| !!! | GTAGATCATGCAGTTTTGGA+CGG | + | chr1.4:37055884-37055903 | None:intergenic | 40.0% |
| AATTAACCCTACCGGGTGTT+TGG | + | chr1.4:37056630-37056649 | None:intergenic | 45.0% | |
| AGAGGAGACAGCTATGAAAG+TGG | - | chr1.4:37053731-37053750 | MS.gene068144:intron | 45.0% | |
| ATGACACAAACTTACGCCCA+TGG | - | chr1.4:37053543-37053562 | MS.gene068144:intron | 45.0% | |
| CCAAACCCTAAGAAGTTGCA+AGG | - | chr1.4:37053915-37053934 | MS.gene068144:intron | 45.0% | |
| CCTTGCAACTTCTTAGGGTT+TGG | + | chr1.4:37053918-37053937 | None:intergenic | 45.0% | |
| CGTGGTTGTCAGTTCAGTAA+AGG | - | chr1.4:37056843-37056862 | MS.gene068144:intron | 45.0% | |
| GGGATTGCAAGCTTAAGAGT+TGG | - | chr1.4:37053708-37053727 | MS.gene068144:intron | 45.0% | |
| GTAAATTCCAAACACCCGGT+AGG | - | chr1.4:37056620-37056639 | MS.gene068144:CDS | 45.0% | |
| TGAAAATGGGGGGACAATCA+TGG | - | chr1.4:37056790-37056809 | MS.gene068144:intron | 45.0% | |
| TGCAAGCTTAAGAGTTGGAG+AGG | - | chr1.4:37053713-37053732 | MS.gene068144:intron | 45.0% | |
| TTACGCCCATGGTCATATCT+TGG | - | chr1.4:37053554-37053573 | MS.gene068144:intron | 45.0% | |
| ! | CCAAAAGTGCAAGCTCTTCA+AGG | - | chr1.4:37054471-37054490 | MS.gene068144:intron | 45.0% |
| ! | CCAAAAGTGCATGATCTCCA+GGG | - | chr1.4:37054852-37054871 | MS.gene068144:intron | 45.0% |
| ! | CCAAAAGTGCATGCTCTTCA+GGG | - | chr1.4:37054313-37054332 | MS.gene068144:intron | 45.0% |
| ! | CCTTGAAGAGCTTGCACTTT+TGG | + | chr1.4:37054474-37054493 | None:intergenic | 45.0% |
| ! | CTAAAAGAGCATGCTTCCCA+TGG | - | chr1.4:37055159-37055178 | MS.gene068144:intron | 45.0% |
| ! | GAAGAGCTTGCACTTTTGGA+AGG | + | chr1.4:37054470-37054489 | None:intergenic | 45.0% |
| ! | GGAGATCATGCACTTTTGGA+CGG | + | chr1.4:37054851-37054870 | None:intergenic | 45.0% |
| ! | TCCAAAAGTGCATGATCTCC+AGG | - | chr1.4:37054851-37054870 | MS.gene068144:intron | 45.0% |
| ! | TCCAAAAGTGCATGCTCTTC+AGG | - | chr1.4:37054312-37054331 | MS.gene068144:intron | 45.0% |
| !! | CCCTGAAGAGCATGCATTTT+TGG | + | chr1.4:37054125-37054144 | None:intergenic | 45.0% |
| !! | GAAGAGCATGCACTTTTGGA+AGG | + | chr1.4:37054312-37054331 | None:intergenic | 45.0% |
| !!! | ATTTATTTGTAATTTTTTTA+TGG | - | chr1.4:37054994-37055013 | MS.gene068144:intron | 5.0% |
| !!! | CTTTTAATTTTTAAATATAT+TGG | - | chr1.4:37053051-37053070 | MS.gene068144:CDS | 5.0% |
| ! | CCCTGGAGATCATGCACTTT+TGG | + | chr1.4:37054855-37054874 | None:intergenic | 50.0% |
| ! | CTTAGGGTTTGGTCCCTTGA+TGG | + | chr1.4:37053907-37053926 | None:intergenic | 50.0% |
| !! | CCCTGAAGAGCATGCACTTT+TGG | + | chr1.4:37054316-37054335 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 37052899 | 37056971 | 37052899 | ID=MS.gene068144 |
| chr1.4 | mRNA | 37052899 | 37056971 | 37052899 | ID=MS.gene068144.t1;Parent=MS.gene068144 |
| chr1.4 | exon | 37056879 | 37056971 | 37056879 | ID=MS.gene068144.t1.exon1;Parent=MS.gene068144.t1 |
| chr1.4 | CDS | 37056879 | 37056971 | 37056879 | ID=cds.MS.gene068144.t1;Parent=MS.gene068144.t1 |
| chr1.4 | exon | 37056579 | 37056780 | 37056579 | ID=MS.gene068144.t1.exon2;Parent=MS.gene068144.t1 |
| chr1.4 | CDS | 37056579 | 37056780 | 37056579 | ID=cds.MS.gene068144.t1;Parent=MS.gene068144.t1 |
| chr1.4 | exon | 37056295 | 37056428 | 37056295 | ID=MS.gene068144.t1.exon3;Parent=MS.gene068144.t1 |
| chr1.4 | CDS | 37056295 | 37056428 | 37056295 | ID=cds.MS.gene068144.t1;Parent=MS.gene068144.t1 |
| chr1.4 | exon | 37055934 | 37056207 | 37055934 | ID=MS.gene068144.t1.exon4;Parent=MS.gene068144.t1 |
| chr1.4 | CDS | 37055934 | 37056207 | 37055934 | ID=cds.MS.gene068144.t1;Parent=MS.gene068144.t1 |
| chr1.4 | exon | 37055378 | 37055476 | 37055378 | ID=MS.gene068144.t1.exon5;Parent=MS.gene068144.t1 |
| chr1.4 | CDS | 37055378 | 37055476 | 37055378 | ID=cds.MS.gene068144.t1;Parent=MS.gene068144.t1 |
| chr1.4 | exon | 37055188 | 37055286 | 37055188 | ID=MS.gene068144.t1.exon6;Parent=MS.gene068144.t1 |
| chr1.4 | CDS | 37055188 | 37055286 | 37055188 | ID=cds.MS.gene068144.t1;Parent=MS.gene068144.t1 |
| chr1.4 | exon | 37053233 | 37053297 | 37053233 | ID=MS.gene068144.t1.exon7;Parent=MS.gene068144.t1 |
| chr1.4 | CDS | 37053233 | 37053297 | 37053233 | ID=cds.MS.gene068144.t1;Parent=MS.gene068144.t1 |
| chr1.4 | exon | 37052899 | 37053132 | 37052899 | ID=MS.gene068144.t1.exon8;Parent=MS.gene068144.t1 |
| chr1.4 | CDS | 37052899 | 37053132 | 37052899 | ID=cds.MS.gene068144.t1;Parent=MS.gene068144.t1 |
| Gene Sequence |
| Protein sequence |
