AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84056

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84056.t1 MTR_1g035570 81.360 397 62 3 1 385 1 397 0.0 634
MS.gene84056.t1 MTR_1g035490 66.358 324 62 7 104 386 15 332 1.70e-130 378
MS.gene84056.t1 MTR_1g035640 53.776 331 113 5 1 315 1 307 7.68e-112 335
MS.gene84056.t1 MTR_1g035640 44.330 97 29 1 287 383 394 465 1.20e-14 75.5
MS.gene84056.t1 MTR_1g035620 45.283 424 183 14 1 386 1 413 3.07e-107 322
MS.gene84056.t1 MTR_1g050845 45.000 380 143 11 1 339 1 355 8.99e-85 275
MS.gene84056.t1 MTR_6g061070 33.556 450 212 11 14 382 27 470 1.65e-66 218
MS.gene84056.t1 MTR_1g035650 43.269 208 100 3 1 195 1 203 9.73e-49 164
MS.gene84056.t1 MTR_5g044670 31.081 296 177 8 14 287 25 315 8.92e-36 134
MS.gene84056.t1 MTR_7g050560 35.507 276 157 9 14 275 22 290 1.52e-35 132
MS.gene84056.t1 MTR_3g098790 32.746 284 163 8 14 275 22 299 2.04e-33 127
MS.gene84056.t1 MTR_8g103940 28.896 308 172 11 14 286 48 343 7.10e-32 126
MS.gene84056.t1 MTR_7g050590 32.753 287 153 10 21 275 2 280 1.45e-31 121
MS.gene84056.t1 MTR_7g050710 31.270 307 159 11 9 275 13 307 1.30e-30 119
MS.gene84056.t1 MTR_3g061310 28.214 280 179 8 9 273 12 284 1.07e-28 113
MS.gene84056.t1 MTR_7g050580 33.574 277 161 9 14 275 22 290 2.09e-28 113
MS.gene84056.t1 MTR_1g035480 43.151 146 68 5 14 155 26 160 2.13e-28 110
MS.gene84056.t1 MTR_1g108780 29.508 305 174 10 20 292 12 307 1.25e-27 114
MS.gene84056.t1 MTR_7g050720 29.221 308 161 9 14 275 19 315 3.81e-27 110
MS.gene84056.t1 MTR_3g061350 28.873 284 171 10 9 273 12 283 7.07e-27 108
MS.gene84056.t1 MTR_3g061340 28.364 275 174 11 9 273 12 273 2.01e-26 107
MS.gene84056.t1 MTR_3g061320 27.500 280 175 10 9 273 12 278 7.75e-26 105
MS.gene84056.t1 MTR_1g033740 38.255 149 73 5 14 155 31 167 1.00e-25 103
MS.gene84056.t1 MTR_1g035510 31.364 220 122 8 21 218 2 214 4.31e-25 102
MS.gene84056.t1 MTR_3g061370 27.076 277 185 10 9 273 9 280 1.44e-23 99.4
MS.gene84056.t1 MTR_1g035500 37.584 149 86 3 14 156 34 181 3.56e-23 95.9
MS.gene84056.t1 MTR_1g035520 26.667 300 168 6 21 273 88 382 3.97e-23 100
MS.gene84056.t1 MTR_1g035520 44.086 93 48 2 294 382 291 383 1.72e-15 77.8
MS.gene84056.t1 MTR_1g035460 25.000 308 182 7 21 288 2 300 1.29e-22 98.6
MS.gene84056.t1 MTR_6g043890 27.037 270 175 7 13 261 23 291 1.09e-21 95.5
MS.gene84056.t1 MTR_1g035470 38.889 108 63 2 21 126 2 108 4.59e-21 89.0
MS.gene84056.t1 MTR_4g119990 27.181 298 182 12 9 273 15 310 4.04e-20 91.3
MS.gene84056.t1 MTR_3g061290 30.952 168 110 3 9 172 12 177 1.30e-19 86.7
MS.gene84056.t1 MTR_3g061330 33.333 123 78 2 9 127 12 134 1.13e-18 85.1
MS.gene84056.t1 MTR_3g005480 26.259 278 142 10 14 275 30 260 2.54e-14 72.8
MS.gene84056.t1 MTR_7g050640 41.441 111 55 4 3 103 5 115 4.42e-14 68.6
MS.gene84056.t1 MTR_4g068320 31.737 167 104 4 7 167 4 166 7.18e-14 73.2
MS.gene84056.t1 MTR_3g005460 25.547 274 161 10 14 273 271 515 3.31e-12 68.2
MS.gene84056.t1 MTR_1g034240 33.333 111 67 3 7 110 5 115 9.19e-12 66.6
MS.gene84056.t1 MTR_3g061220 30.172 116 68 3 9 122 12 116 1.30e-11 61.6
MS.gene84056.t1 MTR_5g070440 22.761 268 174 7 14 276 30 269 1.54e-11 64.7
MS.gene84056.t1 MTR_3g005420 25.461 271 163 8 14 276 298 537 7.27e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84056.t1 AT3G18990 25.369 339 183 9 7 278 4 339 5.35e-21 94.0
MS.gene84056.t1 AT3G18990 24.633 341 177 8 7 275 4 336 6.66e-21 93.2
MS.gene84056.t1 AT4G01580 32.576 132 80 3 14 138 39 168 3.50e-11 62.4

Find 77 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACACCATTTGGAAATTTA+AGG 0.138162 1.3:+32832160 None:intergenic
GTGTTCAACAAGAAATATTT+TGG 0.149501 1.3:-32832143 MS.gene84056:CDS
CTTTGGGATTGCTTCGTTTC+CGG 0.165431 1.3:+32831014 None:intergenic
TTTGCAAAGTCTTTCAAATA+TGG 0.208675 1.3:-32832075 MS.gene84056:CDS
TTAAAACCTTGTAGTTTCTT+TGG 0.217113 1.3:+32830997 None:intergenic
TATTTCTCCACATATTTCTT+TGG 0.248757 1.3:+32832210 None:intergenic
ATTGTCCTTTGAGCTTTCTT+TGG 0.254871 1.3:+32831853 None:intergenic
TTTGGAAATTTAAGGAATAT+AGG 0.269064 1.3:+32832168 None:intergenic
TTAATGGAACTGTAACAATA+AGG 0.273629 1.3:-32831215 MS.gene84056:CDS
TTCATCAACTGATTTGATAT+TGG 0.273749 1.3:+32831969 None:intergenic
AGAAATATGTGGAGAAATAT+TGG 0.281812 1.3:-32832206 MS.gene84056:CDS
TTGGAAATTTAAGGAATATA+GGG 0.293892 1.3:+32832169 None:intergenic
GCATAACACATTCAAGGTTT+TGG 0.294441 1.3:-32830548 MS.gene84056:CDS
AAATATTGTGGAGTTGAAAA+TGG 0.298192 1.3:-32830376 MS.gene84056:CDS
AAAGCTCAAAGGACAATAAA+TGG 0.303877 1.3:-32831847 MS.gene84056:CDS
CTCTTAACTTTCAAATTCAT+TGG 0.314459 1.3:-32832048 MS.gene84056:CDS
TAAAACCTTGTAGTTTCTTT+GGG 0.320506 1.3:+32830998 None:intergenic
GTGGTGGTTGGAAAATATTC+AGG 0.328531 1.3:-32831125 MS.gene84056:CDS
ATTTCTTGTTGAACACCATT+TGG 0.331479 1.3:+32832150 None:intergenic
TTACAAAGAAAGATCTTGTT+TGG 0.332547 1.3:-32831148 MS.gene84056:CDS
CATTAACAGCTTCAGATGTT+TGG 0.351304 1.3:+32831408 None:intergenic
TAATGGAACTGTAACAATAA+GGG 0.353376 1.3:-32831214 MS.gene84056:CDS
GAGGTTAGTTTGAGGTATTA+TGG 0.363534 1.3:-32831171 MS.gene84056:CDS
AATATTATTCTATGAAAATC+TGG 0.366274 1.3:+32832357 None:intergenic
ATAGTGACAGTGAATGAAAA+AGG 0.401426 1.3:+32831045 None:intergenic
ATAGTTTATTTCTAAAGTAT+TGG 0.406626 1.3:+32831993 None:intergenic
AGGATTCGTGGCTGCAAGTT+CGG 0.417358 1.3:-32830315 MS.gene84056:CDS
TACAAAGAAAGATCTTGTTT+GGG 0.433738 1.3:-32831147 MS.gene84056:CDS
AATATTGTGGAGTTGAAAAT+GGG 0.451536 1.3:-32830375 MS.gene84056:CDS
CAAAGTAGCAATGGTGAAGA+AGG 0.457353 1.3:-32831441 MS.gene84056:CDS
AAGTGATGAAGAGAGTGATA+AGG 0.461668 1.3:-32831884 MS.gene84056:CDS
AAAGAATGCAATGTGGAGAT+TGG 0.464528 1.3:-32830270 MS.gene84056:CDS
CGTGGCTGCAAGTTCGGTAA+AGG 0.465915 1.3:-32830309 MS.gene84056:CDS
TGTCATTATAACTTCAAAAG+AGG 0.475259 1.3:+32831379 None:intergenic
TTAACTTTCAAATTCATTGG+TGG 0.475675 1.3:-32832045 MS.gene84056:CDS
TGGAGAGTAATGGTGACATT+TGG 0.482358 1.3:-32832119 MS.gene84056:CDS
GGTGCTGAAGCCACTGAAGA+AGG 0.489506 1.3:-32831946 MS.gene84056:CDS
GATGAAGCATAACACATTCA+AGG 0.490908 1.3:-32830554 MS.gene84056:CDS
CCAAAGGAATTTATGAAAAG+AGG 0.492978 1.3:-32830408 MS.gene84056:CDS
ATATTCCTTAAATTTCCAAA+TGG 0.494489 1.3:-32832165 MS.gene84056:CDS
TACTGTACAGAAGGTCATGA+TGG 0.501012 1.3:-32830577 MS.gene84056:intron
GATCTTGTTTGGGTGGTGGT+TGG 0.501988 1.3:-32831137 MS.gene84056:CDS
GTCATTATAACTTCAAAAGA+GGG 0.507540 1.3:+32831380 None:intergenic
GGAGTGTGGAGGTTAGTTTG+AGG 0.513468 1.3:-32831179 MS.gene84056:CDS
ACTTTCTTTACCTTCTTCAG+TGG 0.514754 1.3:+32831936 None:intergenic
GATGAGGAAGCCACTGAAGA+AGG 0.517797 1.3:-32831913 MS.gene84056:CDS
ACTTTCTTCACCTTCTTCAG+TGG 0.520796 1.3:+32831903 None:intergenic
AGGATGTCATGGAAATATTG+TGG 0.534496 1.3:-32830388 MS.gene84056:CDS
TTTATGAAAAGAGGATGTCA+TGG 0.534842 1.3:-32830399 MS.gene84056:CDS
CAATAAGGGTTGGTAATGAA+AGG 0.535875 1.3:-32831200 MS.gene84056:CDS
AATGGCAAGAGAAAATTCTC+AGG 0.536390 1.3:-32831829 MS.gene84056:intron
TAAAAGTGAATTATTATGAG+AGG 0.536408 1.3:-32830335 MS.gene84056:CDS
AATATCAAATCAGTTGATGA+AGG 0.540855 1.3:-32831967 MS.gene84056:CDS
AATTATTATGAGAGGATTCG+TGG 0.546047 1.3:-32830327 MS.gene84056:CDS
AAAGAAAGATCTTGTTTGGG+TGG 0.548816 1.3:-32831144 MS.gene84056:CDS
GCTGCAAGTTCGGTAAAGGT+TGG 0.563561 1.3:-32830305 MS.gene84056:CDS
GAAAGATCTTGTTTGGGTGG+TGG 0.568994 1.3:-32831141 MS.gene84056:CDS
TTTGGTGAAGAACACAGCCC+CGG 0.573521 1.3:-32830530 MS.gene84056:intron
TGAAAATGGGGAGGAAGCCA+TGG 0.575061 1.3:-32830362 MS.gene84056:CDS
GTATTTGCAGAGTGTACCAA+AGG 0.583029 1.3:-32830424 MS.gene84056:intron
ACTGTCACTATTACTCGTGC+CGG 0.586569 1.3:-32831033 MS.gene84056:CDS
ACTTACAAAGAAATAGCCAT+TGG 0.588354 1.3:+32831346 None:intergenic
AGGTAGTAACAAAGTAGCAA+TGG 0.593594 1.3:-32831450 MS.gene84056:CDS
GAGGGTTCCAAAGAAATATG+TGG 0.594786 1.3:-32832217 MS.gene84056:CDS
GCAATCCCAAAGAAACTACA+AGG 0.598347 1.3:-32831003 MS.gene84056:intron
AGAAGGTAAAGAAAGTGATG+AGG 0.601536 1.3:-32831929 MS.gene84056:CDS
TGGTGGTTGGAAAATATTCA+GGG 0.603185 1.3:-32831124 MS.gene84056:CDS
ATGACACAATCTTACACCAA+TGG 0.609025 1.3:-32831362 MS.gene84056:CDS
GGTTGGTAATGAAAGGAGTG+TGG 0.615653 1.3:-32831193 MS.gene84056:CDS
TATGTGGAGAAATATTGGAA+AGG 0.617787 1.3:-32832201 MS.gene84056:CDS
GGAACTGTAACAATAAGGGT+TGG 0.627229 1.3:-32831210 MS.gene84056:CDS
TTGTGGAGTTGAAAATGGGG+AGG 0.632079 1.3:-32830371 MS.gene84056:CDS
TGGTAATGAAAGGAGTGTGG+AGG 0.642373 1.3:-32831190 MS.gene84056:CDS
AAATGCCAAAGAAAGCTCAA+AGG 0.663329 1.3:-32831858 MS.gene84056:CDS
ACTGTACAGAAGGTCATGAT+GGG 0.685690 1.3:-32830576 MS.gene84056:intron
ATATTGTGGAGTTGAAAATG+GGG 0.692849 1.3:-32830374 MS.gene84056:CDS
ATTCATGAAAGAATGCAATG+TGG 0.698838 1.3:-32830277 MS.gene84056:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATATAATATATAGTTAATT+AGG + chr1.3:32831867-32831886 None:intergenic 10.0%
!! CATTTATGATAAAAAAAAAT+TGG - chr1.3:32831004-32831023 MS.gene84056:CDS 10.0%
!!! ATGAATAATTTATAAGTTTT+TGG - chr1.3:32831773-32831792 MS.gene84056:intron 10.0%
!! AATATTATTCTATGAAAATC+TGG + chr1.3:32830215-32830234 None:intergenic 15.0%
!! ATTATATCTTTAAACTTTAC+AGG - chr1.3:32831099-32831118 MS.gene84056:CDS 15.0%
!!! AAATATGTTATTTTTTTGGA+AGG - chr1.3:32830962-32830981 MS.gene84056:intron 15.0%
!!! AGTTTTTAATAGTTAGTAAT+TGG - chr1.3:32831800-32831819 MS.gene84056:intron 15.0%
!!! ATAGTTTATTTCTAAAGTAT+TGG + chr1.3:32830579-32830598 None:intergenic 15.0%
!!! CAAATATCTCTAAATTTTTT+GGG - chr1.3:32831928-32831947 MS.gene84056:CDS 15.0%
!!! TATTTTAAGGTTAAGATATT+TGG - chr1.3:32830551-32830570 MS.gene84056:CDS 15.0%
!!! TCAAATATCTCTAAATTTTT+TGG - chr1.3:32831927-32831946 MS.gene84056:CDS 15.0%
!!! TTTTATTTAATTAATCCTAC+CGG + chr1.3:32832061-32832080 None:intergenic 15.0%
!! AGAAATCATACATTAACAAT+AGG + chr1.3:32830316-32830335 None:intergenic 20.0%
!! ATATTCCTTAAATTTCCAAA+TGG - chr1.3:32830404-32830423 MS.gene84056:CDS 20.0%
!! GAAATCATACATTAACAATA+GGG + chr1.3:32830315-32830334 None:intergenic 20.0%
!! TAAAAGTGAATTATTATGAG+AGG - chr1.3:32832234-32832253 MS.gene84056:intron 20.0%
!! TTGGAAATTTAAGGAATATA+GGG + chr1.3:32830403-32830422 None:intergenic 20.0%
!! TTTATTTAATTAATCCTACC+GGG + chr1.3:32832060-32832079 None:intergenic 20.0%
!! TTTGGAAATTTAAGGAATAT+AGG + chr1.3:32830404-32830423 None:intergenic 20.0%
!!! ACATTTGGTTTCAAAAAAAT+TGG - chr1.3:32830465-32830484 MS.gene84056:intron 20.0%
!!! CATTTGGTTTCAAAAAAATT+GGG - chr1.3:32830466-32830485 MS.gene84056:intron 20.0%
!!! GAAAACTTGAAAGATTTTAA+TGG - chr1.3:32831338-32831357 MS.gene84056:intron 20.0%
!!! TGTTCAACAAGAAATATTTT+GGG - chr1.3:32830427-32830446 MS.gene84056:intron 20.0%
! AAATATTGTGGAGTTGAAAA+TGG - chr1.3:32832193-32832212 MS.gene84056:CDS 25.0%
! AATATTGTGGAGTTGAAAAT+GGG - chr1.3:32832194-32832213 MS.gene84056:CDS 25.0%
! AGAAATATGTGGAGAAATAT+TGG - chr1.3:32830363-32830382 MS.gene84056:CDS 25.0%
! CTCTTAACTTTCAAATTCAT+TGG - chr1.3:32830521-32830540 MS.gene84056:intron 25.0%
! GTCATTATAACTTCAAAAGA+GGG + chr1.3:32831192-32831211 None:intergenic 25.0%
! TAAAACCTTGTAGTTTCTTT+GGG + chr1.3:32831574-32831593 None:intergenic 25.0%
! TAATGGAACTGTAACAATAA+GGG - chr1.3:32831355-32831374 MS.gene84056:CDS 25.0%
! TATTTCTCCACATATTTCTT+TGG + chr1.3:32830362-32830381 None:intergenic 25.0%
! TGTCATTATAACTTCAAAAG+AGG + chr1.3:32831193-32831212 None:intergenic 25.0%
! TTAAAACCTTGTAGTTTCTT+TGG + chr1.3:32831575-32831594 None:intergenic 25.0%
! TTAACTTTCAAATTCATTGG+TGG - chr1.3:32830524-32830543 MS.gene84056:intron 25.0%
! TTAATGGAACTGTAACAATA+AGG - chr1.3:32831354-32831373 MS.gene84056:CDS 25.0%
! TTACAAAGAAAGATCTTGTT+TGG - chr1.3:32831421-32831440 MS.gene84056:CDS 25.0%
! TTATTTAATTAATCCTACCG+GGG + chr1.3:32832059-32832078 None:intergenic 25.0%
! TTTGCAAAGTCTTTCAAATA+TGG - chr1.3:32830494-32830513 MS.gene84056:intron 25.0%
!! GTGTTCAACAAGAAATATTT+TGG - chr1.3:32830426-32830445 MS.gene84056:intron 25.0%
!! TACAAAGAAAGATCTTGTTT+GGG - chr1.3:32831422-32831441 MS.gene84056:CDS 25.0%
!!! AACTTTTAAGAGTTATTCCA+TGG - chr1.3:32830839-32830858 MS.gene84056:intron 25.0%
!!! AATATCAAATCAGTTGATGA+AGG - chr1.3:32830602-32830621 MS.gene84056:intron 25.0%
!!! TTCATCAACTGATTTGATAT+TGG + chr1.3:32830603-32830622 None:intergenic 25.0%
AAAGCTCAAAGGACAATAAA+TGG - chr1.3:32830722-32830741 MS.gene84056:intron 30.0%
AACTGAATCCTACATAAGTT+AGG + chr1.3:32831826-32831845 None:intergenic 30.0%
AATTATTATGAGAGGATTCG+TGG - chr1.3:32832242-32832261 MS.gene84056:intron 30.0%
ACTTACAAAGAAATAGCCAT+TGG + chr1.3:32831226-32831245 None:intergenic 30.0%
ATAGTGACAGTGAATGAAAA+AGG + chr1.3:32831527-32831546 None:intergenic 30.0%
ATATTGTGGAGTTGAAAATG+GGG - chr1.3:32832195-32832214 MS.gene84056:CDS 30.0%
ATTCATGAAAGAATGCAATG+TGG - chr1.3:32832292-32832311 MS.gene84056:intron 30.0%
ATTTCTTGTTGAACACCATT+TGG + chr1.3:32830422-32830441 None:intergenic 30.0%
CCAAAGGAATTTATGAAAAG+AGG - chr1.3:32832161-32832180 MS.gene84056:CDS 30.0%
GAAAAAATCACAACAAACCA+TGG + chr1.3:32830859-32830878 None:intergenic 30.0%
GAAAATTCTCAGGTAAGTTT+AGG - chr1.3:32830750-32830769 MS.gene84056:intron 30.0%
GAACACCATTTGGAAATTTA+AGG + chr1.3:32830412-32830431 None:intergenic 30.0%
TATGTGGAGAAATATTGGAA+AGG - chr1.3:32830368-32830387 MS.gene84056:CDS 30.0%
TCTGAAAGCTTGTAAATCTA+AGG - chr1.3:32830879-32830898 MS.gene84056:intron 30.0%
TTTATGAAAAGAGGATGTCA+TGG - chr1.3:32832170-32832189 MS.gene84056:CDS 30.0%
! AGTGTCTTGAAAATCGTTTT+TGG - chr1.3:32830912-32830931 MS.gene84056:intron 30.0%
! CCTCTTTTCATAAATTCCTT+TGG + chr1.3:32832164-32832183 None:intergenic 30.0%
! TAAACCATGATTTGAAACAG+TGG - chr1.3:32831294-32831313 MS.gene84056:intron 30.0%
! TTTTCTCTTGAAAACTCACT+TGG + chr1.3:32831323-32831342 None:intergenic 30.0%
!! CATTGGTGGATCATATTTTA+AGG - chr1.3:32830538-32830557 MS.gene84056:CDS 30.0%
!! TAATTCACTTTTACGAACCA+TGG + chr1.3:32832227-32832246 None:intergenic 30.0%
!! TCAACAAGAAATATTTTGGG+TGG - chr1.3:32830430-32830449 MS.gene84056:intron 30.0%
AAAGAATGCAATGTGGAGAT+TGG - chr1.3:32832299-32832318 MS.gene84056:intron 35.0%
AAATGCCAAAGAAAGCTCAA+AGG - chr1.3:32830711-32830730 MS.gene84056:intron 35.0%
AAGTGATGAAGAGAGTGATA+AGG - chr1.3:32830685-32830704 MS.gene84056:intron 35.0%
AATGGCAAGAGAAAATTCTC+AGG - chr1.3:32830740-32830759 MS.gene84056:intron 35.0%
ACTTTCTTTACCTTCTTCAG+TGG + chr1.3:32830636-32830655 None:intergenic 35.0%
AGAAGGTAAAGAAAGTGATG+AGG - chr1.3:32830640-32830659 MS.gene84056:intron 35.0%
AGGATGTCATGGAAATATTG+TGG - chr1.3:32832181-32832200 MS.gene84056:CDS 35.0%
AGGTAGTAACAAAGTAGCAA+TGG - chr1.3:32831119-32831138 MS.gene84056:CDS 35.0%
ATGACACAATCTTACACCAA+TGG - chr1.3:32831207-32831226 MS.gene84056:CDS 35.0%
ATTGTCCTTTGAGCTTTCTT+TGG + chr1.3:32830719-32830738 None:intergenic 35.0%
CATTAACAGCTTCAGATGTT+TGG + chr1.3:32831164-32831183 None:intergenic 35.0%
CTGAATTTCTTTGTTGCAGA+GGG - chr1.3:32830334-32830353 MS.gene84056:CDS 35.0%
GATGAAGCATAACACATTCA+AGG - chr1.3:32832015-32832034 MS.gene84056:CDS 35.0%
GTAACCACTGTTTCAAATCA+TGG + chr1.3:32831301-32831320 None:intergenic 35.0%
TCTGAATTTCTTTGTTGCAG+AGG - chr1.3:32830333-32830352 MS.gene84056:CDS 35.0%
TGGTGGTTGGAAAATATTCA+GGG - chr1.3:32831445-32831464 MS.gene84056:CDS 35.0%
TTATGCTTGTACTGTACAGA+AGG - chr1.3:32831983-32832002 MS.gene84056:CDS 35.0%
! AAAGAAAGATCTTGTTTGGG+TGG - chr1.3:32831425-32831444 MS.gene84056:CDS 35.0%
! GCATAACACATTCAAGGTTT+TGG - chr1.3:32832021-32832040 MS.gene84056:CDS 35.0%
! GTAATTGGCCTAACTTATGT+AGG - chr1.3:32831815-32831834 MS.gene84056:intron 35.0%
!! ATATTTTGGGTGGAGAGTAA+TGG - chr1.3:32830440-32830459 MS.gene84056:intron 35.0%
!! CAATAAGGGTTGGTAATGAA+AGG - chr1.3:32831369-32831388 MS.gene84056:CDS 35.0%
!! GAGGTTAGTTTGAGGTATTA+TGG - chr1.3:32831398-32831417 MS.gene84056:CDS 35.0%
ACTGTACAGAAGGTCATGAT+GGG - chr1.3:32831993-32832012 MS.gene84056:CDS 40.0%
ACTTTCTTCACCTTCTTCAG+TGG + chr1.3:32830669-32830688 None:intergenic 40.0%
CAAAGTAGCAATGGTGAAGA+AGG - chr1.3:32831128-32831147 MS.gene84056:CDS 40.0%
GAGGGTTCCAAAGAAATATG+TGG - chr1.3:32830352-32830371 MS.gene84056:CDS 40.0%
GCAATCCCAAAGAAACTACA+AGG - chr1.3:32831566-32831585 MS.gene84056:intron 40.0%
GGAACTGTAACAATAAGGGT+TGG - chr1.3:32831359-32831378 MS.gene84056:CDS 40.0%
GTATTTGCAGAGTGTACCAA+AGG - chr1.3:32832145-32832164 MS.gene84056:CDS 40.0%
GTGGTGGTTGGAAAATATTC+AGG - chr1.3:32831444-32831463 MS.gene84056:CDS 40.0%
TACTGTACAGAAGGTCATGA+TGG - chr1.3:32831992-32832011 MS.gene84056:CDS 40.0%
TGGAGAGTAATGGTGACATT+TGG - chr1.3:32830450-32830469 MS.gene84056:intron 40.0%
ACTGTCACTATTACTCGTGC+CGG - chr1.3:32831536-32831555 MS.gene84056:intron 45.0%
TTGTGGAGTTGAAAATGGGG+AGG - chr1.3:32832198-32832217 MS.gene84056:CDS 45.0%
! GAAAGATCTTGTTTGGGTGG+TGG - chr1.3:32831428-32831447 MS.gene84056:CDS 45.0%
! TGGTAATGAAAGGAGTGTGG+AGG - chr1.3:32831379-32831398 MS.gene84056:CDS 45.0%
!! CTTTGGGATTGCTTCGTTTC+CGG + chr1.3:32831558-32831577 None:intergenic 45.0%
!! GGTTGGTAATGAAAGGAGTG+TGG - chr1.3:32831376-32831395 MS.gene84056:CDS 45.0%
!!! AATTAAAAAAGTTTTTAATT+TGG - chr1.3:32831739-32831758 MS.gene84056:intron 5.0%
!!! ATAAAAATATGTTATTTTTT+TGG - chr1.3:32830958-32830977 MS.gene84056:intron 5.0%
AGGATTCGTGGCTGCAAGTT+CGG - chr1.3:32832254-32832273 MS.gene84056:intron 50.0%
GATGAGGAAGCCACTGAAGA+AGG - chr1.3:32830656-32830675 MS.gene84056:intron 50.0%
GCTGCAAGTTCGGTAAAGGT+TGG - chr1.3:32832264-32832283 MS.gene84056:intron 50.0%
TGAAAATGGGGAGGAAGCCA+TGG - chr1.3:32832207-32832226 MS.gene84056:CDS 50.0%
TTTGGTGAAGAACACAGCCC+CGG - chr1.3:32832039-32832058 MS.gene84056:CDS 50.0%
! GATCTTGTTTGGGTGGTGGT+TGG - chr1.3:32831432-32831451 MS.gene84056:CDS 50.0%
!! GGAGTGTGGAGGTTAGTTTG+AGG - chr1.3:32831390-32831409 MS.gene84056:CDS 50.0%
CGTGGCTGCAAGTTCGGTAA+AGG - chr1.3:32832260-32832279 MS.gene84056:intron 55.0%
! GGTGCTGAAGCCACTGAAGA+AGG - chr1.3:32830623-32830642 MS.gene84056:intron 55.0%
GTGAAGAACACAGCCCCGGT+AGG - chr1.3:32832043-32832062 MS.gene84056:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 32830194 32832397 32830194 ID=MS.gene84056
chr1.3 mRNA 32830194 32832397 32830194 ID=MS.gene84056.t1;Parent=MS.gene84056
chr1.3 exon 32832341 32832397 32832341 ID=MS.gene84056.t1.exon1;Parent=MS.gene84056.t1
chr1.3 CDS 32832341 32832397 32832341 ID=cds.MS.gene84056.t1;Parent=MS.gene84056.t1
chr1.3 exon 32831830 32832238 32831830 ID=MS.gene84056.t1.exon2;Parent=MS.gene84056.t1
chr1.3 CDS 32831830 32832238 32831830 ID=cds.MS.gene84056.t1;Parent=MS.gene84056.t1
chr1.3 exon 32831352 32831470 32831352 ID=MS.gene84056.t1.exon3;Parent=MS.gene84056.t1
chr1.3 CDS 32831352 32831470 32831352 ID=cds.MS.gene84056.t1;Parent=MS.gene84056.t1
chr1.3 exon 32831004 32831277 32831004 ID=MS.gene84056.t1.exon4;Parent=MS.gene84056.t1
chr1.3 CDS 32831004 32831277 32831004 ID=cds.MS.gene84056.t1;Parent=MS.gene84056.t1
chr1.3 exon 32830531 32830589 32830531 ID=MS.gene84056.t1.exon5;Parent=MS.gene84056.t1
chr1.3 CDS 32830531 32830589 32830531 ID=cds.MS.gene84056.t1;Parent=MS.gene84056.t1
chr1.3 exon 32830194 32830436 32830194 ID=MS.gene84056.t1.exon6;Parent=MS.gene84056.t1
chr1.3 CDS 32830194 32830436 32830194 ID=cds.MS.gene84056.t1;Parent=MS.gene84056.t1
Gene Sequence

>MS.gene84056

ATGTCATTTCAACATGTTCCAGATTTTCATAGAATAATATTGCAAGATAAGAAACTTGTAAGTCTATTACAAATAATTATATTGCATATTTTATATTATGTTTCATTTATGCTGTAAACCCTATTGTTAATGTATGATTTCTGAATTTCTTTGTTGCAGAGGGTTCCAAAGAAATATGTGGAGAAATATTGGAAAGGAATATCAAACCCTATATTCCTTAAATTTCCAAATGGTGTTCAACAAGAAATATTTTGGGTGGAGAGTAATGGTGACATTTGGTTTCAAAAAAATTGGGAAAGTTTTGCAAAGTCTTTCAAATATGGATATCTCTTAACTTTCAAATTCATTGGTGGATCATATTTTAAGGTTAAGATATTTGGTGCCAATACTTTAGAAATAAACTATGCCAATATCAAATCAGTTGATGAAGGTGCTGAAGCCACTGAAGAAGGTAAAGAAAGTGATGAGGAAGCCACTGAAGAAGGTGAAGAAAGTGATGAAGAGAGTGATAAGGTTGAAATGCCAAAGAAAGCTCAAAGGACAATAAATGGCAAGAGAAAATTCTCAGGTAAGTTTAGGCTTGTCTGTTACTCTATTTATTTTTTTAAACAAAAATCATTAGTTTTTATAGAAATAATTGCTTTTAACTTTTAAGAGTTATTCCATGGTTTGTTGTGATTTTTTCTCTGAAAGCTTGTAAATCTAAGGAAGAAAAAAAAGTGTCTTGAAAATCGTTTTTGGAAGCATTGTTAGATACTTTTTCTATAAAAATATGTTATTTTTTTGGAAGGAAAAATATGTGATTTTTATCATTTATGATAAAAAAAAATTGGTTTTTTAAAATCGTTTGAAAATAATCTCTAAATCAAATGTATGATAAATAGTTAATGTAAACAAAATAGATCATTATATCTTTAAACTTTACAGGTAGTAACAAAGTAGCAATGGTGAAGAAGGCTAGAAAATACCAAACATCTGAAGCTGTTAATGAGAATCCCTCTTTTGAAGTTATAATGACACAATCTTACACCAATGGCTATTTCTTTGTAAGTTTTCTATACAAAGTATCTAATAAGTTTAGCTTTAATTAATATCTCTAATAAACCATGATTTGAAACAGTGGTTACCAAGTGAGTTTTCAAGAGAAAACTTGAAAGATTTTAATGGAACTGTAACAATAAGGGTTGGTAATGAAAGGAGTGTGGAGGTTAGTTTGAGGTATTATGGTTACAAAGAAAGATCTTGTTTGGGTGGTGGTTGGAAAATATTCAGGGAAAAATATAATTTGCAAGTTGACGATGTTTGTAAATTTGAGATGATTCGACAGAGACCTTTTTCATTCACTGTCACTATTACTCGTGCCGGAAACGAAGCAATCCCAAAGAAACTACAAGGTTTTAATTCTTTCTTTTTCTTTTATTTGCTTTTTTGTATGTTATCATGTTTTTATTTGATAAATTATATTATTCTAACTTTTTTAAAGTTTATAGATTTTATTATTGTAAATGACTCTTATATATATGTAATTTTTAAAATTGTTCTGAGAATTAAAAAAGTTTTTAATTTGGTCTGCAAACATATGAATAATTTATAAGTTTTTGGACTAAGTTTTTAATAGTTAGTAATTGGCCTAACTTATGTAGGATTCAGTTTATTTTTTTAGTTTAAAACCTAATTAACTATATATTATATGTTTAAGTTCATACTTGAAATTTTTTAGCTCAAAAGTATATTCAAATATCTCTAAATTTTTTGGGTGTTATAAAATTTAGACGATATCATTTTGTATTTATGCTTGTACTGTACAGAAGGTCATGATGGGATGAAGCATAACACATTCAAGGTTTTGGTGAAGAACACAGCCCCGGTAGGATTAATTAAATAAAATATAGTTACATATATAGATAGAAATGTTAGAACTACAAAAAATAAATAAATGATATTTTTGTTTGTATTTGCAGAGTGTACCAAAGGAATTTATGAAAAGAGGATGTCATGGAAATATTGTGGAGTTGAAAATGGGGAGGAAGCCATGGTTCGTAAAAGTGAATTATTATGAGAGGATTCGTGGCTGCAAGTTCGGTAAAGGTTGGACAAAATTCATGAAAGAATGCAATGTGGAGATTGGAGATACTTGTCTCTTTAAGTTGATTGATGAGAGAAAATTTGTGTTTGATGTTTCAATTGTTGCAAGAAACCATTAG
Protein sequence

>MS.gene84056.t1

MSFQHVPDFHRIILQDKKLRVPKKYVEKYWKGISNPIFLKFPNGVQQEIFWVESNGDIWFQKNWESFAKSFKYGYLLTFKFIGGSYFKVKIFGANTLEINYANIKSVDEGAEATEEGKESDEEATEEGEESDEESDKVEMPKKAQRTINGKRKFSGSNKVAMVKKARKYQTSEAVNENPSFEVIMTQSYTNGYFFWLPSEFSRENLKDFNGTVTIRVGNERSVEVSLRYYGYKERSCLGGGWKIFREKYNLQVDDVCKFEMIRQRPFSFTVTITRAGNEAIPKKLQEGHDGMKHNTFKVLVKNTAPSVPKEFMKRGCHGNIVELKMGRKPWFVKVNYYERIRGCKFGKGWTKFMKECNVEIGDTCLFKLIDERKFVFDVSIVARNH