AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene040683

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040683.t1 MTR_1g035620 87.335 379 42 6 1 377 1 375 0.0 662
MS.gene040683.t1 MTR_1g050845 86.544 379 33 3 1 377 1 363 0.0 648
MS.gene040683.t1 MTR_1g035640 48.773 326 138 8 1 307 1 316 5.25e-94 289
MS.gene040683.t1 MTR_1g035570 43.577 397 163 14 1 375 1 358 1.73e-89 276
MS.gene040683.t1 MTR_1g035650 58.294 211 65 5 1 196 1 203 2.66e-69 217
MS.gene040683.t1 MTR_6g061070 32.126 414 224 10 17 377 26 435 1.61e-55 189
MS.gene040683.t1 MTR_1g035490 41.057 246 125 9 139 375 58 292 8.05e-43 152
MS.gene040683.t1 MTR_5g044670 29.568 301 184 8 3 281 10 304 2.69e-33 127
MS.gene040683.t1 MTR_7g050710 31.633 294 178 7 6 276 10 303 3.27e-33 126
MS.gene040683.t1 MTR_3g098790 32.192 292 171 11 6 276 10 295 1.73e-31 122
MS.gene040683.t1 MTR_1g033740 42.405 158 78 5 9 155 22 177 1.40e-30 116
MS.gene040683.t1 MTR_7g050580 30.822 292 166 9 6 276 10 286 1.85e-29 116
MS.gene040683.t1 MTR_7g050560 28.912 294 169 8 6 276 10 286 4.50e-28 112
MS.gene040683.t1 MTR_7g050720 29.355 310 173 9 6 277 7 308 2.04e-27 110
MS.gene040683.t1 MTR_1g035480 36.310 168 92 4 2 158 3 166 2.56e-26 104
MS.gene040683.t1 MTR_1g035500 37.654 162 88 5 5 158 21 177 7.78e-26 103
MS.gene040683.t1 MTR_1g035510 38.571 140 76 4 25 155 2 140 1.61e-24 100
MS.gene040683.t1 MTR_1g035510 49.057 106 46 1 260 365 125 222 2.25e-21 92.0
MS.gene040683.t1 MTR_8g103940 26.518 313 175 10 2 276 32 327 6.60e-24 103
MS.gene040683.t1 MTR_1g035470 43.925 107 59 1 25 131 2 107 2.83e-23 94.7
MS.gene040683.t1 MTR_6g043890 27.368 285 172 9 9 266 15 291 9.33e-23 98.2
MS.gene040683.t1 MTR_7g050590 26.644 289 161 6 25 276 2 276 1.13e-22 97.4
MS.gene040683.t1 MTR_1g035520 27.852 298 166 9 25 277 88 381 8.76e-22 96.3
MS.gene040683.t1 MTR_1g108780 25.685 292 161 10 24 276 12 286 7.04e-21 94.4
MS.gene040683.t1 MTR_3g061320 24.382 283 187 8 6 276 9 276 7.15e-20 89.0
MS.gene040683.t1 MTR_3g061310 24.221 289 186 11 6 276 9 282 5.51e-19 86.7
MS.gene040683.t1 MTR_3g061370 25.704 284 181 9 9 276 9 278 8.95e-19 85.9
MS.gene040683.t1 MTR_3g061340 26.132 287 172 8 6 276 9 271 1.33e-18 85.5
MS.gene040683.t1 MTR_4g119990 24.590 305 182 10 9 276 15 308 2.88e-18 85.9
MS.gene040683.t1 MTR_3g061350 24.739 287 186 8 6 276 9 281 4.62e-18 84.0
MS.gene040683.t1 MTR_3g061290 31.214 173 107 5 6 174 9 173 8.47e-18 81.6
MS.gene040683.t1 MTR_3g061330 34.646 127 72 3 6 130 9 126 1.33e-17 82.0
MS.gene040683.t1 MTR_1g035460 24.242 297 165 10 25 276 2 283 2.30e-17 83.6
MS.gene040683.t1 MTR_7g050640 40.659 91 52 1 8 96 12 102 9.90e-15 70.5
MS.gene040683.t1 MTR_3g005490 24.014 279 173 8 9 284 21 263 2.53e-14 72.8
MS.gene040683.t1 MTR_1g035440 37.000 100 60 2 9 105 15 114 1.21e-13 70.5
MS.gene040683.t1 MTR_5g070440 22.939 279 185 9 9 284 21 272 5.99e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 66 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTGCAGATGACACTTTA+AGG 0.106253 1.2:-34025370 None:intergenic
GTGCTCAAAAGGAAATATTT+TGG 0.171981 1.2:+34024623 MS.gene040683:CDS
AAAATCTTAACCTTAAAATA+TGG 0.178478 1.2:-34024745 None:intergenic
TCTTCTTATGATGATGATAT+TGG 0.197327 1.2:+34025714 MS.gene040683:CDS
ATTATCAGTCAACAGGATTT+AGG 0.220407 1.2:+34026449 MS.gene040683:CDS
ATATTTGGTTTAAGAGAAAT+TGG 0.235240 1.2:+34024662 MS.gene040683:CDS
AGAAATTTGTGGAGAAATAT+TGG 0.241294 1.2:+34024560 MS.gene040683:CDS
TTTGGAAGTCTAAGAATTAC+TGG 0.251892 1.2:-34024598 None:intergenic
GCTTTAGTATTCAAATATTT+AGG 0.260785 1.2:+34024718 MS.gene040683:CDS
AGTCTAAGAATTACTGGATT+TGG 0.299817 1.2:-34024592 None:intergenic
ATATTTCTCCACAAATTTCT+TGG 0.318034 1.2:-34024557 None:intergenic
ACTATCTTCAAGAACTCTTC+TGG 0.329140 1.2:-34024302 None:intergenic
AAGAAGCATAAAGAGCTTCA+TGG 0.346703 1.2:+34026373 MS.gene040683:CDS
CTTCTTATGATGATGATATT+GGG 0.358933 1.2:+34025715 MS.gene040683:CDS
TGGAGCGTGAAGGTGATATT+TGG 0.370024 1.2:+34024647 MS.gene040683:CDS
GGGAAGAGAAGAGGCATTGA+AGG 0.377729 1.2:+34025735 MS.gene040683:CDS
AACATCACCTTCACTTTCAT+AGG 0.384516 1.2:-34025413 None:intergenic
TTTGGCTTGGGTAGTAGTTA+TGG 0.389093 1.2:-34025564 None:intergenic
TCGAAATCATGAACTACATA+AGG 0.397577 1.2:+34024325 MS.gene040683:CDS
TATTTCTCCACAAATTTCTT+GGG 0.405795 1.2:-34024556 None:intergenic
TTTGCAAAGTCTCTAAAAGA+TGG 0.419454 1.2:+34024691 MS.gene040683:CDS
CATTGTGTTTCAGCAGACTT+AGG 0.419879 1.2:+34026191 MS.gene040683:intron
TCATCTGCAAGCATTAGATT+TGG 0.426141 1.2:+34025380 MS.gene040683:CDS
GACAATTCAAGTTCAAAACT+TGG 0.430631 1.2:-34025116 None:intergenic
GTGACATATTATCAGTCAAC+AGG 0.441169 1.2:+34026442 MS.gene040683:CDS
AAATTTGTGGAGTTGACAAA+TGG 0.443876 1.2:+34026397 MS.gene040683:CDS
ACTTCCAAATGGTGCTCAAA+AGG 0.444677 1.2:+34024612 MS.gene040683:CDS
AAATCTTAACCTTAAAATAT+GGG 0.446492 1.2:-34024744 None:intergenic
GAACAATGACAAGGTTATGA+AGG 0.451012 1.2:+34025684 MS.gene040683:intron
AGAGCTTCATGGAAAATTTG+TGG 0.455759 1.2:+34026384 MS.gene040683:CDS
GGCAAATGGCTTCCAACCAC+TGG 0.462531 1.2:-34025471 None:intergenic
AATTTGTGGAGTTGACAAAT+GGG 0.465975 1.2:+34026398 MS.gene040683:CDS
TATTTGGTTTAAGAGAAATT+GGG 0.488183 1.2:+34024663 MS.gene040683:CDS
TTACGCCCATGGCTATACTT+TGG 0.489114 1.2:+34025145 MS.gene040683:CDS
AACAACTAGTACTCTAGTAG+TGG 0.499577 1.2:-34026591 None:intergenic
GAGGGTTCCCAAGAAATTTG+TGG 0.503049 1.2:+34024549 MS.gene040683:intron
CGAAATCATGAACTACATAA+GGG 0.505471 1.2:+34024326 MS.gene040683:CDS
ACAGGATTTAGGTTCTATGC+AGG 0.511151 1.2:+34026460 MS.gene040683:CDS
GAGAGGAGGTATGATTAAGA+AGG 0.513052 1.2:+34025049 MS.gene040683:CDS
TTCATTGATGAAAGTTGTGA+AGG 0.513828 1.2:+34024808 MS.gene040683:CDS
TACTTTGCAGGTAGTAAGAG+AGG 0.516159 1.2:+34025032 MS.gene040683:intron
TTTGTGGAGTTGACAAATGG+GGG 0.523569 1.2:+34026400 MS.gene040683:CDS
GACTTACCAAAGTATAGCCA+TGG 0.533080 1.2:-34025151 None:intergenic
GTAGTTATGGTGAATGAAAG+TGG 0.542900 1.2:-34025551 None:intergenic
GTAATTCTTAGACTTCCAAA+TGG 0.548786 1.2:+34024601 MS.gene040683:CDS
GAGGCATTGAAGGAAGTTCA+AGG 0.552649 1.2:+34025745 MS.gene040683:CDS
ACACGAATCTCGATTGTGAT+CGG 0.556178 1.2:-34026230 None:intergenic
GACAATGTTACTAATAGTGC+TGG 0.567424 1.2:+34024865 MS.gene040683:CDS
ATTATTCAGCAAAATATCAC+AGG 0.568492 1.2:+34024922 MS.gene040683:CDS
ACAACTAGTACTCTAGTAGT+GGG 0.569352 1.2:-34026590 None:intergenic
ATTTGTGGAGTTGACAAATG+GGG 0.577541 1.2:+34026399 MS.gene040683:CDS
TCGTGTGAATTCTACTTACC+CGG 0.579086 1.2:+34026247 MS.gene040683:CDS
GATGATATTGGGAAGAGAAG+AGG 0.582027 1.2:+34025726 MS.gene040683:CDS
TTAGTATTCAAATATTTAGG+TGG 0.586781 1.2:+34024721 MS.gene040683:CDS
TATGCTCTTGAAAAGTCACT+TGG 0.596669 1.2:-34025335 None:intergenic
ATAGTGCTGGCACATCTCAA+AGG 0.602521 1.2:+34024878 MS.gene040683:CDS
CTTGCATTGTGACCAGTGGT+TGG 0.607128 1.2:+34025459 MS.gene040683:CDS
AGTACATACTCGAAAGAACA+TGG 0.608206 1.2:-34025773 None:intergenic
TTGTCACAATCTTACGCCCA+TGG 0.612713 1.2:+34025134 MS.gene040683:CDS
TGTGTTTCAGCAGACTTAGG+TGG 0.616192 1.2:+34026194 MS.gene040683:intron
TTTGCAGGTAGTAAGAGAGG+AGG 0.644007 1.2:+34025035 MS.gene040683:intron
ACTTACCAAAGTATAGCCAT+GGG 0.659069 1.2:-34025150 None:intergenic
ATAACTACTACCCAAGCCAA+AGG 0.667030 1.2:+34025566 MS.gene040683:CDS
AGAACTTGCATTGTGACCAG+TGG 0.689771 1.2:+34025455 MS.gene040683:CDS
CAACTAGTACTCTAGTAGTG+GGG 0.703552 1.2:-34026589 None:intergenic
GAACATGCCTATGAAAGTGA+AGG 0.707159 1.2:+34025406 MS.gene040683:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATTATTTAAAAGTTCA+AGG + chr1.2:34025998-34026017 MS.gene040683:intron 10.0%
!!! AGTTTTTAGATTTTTTAAAT+AGG + chr1.2:34025803-34025822 MS.gene040683:intron 10.0%
!!! GTTTTAAATTATTAGTTATT+TGG + chr1.2:34025227-34025246 MS.gene040683:intron 10.0%
!!! TTTTTTTAAATAAAGTAAGA+AGG - chr1.2:34025597-34025616 None:intergenic 10.0%
!! AAAAAATATAACTTACAAGT+TGG + chr1.2:34025494-34025513 MS.gene040683:CDS 15.0%
!! AAAATCTTAACCTTAAAATA+TGG - chr1.2:34024748-34024767 None:intergenic 15.0%
!! AAATCTTAACCTTAAAATAT+GGG - chr1.2:34024747-34024766 None:intergenic 15.0%
!! ACAATAATCATTTATGAATA+AGG - chr1.2:34024521-34024540 None:intergenic 15.0%
!! ATTATTAACAAATGTATAGT+TGG - chr1.2:34024451-34024470 None:intergenic 15.0%
!! CAATTGATATTAAACAAATT+TGG - chr1.2:34025646-34025665 None:intergenic 15.0%
!!! AACTTGTAAGTTATATTTTT+TGG - chr1.2:34025495-34025514 None:intergenic 15.0%
!!! GAACTAGTTTTTTTTTTAAT+TGG - chr1.2:34026025-34026044 None:intergenic 15.0%
!!! GTTCAAATATTATTTTTTGA+AGG + chr1.2:34025197-34025216 MS.gene040683:intron 15.0%
!!! TATAAGTTACTAGTAAATTT+TGG + chr1.2:34025267-34025286 MS.gene040683:intron 15.0%
!!! TATTTTAAGGTTAAGATTTT+TGG + chr1.2:34024748-34024767 MS.gene040683:CDS 15.0%
!!! TTCATCAATGAATTTTATAT+TGG - chr1.2:34024800-34024819 None:intergenic 15.0%
!!! TTTTTTTTTTTTTACTTTGC+AGG + chr1.2:34025020-34025039 MS.gene040683:intron 15.0%
!! AGGATTAATTATGTTAAATG+TGG + chr1.2:34026272-34026291 MS.gene040683:intron 20.0%
!! GCTTTAGTATTCAAATATTT+AGG + chr1.2:34024718-34024737 MS.gene040683:CDS 20.0%
!! TTAACATAATTAATCCTTAC+CGG - chr1.2:34026269-34026288 None:intergenic 20.0%
!! TTAGTATTCAAATATTTAGG+TGG + chr1.2:34024721-34024740 MS.gene040683:CDS 20.0%
!!! AAGTTATATTTTTTGGCAAA+TGG - chr1.2:34025488-34025507 None:intergenic 20.0%
!!! ATAACTAGTTTTCTAACATT+AGG + chr1.2:34025873-34025892 MS.gene040683:intron 20.0%
!!! ATATTTGGTTTAAGAGAAAT+TGG + chr1.2:34024662-34024681 MS.gene040683:CDS 20.0%
!!! ATCTATTTTAGCCATATATA+AGG - chr1.2:34024996-34025015 None:intergenic 20.0%
!!! TATTTGGTTTAAGAGAAATT+GGG + chr1.2:34024663-34024682 MS.gene040683:CDS 20.0%
!!! TTGTTATTCTACCTTATATA+TGG + chr1.2:34024982-34025001 MS.gene040683:intron 20.0%
! AGAAATTTGTGGAGAAATAT+TGG + chr1.2:34024560-34024579 MS.gene040683:CDS 25.0%
! ATATTTCTCCACAAATTTCT+TGG - chr1.2:34024560-34024579 None:intergenic 25.0%
! ATTATTCAGCAAAATATCAC+AGG + chr1.2:34024922-34024941 MS.gene040683:CDS 25.0%
! ATTTATAATTTAAGAGGGAG+AGG - chr1.2:34025984-34026003 None:intergenic 25.0%
! TAAACCTTGAATTGAAATAG+AGG + chr1.2:34025309-34025328 MS.gene040683:intron 25.0%
! TAACATAATTAATCCTTACC+GGG - chr1.2:34026268-34026287 None:intergenic 25.0%
! TATTTCTCCACAAATTTCTT+GGG - chr1.2:34024559-34024578 None:intergenic 25.0%
!! CTTCTTATGATGATGATATT+GGG + chr1.2:34025715-34025734 MS.gene040683:CDS 25.0%
!! GATTGTGATTTGTAATTGAA+AGG - chr1.2:34024429-34024448 None:intergenic 25.0%
!! TCTTCTTATGATGATGATAT+TGG + chr1.2:34025714-34025733 MS.gene040683:CDS 25.0%
!! TGCTCAAAAGGAAATATTTT+GGG + chr1.2:34024624-34024643 MS.gene040683:CDS 25.0%
AAATTTGTGGAGTTGACAAA+TGG + chr1.2:34026397-34026416 MS.gene040683:CDS 30.0%
AAGTAAGAAGGAAAAACCTT+TGG - chr1.2:34025585-34025604 None:intergenic 30.0%
AATTCCTTTGAACAATGACA+AGG + chr1.2:34025675-34025694 MS.gene040683:intron 30.0%
AATTTGTGGAGTTGACAAAT+GGG + chr1.2:34026398-34026417 MS.gene040683:CDS 30.0%
ACATCTCAAAGGAGAAAAAA+CGG + chr1.2:34024889-34024908 MS.gene040683:CDS 30.0%
AGTCTAAGAATTACTGGATT+TGG - chr1.2:34024595-34024614 None:intergenic 30.0%
ATAACCTTGTCATTGTTCAA+AGG - chr1.2:34025682-34025701 None:intergenic 30.0%
ATAAGGATATGTAATGCAAC+AGG - chr1.2:34024504-34024523 None:intergenic 30.0%
ATTATCAGTCAACAGGATTT+AGG + chr1.2:34026449-34026468 MS.gene040683:CDS 30.0%
CGAAATCATGAACTACATAA+GGG + chr1.2:34024326-34024345 MS.gene040683:CDS 30.0%
GAAGATTGCAAATTGAAGAT+TGG + chr1.2:34026499-34026518 MS.gene040683:intron 30.0%
GTAATTCTTAGACTTCCAAA+TGG + chr1.2:34024601-34024620 MS.gene040683:CDS 30.0%
GTATCCTCTATTTCAATTCA+AGG - chr1.2:34025316-34025335 None:intergenic 30.0%
TCGAAATCATGAACTACATA+AGG + chr1.2:34024325-34024344 MS.gene040683:CDS 30.0%
TTCATTGATGAAAGTTGTGA+AGG + chr1.2:34024808-34024827 MS.gene040683:CDS 30.0%
TTGTCATTGTTCAAAGGAAT+TGG - chr1.2:34025676-34025695 None:intergenic 30.0%
TTTGGAAGTCTAAGAATTAC+TGG - chr1.2:34024601-34024620 None:intergenic 30.0%
! GACAATTCAAGTTCAAAACT+TGG - chr1.2:34025119-34025138 None:intergenic 30.0%
! GTGCTCAAAAGGAAATATTT+TGG + chr1.2:34024623-34024642 MS.gene040683:CDS 30.0%
! TTTGCAAAGTCTCTAAAAGA+TGG + chr1.2:34024691-34024710 MS.gene040683:CDS 30.0%
!! TCAAAAGGAAATATTTTGGG+TGG + chr1.2:34024627-34024646 MS.gene040683:CDS 30.0%
!!! GATTTTTGGTCACAATACAT+TGG + chr1.2:34024762-34024781 MS.gene040683:CDS 30.0%
AACATCACCTTCACTTTCAT+AGG - chr1.2:34025416-34025435 None:intergenic 35.0%
ACTATCTTCAAGAACTCTTC+TGG - chr1.2:34024305-34024324 None:intergenic 35.0%
ACTTACCAAAGTATAGCCAT+GGG - chr1.2:34025153-34025172 None:intergenic 35.0%
AGAGCTTCATGGAAAATTTG+TGG + chr1.2:34026384-34026403 MS.gene040683:CDS 35.0%
AGTACATACTCGAAAGAACA+TGG - chr1.2:34025776-34025795 None:intergenic 35.0%
ATGATTATTGTCTGTTGCAG+AGG + chr1.2:34024530-34024549 MS.gene040683:intron 35.0%
ATTTGTGGAGTTGACAAATG+GGG + chr1.2:34026399-34026418 MS.gene040683:CDS 35.0%
GAACAATGACAAGGTTATGA+AGG + chr1.2:34025684-34025703 MS.gene040683:intron 35.0%
GACAATGTTACTAATAGTGC+TGG + chr1.2:34024865-34024884 MS.gene040683:CDS 35.0%
GTAGTTATGGTGAATGAAAG+TGG - chr1.2:34025554-34025573 None:intergenic 35.0%
GTGACATATTATCAGTCAAC+AGG + chr1.2:34026442-34026461 MS.gene040683:CDS 35.0%
TATGCTCTTGAAAAGTCACT+TGG - chr1.2:34025338-34025357 None:intergenic 35.0%
TCATCTGCAAGCATTAGATT+TGG + chr1.2:34025380-34025399 MS.gene040683:CDS 35.0%
TGATTATTGTCTGTTGCAGA+GGG + chr1.2:34024531-34024550 MS.gene040683:intron 35.0%
! AAGAAGCATAAAGAGCTTCA+TGG + chr1.2:34026373-34026392 MS.gene040683:CDS 35.0%
! ATTTCCTTTTGAGCACCATT+TGG - chr1.2:34024619-34024638 None:intergenic 35.0%
! TGCAGGTTGGCAAAAATTTA+AGG + chr1.2:34026477-34026496 MS.gene040683:intron 35.0%
! TTTAGGTGGCCCATATTTTA+AGG + chr1.2:34024735-34024754 MS.gene040683:CDS 35.0%
AAATGGGGGAAAATCATGGT+TGG + chr1.2:34026414-34026433 MS.gene040683:CDS 40.0%
ACACGAATCTCGATTGTGAT+CGG - chr1.2:34026233-34026252 None:intergenic 40.0%
ACTTCCAAATGGTGCTCAAA+AGG + chr1.2:34024612-34024631 MS.gene040683:CDS 40.0%
AGAAGGAAAAACCTTTGGCT+TGG - chr1.2:34025580-34025599 None:intergenic 40.0%
ATAACTACTACCCAAGCCAA+AGG + chr1.2:34025566-34025585 MS.gene040683:CDS 40.0%
CATTGTGTTTCAGCAGACTT+AGG + chr1.2:34026191-34026210 MS.gene040683:intron 40.0%
GAACATGCCTATGAAAGTGA+AGG + chr1.2:34025406-34025425 MS.gene040683:CDS 40.0%
GACTTACCAAAGTATAGCCA+TGG - chr1.2:34025154-34025173 None:intergenic 40.0%
GATGATATTGGGAAGAGAAG+AGG + chr1.2:34025726-34025745 MS.gene040683:CDS 40.0%
TACTTTGCAGGTAGTAAGAG+AGG + chr1.2:34025032-34025051 MS.gene040683:intron 40.0%
TCGTGTGAATTCTACTTACC+CGG + chr1.2:34026247-34026266 MS.gene040683:CDS 40.0%
TGAATTCTACTTACCCGGTA+AGG + chr1.2:34026252-34026271 MS.gene040683:intron 40.0%
TGACAAATGGGGGAAAATCA+TGG + chr1.2:34026410-34026429 MS.gene040683:CDS 40.0%
TGCTTGCAGATGACACTTTA+AGG - chr1.2:34025373-34025392 None:intergenic 40.0%
TTTGTGGAGTTGACAAATGG+GGG + chr1.2:34026400-34026419 MS.gene040683:CDS 40.0%
! ACAGGATTTAGGTTCTATGC+AGG + chr1.2:34026460-34026479 MS.gene040683:CDS 40.0%
! GAAGGAAAAACCTTTGGCTT+GGG - chr1.2:34025579-34025598 None:intergenic 40.0%
! GAGAGGAGGTATGATTAAGA+AGG + chr1.2:34025049-34025068 MS.gene040683:CDS 40.0%
! GATTTAGGTTCTATGCAGGT+TGG + chr1.2:34026464-34026483 MS.gene040683:intron 40.0%
!! TTTGGCTTGGGTAGTAGTTA+TGG - chr1.2:34025567-34025586 None:intergenic 40.0%
AGAACTTGCATTGTGACCAG+TGG + chr1.2:34025455-34025474 MS.gene040683:CDS 45.0%
GAGGGTTCCCAAGAAATTTG+TGG + chr1.2:34024549-34024568 MS.gene040683:intron 45.0%
TGGAGCGTGAAGGTGATATT+TGG + chr1.2:34024647-34024666 MS.gene040683:CDS 45.0%
TGTGTTTCAGCAGACTTAGG+TGG + chr1.2:34026194-34026213 MS.gene040683:intron 45.0%
TTACGCCCATGGCTATACTT+TGG + chr1.2:34025145-34025164 MS.gene040683:CDS 45.0%
TTGTCACAATCTTACGCCCA+TGG + chr1.2:34025134-34025153 MS.gene040683:CDS 45.0%
TTTGCAGGTAGTAAGAGAGG+AGG + chr1.2:34025035-34025054 MS.gene040683:intron 45.0%
!! ATAGTGCTGGCACATCTCAA+AGG + chr1.2:34024878-34024897 MS.gene040683:CDS 45.0%
!! ATATTTTGGGTGGAGCGTGA+AGG + chr1.2:34024637-34024656 MS.gene040683:CDS 45.0%
!! GAGGCATTGAAGGAAGTTCA+AGG + chr1.2:34025745-34025764 MS.gene040683:CDS 45.0%
!! AAATAATTTATAATTTAAGA+GGG - chr1.2:34025989-34026008 None:intergenic 5.0%
!! TAAATAATTTATAATTTAAG+AGG - chr1.2:34025990-34026009 None:intergenic 5.0%
!!! TTTTGAATTTATAATAATTT+AGG + chr1.2:34025934-34025953 MS.gene040683:intron 5.0%
CTTGCATTGTGACCAGTGGT+TGG + chr1.2:34025459-34025478 MS.gene040683:CDS 50.0%
!! GGGAAGAGAAGAGGCATTGA+AGG + chr1.2:34025735-34025754 MS.gene040683:CDS 50.0%
GGCAAATGGCTTCCAACCAC+TGG - chr1.2:34025474-34025493 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 34024287 34026600 34024287 ID=MS.gene040683
chr1.2 mRNA 34024287 34026600 34024287 ID=MS.gene040683.t1;Parent=MS.gene040683
chr1.2 exon 34024287 34024355 34024287 ID=MS.gene040683.t1.exon1;Parent=MS.gene040683.t1
chr1.2 CDS 34024287 34024355 34024287 ID=cds.MS.gene040683.t1;Parent=MS.gene040683.t1
chr1.2 exon 34024550 34024943 34024550 ID=MS.gene040683.t1.exon2;Parent=MS.gene040683.t1
chr1.2 CDS 34024550 34024943 34024550 ID=cds.MS.gene040683.t1;Parent=MS.gene040683.t1
chr1.2 exon 34025042 34025166 34025042 ID=MS.gene040683.t1.exon3;Parent=MS.gene040683.t1
chr1.2 CDS 34025042 34025166 34025042 ID=cds.MS.gene040683.t1;Parent=MS.gene040683.t1
chr1.2 exon 34025329 34025587 34025329 ID=MS.gene040683.t1.exon4;Parent=MS.gene040683.t1
chr1.2 CDS 34025329 34025587 34025329 ID=cds.MS.gene040683.t1;Parent=MS.gene040683.t1
chr1.2 exon 34025697 34025786 34025697 ID=MS.gene040683.t1.exon5;Parent=MS.gene040683.t1
chr1.2 CDS 34025697 34025786 34025697 ID=cds.MS.gene040683.t1;Parent=MS.gene040683.t1
chr1.2 exon 34026204 34026268 34026204 ID=MS.gene040683.t1.exon6;Parent=MS.gene040683.t1
chr1.2 CDS 34026204 34026268 34026204 ID=cds.MS.gene040683.t1;Parent=MS.gene040683.t1
chr1.2 exon 34026352 34026481 34026352 ID=MS.gene040683.t1.exon7;Parent=MS.gene040683.t1
chr1.2 CDS 34026352 34026481 34026352 ID=cds.MS.gene040683.t1;Parent=MS.gene040683.t1
chr1.2 exon 34026572 34026600 34026572 ID=MS.gene040683.t1.exon8;Parent=MS.gene040683.t1
chr1.2 CDS 34026572 34026600 34026572 ID=cds.MS.gene040683.t1;Parent=MS.gene040683.t1
Gene Sequence

>MS.gene040683

ATGTCATTACATCATCCAGAAGAGTTCTTGAAGATAGTTCGAAATCATGAACTACATAAGGGAGAGCTTGTAAGCATATTACAAAATTACATTCGATAGAATTTACATGTTAAATTAAATATACATGCAACTAAATATTCCTTTCAATTACAAATCACAATCCAACTATACATTTGTTAATAATTTTTATAAATTGTCTATAAAGTTTCTTCTTCCTGTTGCATTACATATCCTTATTCATAAATGATTATTGTCTGTTGCAGAGGGTTCCCAAGAAATTTGTGGAGAAATATTGGAAAAAAATACCAAATCCAGTAATTCTTAGACTTCCAAATGGTGCTCAAAAGGAAATATTTTGGGTGGAGCGTGAAGGTGATATTTGGTTTAAGAGAAATTGGGAGAATTTTGCAAAGTCTCTAAAAGATGGATATGCTTTAGTATTCAAATATTTAGGTGGCCCATATTTTAAGGTTAAGATTTTTGGTCACAATACATTGGAAAAAGACTATTCCAATATAAAATTCATTGATGAAAGTTGTGAAGGTAGAGAAGTTCAAGAAGTTGTTGAACTGAGTGATGACAATGTTACTAATAGTGCTGGCACATCTCAAAGGAGAAAAAACGGCAAGAGAAAAATTATTCAGCAAAATATCACAGGTGAGTTCATCTATTTTTTTTTATTTTTTTTATTTCAATTGTTATTCTACCTTATATATGGCTAAAATAGATTTTTTTTTTTTTTTTTTACTTTGCAGGTAGTAAGAGAGGAGGTATGATTAAGAAGGCTAAAAAATGCTCAACAATTAGTGAGAGAGACAATAATGAGAATCCAAGTTTTGAACTTGAATTGTCACAATCTTACGCCCATGGCTATACTTTGGTAAGTCTACTAATAAAACATTATACTTATGTTCAAATATTATTTTTTGAAGGAACTTATGTTTTAAATTATTAGTTATTTGGCTATATCACATAAATTATATAAGTTACTAGTAAATTTTGGCTTTAATTAATATCTCTAATAAACCTTGAATTGAAATAGAGGATACCAAGTGACTTTTCAAGAGCATATTTGAATGAGAACCTTAAAGTGTCATCTGCAAGCATTAGATTTGGTGAGAACATGCCTATGAAAGTGAAGGTGATGTTTCAAGATATCAAGAATAATAGAACTTGCATTGTGACCAGTGGTTGGAAGCCATTTGCCAAAAAATATAACTTACAAGTTGGTGATAAATGTAAATTTGTGATGACTCAACTTCAACCACTTTCATTCACCATAACTACTACCCAAGCCAAAGGTTTTTCCTTCTTACTTTATTTAAAAAAATTGTTTTTTCATTGACATGTGATTCACCAAATTTGTTTAATATCAATTGATTTTCTCCAATTCCTTTGAACAATGACAAGGTTATGAAGGAATGATCTCTTCTTATGATGATGATATTGGGAAGAGAAGAGGCATTGAAGGAAGTTCAAGGAGCTGCCATGTTCTTTCGAGTATGTACTTGTTTAAAGTTTTTAGATTTTTTAAATAGGTTTTTGAATTAAGTGTTAATTTAGTATCTAAAACTTTTTAAAAAATTATAACTAGTTTTCTAACATTAGGCTTTCTTACATTTTAAAAATAATTTATAACAATATCTGTTTTGAATTTATAATAATTTAGGTTTATGTCTCTTACAATTTATTTACCTCTCCCTCTTAAATTATAAATTATTTAAAAGTTCAAGGACCAATTAAAAAAAAAACTAGTTCAAGAATATCAAATAAAAATCTGTAAATAGTGTACATATTTTTTTTTTTTTAATTTCAATATTTTCTAGTGTCAAAGAGATGAAGAAACAAGTTTATCAATATTTAATGTCGACAACAATCATCATATCATAAAAATTATATATCTTCATTGTGTTTCAGCAGACTTAGGTGGTAATGTGATGAAACCGATCACAATCGAGATTCGTGTGAATTCTACTTACCCGGTAAGGATTAATTATGTTAAATGTGGTTACTATATAGATATATGTTAAAACTGTGTATAAATAAAAATTTGCTGTGTTTGCAGTATATTCGACATGAGTTTTTTAAGAAGCATAAAGAGCTTCATGGAAAATTTGTGGAGTTGACAAATGGGGGAAAATCATGGTTGGTAAAAGTGACATATTATCAGTCAACAGGATTTAGGTTCTATGCAGGTTGGCAAAAATTTAAGGAAGATTGCAAATTGAAGATTGGAGATACTTGCAAATTGAAGTTGATTGATGAAAAAATGTTTGTGTTTCAAGTTTCAATTGAAAGACTTCCCCACTACTAG
Protein sequence

>MS.gene040683.t1

MSLHHPEEFLKIVRNHELHKGELRVPKKFVEKYWKKIPNPVILRLPNGAQKEIFWVEREGDIWFKRNWENFAKSLKDGYALVFKYLGGPYFKVKIFGHNTLEKDYSNIKFIDESCEGREVQEVVELSDDNVTNSAGTSQRRKNGKRKIIQQNITGSKRGGMIKKAKKCSTISERDNNENPSFELELSQSYAHGYTLRIPSDFSRAYLNENLKVSSASIRFGENMPMKVKVMFQDIKNNRTCIVTSGWKPFAKKYNLQVGDKCKFVMTQLQPLSFTITTTQAKGYEGMISSYDDDIGKRRGIEGSSRSCHVLSTDLGGNVMKPITIEIRVNSTYPYIRHEFFKKHKELHGKFVELTNGGKSWLVKVTYYQSTGFRFYAVSIERLPHY