AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene067204

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067204.t1 MTR_1g035570 62.136 412 65 6 210 550 11 402 4.12e-156 452
MS.gene067204.t1 MTR_1g035640 46.243 346 108 6 210 546 11 287 2.89e-88 280
MS.gene067204.t1 MTR_1g035640 50.602 83 30 1 461 543 394 465 5.22e-15 77.8
MS.gene067204.t1 MTR_1g035620 38.623 334 128 9 213 542 18 278 6.84e-61 207
MS.gene067204.t1 MTR_1g050845 38.739 333 115 9 213 541 18 265 7.14e-57 204
MS.gene067204.t1 MTR_1g035490 50.893 224 55 4 327 542 19 195 3.76e-56 192
MS.gene067204.t1 MTR_1g035490 67.347 98 18 1 461 544 233 330 8.30e-35 134
MS.gene067204.t1 MTR_1g035650 44.444 216 81 3 213 419 18 203 6.78e-52 176
MS.gene067204.t1 MTR_6g061070 30.172 348 172 9 213 542 27 321 8.69e-35 137
MS.gene067204.t1 MTR_1g035520 30.836 347 165 11 220 542 88 383 8.73e-34 132
MS.gene067204.t1 MTR_1g035480 48.739 119 57 2 213 331 26 140 7.78e-31 119
MS.gene067204.t1 MTR_1g033740 38.095 168 83 4 213 380 31 177 1.49e-28 112
MS.gene067204.t1 MTR_8g103940 25.364 343 181 8 213 541 48 329 4.33e-28 118
MS.gene067204.t1 MTR_1g035510 32.479 234 126 8 220 442 2 214 9.39e-28 111
MS.gene067204.t1 MTR_5g044670 27.536 345 182 9 209 545 21 305 3.39e-27 112
MS.gene067204.t1 MTR_1g035500 45.378 119 61 2 213 331 34 148 1.50e-26 107
MS.gene067204.t1 MTR_3g098790 28.571 336 173 10 213 541 22 297 1.01e-25 108
MS.gene067204.t1 MTR_7g050560 33.937 221 119 6 213 430 22 218 1.39e-25 107
MS.gene067204.t1 MTR_7g050710 26.647 334 180 9 218 541 27 305 7.09e-24 102
MS.gene067204.t1 MTR_1g035470 40.650 123 68 2 220 338 2 123 7.88e-24 97.8
MS.gene067204.t1 MTR_3g061310 26.100 341 173 12 210 541 14 284 2.74e-22 97.4
MS.gene067204.t1 MTR_7g050590 27.692 325 184 11 220 541 2 278 2.87e-22 97.8
MS.gene067204.t1 MTR_7g050720 30.943 265 113 7 204 430 6 238 6.52e-22 97.1
MS.gene067204.t1 MTR_3g061350 25.444 338 178 11 210 541 14 283 2.20e-21 94.7
MS.gene067204.t1 MTR_1g108780 24.702 336 181 10 219 541 12 288 2.40e-21 97.4
MS.gene067204.t1 MTR_3g061370 24.927 341 176 12 210 541 11 280 9.62e-20 90.1
MS.gene067204.t1 MTR_3g061320 23.894 339 177 12 210 541 14 278 5.29e-19 87.8
MS.gene067204.t1 MTR_6g043890 25.150 334 202 12 212 532 23 321 7.36e-19 88.6
MS.gene067204.t1 MTR_3g061340 23.684 342 171 14 210 542 14 274 2.31e-18 85.9
MS.gene067204.t1 MTR_3g061330 26.244 221 136 6 210 425 14 212 3.51e-18 84.7
MS.gene067204.t1 MTR_7g050580 26.113 337 171 9 213 541 22 288 6.88e-18 85.1
MS.gene067204.t1 MTR_3g061290 32.099 162 92 6 210 365 14 163 3.61e-17 80.5
MS.gene067204.t1 MTR_1g035460 22.515 342 187 7 220 541 2 285 4.38e-17 84.0
MS.gene067204.t1 MTR_4g119990 25.369 339 176 14 210 529 17 297 2.00e-15 78.6
MS.gene067204.t1 MTR_7g050640 42.222 90 48 2 217 302 26 115 2.05e-13 67.4
MS.gene067204.t1 MTR_3g005495 28.873 142 84 4 201 331 246 381 1.90e-11 66.6
MS.gene067204.t1 MTR_4g068320 38.889 90 53 1 213 300 15 104 2.94e-11 65.9
MS.gene067204.t1 MTR_3g005480 28.671 143 92 4 201 339 24 160 5.34e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067204.t1 AT3G18990 23.467 375 198 12 213 547 15 340 2.62e-16 81.3
MS.gene067204.t1 AT3G18990 23.861 373 195 12 213 545 15 338 5.75e-16 79.7

Find 106 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTAGCTGTGCTTCTTTA+AGG 0.068553 1.2:-20578582 None:intergenic
CTTCCCAGTTAAATCATTTC+TGG 0.111667 1.2:+20583410 None:intergenic
CAACACCGTTTGGAAATTTA+AGG 0.151014 1.2:+20581006 None:intergenic
GAAAACTCACCTGAGAATTT+TGG 0.197526 1.2:+20580591 None:intergenic
TTTGCAAAGTCTTTCAAATA+TGG 0.208675 1.2:-20580921 MS.gene067204:CDS
CTTCAAAATTGCATGAAATT+AGG 0.216636 1.2:-20583471 MS.gene067204:CDS
GTGTTTAATGTTTCAATTGT+AGG 0.249847 1.2:-20578612 MS.gene067204:CDS
AAATATTGTGGAGTTGAAAA+TGG 0.256652 1.2:-20578781 MS.gene067204:CDS
CCGCTTCTTTCTTCTTGTTT+CGG 0.257218 1.2:+20582630 None:intergenic
AAATCCAGAAATGATTTAAC+TGG 0.267078 1.2:-20583414 MS.gene067204:CDS
TGGAGAGAAATGGTGATATT+TGG 0.267670 1.2:-20580965 MS.gene067204:CDS
TTTCTGGATTTCATTCTAAC+AGG 0.272584 1.2:+20583426 None:intergenic
TTAATGGAACTGCAACAATA+AGG 0.277244 1.2:-20580002 MS.gene067204:CDS
TATTTCTCCACATATATCTT+AGG 0.281171 1.2:+20581056 None:intergenic
TTCATCAACTGATTTGATAT+TGG 0.281476 1.2:+20580815 None:intergenic
TTATGCCAATGGCTATTTCT+TGG 0.296975 1.2:-20580138 MS.gene067204:intron
TTTGGAAATTTAAGGAATAT+AGG 0.302976 1.2:+20581014 None:intergenic
CTTGTCCTTTCAGCTTGCTT+TGG 0.306871 1.2:+20580657 None:intergenic
GTAGTGTGTTTACCAGTTCT+AGG 0.313968 1.2:+20584040 None:intergenic
CTCTTAACTTTCAAATTCAT+TGG 0.314459 1.2:-20580894 MS.gene067204:CDS
CATTAACAGCTTCAGATGTT+AGG 0.318603 1.2:+20580195 None:intergenic
AGATATATGTGGAGAAATAT+TGG 0.326941 1.2:-20581052 MS.gene067204:CDS
TTGGAAATTTAAGGAATATA+GGG 0.346499 1.2:+20581015 None:intergenic
TCCTTCTCCTTCATGATTAC+CGG 0.350959 1.2:+20583030 None:intergenic
TGGCAAGAGAAAACTGAGTA+TGG 0.363408 1.2:-20580631 MS.gene067204:CDS
TAATGGAACTGCAACAATAA+GGG 0.376410 1.2:-20580001 MS.gene067204:CDS
TACCGAACTGCCGCTGCACT+TGG 0.381040 1.2:+20582555 None:intergenic
CAGGTTGATGATTCCTTGTC+TGG 0.387948 1.2:-20583324 MS.gene067204:CDS
ACCGCTGATTCCGGCGGCAG+CGG 0.388755 1.2:-20582663 MS.gene067204:CDS
GTGAAAGAAACCGCTGATTC+CGG 0.394281 1.2:-20582672 MS.gene067204:CDS
ATAATTTATTTCTAAAGTAT+TGG 0.398912 1.2:+20580839 None:intergenic
CCTTAAAGAAGCACAGCTAA+TGG 0.407485 1.2:+20578582 None:intergenic
ACTCGCCAAGCTGAATAGTT+TGG 0.421442 1.2:+20584070 None:intergenic
GCACTTGGCTGAACTGCAAT+CGG 0.424222 1.2:+20582570 None:intergenic
GAAGTGAGTGTGAGGTATTA+TGG 0.424663 1.2:-20579958 MS.gene067204:CDS
TACACTGAGAAGGATTTGAT+TGG 0.425149 1.2:-20583384 MS.gene067204:CDS
TAACTTGTCTGGCAAGAAAC+AGG 0.426929 1.2:-20583343 MS.gene067204:CDS
AAAGAATGCAAAGTGGAGAT+TGG 0.431700 1.2:-20578675 MS.gene067204:CDS
TCCGGTGTTCACCATGGAAA+TGG 0.437215 1.2:-20584120 MS.gene067204:CDS
GATTCCGGCGGCAGCGGAAG+AGG 0.442597 1.2:-20582657 MS.gene067204:CDS
ACCAAAGGAGTTTATGAAAA+GGG 0.442898 1.2:-20578814 MS.gene067204:CDS
TCAAATAAATAGAGATTCAA+TGG 0.450076 1.2:-20582717 MS.gene067204:intron
AATATTGTGGAGTTGAAAAT+GGG 0.451536 1.2:-20578780 MS.gene067204:CDS
AATGTGGAGAATAACTTGTC+TGG 0.462624 1.2:-20583354 MS.gene067204:CDS
CAAAGTTGCCATGGTGAAGA+AGG 0.463267 1.2:-20580228 MS.gene067204:CDS
TTGTCTGGCAAACAACAAAC+TGG 0.465598 1.2:-20583309 MS.gene067204:CDS
TTGTGAAGAACTAGTGTTGA+AGG 0.466818 1.2:+20583006 None:intergenic
TACCAAAGGAGTTTATGAAA+AGG 0.470772 1.2:-20578815 MS.gene067204:CDS
AGTCATTATAACTTCAAAAG+AGG 0.475259 1.2:+20580166 None:intergenic
TTAACTTTCAAATTCATTGG+TGG 0.475675 1.2:-20580891 MS.gene067204:CDS
CGAGTTGCAAAACCTAGAAC+TGG 0.490298 1.2:-20584052 MS.gene067204:intron
TGTGCTAACTGTAAGATCTT+GGG 0.493287 1.2:-20583501 MS.gene067204:intron
TGTGGCTGTAGGGTCGGTAA+AGG 0.497627 1.2:-20578714 MS.gene067204:intron
GGCTCTAATAATAAGAATGA+AGG 0.500504 1.2:-20583450 MS.gene067204:CDS
GTCATTATAACTTCAAAAGA+GGG 0.501493 1.2:+20580167 None:intergenic
AGCCAAGTGCAGCGGCAGTT+CGG 0.508596 1.2:-20582557 MS.gene067204:intron
ACCACCCAACCAAAATTCTC+AGG 0.510316 1.2:-20580600 MS.gene067204:intron
ACACTGAGAAGGATTTGATT+GGG 0.511901 1.2:-20583383 MS.gene067204:CDS
TCCGCTGCCGCCGGAATCAG+CGG 0.513416 1.2:+20582662 None:intergenic
GGGATATCATGAAAATATTG+TGG 0.516599 1.2:-20578793 MS.gene067204:CDS
GATGAGGAAGCCACTGAAGA+AGG 0.517797 1.2:-20580741 MS.gene067204:CDS
ACTGTCTTCACCTTCTTCAG+TGG 0.523092 1.2:+20580731 None:intergenic
GCTGTAGGGTCGGTAAAGGT+TGG 0.523717 1.2:-20578710 MS.gene067204:intron
TGAAGAGAGTTCAGATGAGG+TGG 0.524599 1.2:-20580685 MS.gene067204:CDS
CATGTTGGAATTGATGTGTC+TGG 0.527383 1.2:-20583234 MS.gene067204:intron
CAAACTGGTATTGACTTGTC+TGG 0.529586 1.2:-20583294 MS.gene067204:CDS
CAGAATCAGAGCAACATGTC+CGG 0.531063 1.2:-20584138 None:intergenic
ATATTCCTTAAATTTCCAAA+CGG 0.536219 1.2:-20581011 MS.gene067204:CDS
GAAGGAGCACAAGACATTCA+AGG 0.537945 1.2:-20579167 MS.gene067204:CDS
CAATAAGGGTTGGTAATGAA+AGG 0.551596 1.2:-20579987 MS.gene067204:CDS
TAGCTTCACTACCATTTCCA+TGG 0.560047 1.2:+20584109 None:intergenic
TGTTCTCTTGAAAACTCACT+TGG 0.561927 1.2:+20580036 None:intergenic
TACAGAAGGTCGTGATGTGA+AGG 0.563378 1.2:-20579185 MS.gene067204:intron
CAAAGCAAGCTGAAAGGACA+AGG 0.563869 1.2:-20580656 MS.gene067204:CDS
AAGTGATGAATCAAGTGATG+AGG 0.567308 1.2:-20580757 MS.gene067204:CDS
CCGAAACAAGAAGAAAGAAG+CGG 0.568733 1.2:-20582630 MS.gene067204:CDS
TTCTGGATTTCATTCTAACA+GGG 0.573037 1.2:+20583427 None:intergenic
AGTTTGTTGTTTGCCAGACA+AGG 0.574428 1.2:+20583311 None:intergenic
TGCAGTTCAGCCAAGTGCAG+CGG 0.575528 1.2:-20582565 MS.gene067204:CDS
ACCATTTCCATGGTGAACAC+CGG 0.579268 1.2:+20584119 None:intergenic
GGAACTGCAACAATAAGGGT+TGG 0.581562 1.2:-20579997 MS.gene067204:CDS
CCAAAGGAGTTTATGAAAAG+GGG 0.584375 1.2:-20578813 MS.gene067204:CDS
CAAGCTGAAAGGACAAGGAA+TGG 0.584780 1.2:-20580651 MS.gene067204:CDS
GAGGGTTCCTAAGATATATG+TGG 0.586451 1.2:-20581063 MS.gene067204:CDS
ATGACTCAATCTTATGCCAA+TGG 0.587654 1.2:-20580149 MS.gene067204:CDS
ACCGGTAATCATGAAGGAGA+AGG 0.597010 1.2:-20583031 MS.gene067204:CDS
GTATCTGCAGTGTGTACCAA+AGG 0.598126 1.2:-20578829 MS.gene067204:intron
AGGTAGTAACAAAGTTGCCA+TGG 0.603454 1.2:-20580237 MS.gene067204:CDS
ACTTACCAAGAAATAGCCAT+TGG 0.604417 1.2:+20580133 None:intergenic
GGTTGGTAATGAAAGGAGTG+TGG 0.605745 1.2:-20579980 MS.gene067204:CDS
TGTTTCACCGGTAATCATGA+AGG 0.608551 1.2:-20583037 MS.gene067204:CDS
TATGTGGAGAAATATTGGAA+AGG 0.617787 1.2:-20581047 MS.gene067204:CDS
TGGGAAGATATACACTGAGA+AGG 0.621885 1.2:-20583394 MS.gene067204:CDS
ATTCATGAAAGAATGCAAAG+TGG 0.625279 1.2:-20578682 MS.gene067204:CDS
TTTCGTGAAGAACAAAACCC+CGG 0.628138 1.2:-20579143 MS.gene067204:intron
AAATGCCAAAGCAAGCTGAA+AGG 0.631434 1.2:-20580662 MS.gene067204:CDS
TGATGATGTGACTGTTTCAC+CGG 0.631868 1.2:-20583049 MS.gene067204:CDS
TTGTCTGGTAAGACACATGT+TGG 0.634785 1.2:-20583249 MS.gene067204:CDS
TGAAAATGGGGAGAAAGTCA+TGG 0.636268 1.2:-20578767 MS.gene067204:intron
AATCCAGAAATGATTTAACT+GGG 0.640650 1.2:-20583413 MS.gene067204:CDS
AAGTGAAGAGAGTTCAGATG+AGG 0.642728 1.2:-20580688 MS.gene067204:CDS
AACATGTCCGGTGTTCACCA+TGG 0.649246 1.2:-20584126 MS.gene067204:CDS
GGAGTGTGGAAGTGAGTGTG+AGG 0.659449 1.2:-20579966 MS.gene067204:CDS
AAAGAAACCGCTGATTCCGG+CGG 0.670255 1.2:-20582669 MS.gene067204:CDS
GGAAATGGTAGTGAAGCTAG+AGG 0.678706 1.2:-20584105 MS.gene067204:CDS
ATATTGTGGAGTTGAAAATG+GGG 0.692849 1.2:-20578779 MS.gene067204:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATATAATAGTTCAA+AGG + chr1.2:20583206-20583225 None:intergenic 10.0%
!! TATTTATTATACATTTGATT+TGG + chr1.2:20582431-20582450 None:intergenic 10.0%
!!! AAAAATATGTGATTATTTTT+TGG - chr1.2:20582322-20582341 MS.gene067204:intron 10.0%
!!! AAAATATGTGATTATTTTTT+GGG - chr1.2:20582323-20582342 MS.gene067204:intron 10.0%
!!! ATAATTTATTTCTAAAGTAT+TGG + chr1.2:20581871-20581890 None:intergenic 10.0%
!!! CAAATATATCTAAATTTTTT+GGG - chr1.2:20583451-20583470 MS.gene067204:CDS 10.0%
!!! TCAAATATATCTAAATTTTT+TGG - chr1.2:20583450-20583469 MS.gene067204:CDS 10.0%
!! AAAAACATTAAAAAAGTTAG+AGG + chr1.2:20583133-20583152 None:intergenic 15.0%
!! AAACTTATGAATGATTTATA+AGG - chr1.2:20583241-20583260 MS.gene067204:CDS 15.0%
!! AATTGAACGAAAATTAATTA+TGG + chr1.2:20583666-20583685 None:intergenic 15.0%
!! ACGAAGTTTATATTTATAAT+AGG - chr1.2:20580797-20580816 MS.gene067204:CDS 15.0%
!! ATTGAACGAAAATTAATTAT+GGG + chr1.2:20583665-20583684 None:intergenic 15.0%
!! ATTTGAATAGATTTATAGTT+AGG + chr1.2:20583436-20583455 None:intergenic 15.0%
!! TAAAAAATATTTCAATTCAC+AGG + chr1.2:20583317-20583336 None:intergenic 15.0%
!! TCAATAATCATACATAAATT+AGG + chr1.2:20580208-20580227 None:intergenic 15.0%
!! TTATTGTTCAAAAAACAATA+GGG - chr1.2:20579621-20579640 MS.gene067204:intron 15.0%
!! TTTATTGTTCAAAAAACAAT+AGG - chr1.2:20579620-20579639 MS.gene067204:intron 15.0%
!!! ATATTTGGTTTCAAAAAAAT+TGG - chr1.2:20581757-20581776 MS.gene067204:intron 15.0%
!!! CATTTAGTTTTTTTTTTTGA+GGG - chr1.2:20579813-20579832 MS.gene067204:intron 15.0%
!!! TAAAGATATTTTTTGTAGTA+TGG + chr1.2:20581338-20581357 None:intergenic 15.0%
!!! TATTTGGTTTCAAAAAAATT+GGG - chr1.2:20581758-20581777 MS.gene067204:intron 15.0%
!!! TATTTTAAGGTTAAGATATT+TGG - chr1.2:20581843-20581862 MS.gene067204:intron 15.0%
!!! TCATTTAGTTTTTTTTTTTG+AGG - chr1.2:20579812-20579831 MS.gene067204:intron 15.0%
!!! TGAAATATCTAAAATAACTA+GGG - chr1.2:20580867-20580886 MS.gene067204:CDS 15.0%
!!! TGTTGAACAAAAAATATTTT+GGG - chr1.2:20581719-20581738 MS.gene067204:intron 15.0%
!!! TTAGATTTTAAAATTGTAGA+GGG - chr1.2:20583151-20583170 MS.gene067204:intron 15.0%
!!! TTGAAATATCTAAAATAACT+AGG - chr1.2:20580866-20580885 MS.gene067204:CDS 15.0%
!!! TTGCAAATATAAACATTTTT+AGG + chr1.2:20580837-20580856 None:intergenic 15.0%
!!! TTTAGATTTTAAAATTGTAG+AGG - chr1.2:20583150-20583169 MS.gene067204:intron 15.0%
!!! TTTTTTTTTTATCCATTACA+AGG - chr1.2:20583016-20583035 MS.gene067204:CDS 15.0%
!! AATACTTACAGATAACAAAT+AGG + chr1.2:20580327-20580346 None:intergenic 20.0%
!! AGGTTAAAAGTTAATAGAAT+AGG + chr1.2:20583724-20583743 None:intergenic 20.0%
!! ATATAAAAATGGCAGATTAA+GGG - chr1.2:20581039-20581058 MS.gene067204:CDS 20.0%
!! ATATTCCTTAAATTTCCAAA+CGG - chr1.2:20581696-20581715 MS.gene067204:intron 20.0%
!! ATCTATAAATCTAACCATAA+CGG + chr1.2:20583815-20583834 None:intergenic 20.0%
!! TAAATATAAACTTCGTTGTT+AGG + chr1.2:20580793-20580812 None:intergenic 20.0%
!! TATATAAAAATGGCAGATTA+AGG - chr1.2:20581038-20581057 MS.gene067204:CDS 20.0%
!! TCAAATAAATAGAGATTCAA+TGG - chr1.2:20579990-20580009 MS.gene067204:CDS 20.0%
!! TTGGAAATTTAAGGAATATA+GGG + chr1.2:20581695-20581714 None:intergenic 20.0%
!! TTTGGAAATTTAAGGAATAT+AGG + chr1.2:20581696-20581715 None:intergenic 20.0%
!!! ATCATGTATATTCTTGTTTT+TGG - chr1.2:20578829-20578848 MS.gene067204:intron 20.0%
!!! CATTAAGTTCTGATTAATTA+AGG - chr1.2:20580752-20580771 MS.gene067204:CDS 20.0%
!!! GTGTTGAACAAAAAATATTT+TGG - chr1.2:20581718-20581737 MS.gene067204:intron 20.0%
!!! TAATCTGCCATTTTTATATA+AGG + chr1.2:20581038-20581057 None:intergenic 20.0%
!!! TACTTTTAAGAGTTATTGAA+TGG - chr1.2:20582218-20582237 MS.gene067204:intron 20.0%
!!! TTTTATGTAATTAATCCTAC+CGG + chr1.2:20583586-20583605 None:intergenic 20.0%
! AAATAGTTAATGCCTAAACT+TGG - chr1.2:20582446-20582465 MS.gene067204:intron 25.0%
! AAATATTGTGGAGTTGAAAA+TGG - chr1.2:20583926-20583945 MS.gene067204:intron 25.0%
! AAATCCAGAAATGATTTAAC+TGG - chr1.2:20579293-20579312 MS.gene067204:intron 25.0%
! AAGATTATCCTATGAAAATC+CGG + chr1.2:20581489-20581508 None:intergenic 25.0%
! AATATTGTGGAGTTGAAAAT+GGG - chr1.2:20583927-20583946 MS.gene067204:intron 25.0%
! AATCCAGAAATGATTTAACT+GGG - chr1.2:20579294-20579313 MS.gene067204:intron 25.0%
! AATTATTATCAGAGTCTTTG+TGG - chr1.2:20583975-20583994 MS.gene067204:intron 25.0%
! ACCTCTAATGTATAATAAAG+TGG - chr1.2:20583740-20583759 MS.gene067204:intron 25.0%
! AGAATAAGATTTAAGAACTG+AGG - chr1.2:20580406-20580425 MS.gene067204:intron 25.0%
! AGATATATGTGGAGAAATAT+TGG - chr1.2:20581655-20581674 MS.gene067204:intron 25.0%
! AGTCATTATAACTTCAAAAG+AGG + chr1.2:20582544-20582563 None:intergenic 25.0%
! ATTACAAGGTCATAAAAAAG+GGG - chr1.2:20583030-20583049 MS.gene067204:CDS 25.0%
! ATTAGTACTTAACCAACAAA+AGG + chr1.2:20579011-20579030 None:intergenic 25.0%
! CATTACAAGGTCATAAAAAA+GGG - chr1.2:20583029-20583048 MS.gene067204:CDS 25.0%
! CGATTATAGATAGATAGATT+AGG - chr1.2:20578706-20578725 MS.gene067204:CDS 25.0%
! CTAAAATCAACAAAACCATA+AGG + chr1.2:20578900-20578919 None:intergenic 25.0%
! CTCTTAACTTTCAAATTCAT+TGG - chr1.2:20581813-20581832 MS.gene067204:intron 25.0%
! CTTCAAAATTGCATGAAATT+AGG - chr1.2:20579236-20579255 MS.gene067204:intron 25.0%
! GACAACACCTTATATAAAAA+TGG - chr1.2:20581028-20581047 MS.gene067204:CDS 25.0%
! GTCATTATAACTTCAAAAGA+GGG + chr1.2:20582543-20582562 None:intergenic 25.0%
! GTGTTTAATGTTTCAATTGT+AGG - chr1.2:20584095-20584114 MS.gene067204:CDS 25.0%
! GTTCAATGGATATTATAGTT+AGG - chr1.2:20580512-20580531 MS.gene067204:intron 25.0%
! GTTCTGATTAATTAAGGATT+AGG - chr1.2:20580758-20580777 MS.gene067204:CDS 25.0%
! TAAAAGAAGAAACTGAAAGA+TGG + chr1.2:20583405-20583424 None:intergenic 25.0%
! TAAGTACTAATAATTGTCCT+TGG - chr1.2:20579020-20579039 MS.gene067204:intron 25.0%
! TATTTCTCCACATATATCTT+AGG + chr1.2:20581654-20581673 None:intergenic 25.0%
! TCCACTTTATTATACATTAG+AGG + chr1.2:20583744-20583763 None:intergenic 25.0%
! TCTAAACCATAAAAAACATC+AGG + chr1.2:20579596-20579615 None:intergenic 25.0%
! TTAACTTTCAAATTCATTGG+TGG - chr1.2:20581816-20581835 MS.gene067204:intron 25.0%
! TTCATCTTCTATTAATTGCT+TGG - chr1.2:20578860-20578879 MS.gene067204:intron 25.0%
! TTGAATTTCTTTATTGCAGA+GGG - chr1.2:20581626-20581645 MS.gene067204:intron 25.0%
! TTGCTTACTAGTAAATGAAA+AGG + chr1.2:20580460-20580479 None:intergenic 25.0%
! TTTACTAGTAAGCAATTGTT+TGG - chr1.2:20580465-20580484 MS.gene067204:intron 25.0%
! TTTATGTAATTAATCCTACC+GGG + chr1.2:20583585-20583604 None:intergenic 25.0%
! TTTGAATTTCTTTATTGCAG+AGG - chr1.2:20581625-20581644 MS.gene067204:intron 25.0%
! TTTGCAAAGTCTTTCAAATA+TGG - chr1.2:20581786-20581805 MS.gene067204:intron 25.0%
!! AATGTCATTTCAACATATTC+CGG - chr1.2:20581467-20581486 MS.gene067204:intron 25.0%
!! CAAGAATTGCATGTAAATTT+TGG - chr1.2:20578770-20578789 MS.gene067204:CDS 25.0%
!! CTAATGTCTTATGAAAGTTT+TGG - chr1.2:20579056-20579075 MS.gene067204:intron 25.0%
!! GAACACTTGAAAGATTTTAA+TGG - chr1.2:20582689-20582708 MS.gene067204:CDS 25.0%
!! GTAAATTTGAGATGATTCAA+GGG - chr1.2:20582849-20582868 MS.gene067204:intron 25.0%
!! GTTAAATTTTTACCCTTTCT+TGG - chr1.2:20578964-20578983 MS.gene067204:intron 25.0%
!! TAAAACATGATTTGAAACAG+TGG - chr1.2:20582645-20582664 MS.gene067204:CDS 25.0%
!! TGTAAATTTGAGATGATTCA+AGG - chr1.2:20582848-20582867 MS.gene067204:intron 25.0%
!! TTTTTCTGATGTTACTACTT+TGG + chr1.2:20581245-20581264 None:intergenic 25.0%
!!! AAAGTTTTGGATTTTATTGC+TGG - chr1.2:20579069-20579088 MS.gene067204:intron 25.0%
!!! TGAACAAAAAATATTTTGGG+TGG - chr1.2:20581722-20581741 MS.gene067204:intron 25.0%
!!! TTCATCAACTGATTTGATAT+TGG + chr1.2:20581895-20581914 None:intergenic 25.0%
!!! TTGTGATACTGTTTTTGAAT+TGG - chr1.2:20580258-20580277 MS.gene067204:intron 25.0%
!!! TTTTTATATAAGGTGTTGTC+TGG + chr1.2:20581028-20581047 None:intergenic 25.0%
AAAATCATGAAAGCCAAGAA+AGG + chr1.2:20578980-20578999 None:intergenic 30.0%
AAATCATGAAAGCCAAGAAA+GGG + chr1.2:20578979-20578998 None:intergenic 30.0%
AACTGAAAGATGGATAAGTT+AGG + chr1.2:20583395-20583414 None:intergenic 30.0%
AATAGGACTAACTTGACTAA+CGG + chr1.2:20583707-20583726 None:intergenic 30.0%
AATTCTTGATCAGCACTAAT+GGG + chr1.2:20578758-20578777 None:intergenic 30.0%
AATTGTGATGACACACAAAT+AGG - chr1.2:20580934-20580953 MS.gene067204:CDS 30.0%
ACCAAAGGAGTTTATGAAAA+GGG - chr1.2:20583893-20583912 MS.gene067204:intron 30.0%
ACCCAGAAAAAATATGGTAT+GGG - chr1.2:20582773-20582792 MS.gene067204:intron 30.0%
ACTGAACAAACAAATTAGTG+AGG + chr1.2:20583787-20583806 None:intergenic 30.0%
AGAAAACCTAGTGATTTCTT+TGG + chr1.2:20582926-20582945 None:intergenic 30.0%
ATATTGTGGAGTTGAAAATG+GGG - chr1.2:20583928-20583947 MS.gene067204:intron 30.0%
ATTCATGAAAGAATGCAAAG+TGG - chr1.2:20584025-20584044 MS.gene067204:intron 30.0%
CATTGAACCTATTCTTTCTT+CGG + chr1.2:20580500-20580519 None:intergenic 30.0%
CCATTACAAGGTCATAAAAA+AGG - chr1.2:20583028-20583047 MS.gene067204:CDS 30.0%
GAAAACCTAGTGATTTCTTT+GGG + chr1.2:20582925-20582944 None:intergenic 30.0%
GGGATATCATGAAAATATTG+TGG - chr1.2:20583914-20583933 MS.gene067204:intron 30.0%
GTTGTAAAGAAGGAATACAT+TGG - chr1.2:20583070-20583089 MS.gene067204:intron 30.0%
TAAATAACAACCTGAGAATG+TGG - chr1.2:20579496-20579515 MS.gene067204:intron 30.0%
TAATGGAACTGCAACAATAA+GGG - chr1.2:20582706-20582725 MS.gene067204:CDS 30.0%
TACCAAAGGAGTTTATGAAA+AGG - chr1.2:20583892-20583911 MS.gene067204:intron 30.0%
TACCCAGAAAAAATATGGTA+TGG - chr1.2:20582772-20582791 MS.gene067204:intron 30.0%
TACTACAATTCAGTGAAAGT+TGG + chr1.2:20581173-20581192 None:intergenic 30.0%
TATGGTACCCAGAAAAAATA+TGG - chr1.2:20582767-20582786 MS.gene067204:intron 30.0%
TATGTGGAGAAATATTGGAA+AGG - chr1.2:20581660-20581679 MS.gene067204:intron 30.0%
TGATGAAAATAGAGAAACGA+TGG + chr1.2:20579973-20579992 None:intergenic 30.0%
TGTTCAAAAAACAATAGGGT+AGG - chr1.2:20579625-20579644 MS.gene067204:intron 30.0%
TTAATGGAACTGCAACAATA+AGG - chr1.2:20582705-20582724 MS.gene067204:CDS 30.0%
TTATAACATTCACACTTCAC+AGG - chr1.2:20581361-20581380 MS.gene067204:intron 30.0%
TTATGTAATTAATCCTACCG+GGG + chr1.2:20583584-20583603 None:intergenic 30.0%
TTCTGGATTTCATTCTAACA+GGG + chr1.2:20579283-20579302 None:intergenic 30.0%
TTGTTCAGTATTAACCGTTA+TGG - chr1.2:20583798-20583817 MS.gene067204:intron 30.0%
TTTATTGCCGAAGAAAGAAT+AGG - chr1.2:20580490-20580509 MS.gene067204:intron 30.0%
TTTCACTGAATTGTAGTAAC+TGG - chr1.2:20581175-20581194 MS.gene067204:intron 30.0%
TTTCTGGATTTCATTCTAAC+AGG + chr1.2:20579284-20579303 None:intergenic 30.0%
TTTGATTGGGAAGAAAAATG+TGG - chr1.2:20579337-20579356 MS.gene067204:intron 30.0%
! AACATATTCCGGATTTTCAT+AGG - chr1.2:20581478-20581497 MS.gene067204:intron 30.0%
! GATGAGTAACTTTGTGATTT+TGG - chr1.2:20580642-20580661 MS.gene067204:CDS 30.0%
! GCATATTTTGTTCTTAGCAT+AGG - chr1.2:20580586-20580605 MS.gene067204:intron 30.0%
! GGCTCTAATAATAAGAATGA+AGG - chr1.2:20579257-20579276 MS.gene067204:intron 30.0%
! GGTCTTGTAATATAACCAAT+GGG - chr1.2:20581081-20581100 MS.gene067204:intron 30.0%
! GTTGCAATTTTATGTCTGAA+AGG - chr1.2:20582244-20582263 MS.gene067204:intron 30.0%
! TCTCTTCTTTTGGTAGATTT+AGG - chr1.2:20582139-20582158 MS.gene067204:intron 30.0%
! TTTTACCAAACTATTCAGCT+TGG - chr1.2:20578632-20578651 MS.gene067204:CDS 30.0%
! TTTTTGCTTCTTCCTTTTGT+TGG - chr1.2:20578996-20579015 MS.gene067204:intron 30.0%
!! ACAAAGCAAATTCACTTTTG+TGG - chr1.2:20580957-20580976 MS.gene067204:CDS 30.0%
!! CATTGGTGGATCATATTTTA+AGG - chr1.2:20581830-20581849 MS.gene067204:intron 30.0%
!! TGATGTTACTACTTTGGTTT+TGG + chr1.2:20581239-20581258 None:intergenic 30.0%
!! TTCTAGCTTACATTGTAAGA+TGG - chr1.2:20581001-20581020 MS.gene067204:CDS 30.0%
!!! ACCCATACCATATTTTTTCT+GGG + chr1.2:20582777-20582796 None:intergenic 30.0%
!!! ATTTTTTGTTCAACACCGTT+TGG + chr1.2:20581714-20581733 None:intergenic 30.0%
!!! CAACTCTTTTGATTTGTTAG+AGG - chr1.2:20579721-20579740 MS.gene067204:intron 30.0%
!!! CAAGTTGTTTTTGAATTGTC+TGG - chr1.2:20579443-20579462 MS.gene067204:intron 30.0%
!!! CCTTTTTTATGACCTTGTAA+TGG + chr1.2:20583031-20583050 None:intergenic 30.0%
!!! GAAATGCCTGATGTTTTTTA+TGG - chr1.2:20579587-20579606 MS.gene067204:intron 30.0%
!!! TGATTTTAGCTTCTGTTAAG+TGG - chr1.2:20578911-20578930 MS.gene067204:intron 30.0%
AAAAAATATGGTATGGGTGG+TGG - chr1.2:20582779-20582798 MS.gene067204:intron 35.0%
AAAGAATGCAAAGTGGAGAT+TGG - chr1.2:20584032-20584051 MS.gene067204:intron 35.0%
AAGTGATGAATCAAGTGATG+AGG - chr1.2:20581950-20581969 MS.gene067204:intron 35.0%
AAGTGGTTAAGCTTGACTTA+CGG - chr1.2:20578928-20578947 MS.gene067204:intron 35.0%
AATACATTGGAGGAACTTCT+AGG - chr1.2:20583083-20583102 MS.gene067204:intron 35.0%
ACACTGAGAAGGATTTGATT+GGG - chr1.2:20579324-20579343 MS.gene067204:intron 35.0%
ACTGGACAGTAATAAAGTCT+TGG - chr1.2:20581305-20581324 MS.gene067204:intron 35.0%
ACTTACCAAGAAATAGCCAT+TGG + chr1.2:20582577-20582596 None:intergenic 35.0%
ACTTTATTACTGTCCAGTAC+AGG + chr1.2:20581303-20581322 None:intergenic 35.0%
ATGACTCAATCTTATGCCAA+TGG - chr1.2:20582558-20582577 MS.gene067204:CDS 35.0%
CAAAAAACAATAGGGTAGGA+AGG - chr1.2:20579629-20579648 MS.gene067204:intron 35.0%
CAACACCGTTTGGAAATTTA+AGG + chr1.2:20581704-20581723 None:intergenic 35.0%
CAATTCTTGATCAGCACTAA+TGG + chr1.2:20578759-20578778 None:intergenic 35.0%
CAGAAAAAATATGGTATGGG+TGG - chr1.2:20582776-20582795 MS.gene067204:intron 35.0%
CATTAACAGCTTCAGATGTT+AGG + chr1.2:20582515-20582534 None:intergenic 35.0%
CCAAAGGAGTTTATGAAAAG+GGG - chr1.2:20583894-20583913 MS.gene067204:intron 35.0%
CGAAGAAAGAATAGGTTCAA+TGG - chr1.2:20580498-20580517 MS.gene067204:intron 35.0%
CTTCCCAGTTAAATCATTTC+TGG + chr1.2:20579300-20579319 None:intergenic 35.0%
GACATTGTTAACTGATGCTA+GGG + chr1.2:20581453-20581472 None:intergenic 35.0%
GGGTTTGTCGAAAGAATAAA+TGG + chr1.2:20578738-20578757 None:intergenic 35.0%
GTAAAGAAGGAATACATTGG+AGG - chr1.2:20583073-20583092 MS.gene067204:intron 35.0%
TACACTGAGAAGGATTTGAT+TGG - chr1.2:20579323-20579342 MS.gene067204:intron 35.0%
TCTCTATAAATGACCTGTAC+TGG - chr1.2:20581287-20581306 MS.gene067204:intron 35.0%
TGACATTGTTAACTGATGCT+AGG + chr1.2:20581454-20581473 None:intergenic 35.0%
TGCTTCTGATCAGATTTACA+AGG + chr1.2:20581125-20581144 None:intergenic 35.0%
TGGAGAGAAATGGTGATATT+TGG - chr1.2:20581742-20581761 MS.gene067204:intron 35.0%
TGTGCTAACTGTAAGATCTT+GGG - chr1.2:20579206-20579225 MS.gene067204:intron 35.0%
TGTGTTTATGCATGTACAGA+AGG - chr1.2:20583508-20583527 MS.gene067204:intron 35.0%
TGTTCTCTTGAAAACTCACT+TGG + chr1.2:20582674-20582693 None:intergenic 35.0%
! AATGTGGAGAATAACTTGTC+TGG - chr1.2:20579353-20579372 MS.gene067204:intron 35.0%
! AGAGGAATACCCTTTACTTT+TGG + chr1.2:20583115-20583134 None:intergenic 35.0%
! CGGTCTTGTAATATAACCAA+TGG - chr1.2:20581080-20581099 MS.gene067204:intron 35.0%
! GAAAACTCACCTGAGAATTT+TGG + chr1.2:20582119-20582138 None:intergenic 35.0%
! GTGAGTTTTCTCTCTTCTTT+TGG - chr1.2:20582129-20582148 MS.gene067204:intron 35.0%
! TTGTGAAGAACTAGTGTTGA+AGG + chr1.2:20579704-20579723 None:intergenic 35.0%
!! ATATTTTGGGTGGAGAGAAA+TGG - chr1.2:20581732-20581751 MS.gene067204:intron 35.0%
!! CAATAAGGGTTGGTAATGAA+AGG - chr1.2:20582720-20582739 MS.gene067204:intron 35.0%
!! GAATACCCTTTACTTTTGGA+TGG + chr1.2:20583111-20583130 None:intergenic 35.0%
!! GTTAAGTCTGTTTTTCTCTC+AGG + chr1.2:20581403-20581422 None:intergenic 35.0%
!! TGGTAAGAGTGTTGTAAAGA+AGG - chr1.2:20583060-20583079 MS.gene067204:intron 35.0%
!! TTATGCCAATGGCTATTTCT+TGG - chr1.2:20582569-20582588 MS.gene067204:CDS 35.0%
!!! CACCCATACCATATTTTTTC+TGG + chr1.2:20582778-20582797 None:intergenic 35.0%
!!! CTTTGGTTTTGGATTGAACT+TGG + chr1.2:20581228-20581247 None:intergenic 35.0%
AAATGCCAAAGCAAGCTGAA+AGG - chr1.2:20582045-20582064 MS.gene067204:intron 40.0%
AAGTGAAGAGAGTTCAGATG+AGG - chr1.2:20582019-20582038 MS.gene067204:intron 40.0%
ACAATTCAGTGAAAGTTGGC+TGG + chr1.2:20581169-20581188 None:intergenic 40.0%
AGACTTAACACTCAAAGCCT+TGG - chr1.2:20581414-20581433 MS.gene067204:intron 40.0%
AGGAGCCATCCAAAAGTAAA+GGG - chr1.2:20583103-20583122 MS.gene067204:intron 40.0%
AGGTAGTAACAAAGTTGCCA+TGG - chr1.2:20582470-20582489 MS.gene067204:intron 40.0%
AGGTAGTGAACTTCCTTCTA+GGG - chr1.2:20579741-20579760 MS.gene067204:intron 40.0%
AGTTAATGCCTAAACTTGGC+AGG - chr1.2:20582450-20582469 MS.gene067204:intron 40.0%
ATGGCAGATTAAGGGATCAA+AGG - chr1.2:20581047-20581066 MS.gene067204:CDS 40.0%
CAGAGATAGAACTGCTAACA+AGG + chr1.2:20579526-20579545 None:intergenic 40.0%
CATAAAAAAGGGGTCTCTTG+TGG - chr1.2:20583040-20583059 MS.gene067204:CDS 40.0%
CATGTTGGAATTGATGTGTC+TGG - chr1.2:20579473-20579492 MS.gene067204:intron 40.0%
CCGAAACAAGAAGAAAGAAG+CGG - chr1.2:20580077-20580096 MS.gene067204:intron 40.0%
CTCATGCTCAGTTATAGGTT+AGG - chr1.2:20579126-20579145 MS.gene067204:intron 40.0%
GACTTACGGTTTCTGCTTAA+TGG - chr1.2:20578942-20578961 MS.gene067204:intron 40.0%
GAGGGTTCCTAAGATATATG+TGG - chr1.2:20581644-20581663 MS.gene067204:intron 40.0%
GCAAACTCATGCTCAGTTAT+AGG - chr1.2:20579121-20579140 MS.gene067204:intron 40.0%
GCATACACTCAAAAACCCAT+TGG + chr1.2:20581099-20581118 None:intergenic 40.0%
GTAGTGTGTTTACCAGTTCT+AGG + chr1.2:20578670-20578689 None:intergenic 40.0%
GTGTGCTAACTGTAAGATCT+TGG - chr1.2:20579205-20579224 MS.gene067204:intron 40.0%
GTGTTTACGCATTTGCCTTA+TGG - chr1.2:20578882-20578901 MS.gene067204:intron 40.0%
TAGCTTCACTACCATTTCCA+TGG + chr1.2:20578601-20578620 None:intergenic 40.0%
TAGGAGCCATCCAAAAGTAA+AGG - chr1.2:20583102-20583121 MS.gene067204:intron 40.0%
TCCTTCTCCTTCATGATTAC+CGG + chr1.2:20579680-20579699 None:intergenic 40.0%
TGAAAATGGGGAGAAAGTCA+TGG - chr1.2:20583940-20583959 MS.gene067204:intron 40.0%
TGAGAGTTGTCAACAATGAC+AGG + chr1.2:20579551-20579570 None:intergenic 40.0%
TGGCAAGAGAAAACTGAGTA+TGG - chr1.2:20582076-20582095 MS.gene067204:intron 40.0%
TGGCAGATTAAGGGATCAAA+GGG - chr1.2:20581048-20581067 MS.gene067204:CDS 40.0%
TGGGAAGATATACACTGAGA+AGG - chr1.2:20579313-20579332 MS.gene067204:intron 40.0%
TGTTACTACCTGCCAAGTTT+AGG + chr1.2:20582461-20582480 None:intergenic 40.0%
TGTTTCACCGGTAATCATGA+AGG - chr1.2:20579670-20579689 MS.gene067204:intron 40.0%
TTAGTAGAAGCGAGAAACCA+AGG + chr1.2:20579040-20579059 None:intergenic 40.0%
TTCTTCCTCCAATATTCCTG+TGG + chr1.2:20579164-20579183 None:intergenic 40.0%
TTGTCTGGCAAACAACAAAC+TGG - chr1.2:20579398-20579417 MS.gene067204:intron 40.0%
TTGTCTGGTAAGACACATGT+TGG - chr1.2:20579458-20579477 MS.gene067204:intron 40.0%
TTTCGTGAAGAACAAAACCC+CGG - chr1.2:20583564-20583583 MS.gene067204:intron 40.0%
! CCCCTTTTCATAAACTCCTT+TGG + chr1.2:20583897-20583916 None:intergenic 40.0%
! CCGCTTCTTTCTTCTTGTTT+CGG + chr1.2:20580080-20580099 None:intergenic 40.0%
! GAAGTGAGTGTGAGGTATTA+TGG - chr1.2:20582749-20582768 MS.gene067204:intron 40.0%
! TAACTTGTCTGGCAAGAAAC+AGG - chr1.2:20579364-20579383 MS.gene067204:intron 40.0%
! TGATGATGTGACTGTTTCAC+CGG - chr1.2:20579658-20579677 MS.gene067204:intron 40.0%
!! ACTCACCTGAGAATTTTGGT+TGG + chr1.2:20582115-20582134 None:intergenic 40.0%
!! AGTTTGTTGTTTGCCAGACA+AGG + chr1.2:20579399-20579418 None:intergenic 40.0%
!! CAAACTGGTATTGACTTGTC+TGG - chr1.2:20579413-20579432 MS.gene067204:intron 40.0%
!! CTTTGGGCTTGGTTTGTTTA+TGG + chr1.2:20582909-20582928 None:intergenic 40.0%
!! TTTTCTAGCCTTCTTCACCA+TGG + chr1.2:20582490-20582509 None:intergenic 40.0%
!!! CTCACCTGAGAATTTTGGTT+GGG + chr1.2:20582114-20582133 None:intergenic 40.0%
ACAAGGATGTCCACATTCTC+AGG + chr1.2:20579509-20579528 None:intergenic 45.0%
ACCACCCAACCAAAATTCTC+AGG - chr1.2:20582107-20582126 MS.gene067204:intron 45.0%
ACCATTTCCATGGTGAACAC+CGG + chr1.2:20578591-20578610 None:intergenic 45.0%
ACCGGTAATCATGAAGGAGA+AGG - chr1.2:20579676-20579695 MS.gene067204:intron 45.0%
ACTCGCCAAGCTGAATAGTT+TGG + chr1.2:20578640-20578659 None:intergenic 45.0%
ACTGTCTTCACCTTCTTCAG+TGG + chr1.2:20581979-20581998 None:intergenic 45.0%
ACTTGCCACAGGAATATTGG+AGG - chr1.2:20579156-20579175 MS.gene067204:CDS 45.0%
ATCAGAGTCTTTGTGGCTGT+AGG - chr1.2:20583982-20584001 MS.gene067204:intron 45.0%
CAAACGGTTGCGCATTGAAT+CGG + chr1.2:20579895-20579914 None:intergenic 45.0%
CAAAGCAAGCTGAAAGGACA+AGG - chr1.2:20582051-20582070 MS.gene067204:intron 45.0%
CAAAGTTGCCATGGTGAAGA+AGG - chr1.2:20582479-20582498 MS.gene067204:intron 45.0%
CAAGCTGAAAGGACAAGGAA+TGG - chr1.2:20582056-20582075 MS.gene067204:intron 45.0%
CATGGAACAACGACCCTAAA+CGG + chr1.2:20579931-20579950 None:intergenic 45.0%
CCAAGCCCAAAGAAATCACT+AGG - chr1.2:20582917-20582936 MS.gene067204:intron 45.0%
CCTAGTGATTTCTTTGGGCT+TGG + chr1.2:20582920-20582939 None:intergenic 45.0%
CGAGTTGCAAAACCTAGAAC+TGG - chr1.2:20578655-20578674 MS.gene067204:CDS 45.0%
GAGGTAGTGAACTTCCTTCT+AGG - chr1.2:20579740-20579759 MS.gene067204:intron 45.0%
GATGCTAGGGAGTGAGTATT+GGG + chr1.2:20581440-20581459 None:intergenic 45.0%
GGAACTGCAACAATAAGGGT+TGG - chr1.2:20582710-20582729 MS.gene067204:intron 45.0%
GGATCAAAGGGAAAGACACA+CGG - chr1.2:20581060-20581079 MS.gene067204:CDS 45.0%
GTATCTGCAGTGTGTACCAA+AGG - chr1.2:20583878-20583897 MS.gene067204:intron 45.0%
TACAGAAGGTCGTGATGTGA+AGG - chr1.2:20583522-20583541 MS.gene067204:intron 45.0%
TCAGAGTCTTTGTGGCTGTA+GGG - chr1.2:20583983-20584002 MS.gene067204:intron 45.0%
TGAAGAGAGTTCAGATGAGG+TGG - chr1.2:20582022-20582041 MS.gene067204:intron 45.0%
TGATGCTAGGGAGTGAGTAT+TGG + chr1.2:20581441-20581460 None:intergenic 45.0%
TGCACTTGCCACAGGAATAT+TGG - chr1.2:20579153-20579172 MS.gene067204:CDS 45.0%
! CTTGTCCTTTCAGCTTGCTT+TGG + chr1.2:20582053-20582072 None:intergenic 45.0%
! GAAGGAGCACAAGACATTCA+AGG - chr1.2:20583540-20583559 MS.gene067204:intron 45.0%
! GGAAATGGTAGTGAAGCTAG+AGG - chr1.2:20578602-20578621 MS.gene067204:CDS 45.0%
! TAGTGAACTTCCTTCTAGGG+AGG - chr1.2:20579744-20579763 MS.gene067204:intron 45.0%
!! AATATGGTATGGGTGGTGGA+TGG - chr1.2:20582783-20582802 MS.gene067204:intron 45.0%
!! CAGGTTGATGATTCCTTGTC+TGG - chr1.2:20579383-20579402 MS.gene067204:intron 45.0%
!! GGTTGGTAATGAAAGGAGTG+TGG - chr1.2:20582727-20582746 MS.gene067204:intron 45.0%
!! GTGAAAGAAACCGCTGATTC+CGG - chr1.2:20580035-20580054 MS.gene067204:CDS 45.0%
!! GTGGTGGATGGAAAACATTC+AGG - chr1.2:20582795-20582814 MS.gene067204:intron 45.0%
!!! ACCTGAGAATTTTGGTTGGG+TGG + chr1.2:20582111-20582130 None:intergenic 45.0%
!! AAAAATAATAAATACTTAAT+TGG - chr1.2:20582377-20582396 MS.gene067204:intron 5.0%
!! ATTATATATATTTCTTAATT+TGG - chr1.2:20583213-20583232 MS.gene067204:intron 5.0%
AGACTTCACTCCTCAAGCTC+TGG - chr1.2:20579097-20579116 MS.gene067204:intron 50.0%
AGCTTGAGGAGTGAAGTCTC+TGG + chr1.2:20579096-20579115 None:intergenic 50.0%
AGTCTTTGTGGCTGTAGGGT+CGG - chr1.2:20583987-20584006 MS.gene067204:intron 50.0%
CGATTCAATGCGCAACCGTT+TGG - chr1.2:20579893-20579912 MS.gene067204:intron 50.0%
GACAAACGCACCACCGTTTA+GGG - chr1.2:20579915-20579934 MS.gene067204:intron 50.0%
GATGAGGAAGCCACTGAAGA+AGG - chr1.2:20581966-20581985 MS.gene067204:intron 50.0%
GCACTTGGCTGAACTGCAAT+CGG + chr1.2:20580140-20580159 None:intergenic 50.0%
GGAATCTTTGCTACTGAGCG+TGG + chr1.2:20579874-20579893 None:intergenic 50.0%
GGAGGCTAAGTTACCTGACA+TGG - chr1.2:20579762-20579781 MS.gene067204:intron 50.0%
GGCTGCTGCTATCAGTTCAA+AGG - chr1.2:20579783-20579802 MS.gene067204:intron 50.0%
GGTAACTTAGCCTCCCTAGA+AGG + chr1.2:20579757-20579776 None:intergenic 50.0%
GTGAAGAACAAAACCCCGGT+AGG - chr1.2:20583568-20583587 MS.gene067204:intron 50.0%
TCCGGTGTTCACCATGGAAA+TGG - chr1.2:20578587-20578606 MS.gene067204:CDS 50.0%
TGAGTTTGCACCAGAGCTTG+AGG + chr1.2:20579110-20579129 None:intergenic 50.0%
! CGTTTAGGGTCGTTGTTCCA+TGG - chr1.2:20579929-20579948 MS.gene067204:intron 50.0%
!! AAAGAAACCGCTGATTCCGG+CGG - chr1.2:20580038-20580057 MS.gene067204:CDS 50.0%
!! AATGAGTACAGAGAGCGCCA+TGG + chr1.2:20579949-20579968 None:intergenic 50.0%
!! TAGGTTGATGCACTTGCCAC+AGG - chr1.2:20579145-20579164 MS.gene067204:CDS 50.0%
CGGTGGTGCGTTTGTCCAAA+CGG + chr1.2:20579911-20579930 None:intergenic 55.0%
CTGATAGCAGCAGCCATGTC+AGG + chr1.2:20579778-20579797 None:intergenic 55.0%
GCTGTAGGGTCGGTAAAGGT+TGG - chr1.2:20583997-20584016 MS.gene067204:intron 55.0%
GGAACAACGACCCTAAACGG+TGG + chr1.2:20579928-20579947 None:intergenic 55.0%
GGACAAACGCACCACCGTTT+AGG - chr1.2:20579914-20579933 MS.gene067204:intron 55.0%
GGAGTGTGGAAGTGAGTGTG+AGG - chr1.2:20582741-20582760 MS.gene067204:intron 55.0%
TGCAGTTCAGCCAAGTGCAG+CGG - chr1.2:20580142-20580161 MS.gene067204:CDS 55.0%
TGTGGCTGTAGGGTCGGTAA+AGG - chr1.2:20583993-20584012 MS.gene067204:intron 55.0%
!! AGGGAGTGAGTATTGGGCCA+AGG + chr1.2:20581434-20581453 None:intergenic 55.0%
AGCCAAGTGCAGCGGCAGTT+CGG - chr1.2:20580150-20580169 MS.gene067204:CDS 60.0%
AGTGCAGCGGCAGTTCGGTA+AGG - chr1.2:20580155-20580174 MS.gene067204:CDS 60.0%
TACCGAACTGCCGCTGCACT+TGG + chr1.2:20580155-20580174 None:intergenic 60.0%
! TTTTCCTCTTCCGCTGCCGC+CGG + chr1.2:20580057-20580076 None:intergenic 60.0%
GATTCCGGCGGCAGCGGAAG+AGG - chr1.2:20580050-20580069 MS.gene067204:intron 70.0%
TCCGCTGCCGCCGGAATCAG+CGG + chr1.2:20580048-20580067 None:intergenic 70.0%
!! ACCGCTGATTCCGGCGGCAG+CGG - chr1.2:20580044-20580063 MS.gene067204:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 20578584 20584145 20578584 ID=MS.gene067204
chr1.2 mRNA 20578584 20584145 20578584 ID=MS.gene067204.t1;Parent=MS.gene067204
chr1.2 exon 20584053 20584145 20584053 ID=MS.gene067204.t1.exon1;Parent=MS.gene067204.t1
chr1.2 CDS 20584053 20584145 20584053 ID=cds.MS.gene067204.t1;Parent=MS.gene067204.t1
chr1.2 exon 20583235 20583508 20583235 ID=MS.gene067204.t1.exon2;Parent=MS.gene067204.t1
chr1.2 CDS 20583235 20583508 20583235 ID=cds.MS.gene067204.t1;Parent=MS.gene067204.t1
chr1.2 exon 20582987 20583078 20582987 ID=MS.gene067204.t1.exon3;Parent=MS.gene067204.t1
chr1.2 CDS 20582987 20583078 20582987 ID=cds.MS.gene067204.t1;Parent=MS.gene067204.t1
chr1.2 exon 20582558 20582727 20582558 ID=MS.gene067204.t1.exon4;Parent=MS.gene067204.t1
chr1.2 CDS 20582558 20582727 20582558 ID=cds.MS.gene067204.t1;Parent=MS.gene067204.t1
chr1.2 exon 20581205 20581229 20581205 ID=MS.gene067204.t1.exon5;Parent=MS.gene067204.t1
chr1.2 CDS 20581205 20581229 20581205 ID=cds.MS.gene067204.t1;Parent=MS.gene067204.t1
chr1.2 exon 20580601 20581084 20580601 ID=MS.gene067204.t1.exon6;Parent=MS.gene067204.t1
chr1.2 CDS 20580601 20581084 20580601 ID=cds.MS.gene067204.t1;Parent=MS.gene067204.t1
chr1.2 exon 20580139 20580257 20580139 ID=MS.gene067204.t1.exon7;Parent=MS.gene067204.t1
chr1.2 CDS 20580139 20580257 20580139 ID=cds.MS.gene067204.t1;Parent=MS.gene067204.t1
chr1.2 exon 20579941 20580064 20579941 ID=MS.gene067204.t1.exon8;Parent=MS.gene067204.t1
chr1.2 CDS 20579941 20580064 20579941 ID=cds.MS.gene067204.t1;Parent=MS.gene067204.t1
chr1.2 exon 20579144 20579202 20579144 ID=MS.gene067204.t1.exon9;Parent=MS.gene067204.t1
chr1.2 CDS 20579144 20579202 20579144 ID=cds.MS.gene067204.t1;Parent=MS.gene067204.t1
chr1.2 exon 20578768 20578841 20578768 ID=MS.gene067204.t1.exon10;Parent=MS.gene067204.t1
chr1.2 CDS 20578768 20578841 20578768 ID=cds.MS.gene067204.t1;Parent=MS.gene067204.t1
chr1.2 exon 20578584 20578725 20578584 ID=MS.gene067204.t1.exon11;Parent=MS.gene067204.t1
chr1.2 CDS 20578584 20578725 20578584 ID=cds.MS.gene067204.t1;Parent=MS.gene067204.t1
Gene Sequence

>MS.gene067204

ATGTCCGGTGTTCACCATGGAAATGGTAGTGAAGCTAGAGGAAAGCACTTTTACCAAACTATTCAGCTTGGCGAGTTGCAAAACCTAGAACTGGTAAACACACTACACTCACTTCATTCTTTCGATTATAGATAGATAGATTAGGAATGTACCATTTATTCTTTCGACAAACCCATTAGTGCTGATCAAGAATTGCATGTAAATTTTGGCTTTTTTCGCTTATTTAACAAATTATTGTTGATTTGATCATGTATATTCTTGTTTTTGGCTTTCTTGTTCATCTTCTATTAATTGCTTGGTGTTTACGCATTTGCCTTATGGTTTTGTTGATTTTAGCTTCTGTTAAGTGGTTAAGCTTGACTTACGGTTTCTGCTTAATGGTTAAATTTTTACCCTTTCTTGGCTTTCATGATTTTTGCTTCTTCCTTTTGTTGGTTAAGTACTAATAATTGTCCTTGGTTTCTCGCTTCTACTAATGTCTTATGAAAGTTTTGGATTTTATTGCTGGACCAGAGACTTCACTCCTCAAGCTCTGGTGCAAACTCATGCTCAGTTATAGGTTAGGTTGATGCACTTGCCACAGGAATATTGGAGGAAGAAGACTCTTTATGAGATTGCTTAGTGTGCTAACTGTAAGATCTTGGGACATAATCTTCAAAATTGCATGAAATTAGGCTCTAATAATAAGAATGAAGGCCCTGTTAGAATGAAATCCAGAAATGATTTAACTGGGAAGATATACACTGAGAAGGATTTGATTGGGAAGAAAAATGTGGAGAATAACTTGTCTGGCAAGAAACAGGTTGATGATTCCTTGTCTGGCAAACAACAAACTGGTATTGACTTGTCTGGCAAGAAACAAGTTGTTTTTGAATTGTCTGGTAAGACACATGTTGGAATTGATGTGTCTGGTAAATAACAACCTGAGAATGTGGACATCCTTGTTAGCAGTTCTATCTCTGAACCTGTCATTGTTGACAACTCTCAACACTCTGATGCAAATGAAATGCCTGATGTTTTTTATGGTTTAGATCATTTTATTGTTCAAAAAACAATAGGGTAGGAAGGAACTAGTGATGATGTGACTGTTTCACCGGTAATCATGAAGGAGAAGGATCCTTCAACACTAGTTCTTCACAACTCTTTTGATTTGTTAGAGGTAGTGAACTTCCTTCTAGGGAGGCTAAGTTACCTGACATGGCTGCTGCTATCAGTTCAAAGGATATTTTCATTTAGTTTTTTTTTTTGAGGGACATTTAGTTTAATTTTCTATCTCTGTTTTCGATTCCACGCTCAGTAGCAAAGATTCCGATTCAATGCGCAACCGTTTGGACAAACGCACCACCGTTTAGGGTCGTTGTTCCATGGCGCTCTCTGTACTCATTTCCATCGTTTCTCTATTTTCATCAAATAAATAGAGATTCAATGGTGAAGATAGACTTCGATCAGAAGTGAAAGAAACCGCTGATTCCGGCGGCAGCGGAAGAGGAAAACCGAAACAAGAAGAAAGAAGCGGAAATGTCTTCATCTTCATCGAACATACATTTGTTGCTCCGATTGCAGTTCAGCCAAGTGCAGCGGCAGTTCGGTAAGGAAACTCTTTTTTCTTCTTCTTCTCTTTCCTAATTTATGTATGATTATTGAGTATTGTATTGTAATTCTTCAATTTAGTTTTTGTGATACTGTTTTTGAATTGGTTTTTGTGATAATTGAGCAATTTTCTGTGATAGTGTTCATATACCTATTTGTTATCTGTAAGTATTGAGATTAGTAAACAAATTAAAAAACTGAAATTCTTTTCTGCTTAGCGAAACAAAAGAACAGAATAAGATTTAAGAACTGAGGAGACTAATTCATCTCAGTTATTGATGTTCCTTTTCATTTACTAGTAAGCAATTGTTTGGATTTTATTGCCGAAGAAAGAATAGGTTCAATGGATATTATAGTTAGGAGTTTCTAGTTTGTCGATGAAATAACTTAGCTATGTCACTGTGATAATAGTGCATATTTTGTTCTTAGCATAGGATATGCAATGTTGAGATACATGCATTCTTATTTGATGAGTAACTTTGTGATTTTGGAATATCTAAAAAAAAACTAGTGAGATTGATTCTGTGTTCTGCATGTGAAATAGACACTTAAAAAAGTATATAAAAAAAGAATATAGACATTAAGTTCTGATTAATTAAGGATTAGGAATCATAAGCCTAACAACGAAGTTTATATTTATAATAGGAAAATGCTTACAAGCCTAAAAATGTTTATATTTGCAATTTGTAATTTTGAAATATCTAAAATAACTAGGGAGATTGTATCTGTGTGATTGTGTGTTCTGTTCAATGACAAATGCAATTGTGATGACACACAAATAGGACAAAGCAAATTCACTTTTGTGGCAAATTAAAAGTTGTTTCTATTTCTAGCTTACATTGTAAGATGGACCAGACAACACCTTATATAAAAATGGCAGATTAAGGGATCAAAGGGAAAGACACACGGTCTTGTAATATAACCAATGGGTTTTTGAGTGTATGCATGCCTTGTAAATCTGATCAGAAGCATGAAGCTTGAATAAATTATAGCCAGCCAACTTTCACTGAATTGTAGTAACTGGCAAACACTTTTTATTGTGTCATAAATGCCAAGTTCAATCCAAAACCAAAGTAGTAACATCAGAAAAAATTAGATAGAAAATGCATCATTTCTCTATAAATGACCTGTACTGGACAGTAATAAAGTCTTGGTTTTCTACCATACTACAAAAAATATCTTTAACTTTATAACATTCACACTTCACAGGATTTATAACATTGAGACCTGAGAGAAAAACAGACTTAACACTCAAAGCCTTGGCCCAATACTCACTCCCTAGCATCAGTTAACAATGTCATTTCAACATATTCCGGATTTTCATAGGATAATCTTGCAAGATAAGAAACTTGTAAGCATATTAGAAATAATTATTTTGCATATTTACATTATGTTTCATTTATAATGTATTATTTATGTATCATTGTTTTTAAAAATGTTAATGTATGATTTTTGAATTTCTTTATTGCAGAGGGTTCCTAAGATATATGTGGAGAAATATTGGAAAGGAATATCAAACCCTATATTCCTTAAATTTCCAAACGGTGTTGAACAAAAAATATTTTGGGTGGAGAGAAATGGTGATATTTGGTTTCAAAAAAATTGGGAAAGTTTTGCAAAGTCTTTCAAATATGGATATCTCTTAACTTTCAAATTCATTGGTGGATCATATTTTAAGGTTAAGATATTTGGTGCCAATACTTTAGAAATAAATTATGCCAATATCAAATCAGTTGATGAATCAAGTGATGCTGAAGCTACAAAAGAAGCTAAAGAAAGTGATGAATCAAGTGATGAGGAAGCCACTGAAGAAGGTGAAGACAGTGATGAAGAGAGTGATGAATCAAGTGAAGAGAGTTCAGATGAGGTGGAAATGCCAAAGCAAGCTGAAAGGACAAGGAATGGCAAGAGAAAACTGAGTATGGATTTTGACACCACCCAACCAAAATTCTCAGGTGAGTTTTCTCTCTTCTTTTGGTAGATTTAGGCTTGTCTGTTACTCTATTTTTTTAAAAATAGATAACTTGTTTTTATTGAAAAGAATTACTTTTAAGAGTTATTGAATGGTTTGTTGCAATTTTATGTCTGAAAGGTTGAAAATCTATGAAAGAAAAATGTCTTGAAGTGCTCAATAGATACATTTTATATAAAAATATGTGATTATTTTTTGGGTAGCAAAAATATGTAATTTTTATTATGATAAAAAAATAATAAATACTTAATTGGTTTTCTTAAAATCTTCTAAAAACAATATCCAAATCAAATGTATAATAAATAGTTAATGCCTAAACTTGGCAGGTAGTAACAAAGTTGCCATGGTGAAGAAGGCTAGAAAATACCTAACATCTGAAGCTGTTAATGAGAATCCCTCTTTTGAAGTTATAATGACTCAATCTTATGCCAATGGCTATTTCTTGGTAAGTTTGCTATACAAAGTATCTATTAATTTTAGCTTTAATTATTATATCTAATAAAACATGATTTGAAACAGTGGATACCAAGTGAGTTTTCAAGAGAACACTTGAAAGATTTTAATGGAACTGCAACAATAAGGGTTGGTAATGAAAGGAGTGTGGAAGTGAGTGTGAGGTATTATGGTACCCAGAAAAAATATGGTATGGGTGGTGGATGGAAAACATTCAGGCAAAAATATAATTTGCAAGTTGATGATGTTTGTAAATTTGAGATGATTCAAGGGAGACCAAGTTCATTCATTGTTACTATTACTCGTGCCATAAACAAACCAAGCCCAAAGAAATCACTAGGTTTTCTTTCTTTCTTTTTTATTTAGTTTTTTGTATGTTATAATTTGATATTTGATTAACATCTATTTTTCTTTATTTTTTTTTTTTATCCATTACAAGGTCATAAAAAAGGGGTCTCTTGTGGTAAGAGTGTTGTAAAGAAGGAATACATTGGAGGAACTTCTAGGAGCCATCCAAAAGTAAAGGGTATTCCTCTAACTTTTTTAATGTTTTTAGATTTTAAAATTGTAGAGGGTTCTGAAATATTTGTAACTTTTAAATAGTCCTTTGAACTATTATATATATTTCTTAATTTGGTCTTCAAACTTATGAATGATTTATAAGGTTCTTGAACTAAGTTTTTAATTGTATATCGTTGATCTTTAATTTTAAATACCTGTGAATTGAAATATTTTTTATGTTCATATAGAACTTTTAAAAAGTTCTTTGAAATTTTTGATAGTTAGTGATTGACCTAACTTATCCATCTTTCAGTTTCTTCTTTTAGTTTAGAACCTAACTATAAATCTATTCAAATATATCTAAATTTTTTGGGTGTTAAAAAATTAGATTAGATTAGATACTATCATTGTGTTTATGCATGTACAGAAGGTCGTGATGTGAAGGAGCACAAGACATTCAAGGTTTTCGTGAAGAACAAAACCCCGGTAGGATTAATTACATAAAAATATATGCTAAATTTCATATCTAGTCACTTAACTATTTATGTGATTTCATATTTGTCCCATAATTAATTTTCGTTCAATTTAGTGTCATAAGTTTTCTCCGTTAGTCAAGTTAGTCCTATTCTATTAACTTTTAACCTCTAATGTATAATAAAGTGGACACACAATGTATGTGAAAATCCTCACTAATTTGTTTGTTCAGTATTAACCGTTATGGTTAGATTTATAGATACATATGTTAGAACTACATGATAAATAAATAATATTTTTGTTTGTATCTGCAGTGTGTACCAAAGGAGTTTATGAAAAGGGGATATCATGAAAATATTGTGGAGTTGAAAATGGGGAGAAAGTCATGGTACGTAAAAGTTAATTATTATCAGAGTCTTTGTGGCTGTAGGGTCGGTAAAGGTTGGAGAAAATTCATGAAAGAATGCAAAGTGGAGATTGGAGATACTTGTCTCTTCAAGTTAATTGATGAAAGAAATTTTGTGTTTAATGTTTCAATTGTAGGAAAGAATCCATTAGCTGTGCTTCTTTAA
Protein sequence

>MS.gene067204.t1

MSGVHHGNGSEARGKHFYQTIQLGELQNLELILGHNLQNCMKLGSNNKNEGPVRMKSRNDLTGKIYTEKDLIGKKNVENNLSGKKQVDDSLSGKQQTGIDLSGKKQVVFELSGKTHVGIDVSGTSDDVTVSPVIMKEKDPSTLVLHNSFDLLERFNGEDRLRSEVKETADSGGSGRGKPKQEERSGNVFIFIEHTFVAPIAVQPSAAAVRIILQDKKLRVPKIYVEKYWKGISNPIFLKFPNGVEQKIFWVERNGDIWFQKNWESFAKSFKYGYLLTFKFIGGSYFKVKIFGANTLEINYANIKSVDESSDAEATKEAKESDESSDEEATEEGEDSDEESDESSEESSDEVEMPKQAERTRNGKRKLSMDFDTTQPKFSGSNKVAMVKKARKYLTSEAVNENPSFEVIMTQSYANGYFLWIPSEFSREHLKDFNGTATIRVGNERSVEVSVRYYGTQKKYEGRDVKEHKTFKVFVKNKTPCVPKEFMKRGYHENIVELKMGRKSWVGKGWRKFMKECKVEIGDTCLFKLIDERNFVFNVSIVGKNPLAVLL