AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073655

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073655.t1 MTR_6g061070 73.099 342 75 4 8 342 7 338 1.64e-174 493
MS.gene073655.t1 MTR_1g035520 57.616 302 113 7 34 325 87 383 4.73e-103 308
MS.gene073655.t1 MTR_1g033740 63.452 197 48 3 1 194 1 176 2.58e-80 243
MS.gene073655.t1 MTR_1g035480 63.684 190 44 3 5 194 5 169 2.19e-78 238
MS.gene073655.t1 MTR_1g035500 59.487 195 55 3 4 194 6 180 2.99e-75 230
MS.gene073655.t1 MTR_1g035510 44.980 249 106 8 34 278 1 222 3.18e-58 187
MS.gene073655.t1 MTR_1g035470 61.006 159 36 3 34 192 1 133 1.68e-56 181
MS.gene073655.t1 MTR_1g035640 39.871 311 153 9 28 337 14 291 1.03e-54 186
MS.gene073655.t1 MTR_1g035620 38.511 309 147 8 19 324 9 277 8.93e-52 177
MS.gene073655.t1 MTR_1g035570 36.076 316 169 9 28 339 14 300 1.27e-45 160
MS.gene073655.t1 MTR_1g050845 34.853 307 141 9 23 324 13 265 3.13e-41 154
MS.gene073655.t1 MTR_5g044670 30.675 326 194 10 19 338 16 315 2.33e-40 144
MS.gene073655.t1 MTR_3g098790 30.556 324 188 10 13 328 7 301 6.90e-33 125
MS.gene073655.t1 MTR_7g050720 30.031 323 190 9 18 325 9 310 1.32e-31 121
MS.gene073655.t1 MTR_1g035650 35.088 228 106 7 19 240 9 200 7.52e-30 113
MS.gene073655.t1 MTR_7g050710 28.086 324 206 6 12 328 6 309 4.10e-29 114
MS.gene073655.t1 MTR_7g050580 28.261 322 189 9 13 328 7 292 4.53e-29 114
MS.gene073655.t1 MTR_7g050560 29.283 321 187 9 13 328 7 292 1.05e-28 113
MS.gene073655.t1 MTR_7g050590 28.571 301 190 6 34 328 1 282 1.11e-27 110
MS.gene073655.t1 MTR_4g119990 25.513 341 224 10 9 339 5 325 1.64e-27 111
MS.gene073655.t1 MTR_6g043890 27.869 305 187 11 16 312 12 291 4.92e-27 109
MS.gene073655.t1 MTR_1g108780 28.000 300 194 11 35 330 13 294 3.18e-26 108
MS.gene073655.t1 MTR_3g061310 29.063 320 172 14 17 325 10 285 1.49e-25 104
MS.gene073655.t1 MTR_3g061350 31.210 314 166 16 19 324 12 283 1.66e-25 103
MS.gene073655.t1 MTR_1g035460 26.852 324 199 11 34 341 1 302 2.24e-23 100
MS.gene073655.t1 MTR_1g035540 53.933 89 28 3 249 337 2 77 9.42e-23 92.8
MS.gene073655.t1 MTR_3g061370 27.358 318 187 14 12 324 2 280 5.65e-22 94.4
MS.gene073655.t1 MTR_3g061340 26.300 327 175 13 10 325 3 274 1.35e-21 93.2
MS.gene073655.t1 MTR_8g103940 26.875 320 197 11 17 325 37 330 2.97e-21 94.7
MS.gene073655.t1 MTR_3g061320 27.439 328 175 14 10 325 3 279 1.18e-20 90.5
MS.gene073655.t1 MTR_1g021330 23.476 328 214 9 17 312 24 346 6.94e-19 87.0
MS.gene073655.t1 MTR_3g061290 36.170 141 76 5 17 154 10 139 3.96e-17 79.3
MS.gene073655.t1 MTR_1g035490 41.818 110 59 4 224 333 97 201 4.48e-17 81.3
MS.gene073655.t1 MTR_1g021360 24.915 293 183 12 31 314 194 458 4.55e-16 79.3
MS.gene073655.t1 MTR_3g061330 36.364 132 73 5 17 145 10 133 5.64e-16 77.0
MS.gene073655.t1 MTR_1g035440 39.806 103 58 2 16 114 12 114 9.73e-16 76.3
MS.gene073655.t1 MTR_1g021440 23.708 329 214 13 17 312 21 345 7.26e-15 75.1
MS.gene073655.t1 MTR_3g061220 36.441 118 59 3 17 132 10 113 7.94e-15 70.5
MS.gene073655.t1 MTR_1g021440 23.343 347 211 13 17 312 21 363 9.78e-15 75.1
MS.gene073655.t1 MTR_3g005460 22.699 326 170 11 15 325 258 516 5.24e-14 73.2
MS.gene073655.t1 MTR_1g021435 21.084 332 219 10 17 313 20 343 1.11e-12 68.6
MS.gene073655.t1 MTR_1g021350 22.531 324 211 11 17 323 20 320 1.78e-12 67.8
MS.gene073655.t1 MTR_5g070440 30.476 105 70 2 13 114 15 119 2.62e-12 66.6
MS.gene073655.t1 MTR_3g005495 35.000 100 62 2 18 114 242 341 2.72e-12 67.8
MS.gene073655.t1 MTR_4g068320 32.576 132 84 3 19 145 6 137 4.98e-12 67.0
MS.gene073655.t1 MTR_7g050640 38.384 99 58 2 13 108 7 105 8.24e-12 62.0
MS.gene073655.t1 MTR_1g021410 23.148 324 210 13 17 313 21 332 1.32e-11 65.5
MS.gene073655.t1 MTR_1g021320 29.586 169 107 6 18 177 178 343 4.44e-11 64.7
MS.gene073655.t1 MTR_1g034210 22.129 357 222 13 19 325 7 357 8.56e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073655.t1 AT3G18990 24.324 333 219 10 19 323 6 333 1.92e-22 96.7
MS.gene073655.t1 AT3G18990 24.324 333 219 10 19 323 6 333 3.37e-22 96.7
MS.gene073655.t1 AT4G33280 27.160 324 196 17 18 325 19 318 3.89e-13 69.7

Find 60 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGACCCATTTGGAAGTTTA+AGG 0.139491 1.1:+35284614 None:intergenic
TTTGGAAGTTTAAGGGATAT+TGG 0.281020 1.1:+35284622 None:intergenic
TGCAACGCGGTGATGGTATT+TGG 0.284893 1.1:-35284573 MS.gene073655:CDS
CTCCGGGCCTGGTTCCTTTG+TGG 0.344484 1.1:+35283123 None:intergenic
GGAATTTCGTAGAGAGGTAT+TGG 0.365580 1.1:-35284660 MS.gene073655:CDS
TTATCACCTTCAACATGATA+TGG 0.368518 1.1:+35283786 None:intergenic
AATTTGACCCTCCTTTGTAT+TGG 0.378255 1.1:+35284494 None:intergenic
GGCCTGGTTCCTTTGTGGTT+GGG 0.379936 1.1:+35283128 None:intergenic
ATGGTATTTGGCTTCAGAAT+TGG 0.387348 1.1:-35284561 MS.gene073655:CDS
GGGCCTGGTTCCTTTGTGGT+TGG 0.394485 1.1:+35283127 None:intergenic
GGTCAGCATGCAAAATGAAT+TGG 0.396575 1.1:-35284597 MS.gene073655:CDS
TGACCCATTTGGAAGTTTAA+GGG 0.399923 1.1:+35284615 None:intergenic
CCTTGAAACTTCTCCGGGCC+TGG 0.411612 1.1:+35283112 None:intergenic
AACCACAAAGGAACCAGGCC+CGG 0.431169 1.1:-35283125 MS.gene073655:CDS
ATATCCCTTAAACTTCCAAA+TGG 0.449227 1.1:-35284619 MS.gene073655:CDS
GCAATACCTTGAAACTTCTC+CGG 0.461040 1.1:+35283106 None:intergenic
ATAGTAATTGTGAATGAAAG+TGG 0.468831 1.1:+35283154 None:intergenic
TACCTCTCTACGAAATTCCT+TGG 0.476007 1.1:+35284664 None:intergenic
AAGGAACATGAGTTGAAAGT+TGG 0.478819 1.1:-35283211 MS.gene073655:CDS
TTATCGCCATATCATGTTGA+AGG 0.488274 1.1:-35283792 MS.gene073655:CDS
AGTGAAACTAGGACTCTCAT+TGG 0.512039 1.1:+35283821 None:intergenic
AGTAGCAATGCCATTTGAGT+TGG 0.513443 1.1:+35284285 None:intergenic
TTCGAAAACCAACTAGGTAT+CGG 0.513588 1.1:+35283370 None:intergenic
TAATGGAAACACAGGAGGCA+TGG 0.520474 1.1:-35283901 MS.gene073655:CDS
TGTTGAAGGTGATAATAGAT+TGG 0.520882 1.1:-35283778 MS.gene073655:intron
TATCCCTTAAACTTCCAAAT+GGG 0.521322 1.1:-35284618 MS.gene073655:CDS
TATTCTTTCGAAAACCAACT+AGG 0.522446 1.1:+35283364 None:intergenic
CCAGGCCCGGAGAAGTTTCA+AGG 0.523708 1.1:-35283112 MS.gene073655:intron
CAATACCTTGAAACTTCTCC+GGG 0.525380 1.1:+35283107 None:intergenic
TGAAACAGCCGATACCTAGT+TGG 0.537742 1.1:-35283378 MS.gene073655:intron
AAGGCAACAATTAGAAGTGT+TGG 0.542696 1.1:-35283319 MS.gene073655:CDS
AATGGAAACACAGGAGGCAT+GGG 0.543418 1.1:-35283900 MS.gene073655:CDS
TACATGAATGAGTTATTGCA+AGG 0.543984 1.1:-35283343 MS.gene073655:CDS
GTCAGCATGCAAAATGAATT+GGG 0.544595 1.1:-35284596 MS.gene073655:CDS
GTGAAACTAGGACTCTCATT+GGG 0.547777 1.1:+35283822 None:intergenic
ACTACTGCTGCTACACCTCA+AGG 0.557213 1.1:-35284265 MS.gene073655:CDS
ATCCCAACCACAAAGGAACC+AGG 0.559337 1.1:-35283130 MS.gene073655:CDS
TTTGGCTTCAGAATTGGAAG+AGG 0.566576 1.1:-35284555 MS.gene073655:CDS
GATAATTTGACAGTGAAACT+AGG 0.566923 1.1:+35283810 None:intergenic
TAGAAGTGTTGGTGAGGACA+AGG 0.567147 1.1:-35283308 MS.gene073655:CDS
AGAATTGGAAGAGGTTTGCA+TGG 0.571811 1.1:-35284546 MS.gene073655:CDS
TTGTGAATGTTAGTCCCTTG+AGG 0.580089 1.1:+35284250 None:intergenic
AATTGGGTGCAACGCGGTGA+TGG 0.587564 1.1:-35284580 MS.gene073655:CDS
TGTGCTTGCAGATGATTCCA+AGG 0.587783 1.1:-35284681 MS.gene073655:intron
TCTCACACTTCACGCGCGCG+TGG 0.595264 1.1:+35282600 None:intergenic
GCAGAGGCTAATGGAAACAC+AGG 0.596384 1.1:-35283909 MS.gene073655:intron
AACAATTAGAAGTGTTGGTG+AGG 0.601806 1.1:-35283314 MS.gene073655:CDS
TTTGCATGGTCGCTCCGATG+TGG 0.602338 1.1:-35284532 MS.gene073655:CDS
TTCCAAGGAATTTCGTAGAG+AGG 0.604264 1.1:-35284666 MS.gene073655:CDS
GAGCGTGGTAGTGAAGCTAA+AGG 0.613987 1.1:-35285569 MS.gene073655:CDS
TACTATTATCCCAACCACAA+AGG 0.624953 1.1:-35283137 MS.gene073655:CDS
GAATGAGTTATTGCAAGGGA+AGG 0.643476 1.1:-35283338 MS.gene073655:CDS
GAACAACACGGCAATGAGCG+TGG 0.647962 1.1:-35285584 MS.gene073655:CDS
CTACTGCTGCTACACCTCAA+GGG 0.654975 1.1:-35284264 MS.gene073655:CDS
ACATGAATGAGTTATTGCAA+GGG 0.661417 1.1:-35283342 MS.gene073655:CDS
GTGTTGGTGAGGACAAGGCA+TGG 0.669943 1.1:-35283303 MS.gene073655:CDS
AAACTAAAAGATCTCCACAT+CGG 0.700040 1.1:+35284518 None:intergenic
GAGGCTAATGGAAACACAGG+AGG 0.702704 1.1:-35283906 MS.gene073655:CDS
AGCATGTGGTTTGAACAACA+CGG 0.751745 1.1:-35285596 MS.gene073655:CDS
AAAATGAATTGGGTGCAACG+CGG 0.811094 1.1:-35284586 MS.gene073655:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTTATTGAATAATAAAAA+TGG + chr1.1:35282892-35282911 None:intergenic 10.0%
!! GTTTATTGAATAATAAAAAT+GGG + chr1.1:35282891-35282910 None:intergenic 10.0%
!! TAAACAGATGAATAAATAAA+AGG + chr1.1:35284035-35284054 None:intergenic 15.0%
!! TATAATTTCTTTGATTCTAT+TGG - chr1.1:35283005-35283024 MS.gene073655:intron 15.0%
!! TTATTTATTCATCTGTTTAT+GGG - chr1.1:35284036-35284055 MS.gene073655:intron 15.0%
!! TTTATTATCATTAATGGAAT+TGG - chr1.1:35283160-35283179 MS.gene073655:CDS 15.0%
!! TTTATTTATTCATCTGTTTA+TGG - chr1.1:35284035-35284054 MS.gene073655:intron 15.0%
!!! ATATTTTAAGGTTTAAATCT+TGG - chr1.1:35285242-35285261 MS.gene073655:intron 15.0%
!!! CAAATGTGTAAAATATTTTA+AGG - chr1.1:35285230-35285249 MS.gene073655:intron 15.0%
!!! TCAATCTACATTAATATTTT+GGG - chr1.1:35282845-35282864 MS.gene073655:intron 15.0%
!!! TTCAATCTACATTAATATTT+TGG - chr1.1:35282844-35282863 MS.gene073655:intron 15.0%
!! AAAACCAATGAGTATAAATT+TGG + chr1.1:35283495-35283514 None:intergenic 20.0%
!! AAGAATATACGTAAATAAAG+TGG + chr1.1:35284173-35284192 None:intergenic 20.0%
!! ACAGATAGTAATACATAAAT+GGG + chr1.1:35282747-35282766 None:intergenic 20.0%
!! AGAATATACGTAAATAAAGT+GGG + chr1.1:35284172-35284191 None:intergenic 20.0%
!! TACAGATAGTAATACATAAA+TGG + chr1.1:35282748-35282767 None:intergenic 20.0%
!! TACGGATTTATTATCATTAA+TGG - chr1.1:35283154-35283173 MS.gene073655:CDS 20.0%
!! TTAAGATTACTAGATCAAAA+AGG - chr1.1:35285285-35285304 MS.gene073655:intron 20.0%
!!! AATTTGTATGGATTAAAAAG+TGG + chr1.1:35284122-35284141 None:intergenic 20.0%
!!! ATGTACTTATGTAATTTGTA+TGG + chr1.1:35284134-35284153 None:intergenic 20.0%
!!! TTTGTTTTTAGTGTCAAAAT+GGG + chr1.1:35283126-35283145 None:intergenic 20.0%
! AAAACTAAGTTCAAATACCT+AGG + chr1.1:35283420-35283439 None:intergenic 25.0%
! AAACAGTCTATTTAAAGAGT+TGG + chr1.1:35283255-35283274 None:intergenic 25.0%
! AATGATAATAAATCCGTACA+GGG + chr1.1:35283152-35283171 None:intergenic 25.0%
! ACTAACAGAAAACATATTCA+TGG - chr1.1:35284596-35284615 MS.gene073655:CDS 25.0%
! ATAGTAATTGTGAATGAAAG+TGG + chr1.1:35285051-35285070 None:intergenic 25.0%
! ATGTTAATGTTACTGTCATT+AGG - chr1.1:35285374-35285393 MS.gene073655:intron 25.0%
! CAATCCAAATTTATACTCAT+TGG - chr1.1:35283488-35283507 MS.gene073655:intron 25.0%
! CTCTTTAAATAGACTGTTTA+AGG - chr1.1:35283256-35283275 MS.gene073655:CDS 25.0%
! TAATGATAATAAATCCGTAC+AGG + chr1.1:35283153-35283172 None:intergenic 25.0%
! TATTAACAAGAGAGTCATTT+GGG + chr1.1:35284558-35284577 None:intergenic 25.0%
! TATTACAGAAAAAGTAGTAC+AGG + chr1.1:35284457-35284476 None:intergenic 25.0%
! TGCAAAATGTTTGGTATATA+TGG - chr1.1:35283336-35283355 MS.gene073655:CDS 25.0%
! TGTTAATGTTACTGTCATTA+GGG - chr1.1:35285375-35285394 MS.gene073655:intron 25.0%
! TTACTAGACTTTATTCTTTC+TGG - chr1.1:35282799-35282818 MS.gene073655:intron 25.0%
! TTGAAGATCAAAATAACTAG+CGG - chr1.1:35284688-35284707 MS.gene073655:intron 25.0%
!! CAAAATTTGAGATGAACTAA+GGG + chr1.1:35284083-35284102 None:intergenic 25.0%
!! TTTGATTGATTGTAGTTTGT+TGG + chr1.1:35285214-35285233 None:intergenic 25.0%
!!! CTTTTAGTTTTCCAATACAA+AGG - chr1.1:35283697-35283716 MS.gene073655:intron 25.0%
!!! GGGTTAGTTTATACTTTATA+GGG + chr1.1:35282727-35282746 None:intergenic 25.0%
!!! GTTTGTTTTTAGTGTCAAAA+TGG + chr1.1:35283127-35283146 None:intergenic 25.0%
!!! TGGGTTAGTTTATACTTTAT+AGG + chr1.1:35282728-35282747 None:intergenic 25.0%
AAAAAGAGAACCAACTCAAA+TGG - chr1.1:35283907-35283926 MS.gene073655:CDS 30.0%
AAACAACACTAATAAGTGGA+CGG + chr1.1:35285567-35285586 None:intergenic 30.0%
AAACTAAAAGATCTCCACAT+CGG + chr1.1:35283687-35283706 None:intergenic 30.0%
AACGCAATAAAATAGAGCTT+AGG + chr1.1:35285342-35285361 None:intergenic 30.0%
AAGCATGATCAAAACAGTAT+TGG + chr1.1:35283311-35283330 None:intergenic 30.0%
ACACAAACAACACTAATAAG+TGG + chr1.1:35285571-35285590 None:intergenic 30.0%
ACATGAATGAGTTATTGCAA+GGG - chr1.1:35284860-35284879 MS.gene073655:intron 30.0%
ACGCAATAAAATAGAGCTTA+GGG + chr1.1:35285341-35285360 None:intergenic 30.0%
AGCATGATCAAAACAGTATT+GGG + chr1.1:35283310-35283329 None:intergenic 30.0%
ATATCCCTTAAACTTCCAAA+TGG - chr1.1:35283583-35283602 MS.gene073655:intron 30.0%
ATTAACAAGAGAGTCATTTG+GGG + chr1.1:35284557-35284576 None:intergenic 30.0%
CGTAACAAATACTTGTTCAA+CGG - chr1.1:35285438-35285457 MS.gene073655:intron 30.0%
CTATTAACAAGAGAGTCATT+TGG + chr1.1:35284559-35284578 None:intergenic 30.0%
GATAATTTGACAGTGAAACT+AGG + chr1.1:35284395-35284414 None:intergenic 30.0%
GTGTAATATTTCCACATATC+TGG - chr1.1:35283390-35283409 MS.gene073655:intron 30.0%
TAAAAACAAACAACCCTGTA+CGG - chr1.1:35283136-35283155 MS.gene073655:CDS 30.0%
TACATGAATGAGTTATTGCA+AGG - chr1.1:35284859-35284878 MS.gene073655:intron 30.0%
TATCCCTTAAACTTCCAAAT+GGG - chr1.1:35283584-35283603 MS.gene073655:intron 30.0%
TATTCTTTCGAAAACCAACT+AGG + chr1.1:35284841-35284860 None:intergenic 30.0%
TCAATACATTCAGTTCCTAT+AGG + chr1.1:35284520-35284539 None:intergenic 30.0%
TGTTGAAGGTGATAATAGAT+TGG - chr1.1:35284424-35284443 MS.gene073655:CDS 30.0%
TTATCACCTTCAACATGATA+TGG + chr1.1:35284419-35284438 None:intergenic 30.0%
TTCTATTGGACTTAAGAATG+TGG - chr1.1:35283019-35283038 MS.gene073655:intron 30.0%
TTTGGAAGTTTAAGGGATAT+TGG + chr1.1:35283583-35283602 None:intergenic 30.0%
! AACTCTTTTCAGCATTTGAA+AGG + chr1.1:35284262-35284281 None:intergenic 30.0%
! CCAAAATTTGAGATGAACTA+AGG + chr1.1:35284084-35284103 None:intergenic 30.0%
! CCTTAGTTCATCTCAAATTT+TGG - chr1.1:35284081-35284100 MS.gene073655:intron 30.0%
! CGTTGAACAAGTATTTGTTA+CGG + chr1.1:35285440-35285459 None:intergenic 30.0%
! TAAGCTCTATTTTATTGCGT+TGG - chr1.1:35285341-35285360 MS.gene073655:intron 30.0%
! TAGTTTTCCAATACAAAGGA+GGG - chr1.1:35283701-35283720 MS.gene073655:intron 30.0%
!! TTAGTTTTCCAATACAAAGG+AGG - chr1.1:35283700-35283719 MS.gene073655:intron 30.0%
!! TTTGTATTTTCAGTGTCACT+AGG + chr1.1:35283874-35283893 None:intergenic 30.0%
!!! GAGTTTTTAAAGTTTTGCAG+AGG - chr1.1:35284277-35284296 MS.gene073655:CDS 30.0%
AACAACACTAATAAGTGGAC+GGG + chr1.1:35285566-35285585 None:intergenic 35.0%
AATTTGACCCTCCTTTGTAT+TGG + chr1.1:35283711-35283730 None:intergenic 35.0%
ACAAATACTTGTTCAACGGT+CGG - chr1.1:35285442-35285461 MS.gene073655:intron 35.0%
ATTCATGCACGAAATATGCA+AGG + chr1.1:35284773-35284792 None:intergenic 35.0%
CAAATCAGTTTCACATGGTT+TGG - chr1.1:35285494-35285513 MS.gene073655:intron 35.0%
CGCAATAAAATAGAGCTTAG+GGG + chr1.1:35285340-35285359 None:intergenic 35.0%
GCAATAAAATAGAGCTTAGG+GGG + chr1.1:35285339-35285358 None:intergenic 35.0%
GCATGATCAAAACAGTATTG+GGG + chr1.1:35283309-35283328 None:intergenic 35.0%
GCTTTCTGTTGCAAAATGTT+TGG - chr1.1:35283327-35283346 MS.gene073655:CDS 35.0%
GTCAGCATGCAAAATGAATT+GGG - chr1.1:35283606-35283625 MS.gene073655:intron 35.0%
TACTATTATCCCAACCACAA+AGG - chr1.1:35285065-35285084 MS.gene073655:intron 35.0%
TGACCCATTTGGAAGTTTAA+GGG + chr1.1:35283590-35283609 None:intergenic 35.0%
TGAGACAAATCAGTTTCACA+TGG - chr1.1:35285489-35285508 MS.gene073655:intron 35.0%
TTATCGCCATATCATGTTGA+AGG - chr1.1:35284410-35284429 MS.gene073655:CDS 35.0%
TTCGAAAACCAACTAGGTAT+CGG + chr1.1:35284835-35284854 None:intergenic 35.0%
TTCTGTCAAAATGGAATGTG+CGG - chr1.1:35285532-35285551 MS.gene073655:CDS 35.0%
! AAGGAACATGAGTTGAAAGT+TGG - chr1.1:35284991-35285010 MS.gene073655:intron 35.0%
! AAGGCAACAATTAGAAGTGT+TGG - chr1.1:35284883-35284902 MS.gene073655:intron 35.0%
! AGAGGCTTTCATTTTCCTAT+AGG - chr1.1:35284502-35284521 MS.gene073655:CDS 35.0%
! AGTATTTGTTACGGTTACGT+CGG + chr1.1:35285431-35285450 None:intergenic 35.0%
! ATGGTATTTGGCTTCAGAAT+TGG - chr1.1:35283641-35283660 MS.gene073655:intron 35.0%
! CAAGAGCAGTTTTCTAATGA+GGG - chr1.1:35284948-35284967 MS.gene073655:intron 35.0%
! CATGATCAAAACAGTATTGG+GGG + chr1.1:35283308-35283327 None:intergenic 35.0%
! TAAAGTTTTGCAGAGGCTAA+TGG - chr1.1:35284284-35284303 MS.gene073655:CDS 35.0%
!! AACAATTAGAAGTGTTGGTG+AGG - chr1.1:35284888-35284907 MS.gene073655:intron 35.0%
!! AGGTTGGAAGTCATTTTCAA+AGG - chr1.1:35284972-35284991 MS.gene073655:intron 35.0%
!! AGTTGGTTCTCTTTTTCTTG+AGG + chr1.1:35283903-35283922 None:intergenic 35.0%
!! GTTGGTTCTCTTTTTCTTGA+GGG + chr1.1:35283902-35283921 None:intergenic 35.0%
!! TTGGTTCTCTTTTTCTTGAG+GGG + chr1.1:35283901-35283920 None:intergenic 35.0%
AAAATGAATTGGGTGCAACG+CGG - chr1.1:35283616-35283635 MS.gene073655:intron 40.0%
AACTAGCGGAAGAGACATTT+AGG - chr1.1:35284702-35284721 MS.gene073655:intron 40.0%
AGAATTGGAAGAGGTTTGCA+TGG - chr1.1:35283656-35283675 MS.gene073655:intron 40.0%
AGTGAAACTAGGACTCTCAT+TGG + chr1.1:35284384-35284403 None:intergenic 40.0%
CAATACCTTGAAACTTCTCC+GGG + chr1.1:35285098-35285117 None:intergenic 40.0%
CTGACCCATTTGGAAGTTTA+AGG + chr1.1:35283591-35283610 None:intergenic 40.0%
GAATGAGTTATTGCAAGGGA+AGG - chr1.1:35284864-35284883 MS.gene073655:intron 40.0%
GCAATACCTTGAAACTTCTC+CGG + chr1.1:35285099-35285118 None:intergenic 40.0%
GGTCAGCATGCAAAATGAAT+TGG - chr1.1:35283605-35283624 MS.gene073655:intron 40.0%
GTATACTTGCTTCACTTTCG+TGG - chr1.1:35283047-35283066 MS.gene073655:intron 40.0%
GTGAAACTAGGACTCTCATT+GGG + chr1.1:35284383-35284402 None:intergenic 40.0%
TACCTCTCTACGAAATTCCT+TGG + chr1.1:35283541-35283560 None:intergenic 40.0%
TGCAACCCAGCAAAAAGTTT+CGG - chr1.1:35283993-35284012 MS.gene073655:intron 40.0%
TTACACATAGAGAGAACCGA+AGG + chr1.1:35283376-35283395 None:intergenic 40.0%
TTCCAAGGAATTTCGTAGAG+AGG - chr1.1:35283536-35283555 MS.gene073655:intron 40.0%
TTGTGAATGTTAGTCCCTTG+AGG + chr1.1:35283955-35283974 None:intergenic 40.0%
! ACTTACCCGAAACTTTTTGC+TGG + chr1.1:35284002-35284021 None:intergenic 40.0%
! AGTAGCAATGCCATTTGAGT+TGG + chr1.1:35283920-35283939 None:intergenic 40.0%
! ATTTTGCATGCTGACCCATT+TGG + chr1.1:35283601-35283620 None:intergenic 40.0%
! CAGTTTCACATGGTTTGGAA+CGG - chr1.1:35285499-35285518 MS.gene073655:intron 40.0%
! CTTACCCGAAACTTTTTGCT+GGG + chr1.1:35284001-35284020 None:intergenic 40.0%
! GCAAGAGCAGTTTTCTAATG+AGG - chr1.1:35284947-35284966 MS.gene073655:intron 40.0%
! GGAATTTCGTAGAGAGGTAT+TGG - chr1.1:35283542-35283561 MS.gene073655:intron 40.0%
! TTTGGCTTCAGAATTGGAAG+AGG - chr1.1:35283647-35283666 MS.gene073655:intron 40.0%
!! GGCAATACCATTTTTGCCTT+CGG - chr1.1:35283357-35283376 MS.gene073655:CDS 40.0%
ACCAAGTGATTGAGCACAAG+TGG + chr1.1:35283228-35283247 None:intergenic 45.0%
ACCACTTGTGCTCAATCACT+TGG - chr1.1:35283224-35283243 MS.gene073655:CDS 45.0%
ACCTAGGCAAACCAGATATG+TGG + chr1.1:35283404-35283423 None:intergenic 45.0%
CCACCAAATGATGAATCGCT+CGG + chr1.1:35283195-35283214 None:intergenic 45.0%
CGAAAGCGGTTCTGTCAAAA+TGG - chr1.1:35285523-35285542 MS.gene073655:CDS 45.0%
GAGAGAACCGAAGGCAAAAA+TGG + chr1.1:35283367-35283386 None:intergenic 45.0%
GCAACCCAGCAAAAAGTTTC+GGG - chr1.1:35283994-35284013 MS.gene073655:intron 45.0%
GTTACGGTTACGTCGGATTT+CGG + chr1.1:35285424-35285443 None:intergenic 45.0%
TAATGGAAACACAGGAGGCA+TGG - chr1.1:35284301-35284320 MS.gene073655:CDS 45.0%
TGAAACAGCCGATACCTAGT+TGG - chr1.1:35284824-35284843 MS.gene073655:intron 45.0%
TGAAAGCCTCTCACACAGTT+AGG + chr1.1:35284493-35284512 None:intergenic 45.0%
TGTGCTTGCAGATGATTCCA+AGG - chr1.1:35283521-35283540 MS.gene073655:intron 45.0%
TTCGTACCTAACTGTGTGAG+AGG - chr1.1:35284484-35284503 MS.gene073655:CDS 45.0%
TTGAGCACAAGTGGTTAACG+AGG + chr1.1:35283219-35283238 None:intergenic 45.0%
! AATGGAAACACAGGAGGCAT+GGG - chr1.1:35284302-35284321 MS.gene073655:CDS 45.0%
! AGCAGTTTTCTAATGAGGGC+AGG - chr1.1:35284952-35284971 MS.gene073655:intron 45.0%
! CACTAATAAGTGGACGGGTT+CGG + chr1.1:35285561-35285580 None:intergenic 45.0%
! GTTTTCTAATGAGGGCAGGT+TGG - chr1.1:35284956-35284975 MS.gene073655:intron 45.0%
! TCCACATATCTGGTTTGCCT+AGG - chr1.1:35283400-35283419 MS.gene073655:intron 45.0%
!! AACTAGGTATCGGCTGTTTC+AGG + chr1.1:35284825-35284844 None:intergenic 45.0%
!! TAGAAGTGTTGGTGAGGACA+AGG - chr1.1:35284894-35284913 MS.gene073655:intron 45.0%
ACTACTGCTGCTACACCTCA+AGG - chr1.1:35283937-35283956 MS.gene073655:intron 50.0%
ATCCCAACCACAAAGGAACC+AGG - chr1.1:35285072-35285091 MS.gene073655:intron 50.0%
CCGAGCGATTCATCATTTGG+TGG - chr1.1:35283192-35283211 MS.gene073655:CDS 50.0%
CTACTGCTGCTACACCTCAA+GGG - chr1.1:35283938-35283957 MS.gene073655:intron 50.0%
GAGGCTAATGGAAACACAGG+AGG - chr1.1:35284296-35284315 MS.gene073655:CDS 50.0%
GCAGAGGCTAATGGAAACAC+AGG - chr1.1:35284293-35284312 MS.gene073655:CDS 50.0%
GCTCCGAGCGATTCATCATT+TGG - chr1.1:35283189-35283208 MS.gene073655:CDS 50.0%
GTTCAACGGTCGGATGTGTA+CGG - chr1.1:35285452-35285471 MS.gene073655:intron 50.0%
TTCAACGGTCGGATGTGTAC+GGG - chr1.1:35285453-35285472 MS.gene073655:intron 50.0%
! GAGCGTGGTAGTGAAGCTAA+AGG - chr1.1:35282633-35282652 MS.gene073655:intron 50.0%
! TGCAACGCGGTGATGGTATT+TGG - chr1.1:35283629-35283648 MS.gene073655:intron 50.0%
! TGGTTTGGAACGGACGAAAG+CGG - chr1.1:35285509-35285528 MS.gene073655:intron 50.0%
!! GTATCGGCTGTTTCAGGTCA+TGG + chr1.1:35284819-35284838 None:intergenic 50.0%
AACCACAAAGGAACCAGGCC+CGG - chr1.1:35285077-35285096 MS.gene073655:intron 55.0%
AATTGGGTGCAACGCGGTGA+TGG - chr1.1:35283622-35283641 MS.gene073655:intron 55.0%
CGGTTACGTCGGATTTCGGT+CGG + chr1.1:35285420-35285439 None:intergenic 55.0%
GAACAACACGGCAATGAGCG+TGG - chr1.1:35282618-35282637 MS.gene073655:intron 55.0%
GGCCTGGTTCCTTTGTGGTT+GGG + chr1.1:35285077-35285096 None:intergenic 55.0%
TTTGCATGGTCGCTCCGATG+TGG - chr1.1:35283670-35283689 MS.gene073655:intron 55.0%
! GTGTTGGTGAGGACAAGGCA+TGG - chr1.1:35284899-35284918 MS.gene073655:intron 55.0%
CCAGGCCCGGAGAAGTTTCA+AGG - chr1.1:35285090-35285109 MS.gene073655:intron 60.0%
CCTTGAAACTTCTCCGGGCC+TGG + chr1.1:35285093-35285112 None:intergenic 60.0%
GGGCCTGGTTCCTTTGTGGT+TGG + chr1.1:35285078-35285097 None:intergenic 60.0%
CTCCGGGCCTGGTTCCTTTG+TGG + chr1.1:35285082-35285101 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 35282609 35285615 35282609 ID=MS.gene073655
chr1.1 mRNA 35282609 35285615 35282609 ID=MS.gene073655.t1;Parent=MS.gene073655
chr1.1 exon 35285517 35285615 35285517 ID=MS.gene073655.t1.exon1;Parent=MS.gene073655.t1
chr1.1 CDS 35285517 35285615 35285517 ID=cds.MS.gene073655.t1;Parent=MS.gene073655.t1
chr1.1 exon 35284209 35284692 35284209 ID=MS.gene073655.t1.exon2;Parent=MS.gene073655.t1
chr1.1 CDS 35284209 35284692 35284209 ID=cds.MS.gene073655.t1;Parent=MS.gene073655.t1
chr1.1 exon 35283779 35283927 35283779 ID=MS.gene073655.t1.exon3;Parent=MS.gene073655.t1
chr1.1 CDS 35283779 35283927 35283779 ID=cds.MS.gene073655.t1;Parent=MS.gene073655.t1
chr1.1 exon 35283113 35283392 35283113 ID=MS.gene073655.t1.exon4;Parent=MS.gene073655.t1
chr1.1 CDS 35283113 35283392 35283113 ID=cds.MS.gene073655.t1;Parent=MS.gene073655.t1
chr1.1 exon 35282609 35282625 35282609 ID=MS.gene073655.t1.exon5;Parent=MS.gene073655.t1
chr1.1 CDS 35282609 35282625 35282609 ID=cds.MS.gene073655.t1;Parent=MS.gene073655.t1
Gene Sequence

>MS.gene073655

ATGTGGTTTGAACAACACGGCAATGAGCGTGGTAGTGAAGCTAAAGGAATGCATTTCTATTTACATGTTCAACAATGCGAGCTTCAACACAAAGAACTCGTAAGCATTTTTCAAACCCTATAAAGTATAAACTAACCCATTTATGTATTACTATCTGTAATTATTATTAATTAAGTAAGTGATTAGCGTTTTACTAGACTTTATTCTTTCTGGACTACATTAATATGATTCTTCATTCAATCTACATTAATATTTTGGGTTCAGTTGAAAACACAGTGACCCATTTTTATTATTCAATAAACTTTGCTTCTTCTCAATACATATACATTGCTTGAAAGTTGTTAAATTCATACGTTGCTTGTTATTCACAAATGAAGAATCAAATGCTATATTTCTTATAATTTCTTTGATTCTATTGGACTTAAGAATGTGGATCTTGTATACTTGCTTCACTTTCGTGGCGTATTGAACTTGATTTTCATCACTGAATGAAGTTTGCTTCGTATTAAAAATACCCATTTTGACACTAAAAACAAACAACCCTGTACGGATTTATTATCATTAATGGAATTGGTTTTTCGCTCCGAGCGATTCATCATTTGGTGGACCTCGTTAACCACTTGTGCTCAATCACTTGGTCATACCAACTCTTTAAATAGACTGTTTAAGGTTTGTAGTCAATGTGTTTGATGAAAACCCCCAATACTGTTTTGATCATGCTTTCTGTTGCAAAATGTTTGGTATATATGGCAATACCATTTTTGCCTTCGGTTCTCTCTATGTGTAATATTTCCACATATCTGGTTTGCCTAGGTATTTGAACTTAGTTTTCATTATTCAATCAAGTATGCTTTGCTGCATTAATATTCAGTACTAGTTCAATCCAAATTTATACTCATTGGTTTTTGAAAATGTGCTTGCAGATGATTCCAAGGAATTTCGTAGAGAGGTATTGGAAAGATGTATCAAATCCAATATCCCTTAAACTTCCAAATGGGTCAGCATGCAAAATGAATTGGGTGCAACGCGGTGATGGTATTTGGCTTCAGAATTGGAAGAGGTTTGCATGGTCGCTCCGATGTGGAGATCTTTTAGTTTTCCAATACAAAGGAGGGTCAAATTTTCAAGTCATTATATTAGATGATAGTAAATTAGAAATCAACTATTCAAGTATGAGATGCAACAACGATCAAGAAAATACTAAAGAGAGTGATGATGATGATGATGACGACGACGACGATGAATATGAGTGTGTTGAGATTCCTAGTGACACTGAAAATACAAAAATTCCCCTCAAGAAAAAGAGAACCAACTCAAATGGCATTGCTACTACTGCTGCTACACCTCAAGGGACTAACATTCACAAGAGAAAAACTAATATCAATGCAACCCAGCAAAAAGTTTCGGGTAAGTTATTCTACTTCCTTTTATTTATTCATCTGTTTATGGGCAAAATATGTTTTTAATTAGTCCCTTAGTTCATCTCAAATTTTGGTTTTAGTCTTTCTTTCCACTTTTTAATCCATACAAATTACATAAGTACATGTTTTTAGTTCTGCACCCACTTTATTTACGTATATTCTTTTAAGATTAAATTAATTTTCAAGACTGTCATACAAAAAAAATCAAGACGCAAACTTTTATTTTGTACCTTTCAAATGCTGAAAAGAGTTTTTAAAGTTTTGCAGAGGCTAATGGAAACACAGGAGGCATGGGTAAGAATGCTAAAAATGCACAAAGACTAAACGAGAGAAGTTGCACAAATTCTCATCCCAATGAGAGTCCTAGTTTCACTGTCAAATTATCGCCATATCATGTTGAAGGTGATAATAGATTGGTATGTTTCCTGTACTACTTTTTCTGTAATAGTGACATTTCGTACCTAACTGTGTGAGAGGCTTTCATTTTCCTATAGGAACTGAATGTATTGAAATTACAAACAAATCCCCAAATGACTCTCTTGTTAATAGTTTTATTGAATAAACTTACTAACAGAAAACATATTCATGGTGTAATGTAAATTTATTCATTAAATTATTAACAAAAGAAAAAAGTATAGCAAACATACTAAAGACAGATTTGAAGATCAAAATAACTAGCGGAAGAGACATTTAGGCATATTTTTATAATTTTTGATACATTTAAGTACTGTTTGAATGAGCCTTGCATATTTCGTGCATGAATATATTTTAATCAATCTGTTTAAACCATGACCTGAAACAGCCGATACCTAGTTGGTTTTCGAAAGAATACATGAATGAGTTATTGCAAGGGAAGGCAACAATTAGAAGTGTTGGTGAGGACAAGGCATGGCACGTGACAATAAACTTTCAGAAAAGCAAGAGCAGTTTTCTAATGAGGGCAGGTTGGAAGTCATTTTCAAAGGAACATGAGTTGAAAGTTGGTGATGTATGTAAATTTGAGATGACTCAACGCGAACCACTTTCATTCACAATTACTATTATCCCAACCACAAAGGAACCAGGCCCGGAGAAGTTTCAAGGTATTGCTTTTATTATTGTTGTTTTTGAAATGATACATATTTTATTATCTTCTGATTTTGATTTTGATACATTTGATCAATGTTAAAAGTTTTAATTTGCCAACAAACTACAATCAATCAAATGTGTAAAATATTTTAAGGTTTAAATCTTGGAACGAATATTTCACTTTGTTTTAAGATTACTAGATCAAAAAGGAGAACTTTTCTGATGAACTTCAGCTAGTCCCCCTAAGCTCTATTTTATTGCGTTGGTTAAATACACATGTTAATGTTACTGTCATTAGGGCTAAGCAAGAATTTGTCATCCGACCGAAATCCGACGTAACCGTAACAAATACTTGTTCAACGGTCGGATGTGTACGGGCTTCAGAAAGAAGTGAGACAAATCAGTTTCACATGGTTTGGAACGGACGAAAGCGGTTCTGTCAAAATGGAATGTGCGGTGTCCGAACCCGTCCACTTATTAGTGTTGTTTGTGTCTCTGTAGAAGCCACGCGCGCGTGA
Protein sequence

>MS.gene073655.t1

MWFEQHGNERGSEAKGMHFYLHVQQCELQHKELMIPRNFVERYWKDVSNPISLKLPNGSACKMNWVQRGDGIWLQNWKRFAWSLRCGDLLVFQYKGGSNFQVIILDDSKLEINYSSMRCNNDQENTKESDDDDDDDDDDEYECVEIPSDTENTKIPLKKKRTNSNGIATTAATPQGTNIHKRKTNINATQQKVSEANGNTGGMGKNAKNAQRLNERSCTNSHPNESPSFTVKLSPYHVEGDNRLPIPSWFSKEYMNELLQGKATIRSVGEDKAWHVTINFQKSKSSFLMRAGWKSFSKEHELKVGDVCKFEMTQREPLSFTITIIPTTKEPGPEKFQEATRA