Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89376.t1 | XP_024630382.1 | 60.3 | 433 | 133 | 7 | 52 | 464 | 3 | 416 | 2.40E-109 | 406 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89376.t1 | Q2QMT6 | 20.4 | 470 | 307 | 15 | 38 | 465 | 41 | 485 | 1.0e-07 | 59.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89376.t1 | A0A072VFJ7 | 53.8 | 442 | 133 | 7 | 31 | 463 | 14 | 393 | 6.8e-98 | 367.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89376.t1 | MTR_1g035570 | 51.467 | 443 | 144 | 7 | 31 | 464 | 14 | 394 | 2.91e-134 | 393 |
| MS.gene89376.t1 | MTR_1g035490 | 59.878 | 329 | 96 | 6 | 163 | 464 | 9 | 328 | 6.49e-108 | 323 |
| MS.gene89376.t1 | MTR_6g061070 | 40.121 | 496 | 231 | 15 | 7 | 464 | 3 | 470 | 1.81e-101 | 311 |
| MS.gene89376.t1 | MTR_1g035620 | 38.877 | 463 | 203 | 10 | 22 | 465 | 9 | 410 | 7.03e-85 | 267 |
| MS.gene89376.t1 | MTR_1g035500 | 71.978 | 182 | 38 | 4 | 1 | 171 | 1 | 180 | 1.21e-83 | 256 |
| MS.gene89376.t1 | MTR_1g035480 | 71.176 | 170 | 42 | 3 | 7 | 171 | 2 | 169 | 1.10e-78 | 243 |
| MS.gene89376.t1 | MTR_1g033740 | 65.363 | 179 | 51 | 3 | 1 | 171 | 1 | 176 | 1.85e-76 | 238 |
| MS.gene89376.t1 | MTR_1g035640 | 34.423 | 520 | 186 | 17 | 31 | 464 | 14 | 464 | 7.94e-65 | 216 |
| MS.gene89376.t1 | MTR_1g035510 | 62.252 | 151 | 45 | 3 | 37 | 179 | 1 | 147 | 2.51e-55 | 184 |
| MS.gene89376.t1 | MTR_1g035510 | 50.000 | 64 | 30 | 1 | 356 | 417 | 159 | 222 | 1.30e-11 | 64.7 |
| MS.gene89376.t1 | MTR_1g035470 | 66.423 | 137 | 38 | 4 | 37 | 169 | 1 | 133 | 3.81e-53 | 175 |
| MS.gene89376.t1 | MTR_1g035520 | 37.059 | 340 | 136 | 12 | 37 | 342 | 87 | 382 | 1.31e-50 | 176 |
| MS.gene89376.t1 | MTR_1g035520 | 41.111 | 90 | 49 | 2 | 379 | 464 | 294 | 383 | 6.46e-12 | 67.4 |
| MS.gene89376.t1 | MTR_1g050845 | 42.510 | 247 | 118 | 9 | 208 | 431 | 119 | 364 | 4.34e-37 | 145 |
| MS.gene89376.t1 | MTR_1g050845 | 45.378 | 119 | 57 | 2 | 8 | 125 | 2 | 113 | 1.09e-23 | 105 |
| MS.gene89376.t1 | MTR_8g103940 | 26.411 | 496 | 278 | 15 | 20 | 465 | 37 | 495 | 2.31e-35 | 137 |
| MS.gene89376.t1 | MTR_1g108780 | 24.845 | 483 | 271 | 14 | 38 | 465 | 13 | 458 | 1.38e-31 | 126 |
| MS.gene89376.t1 | MTR_3g098790 | 29.859 | 355 | 189 | 13 | 17 | 359 | 8 | 314 | 8.53e-29 | 116 |
| MS.gene89376.t1 | MTR_5g044670 | 27.586 | 348 | 199 | 11 | 7 | 347 | 5 | 306 | 1.88e-28 | 115 |
| MS.gene89376.t1 | MTR_1g035650 | 32.787 | 244 | 114 | 7 | 22 | 264 | 9 | 203 | 4.69e-24 | 99.8 |
| MS.gene89376.t1 | MTR_7g050560 | 28.655 | 342 | 173 | 10 | 16 | 344 | 7 | 290 | 4.84e-23 | 99.8 |
| MS.gene89376.t1 | MTR_4g119990 | 25.401 | 374 | 219 | 12 | 17 | 370 | 10 | 343 | 5.02e-23 | 100 |
| MS.gene89376.t1 | MTR_7g050580 | 27.300 | 337 | 184 | 9 | 16 | 344 | 7 | 290 | 1.70e-21 | 95.1 |
| MS.gene89376.t1 | MTR_1g035460 | 26.239 | 343 | 214 | 10 | 37 | 373 | 1 | 310 | 2.39e-21 | 95.9 |
| MS.gene89376.t1 | MTR_7g050710 | 27.168 | 346 | 192 | 13 | 15 | 344 | 6 | 307 | 7.83e-21 | 93.6 |
| MS.gene89376.t1 | MTR_7g050720 | 27.907 | 344 | 205 | 12 | 14 | 344 | 2 | 315 | 4.60e-20 | 91.3 |
| MS.gene89376.t1 | MTR_6g043890 | 25.312 | 320 | 187 | 10 | 19 | 328 | 12 | 289 | 5.26e-16 | 79.3 |
| MS.gene89376.t1 | MTR_3g061310 | 23.939 | 330 | 189 | 9 | 20 | 342 | 10 | 284 | 2.64e-15 | 76.6 |
| MS.gene89376.t1 | MTR_1g021400 | 23.476 | 328 | 229 | 10 | 20 | 336 | 28 | 344 | 5.00e-14 | 73.9 |
| MS.gene89376.t1 | MTR_4g068320 | 21.762 | 386 | 234 | 10 | 26 | 347 | 10 | 391 | 5.99e-14 | 73.9 |
| MS.gene89376.t1 | MTR_3g061350 | 23.780 | 328 | 191 | 8 | 20 | 342 | 10 | 283 | 3.32e-13 | 70.5 |
| MS.gene89376.t1 | MTR_1g035440 | 39.806 | 103 | 58 | 2 | 19 | 117 | 12 | 114 | 6.20e-13 | 68.9 |
| MS.gene89376.t1 | MTR_3g005460 | 30.216 | 139 | 93 | 2 | 5 | 139 | 245 | 383 | 4.37e-12 | 68.6 |
| MS.gene89376.t1 | MTR_3g061290 | 35.821 | 134 | 73 | 5 | 20 | 150 | 10 | 133 | 4.98e-12 | 65.5 |
| MS.gene89376.t1 | MTR_3g005495 | 27.848 | 158 | 101 | 3 | 21 | 165 | 242 | 399 | 1.14e-11 | 67.0 |
| MS.gene89376.t1 | MTR_3g005480 | 32.075 | 106 | 69 | 2 | 15 | 117 | 14 | 119 | 2.60e-11 | 64.3 |
| MS.gene89376.t1 | MTR_3g061370 | 23.582 | 335 | 193 | 10 | 15 | 342 | 2 | 280 | 3.87e-11 | 63.9 |
| MS.gene89376.t1 | MTR_3g005420 | 32.787 | 122 | 79 | 2 | 21 | 139 | 288 | 409 | 6.22e-11 | 65.1 |
| MS.gene89376.t1 | MTR_7g050640 | 36.449 | 107 | 63 | 3 | 18 | 119 | 9 | 115 | 7.09e-11 | 59.7 |
| MS.gene89376.t1 | MTR_3g005490 | 31.000 | 100 | 66 | 2 | 21 | 117 | 20 | 119 | 9.77e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89376.t1 | AT3G18990 | 23.118 | 372 | 244 | 11 | 31 | 378 | 15 | 368 | 3.15e-18 | 86.7 |
| MS.gene89376.t1 | AT3G18990 | 22.741 | 343 | 225 | 10 | 31 | 349 | 15 | 341 | 2.76e-17 | 83.2 |
Find 75 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATTGGAGGAACGCCTTC+TGG | 0.220827 | 7.1:-87846988 | MS.gene89376:CDS |
| GAAACTTTGTCGAAAAGTTT+TGG | 0.241472 | 7.1:-87848947 | MS.gene89376:CDS |
| TTTGGCAATTTCAGAGATAT+TGG | 0.252576 | 7.1:+87848909 | None:intergenic |
| TAATTAATCCTACCGGGTAT+AGG | 0.309193 | 7.1:+87846284 | None:intergenic |
| TTAATGGGACTGCAACAATA+AGG | 0.310663 | 7.1:-87847320 | MS.gene89376:CDS |
| TTACGCCAACGGCTATTTCT+TGG | 0.315283 | 7.1:-87847456 | MS.gene89376:intron |
| CATGGCCGTGGAAGTGCGTT+TGG | 0.320925 | 7.1:-87847286 | MS.gene89376:CDS |
| TGTTCTCTTGAAAAGTCTTT+TGG | 0.325904 | 7.1:+87847354 | None:intergenic |
| ATGATATCTGGCTTCTGAAT+TGG | 0.326248 | 7.1:-87848848 | MS.gene89376:CDS |
| AATTTCAGAGATATTGGATT+AGG | 0.352230 | 7.1:+87848915 | None:intergenic |
| ATGGCCGTGGAAGTGCGTTT+GGG | 0.354332 | 7.1:-87847285 | MS.gene89376:CDS |
| AATTAATCCTACCGGGTATA+GGG | 0.371270 | 7.1:+87846285 | None:intergenic |
| TGTCCTTATCAATCAGTTCC+AGG | 0.380291 | 7.1:+87846014 | None:intergenic |
| TACAACGTCATAATGATATC+TGG | 0.383114 | 7.1:-87848860 | MS.gene89376:CDS |
| TCATTAACAGTTTCAGATGT+TGG | 0.387362 | 7.1:+87847512 | None:intergenic |
| CATTAACAGTTTCAGATGTT+GGG | 0.399071 | 7.1:+87847513 | None:intergenic |
| TAATGGGACTGCAACAATAA+GGG | 0.405502 | 7.1:-87847319 | MS.gene89376:CDS |
| GTCCAAAAGAAAATTGTCTT+GGG | 0.409971 | 7.1:-87846960 | MS.gene89376:CDS |
| AATGGTGCTTTGTTGTTGAT+AGG | 0.410643 | 7.1:+87849410 | None:intergenic |
| GCTTTGAGTGTAAAATGAAA+TGG | 0.416297 | 7.1:-87848884 | MS.gene89376:CDS |
| ACTCGTGTCAAGGAATTACT+AGG | 0.429908 | 7.1:-87847126 | MS.gene89376:intron |
| GAAATATTCAAAGTGAAGAT+TGG | 0.436248 | 7.1:-87846049 | MS.gene89376:CDS |
| CCAAATGAATTTATGAAAAG+AGG | 0.445326 | 7.1:-87846187 | MS.gene89376:CDS |
| AATCTACAGCGACTGATACT+AGG | 0.452177 | 7.1:+87846097 | None:intergenic |
| ACATTGGAGGAACGCCTTCT+GGG | 0.452594 | 7.1:-87846987 | MS.gene89376:CDS |
| CAAAGTAGCCATGGTGAAGA+AGG | 0.465707 | 7.1:-87847546 | MS.gene89376:CDS |
| TTGCAAATCACGAGGTTGAA+TGG | 0.469827 | 7.1:+87849341 | None:intergenic |
| CGTCCAAAAGAAAATTGTCT+TGG | 0.475206 | 7.1:-87846961 | MS.gene89376:CDS |
| AAGTTCATATGAGGATGAAA+TGG | 0.483669 | 7.1:-87848011 | MS.gene89376:CDS |
| GAAAGCTCGAAGGACAAGAA+AGG | 0.486379 | 7.1:-87847984 | MS.gene89376:CDS |
| AATCAGACCCACATTTGTAC+TGG | 0.492113 | 7.1:+87848781 | None:intergenic |
| TCTCCTGGAACTGATTGATA+AGG | 0.492690 | 7.1:-87846017 | MS.gene89376:CDS |
| GATTGGAGATACTTGTCTCC+TGG | 0.500089 | 7.1:-87846032 | MS.gene89376:CDS |
| AAAGCTCGAAGGACAAGAAA+GGG | 0.502274 | 7.1:-87847983 | MS.gene89376:CDS |
| TGGCCGTGGAAGTGCGTTTG+GGG | 0.514559 | 7.1:-87847284 | MS.gene89376:CDS |
| ATATCTCTGAAATTGCCAAA+TGG | 0.515034 | 7.1:-87848906 | MS.gene89376:CDS |
| CTTTGAGTGTAAAATGAAAT+GGG | 0.517494 | 7.1:-87848883 | MS.gene89376:CDS |
| TAGCTTCACTCCCACGTCCA+TGG | 0.519057 | 7.1:+87849385 | None:intergenic |
| TGGACGTGGGAGTGAAGCTA+AGG | 0.521851 | 7.1:-87849382 | MS.gene89376:CDS |
| ATAAAATGCAACGATGATCA+AGG | 0.524313 | 7.1:-87848708 | MS.gene89376:CDS |
| CACGAGGTTGAATGGATAGC+AGG | 0.525210 | 7.1:+87849349 | None:intergenic |
| AATATAAAATCAGTTGATGA+AGG | 0.529972 | 7.1:-87848118 | MS.gene89376:intron |
| AGCACCATTCACCATGGACG+TGG | 0.531187 | 7.1:-87849396 | MS.gene89376:CDS |
| ACTCCCACGTCCATGGTGAA+TGG | 0.531455 | 7.1:+87849392 | None:intergenic |
| GCTGTAGATTCAGTAGAGGT+TGG | 0.536125 | 7.1:-87846084 | MS.gene89376:CDS |
| GAGCGACGAAAGTTCATATG+AGG | 0.536737 | 7.1:-87848020 | MS.gene89376:CDS |
| AAACCCCAAACGCACTTCCA+CGG | 0.540686 | 7.1:+87847281 | None:intergenic |
| GGTTGGTAACGACATGGCCG+TGG | 0.544149 | 7.1:-87847298 | MS.gene89376:CDS |
| TATCTCGTATATGGGGTGGT+TGG | 0.551855 | 7.1:-87847242 | MS.gene89376:CDS |
| GGTGCTGAAGCCACTGAAGA+AGG | 0.555891 | 7.1:-87848097 | MS.gene89376:CDS |
| AAGAAAGGGCAAGAGAAAAG+CGG | 0.556255 | 7.1:-87847969 | MS.gene89376:CDS |
| TGTGTTTATGCAGATTCAGA+AGG | 0.561273 | 7.1:-87846352 | MS.gene89376:intron |
| TGATTCAGCACCTTCTTCAG+TGG | 0.564692 | 7.1:+87848087 | None:intergenic |
| AGAAAGGGCAAGAGAAAAGC+GGG | 0.566412 | 7.1:-87847968 | MS.gene89376:intron |
| GTAAATTTGAGATGATTCAA+CGG | 0.588165 | 7.1:-87847176 | MS.gene89376:CDS |
| GGGACTGCAACAATAAGGGT+TGG | 0.589046 | 7.1:-87847315 | MS.gene89376:CDS |
| ATAGTAACATTGAATGACAT+TGG | 0.591520 | 7.1:+87847150 | None:intergenic |
| CATGGTTATAAAGACATTGG+AGG | 0.597695 | 7.1:-87847000 | MS.gene89376:intron |
| TGAAAATAGAGCAACAGTCA+TGG | 0.607309 | 7.1:-87846141 | MS.gene89376:CDS |
| TGTTACTATTACTCGTGTCA+AGG | 0.611046 | 7.1:-87847136 | MS.gene89376:CDS |
| TTATGTGAATTCCCTATACC+CGG | 0.613091 | 7.1:-87846296 | MS.gene89376:intron |
| AGGTAGTAACAAAGTAGCCA+TGG | 0.619467 | 7.1:-87847555 | MS.gene89376:CDS |
| TCCAAAAGAAAATTGTCTTG+GGG | 0.632665 | 7.1:-87846959 | MS.gene89376:CDS |
| CCAAAAGAAAATTGTCTTGG+GGG | 0.637715 | 7.1:-87846958 | MS.gene89376:intron |
| ACTTACCAAGAAATAGCCGT+TGG | 0.639701 | 7.1:+87847451 | None:intergenic |
| ATGTCACAATCTTACGCCAA+CGG | 0.652096 | 7.1:-87847467 | MS.gene89376:CDS |
| AAATTATCTCGTATATGGGG+TGG | 0.652351 | 7.1:-87847246 | MS.gene89376:CDS |
| GGACGTGGGAGTGAAGCTAA+GGG | 0.662883 | 7.1:-87849381 | MS.gene89376:CDS |
| CAACAAAGCACCATTCACCA+TGG | 0.667252 | 7.1:-87849402 | MS.gene89376:CDS |
| AGTCGCTGTAGATTCAGTAG+AGG | 0.668597 | 7.1:-87846088 | MS.gene89376:CDS |
| TCTTCATCTTGCAAATCACG+AGG | 0.677125 | 7.1:+87849333 | None:intergenic |
| AAATGGCAAAGAAAGCTCGA+AGG | 0.682114 | 7.1:-87847994 | MS.gene89376:CDS |
| AATAAGGGTTGGTAACGACA+TGG | 0.688747 | 7.1:-87847304 | MS.gene89376:CDS |
| GCACCATTCACCATGGACGT+GGG | 0.705453 | 7.1:-87849395 | MS.gene89376:CDS |
| TTTGCGGGATCGCTAAGATG+CGG | 0.709557 | 7.1:-87848819 | MS.gene89376:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTATTTCAAATTCAT+GGG | + | chr7.1:87848604-87848623 | None:intergenic | 10.0% |
| !! | ATTCATCTATAAATAAATAA+AGG | + | chr7.1:87846876-87846895 | None:intergenic | 10.0% |
| !! | TAAAAATTATTTCAAATTCA+TGG | + | chr7.1:87848605-87848624 | None:intergenic | 10.0% |
| !!! | AATATGTGATATATTTTTTT+AGG | - | chr7.1:87847703-87847722 | MS.gene89376:intron | 10.0% |
| !!! | AATATTATATTTTTATTTGC+AGG | - | chr7.1:87849181-87849200 | MS.gene89376:intron | 10.0% |
| !!! | CAAAAATTTAAGATAAATAT+AGG | + | chr7.1:87848896-87848915 | None:intergenic | 10.0% |
| !!! | GTATTTAAAATTAAAGATTA+AGG | + | chr7.1:87848582-87848601 | None:intergenic | 10.0% |
| !! | AAACATATATAGAGAAATAT+TGG | + | chr7.1:87846285-87846304 | None:intergenic | 15.0% |
| !! | ATTTGATTAGATTTATAGTT+AGG | + | chr7.1:87848705-87848724 | None:intergenic | 15.0% |
| !!! | ATGAATAATTTATGAGTTTT+TGG | - | chr7.1:87848535-87848554 | MS.gene89376:intron | 15.0% |
| !!! | ATTTTTTGGGTATTATAAAT+AGG | - | chr7.1:87848733-87848752 | MS.gene89376:CDS | 15.0% |
| !!! | CAAAAATTTGAGATTAATAT+AGG | + | chr7.1:87846915-87846934 | None:intergenic | 15.0% |
| !!! | CAAATATCTCTAAATTTTTT+GGG | - | chr7.1:87848720-87848739 | MS.gene89376:CDS | 15.0% |
| !!! | GATTATTTTTAGAAGATTTT+AGG | + | chr7.1:87847778-87847797 | None:intergenic | 15.0% |
| !!! | TAAAAGTTTCAGATTTTATA+GGG | + | chr7.1:87848777-87848796 | None:intergenic | 15.0% |
| !!! | TCAAATATCTCTAAATTTTT+TGG | - | chr7.1:87848719-87848738 | MS.gene89376:CDS | 15.0% |
| !!! | TTAAAAGTTTCAGATTTTAT+AGG | + | chr7.1:87848778-87848797 | None:intergenic | 15.0% |
| !!! | TTAAGTTTTTTTTCTTCATT+TGG | - | chr7.1:87848501-87848520 | MS.gene89376:intron | 15.0% |
| !!! | TTTTTTGGGTATTATAAATA+GGG | - | chr7.1:87848734-87848753 | MS.gene89376:CDS | 15.0% |
| !! | ACACAAAATGATAATATTCA+TGG | + | chr7.1:87849029-87849048 | None:intergenic | 20.0% |
| !! | AGAACAAATACATATTTATG+TGG | + | chr7.1:87846315-87846334 | None:intergenic | 20.0% |
| !! | AGATAAATTAAGTTAACATG+TGG | + | chr7.1:87847200-87847219 | None:intergenic | 20.0% |
| !! | GACATTGTAATTTCAAAAAA+GGG | + | chr7.1:87847914-87847933 | None:intergenic | 20.0% |
| !! | TGACATTGTAATTTCAAAAA+AGG | + | chr7.1:87847915-87847934 | None:intergenic | 20.0% |
| !!! | AATATAAAATCAGTTGATGA+AGG | - | chr7.1:87847278-87847297 | MS.gene89376:CDS | 20.0% |
| !!! | AATCTGAAACTTTTAAGTTT+AGG | - | chr7.1:87848782-87848801 | MS.gene89376:CDS | 20.0% |
| !!! | ATCTGAAACTTTTAAGTTTA+GGG | - | chr7.1:87848783-87848802 | MS.gene89376:CDS | 20.0% |
| !!! | TAACAATCAGACTTTAAAAA+GGG | + | chr7.1:87847235-87847254 | None:intergenic | 20.0% |
| !!! | TCTTCTGGTTATTATTATTT+AGG | - | chr7.1:87846134-87846153 | MS.gene89376:CDS | 20.0% |
| !!! | TGTTAGGATATTCAAATTTT+TGG | - | chr7.1:87846249-87846268 | MS.gene89376:intron | 20.0% |
| !!! | TTAACAATCAGACTTTAAAA+AGG | + | chr7.1:87847236-87847255 | None:intergenic | 20.0% |
| !!! | TTCATCAACTGATTTTATAT+TGG | + | chr7.1:87847279-87847298 | None:intergenic | 20.0% |
| ! | AATTTCAGAGATATTGGATT+AGG | + | chr7.1:87846484-87846503 | None:intergenic | 25.0% |
| ! | ACATATGTAATTAATCCTAC+CGG | + | chr7.1:87849122-87849141 | None:intergenic | 25.0% |
| ! | ATAAAGTTAACAAGCTTTCA+AGG | + | chr7.1:87847141-87847160 | None:intergenic | 25.0% |
| ! | ATAGTAACATTGAATGACAT+TGG | + | chr7.1:87848249-87848268 | None:intergenic | 25.0% |
| ! | CAAAAATTATCTCGTATATG+GGG | - | chr7.1:87848147-87848166 | MS.gene89376:intron | 25.0% |
| ! | CAATGAATTCCAAATAAACA+AGG | + | chr7.1:87846397-87846416 | None:intergenic | 25.0% |
| ! | CCAAAAATTATCTCGTATAT+GGG | - | chr7.1:87848146-87848165 | MS.gene89376:intron | 25.0% |
| ! | CCAAATGAATTTATGAAAAG+AGG | - | chr7.1:87849209-87849228 | MS.gene89376:intron | 25.0% |
| ! | CTAAAATTGCTTCTCAATTT+AGG | + | chr7.1:87847637-87847656 | None:intergenic | 25.0% |
| ! | CTTTGAGTGTAAAATGAAAT+GGG | - | chr7.1:87846513-87846532 | MS.gene89376:intron | 25.0% |
| ! | GAAATATTCAAAGTGAAGAT+TGG | - | chr7.1:87849347-87849366 | MS.gene89376:CDS | 25.0% |
| ! | GAACAAATTACTTACTATCA+TGG | + | chr7.1:87848972-87848991 | None:intergenic | 25.0% |
| ! | TAAAAGAAGAAACTGAATAC+TGG | + | chr7.1:87848674-87848693 | None:intergenic | 25.0% |
| ! | TAGAGGTTGGAAAAAATTTA+CGG | - | chr7.1:87849325-87849344 | MS.gene89376:intron | 25.0% |
| ! | TAGATTGAAAGATTTCTTGT+TGG | - | chr7.1:87846210-87846229 | MS.gene89376:intron | 25.0% |
| ! | TATTTCATTTATCCATGACA+TGG | - | chr7.1:87848378-87848397 | MS.gene89376:intron | 25.0% |
| ! | TCATTCAAGGTTAAAATTTG+TGG | - | chr7.1:87848999-87849018 | MS.gene89376:intron | 25.0% |
| ! | TCTGAATTGGAAAAAATTTG+CGG | - | chr7.1:87846561-87846580 | MS.gene89376:intron | 25.0% |
| !! | AATAGGGTTAAATGTGTTTT+TGG | - | chr7.1:87848750-87848769 | MS.gene89376:CDS | 25.0% |
| !! | AGCAAATTAACTCATTTTCA+TGG | + | chr7.1:87847100-87847119 | None:intergenic | 25.0% |
| !! | CATTTTCATGGTAACATTTA+AGG | + | chr7.1:87847088-87847107 | None:intergenic | 25.0% |
| !! | CCATATACGAGATAATTTTT+GGG | + | chr7.1:87848148-87848167 | None:intergenic | 25.0% |
| !! | CCTCTTTTCATAAATTCATT+TGG | + | chr7.1:87849212-87849231 | None:intergenic | 25.0% |
| !! | CTTGTTTATTTGGAATTCAT+TGG | - | chr7.1:87846395-87846414 | MS.gene89376:intron | 25.0% |
| !! | GTAAATTTGAGATGATTCAA+CGG | - | chr7.1:87848220-87848239 | MS.gene89376:intron | 25.0% |
| !! | TAAACTATGATTTGAAACAG+TGG | - | chr7.1:87848016-87848035 | MS.gene89376:CDS | 25.0% |
| !! | TAATTTGTATGCTTCATTCA+AGG | - | chr7.1:87847045-87847064 | MS.gene89376:intron | 25.0% |
| !! | TACATGTACTTCTAACTTTT+TGG | + | chr7.1:87849156-87849175 | None:intergenic | 25.0% |
| !! | TGATTTTCATGTCATCATAT+TGG | - | chr7.1:87846633-87846652 | MS.gene89376:intron | 25.0% |
| !! | TTGTATAGACCTTGTTTATT+TGG | - | chr7.1:87846385-87846404 | MS.gene89376:intron | 25.0% |
| !! | TTTTCTCTACACATCATTTT+TGG | - | chr7.1:87847661-87847680 | MS.gene89376:intron | 25.0% |
| !!! | AACACTTGATCGATTTTAAT+GGG | - | chr7.1:87848061-87848080 | MS.gene89376:CDS | 25.0% |
| !!! | TCTCTTTTTTTGGTAGATTT+AGG | - | chr7.1:87847496-87847515 | MS.gene89376:CDS | 25.0% |
| AACTGAATACTGGATAAGTT+AGG | + | chr7.1:87848664-87848683 | None:intergenic | 30.0% | |
| AAGTTCATATGAGGATGAAA+TGG | - | chr7.1:87847385-87847404 | MS.gene89376:intron | 30.0% | |
| ATAAAATGCAACGATGATCA+AGG | - | chr7.1:87846688-87846707 | MS.gene89376:intron | 30.0% | |
| ATGTCTTTATAACCATGTCA+TGG | + | chr7.1:87848393-87848412 | None:intergenic | 30.0% | |
| ATTTCTTGTTGGAGTATGTT+TGG | - | chr7.1:87846221-87846240 | MS.gene89376:intron | 30.0% | |
| CATATGTAATTAATCCTACC+GGG | + | chr7.1:87849121-87849140 | None:intergenic | 30.0% | |
| CATTAACAGTTTCAGATGTT+GGG | + | chr7.1:87847886-87847905 | None:intergenic | 30.0% | |
| CCCAAAAATTATCTCGTATA+TGG | - | chr7.1:87848145-87848164 | MS.gene89376:intron | 30.0% | |
| CTGAATTGGAAAAAATTTGC+GGG | - | chr7.1:87846562-87846581 | MS.gene89376:intron | 30.0% | |
| GTCCAAAAGAAAATTGTCTT+GGG | - | chr7.1:87848436-87848455 | MS.gene89376:intron | 30.0% | |
| GTGTATATGATGTGAAAATC+TGG | - | chr7.1:87846945-87846964 | MS.gene89376:intron | 30.0% | |
| TACAACGTCATAATGATATC+TGG | - | chr7.1:87846536-87846555 | MS.gene89376:intron | 30.0% | |
| TCATTAACAGTTTCAGATGT+TGG | + | chr7.1:87847887-87847906 | None:intergenic | 30.0% | |
| TCATTCAAGGTCAAAATTTG+TGG | - | chr7.1:87847058-87847077 | MS.gene89376:intron | 30.0% | |
| TCCAAAAGAAAATTGTCTTG+GGG | - | chr7.1:87848437-87848456 | MS.gene89376:intron | 30.0% | |
| TGACATGGTTATAAAGACAT+TGG | - | chr7.1:87848393-87848412 | MS.gene89376:intron | 30.0% | |
| TTGTTCAAATGCTTCATTCA+AGG | - | chr7.1:87848986-87849005 | MS.gene89376:intron | 30.0% | |
| TTTGGCAATTTCAGAGATAT+TGG | + | chr7.1:87846490-87846509 | None:intergenic | 30.0% | |
| ! | AACTTTTCGACAAAGTTTCT+TGG | + | chr7.1:87846448-87846467 | None:intergenic | 30.0% |
| ! | AGGATGTCATGAAAATTTTG+TGG | - | chr7.1:87849229-87849248 | MS.gene89376:intron | 30.0% |
| ! | ATTTTACACTCAAAGCCATT+TGG | + | chr7.1:87846508-87846527 | None:intergenic | 30.0% |
| ! | CAAGACAATTTTCTTTTGGA+CGG | + | chr7.1:87848437-87848456 | None:intergenic | 30.0% |
| ! | CCCATATACGAGATAATTTT+TGG | + | chr7.1:87848149-87848168 | None:intergenic | 30.0% |
| ! | GAAACTTTGTCGAAAAGTTT+TGG | - | chr7.1:87846449-87846468 | MS.gene89376:intron | 30.0% |
| ! | GCGATTTTTCTCTCTTTTTT+TGG | - | chr7.1:87847486-87847505 | MS.gene89376:CDS | 30.0% |
| ! | GCTTTGAGTGTAAAATGAAA+TGG | - | chr7.1:87846512-87846531 | MS.gene89376:intron | 30.0% |
| ! | TACTTTTCCAGTACAAATGT+GGG | - | chr7.1:87846608-87846627 | MS.gene89376:intron | 30.0% |
| ! | TGTTCTCTTGAAAAGTCTTT+TGG | + | chr7.1:87848045-87848064 | None:intergenic | 30.0% |
| ! | TTCTGTCTATTTTCTTCTTC+TGG | - | chr7.1:87846119-87846138 | MS.gene89376:CDS | 30.0% |
| ! | TTTGTTCTAGACTTCAAATG+TGG | - | chr7.1:87846327-87846346 | MS.gene89376:CDS | 30.0% |
| !! | ATATCTCTGAAATTGCCAAA+TGG | - | chr7.1:87846490-87846509 | MS.gene89376:intron | 30.0% |
| !! | GAACACTTGATCGATTTTAA+TGG | - | chr7.1:87848060-87848079 | MS.gene89376:CDS | 30.0% |
| !! | TCTTTTTAAGAGTTCTTCAC+TGG | - | chr7.1:87847574-87847593 | MS.gene89376:intron | 30.0% |
| !! | TTACTTTTCCAGTACAAATG+TGG | - | chr7.1:87846607-87846626 | MS.gene89376:intron | 30.0% |
| !!! | TTTTAAGTTTAGGGCTTGTT+TGG | - | chr7.1:87848792-87848811 | MS.gene89376:CDS | 30.0% |
| AAATTATCTCGTATATGGGG+TGG | - | chr7.1:87848150-87848169 | MS.gene89376:intron | 35.0% | |
| AATTAATCCTACCGGGTATA+GGG | + | chr7.1:87849114-87849133 | None:intergenic | 35.0% | |
| AGTTAATGCCTAAACTTTGC+AGG | - | chr7.1:87847821-87847840 | MS.gene89376:intron | 35.0% | |
| CATGGTTATAAAGACATTGG+AGG | - | chr7.1:87848396-87848415 | MS.gene89376:intron | 35.0% | |
| CCAAAAGAAAATTGTCTTGG+GGG | - | chr7.1:87848438-87848457 | MS.gene89376:intron | 35.0% | |
| CGTCCAAAAGAAAATTGTCT+TGG | - | chr7.1:87848435-87848454 | MS.gene89376:intron | 35.0% | |
| GTGTATATGATGTGAAAGTC+TGG | - | chr7.1:87846985-87847004 | MS.gene89376:CDS | 35.0% | |
| TAATGGGACTGCAACAATAA+GGG | - | chr7.1:87848077-87848096 | MS.gene89376:CDS | 35.0% | |
| TAATTAATCCTACCGGGTAT+AGG | + | chr7.1:87849115-87849134 | None:intergenic | 35.0% | |
| TGAAAATAGAGCAACAGTCA+TGG | - | chr7.1:87849255-87849274 | MS.gene89376:intron | 35.0% | |
| TGTGTTTATGCAGATTCAGA+AGG | - | chr7.1:87849044-87849063 | MS.gene89376:intron | 35.0% | |
| TGTTACTACCTGCAAAGTTT+AGG | + | chr7.1:87847832-87847851 | None:intergenic | 35.0% | |
| TGTTACTATTACTCGTGTCA+AGG | - | chr7.1:87848260-87848279 | MS.gene89376:intron | 35.0% | |
| TTAATGGGACTGCAACAATA+AGG | - | chr7.1:87848076-87848095 | MS.gene89376:CDS | 35.0% | |
| TTATGTGAATTCCCTATACC+CGG | - | chr7.1:87849100-87849119 | MS.gene89376:intron | 35.0% | |
| TTTGAAAATGTGCTTGCAGA+TGG | - | chr7.1:87846420-87846439 | MS.gene89376:intron | 35.0% | |
| ! | AGTATGTTTGGTTGGTTGTT+AGG | - | chr7.1:87846233-87846252 | MS.gene89376:intron | 35.0% |
| ! | ATGATATCTGGCTTCTGAAT+TGG | - | chr7.1:87846548-87846567 | MS.gene89376:intron | 35.0% |
| ! | GAAAAATCGCCTGAGAATTT+TGG | + | chr7.1:87847476-87847495 | None:intergenic | 35.0% |
| ! | GTTTTCTTGAACTTCTTCTG+TGG | + | chr7.1:87847348-87847367 | None:intergenic | 35.0% |
| !! | AATGGTGCTTTGTTGTTGAT+AGG | + | chr7.1:87845989-87846008 | None:intergenic | 35.0% |
| AAAGCTCGAAGGACAAGAAA+GGG | - | chr7.1:87847413-87847432 | MS.gene89376:intron | 40.0% | |
| AAATGGCAAAGAAAGCTCGA+AGG | - | chr7.1:87847402-87847421 | MS.gene89376:intron | 40.0% | |
| AAGAAAGGGCAAGAGAAAAG+CGG | - | chr7.1:87847427-87847446 | MS.gene89376:intron | 40.0% | |
| AATCAGACCCACATTTGTAC+TGG | + | chr7.1:87846618-87846637 | None:intergenic | 40.0% | |
| AATCTACAGCGACTGATACT+AGG | + | chr7.1:87849302-87849321 | None:intergenic | 40.0% | |
| ACTCGTGTCAAGGAATTACT+AGG | - | chr7.1:87848270-87848289 | MS.gene89376:intron | 40.0% | |
| ACTTACCAAGAAATAGCCGT+TGG | + | chr7.1:87847948-87847967 | None:intergenic | 40.0% | |
| AGGTAGTAACAAAGTAGCCA+TGG | - | chr7.1:87847841-87847860 | MS.gene89376:intron | 40.0% | |
| ATCACCCAACCAAAATTCTC+AGG | - | chr7.1:87847464-87847483 | MS.gene89376:CDS | 40.0% | |
| ATGTCACAATCTTACGCCAA+CGG | - | chr7.1:87847929-87847948 | MS.gene89376:intron | 40.0% | |
| CTTGTTGGAGTATGTTTGGT+TGG | - | chr7.1:87846225-87846244 | MS.gene89376:intron | 40.0% | |
| TCTCCTGGAACTGATTGATA+AGG | - | chr7.1:87849379-87849398 | MS.gene89376:CDS | 40.0% | |
| TCTTCATCTTGCAAATCACG+AGG | + | chr7.1:87846066-87846085 | None:intergenic | 40.0% | |
| TGTCCTTATCAATCAGTTCC+AGG | + | chr7.1:87849385-87849404 | None:intergenic | 40.0% | |
| TTGCAAATCACGAGGTTGAA+TGG | + | chr7.1:87846058-87846077 | None:intergenic | 40.0% | |
| ! | CCCCCAAGACAATTTTCTTT+TGG | + | chr7.1:87848441-87848460 | None:intergenic | 40.0% |
| !! | AATAAGGGTTGGTAACGACA+TGG | - | chr7.1:87848092-87848111 | MS.gene89376:CDS | 40.0% |
| !! | AATCGCCTGAGAATTTTGGT+TGG | + | chr7.1:87847472-87847491 | None:intergenic | 40.0% |
| !! | TTTTCTAGCCTTCTTCACCA+TGG | + | chr7.1:87847861-87847880 | None:intergenic | 40.0% |
| !!! | ATCGCCTGAGAATTTTGGTT+GGG | + | chr7.1:87847471-87847490 | None:intergenic | 40.0% |
| AGAAAGGGCAAGAGAAAAGC+GGG | - | chr7.1:87847428-87847447 | MS.gene89376:intron | 45.0% | |
| AGTCGCTGTAGATTCAGTAG+AGG | - | chr7.1:87849308-87849327 | MS.gene89376:intron | 45.0% | |
| CAAAGTAGCCATGGTGAAGA+AGG | - | chr7.1:87847850-87847869 | MS.gene89376:intron | 45.0% | |
| GAAAGCTCGAAGGACAAGAA+AGG | - | chr7.1:87847412-87847431 | MS.gene89376:intron | 45.0% | |
| GAGCGACGAAAGTTCATATG+AGG | - | chr7.1:87847376-87847395 | MS.gene89376:intron | 45.0% | |
| GATTGGAGATACTTGTCTCC+TGG | - | chr7.1:87849364-87849383 | MS.gene89376:CDS | 45.0% | |
| GCTGTAGATTCAGTAGAGGT+TGG | - | chr7.1:87849312-87849331 | MS.gene89376:intron | 45.0% | |
| GGTGCACATAACTTACTGCT+GGG | + | chr7.1:87847179-87847198 | None:intergenic | 45.0% | |
| TATCTCGTATATGGGGTGGT+TGG | - | chr7.1:87848154-87848173 | MS.gene89376:intron | 45.0% | |
| TGATTCAGCACCTTCTTCAG+TGG | + | chr7.1:87847312-87847331 | None:intergenic | 45.0% | |
| TGGTGCACATAACTTACTGC+TGG | + | chr7.1:87847180-87847199 | None:intergenic | 45.0% | |
| ! | CAACAAAGCACCATTCACCA+TGG | - | chr7.1:87845994-87846013 | MS.gene89376:CDS | 45.0% |
| !! | CTTGCCTGACACTTTTTGCT+TGG | + | chr7.1:87846830-87846849 | None:intergenic | 45.0% |
| !! | GCAACCAAGCAAAAAGTGTC+AGG | - | chr7.1:87846823-87846842 | MS.gene89376:intron | 45.0% |
| !! | TTACGCCAACGGCTATTTCT+TGG | - | chr7.1:87847940-87847959 | MS.gene89376:intron | 45.0% |
| AAACCCCAAACGCACTTCCA+CGG | + | chr7.1:87848118-87848137 | None:intergenic | 50.0% | |
| ACATTGGAGGAACGCCTTCT+GGG | - | chr7.1:87848409-87848428 | MS.gene89376:intron | 50.0% | |
| CACGAGGTTGAATGGATAGC+AGG | + | chr7.1:87846050-87846069 | None:intergenic | 50.0% | |
| GGGACTGCAACAATAAGGGT+TGG | - | chr7.1:87848081-87848100 | MS.gene89376:CDS | 50.0% | |
| GTGAATTCCCTATACCCGGT+AGG | - | chr7.1:87849104-87849123 | MS.gene89376:intron | 50.0% | |
| TTTGCGGGATCGCTAAGATG+CGG | - | chr7.1:87846577-87846596 | MS.gene89376:intron | 50.0% | |
| ACTCCCACGTCCATGGTGAA+TGG | + | chr7.1:87846007-87846026 | None:intergenic | 55.0% | |
| AGCACCATTCACCATGGACG+TGG | - | chr7.1:87846000-87846019 | MS.gene89376:CDS | 55.0% | |
| GACATTGGAGGAACGCCTTC+TGG | - | chr7.1:87848408-87848427 | MS.gene89376:intron | 55.0% | |
| GCACCATTCACCATGGACGT+GGG | - | chr7.1:87846001-87846020 | MS.gene89376:CDS | 55.0% | |
| GGACGTGGGAGTGAAGCTAA+GGG | - | chr7.1:87846015-87846034 | MS.gene89376:CDS | 55.0% | |
| GGGCAAGAGAAAAGCGGGTA+TGG | - | chr7.1:87847433-87847452 | MS.gene89376:intron | 55.0% | |
| TAGCTTCACTCCCACGTCCA+TGG | + | chr7.1:87846014-87846033 | None:intergenic | 55.0% | |
| TGGACGTGGGAGTGAAGCTA+AGG | - | chr7.1:87846014-87846033 | MS.gene89376:CDS | 55.0% | |
| ! | ATGGCCGTGGAAGTGCGTTT+GGG | - | chr7.1:87848111-87848130 | MS.gene89376:intron | 55.0% |
| ! | GGTGCTGAAGCCACTGAAGA+AGG | - | chr7.1:87847299-87847318 | MS.gene89376:CDS | 55.0% |
| ! | TCTTTTGGACGGCTCCCAGA+AGG | + | chr7.1:87848426-87848445 | None:intergenic | 55.0% |
| ! | CATGGCCGTGGAAGTGCGTT+TGG | - | chr7.1:87848110-87848129 | MS.gene89376:intron | 60.0% |
| ! | TGGCCGTGGAAGTGCGTTTG+GGG | - | chr7.1:87848112-87848131 | MS.gene89376:intron | 60.0% |
| !! | GGTTGGTAACGACATGGCCG+TGG | - | chr7.1:87848098-87848117 | MS.gene89376:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 87845982 | 87849436 | 87845982 | ID=MS.gene89376 |
| chr7.1 | mRNA | 87845982 | 87849436 | 87845982 | ID=MS.gene89376.t1;Parent=MS.gene89376 |
| chr7.1 | exon | 87849329 | 87849436 | 87849329 | ID=MS.gene89376.t1.exon1;Parent=MS.gene89376.t1 |
| chr7.1 | CDS | 87849329 | 87849436 | 87849329 | ID=cds.MS.gene89376.t1;Parent=MS.gene89376.t1 |
| chr7.1 | exon | 87848574 | 87848979 | 87848574 | ID=MS.gene89376.t1.exon2;Parent=MS.gene89376.t1 |
| chr7.1 | CDS | 87848574 | 87848979 | 87848574 | ID=cds.MS.gene89376.t1;Parent=MS.gene89376.t1 |
| chr7.1 | exon | 87847969 | 87848127 | 87847969 | ID=MS.gene89376.t1.exon3;Parent=MS.gene89376.t1 |
| chr7.1 | CDS | 87847969 | 87848127 | 87847969 | ID=cds.MS.gene89376.t1;Parent=MS.gene89376.t1 |
| chr7.1 | exon | 87847457 | 87847575 | 87847457 | ID=MS.gene89376.t1.exon4;Parent=MS.gene89376.t1 |
| chr7.1 | CDS | 87847457 | 87847575 | 87847457 | ID=cds.MS.gene89376.t1;Parent=MS.gene89376.t1 |
| chr7.1 | exon | 87847127 | 87847382 | 87847127 | ID=MS.gene89376.t1.exon5;Parent=MS.gene89376.t1 |
| chr7.1 | CDS | 87847127 | 87847382 | 87847127 | ID=cds.MS.gene89376.t1;Parent=MS.gene89376.t1 |
| chr7.1 | exon | 87846959 | 87847009 | 87846959 | ID=MS.gene89376.t1.exon6;Parent=MS.gene89376.t1 |
| chr7.1 | CDS | 87846959 | 87847009 | 87846959 | ID=cds.MS.gene89376.t1;Parent=MS.gene89376.t1 |
| chr7.1 | exon | 87846297 | 87846361 | 87846297 | ID=MS.gene89376.t1.exon7;Parent=MS.gene89376.t1 |
| chr7.1 | CDS | 87846297 | 87846361 | 87846297 | ID=cds.MS.gene89376.t1;Parent=MS.gene89376.t1 |
| chr7.1 | exon | 87845982 | 87846215 | 87845982 | ID=MS.gene89376.t1.exon8;Parent=MS.gene89376.t1 |
| chr7.1 | CDS | 87845982 | 87846215 | 87845982 | ID=cds.MS.gene89376.t1;Parent=MS.gene89376.t1 |
| Gene Sequence |
| Protein sequence |
