AlfalfaGEDB | MS.gene31881

M. sativa cultivar XinJiangDaYe / MS.gene31881

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31881.t1	RHN78223.1	75.3	454	82	4	1	440	1	438	2.10E-176	628.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31881.t1	Q8L3W1	24.7	336	206	10	7	298	4	336	1.1e-14	82.8

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31881.t1	A0A396JPN4	75.3	454	82	4	1	440	1	438	1.5e-176	628.6

TFs/TRs:

Gene ID	Type	Classification
MS.gene31881.t1	TF	B3

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051957	MS.gene31881	0.81472	1.33E-51	-1.69E-46
MS.gene052519	MS.gene31881	0.803293	3.74E-49	-1.69E-46
MS.gene052829	MS.gene31881	0.924534	6.19E-90	-1.69E-46
MS.gene052843	MS.gene31881	0.959061	4.98E-117	-1.69E-46
MS.gene053883	MS.gene31881	0.801917	7.18E-49	-1.69E-46
MS.gene053974	MS.gene31881	0.806858	6.71E-50	-1.69E-46
MS.gene054775	MS.gene31881	0.801972	6.99E-49	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene040683	MS.gene31881	PPI
MS.gene068149	MS.gene31881	PPI
MS.gene052831	MS.gene31881	PPI
MS.gene052829	MS.gene31881	PPI
MS.gene31881	MS.gene89376	PPI
MS.gene040687	MS.gene31881	PPI
MS.gene052843	MS.gene31881	PPI
MS.gene31881	MS.gene31896	PPI
MS.gene31880	MS.gene31881	PPI
MS.gene054682	MS.gene31881	PPI
MS.gene052850	MS.gene31881	PPI
MS.gene041027	MS.gene31881	PPI
MS.gene052833	MS.gene31881	PPI
MS.gene026326	MS.gene31881	PPI
MS.gene026344	MS.gene31881	PPI
MS.gene052846	MS.gene31881	PPI
MS.gene068154	MS.gene31881	PPI
MS.gene31881	MS.gene31880	PPI
MS.gene040688	MS.gene31881	PPI
MS.gene073650	MS.gene31881	PPI
MS.gene31884	MS.gene31881	PPI
MS.gene42437	MS.gene31881	PPI
MS.gene073646	MS.gene31881	PPI
MS.gene84056	MS.gene31881	PPI
MS.gene31896	MS.gene31881	PPI
MS.gene073655	MS.gene31881	PPI
MS.gene068155	MS.gene31881	PPI
MS.gene052851	MS.gene31881	PPI
MS.gene034709	MS.gene31881	PPI
MS.gene052828	MS.gene31881	PPI
MS.gene31882	MS.gene31881	PPI
MS.gene31890	MS.gene31881	PPI
MS.gene31887	MS.gene31881	PPI
MS.gene052842	MS.gene31881	PPI
MS.gene31881	MS.gene073652	PPI
MS.gene84060	MS.gene31881	PPI
MS.gene068150	MS.gene31881	PPI
MS.gene026341	MS.gene31881	PPI
MS.gene41005	MS.gene31881	PPI
MS.gene040691	MS.gene31881	PPI
MS.gene026334	MS.gene31881	PPI
MS.gene041025	MS.gene31881	PPI
MS.gene067200	MS.gene31881	PPI
MS.gene99290	MS.gene31881	PPI
MS.gene31885	MS.gene31881	PPI
MS.gene067203	MS.gene31881	PPI
MS.gene067204	MS.gene31881	PPI
MS.gene052883	MS.gene31881	PPI
MS.gene89376	MS.gene31881	PPI
MS.gene073653	MS.gene31881	PPI
MS.gene073652	MS.gene31881	PPI
MS.gene052884	MS.gene31881	PPI
MS.gene052832	MS.gene31881	PPI
MS.gene026345	MS.gene31881	PPI
MS.gene026340	MS.gene31881	PPI
MS.gene026323	MS.gene31881	PPI
MS.gene040686	MS.gene31881	PPI
MS.gene068144	MS.gene31881	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31881.t1	MTR_1g035570	71.652	448	70	5	1	438	1	401	0.0	602
MS.gene31881.t1	MTR_1g035490	67.702	322	74	7	131	433	20	330	3.69e-132	384
MS.gene31881.t1	MTR_1g035640	46.092	499	168	11	1	432	1	465	4.98e-127	376
MS.gene31881.t1	MTR_1g035620	43.363	452	190	12	1	430	1	408	2.67e-108	326
MS.gene31881.t1	MTR_1g050845	41.905	420	166	12	1	398	1	364	4.55e-85	277
MS.gene31881.t1	MTR_6g061070	35.333	450	253	12	14	431	27	470	9.53e-76	244
MS.gene31881.t1	MTR_1g035650	42.857	231	91	5	1	218	1	203	2.57e-48	164
MS.gene31881.t1	MTR_8g103940	27.115	461	277	14	14	430	48	493	8.65e-39	146
MS.gene31881.t1	MTR_1g108780	27.409	467	261	16	20	430	12	456	3.09e-38	144
MS.gene31881.t1	MTR_7g050710	31.988	322	180	11	9	308	13	317	1.24e-34	131
MS.gene31881.t1	MTR_5g044670	30.132	302	179	7	14	302	25	307	8.79e-34	129
MS.gene31881.t1	MTR_7g050560	32.877	292	166	9	14	298	22	290	8.07e-33	126
MS.gene31881.t1	MTR_3g098790	31.741	293	177	8	14	298	22	299	1.10e-32	126
MS.gene31881.t1	MTR_7g050590	31.959	291	173	9	21	298	2	280	6.86e-31	120
MS.gene31881.t1	MTR_1g035510	34.247	219	125	8	21	234	2	206	1.84e-29	115
MS.gene31881.t1	MTR_7g050720	31.230	317	197	14	1	298	1	315	3.94e-29	116
MS.gene31881.t1	MTR_7g050580	33.447	293	163	10	14	298	22	290	6.46e-29	115
MS.gene31881.t1	MTR_1g035480	48.246	114	56	2	14	127	26	136	1.79e-28	110
MS.gene31881.t1	MTR_3g061310	27.645	293	187	9	9	296	12	284	2.18e-27	110
MS.gene31881.t1	MTR_1g033740	42.735	117	64	2	14	130	31	144	1.27e-26	106
MS.gene31881.t1	MTR_3g061340	27.609	297	171	13	9	296	12	273	1.10e-25	105
MS.gene31881.t1	MTR_3g061350	26.351	296	186	8	9	296	12	283	1.80e-25	105
MS.gene31881.t1	MTR_1g035460	24.088	411	246	11	21	381	2	396	1.22e-24	105
MS.gene31881.t1	MTR_3g061320	25.256	293	188	8	9	296	12	278	3.75e-24	101
MS.gene31881.t1	MTR_1g035500	44.262	122	64	3	5	126	26	143	7.46e-24	98.6
MS.gene31881.t1	MTR_4g119990	27.362	307	193	9	9	296	15	310	1.26e-23	102
MS.gene31881.t1	MTR_3g061370	24.834	302	183	8	9	296	9	280	1.59e-23	100
MS.gene31881.t1	MTR_6g043890	26.690	281	185	7	13	284	23	291	1.27e-22	98.6
MS.gene31881.t1	MTR_1g035470	40.909	110	62	2	21	130	2	108	2.71e-22	92.8
MS.gene31881.t1	MTR_1g035520	26.582	316	199	8	5	296	76	382	4.64e-21	94.7
MS.gene31881.t1	MTR_1g035520	42.478	113	55	3	329	431	271	383	2.32e-17	84.0
MS.gene31881.t1	MTR_3g061290	37.815	119	68	3	9	123	12	128	3.07e-19	85.9
MS.gene31881.t1	MTR_3g061330	31.548	168	105	5	9	168	12	177	1.09e-18	85.5
MS.gene31881.t1	MTR_1g034210	26.027	365	199	13	6	303	4	364	2.29e-18	86.7
MS.gene31881.t1	MTR_3g005480	23.891	293	155	8	14	299	30	261	5.07e-14	72.4
MS.gene31881.t1	MTR_1g021270	23.659	317	191	10	17	286	27	339	5.71e-14	74.3
MS.gene31881.t1	MTR_4g068320	36.634	101	58	2	7	101	4	104	4.21e-13	71.2
MS.gene31881.t1	MTR_7g050640	40.541	111	56	4	3	103	5	115	6.19e-13	65.5
MS.gene31881.t1	MTR_1g034240	34.234	111	66	3	7	110	5	115	1.59e-12	69.3
MS.gene31881.t1	MTR_3g005490	23.208	293	160	8	14	301	30	262	3.59e-12	67.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31881.t1	AT3G18990	26.023	342	200	10	7	301	4	339	5.20e-22	97.4
MS.gene31881.t1	AT3G18990	26.254	339	197	10	7	298	4	336	9.07e-22	96.3

Find 74 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCATTAGCTGTGCTTCTTTA+AGG	0.068553	1.2:+20457948	MS.gene31881:CDS
TTTGCAAAGCCTTTCAAATA+TGG	0.180110	1.2:+20455771	MS.gene31881:CDS
AAATATCTTGGAGTTGAAAA+TGG	0.201158	1.2:+20457749	MS.gene31881:CDS
TATTTCTCCACATATTTCTT+TGG	0.248757	1.2:-20455636	None:intergenic
TTCATCAACTGATTTGATAT+TGG	0.261684	1.2:-20455877	None:intergenic
CATTAACAGCTTCAGATCTT+AGG	0.270045	1.2:-20456480	None:intergenic
AGAAATATGTGGAGAAATAT+TGG	0.281812	1.2:+20455640	MS.gene31881:CDS
TGGAGAGTAATGGTGATATT+TGG	0.287546	1.2:+20455727	MS.gene31881:CDS
TTAATGGAACCACAACAATA+AGG	0.298328	1.2:+20456673	MS.gene31881:CDS
GTGTTTGATGTTTCAATTGT+AGG	0.300485	1.2:+20457918	MS.gene31881:CDS
CTCTTAACTTTCAAATTCAT+TGG	0.314459	1.2:+20455798	MS.gene31881:CDS
TTAGGAAACTTAAGGAATAT+AGG	0.318222	1.2:-20455678	None:intergenic
ATAGTAACATTGAATGAAAT+TGG	0.319993	1.2:-20456843	None:intergenic
AGAAAACCTAGTGATTTCTT+TGG	0.323706	1.2:-20456891	None:intergenic
AGAGCAATACCCTTTACTTT+TGG	0.331691	1.2:-20457082	None:intergenic
CCTAGTGATTTCTTTGGCTT+TGG	0.332979	1.2:-20456885	None:intergenic
CTGGTCCTTTGAGTTTGCTT+TGG	0.341746	1.2:-20456062	None:intergenic
TAGGAAACTTAAGGAATATA+GGG	0.346499	1.2:-20455677	None:intergenic
TGTTCTCTTGAAAACTCATT+TGG	0.346666	1.2:-20456639	None:intergenic
AATATCTTGGAGTTGAAAAT+GGG	0.359463	1.2:+20457750	MS.gene31881:CDS
ACTTTCTTCACCTTCTTCAA+TGG	0.380996	1.2:-20456000	None:intergenic
TCATGATTCATAAACTCCTT+TGG	0.383485	1.2:-20457726	None:intergenic
TAATGGAACCACAACAATAA+GGG	0.391268	1.2:+20456674	MS.gene31881:CDS
TATGAATCATGAAAATATCT+TGG	0.394934	1.2:+20457737	MS.gene31881:CDS
CAACACCGTTAGGAAACTTA+AGG	0.403140	1.2:-20455686	None:intergenic
ATAGTTTATTTCTAAAGTAT+TGG	0.406626	1.2:-20455853	None:intergenic
CCTTAAAGAAGCACAGCTAA+TGG	0.407485	1.2:-20457948	None:intergenic
GTGGTGGATGGAAAATATTC+AGG	0.420444	1.2:+20456763	MS.gene31881:CDS
AAAGAATGCAAAGTGGAGAT+TGG	0.431700	1.2:+20457855	MS.gene31881:CDS
AAATATTATGAGAGTCTTTG+TGG	0.437608	1.2:+20457798	MS.gene31881:CDS
AGTCTTTGTGGCTGTAAGTT+CGG	0.438865	1.2:+20457810	MS.gene31881:CDS
AAGATGATCCTATGAAAATC+TGG	0.438926	1.2:-20455472	None:intergenic
CAAACTCAAAGGACCAGAAA+TGG	0.451853	1.2:+20456068	MS.gene31881:CDS
TTAACTTTCAAATTCATTGG+TGG	0.475675	1.2:+20455801	MS.gene31881:CDS
AGGAGCCATCCAAAAGTAAA+GGG	0.477165	1.2:+20457073	MS.gene31881:CDS
TAGGAGCCATCCAAAAGTAA+AGG	0.478853	1.2:+20457072	MS.gene31881:CDS
ATTACCAACCCTTATTGTTG+TGG	0.480026	1.2:-20456682	None:intergenic
CAAAGTGGCCATGGTAAAGA+AGG	0.488314	1.2:+20456447	MS.gene31881:CDS
TGAAAATGGGGAGAAAATCA+TGG	0.492046	1.2:+20457763	MS.gene31881:CDS
TGACATTATAACTTCAAAAG+AGG	0.495408	1.2:-20456509	None:intergenic
TGTGGCTGTAAGTTCGGTAA+AGG	0.504977	1.2:+20457816	MS.gene31881:CDS
GCTGTAAGTTCGGTAAAGGT+TGG	0.518813	1.2:+20457820	MS.gene31881:CDS
AAGAGATATCCATATTTGAA+AGG	0.520085	1.2:-20455780	None:intergenic
AATGGCAAGAGAAAATTCTC+AGG	0.523324	1.2:+20456086	MS.gene31881:CDS
GACATTATAACTTCAAAAGA+GGG	0.525934	1.2:-20456508	None:intergenic
AAGACATTGGAGGAACATCT+AGG	0.526190	1.2:+20457053	MS.gene31881:CDS
GAAGGAGCACAAGACATTCA+AGG	0.537945	1.2:+20457475	MS.gene31881:CDS
AATATCAAATCAGTTGATGA+AGG	0.540855	1.2:+20455879	MS.gene31881:CDS
GATGAGGAAGCCATTGAAGA+AGG	0.544836	1.2:+20455990	MS.gene31881:CDS
CCAAAGCCAAAGAAATCACT+AGG	0.556666	1.2:+20456885	MS.gene31881:CDS
GTTGTAAAGAAGCAAGACAT+TGG	0.558494	1.2:+20457040	MS.gene31881:CDS
CAATAAGGGTTGGTAATGAA+AGG	0.558627	1.2:+20456688	MS.gene31881:CDS
TACAGAAGGTCGTGATGTGA+AGG	0.563378	1.2:+20457457	MS.gene31881:intron
AAGTGATGAATCAAGTGATG+AGG	0.567308	1.2:+20455974	MS.gene31881:CDS
AGGTAGTAACAAAGTGGCCA+TGG	0.577811	1.2:+20456438	MS.gene31881:intron
AATATTGTATGGGTGGTGGA+TGG	0.587908	1.2:+20456751	MS.gene31881:CDS
GTAAATTTGAGATGATTCAA+CGG	0.588165	1.2:+20456817	MS.gene31881:CDS
GGTGCTGAAGACACAGAAGA+AGG	0.588176	1.2:+20455900	MS.gene31881:CDS
ATATTCCTTAAGTTTCCTAA+CGG	0.590322	1.2:+20455681	MS.gene31881:CDS
GAGTAATGAGAGTTCAGATG+AGG	0.591415	1.2:+20456031	MS.gene31881:CDS
GAGGGTTCCAAAGAAATATG+TGG	0.594786	1.2:+20455629	MS.gene31881:intron
GTATCTGCAGTGTGTACCAA+AGG	0.598126	1.2:+20457710	MS.gene31881:intron
GTAAAGAAGCAAGACATTGG+AGG	0.602206	1.2:+20457043	MS.gene31881:CDS
ACTTACAAAGAAATAGCCAT+TGG	0.605595	1.2:-20456542	None:intergenic
ATGTCACAATCTTACGCCAA+TGG	0.605717	1.2:+20456526	MS.gene31881:CDS
GGTTGGTAATGAAAGGAGTG+TGG	0.605745	1.2:+20456695	MS.gene31881:CDS
GGAACCACAACAATAAGGGT+TGG	0.608476	1.2:+20456678	MS.gene31881:CDS
TATGTGGAGAAATATTGGAA+AGG	0.617787	1.2:+20455645	MS.gene31881:CDS
ATTCATGAAAGAATGCAAAG+TGG	0.625279	1.2:+20457848	MS.gene31881:CDS
TTTCGTGAAGAACAAAACCC+CGG	0.628138	1.2:+20457499	MS.gene31881:CDS
ATATCTTGGAGTTGAAAATG+GGG	0.639227	1.2:+20457751	MS.gene31881:CDS
AAATACCAAAGCAAACTCAA+AGG	0.654830	1.2:+20456057	MS.gene31881:CDS
GGAGTGTGGAAGTGAGTGTG+AGG	0.659449	1.2:+20456709	MS.gene31881:CDS
CTTGGCAGGTAGTAACAAAG+TGG	0.671173	1.2:+20456432	MS.gene31881:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AATATTTGTAACTTTTAATT+TGG	+	chr1.2:20457150-20457169	MS.gene31881:intron	10.0%
!!!	CAAATATATCTAAATTTTTT+GGG	+	chr1.2:20457386-20457405	MS.gene31881:intron	10.0%
!!!	TCAAATATATCTAAATTTTT+TGG	+	chr1.2:20457385-20457404	MS.gene31881:intron	10.0%
!!	AAACTTATGAATGATTTATA+AGG	+	chr1.2:20457178-20457197	MS.gene31881:intron	15.0%
!!	ATTTGAATAGATTTATAGTT+AGG	-	chr1.2:20457371-20457390	None:intergenic	15.0%
!!	TAAAAAATATTTCAATTCAC+AGG	-	chr1.2:20457254-20457273	None:intergenic	15.0%
!!	TTTATGTAATTATATCTTAC+CGG	-	chr1.2:20457521-20457540	None:intergenic	15.0%
!!!	AAATGTGATTTTTTTTTTGT+AGG	+	chr1.2:20456294-20456313	MS.gene31881:intron	15.0%
!!!	ATAGTTTATTTCTAAAGTAT+TGG	-	chr1.2:20455856-20455875	None:intergenic	15.0%
!!!	ATATTTGGTTTCAAAAAAAT+TGG	+	chr1.2:20455742-20455761	MS.gene31881:CDS	15.0%
!!!	TATTTGGTTTCAAAAAAATT+GGG	+	chr1.2:20455743-20455762	MS.gene31881:CDS	15.0%
!!!	TATTTTAAGGTTAAGATATT+TGG	+	chr1.2:20455828-20455847	MS.gene31881:CDS	15.0%
!!!	TGTTGAACAAAAAATATTTT+GGG	+	chr1.2:20455704-20455723	MS.gene31881:CDS	15.0%
!!!	TTAGATTTTATTATTGTAGA+GGG	+	chr1.2:20457121-20457140	MS.gene31881:intron	15.0%
!!!	TTATTTTAAGAGTTATTGAA+TGG	+	chr1.2:20456188-20456207	MS.gene31881:intron	15.0%
!!!	TTCTTTCTTTCTTTTTTATT+TGG	+	chr1.2:20456910-20456929	MS.gene31881:intron	15.0%
!!!	TTTAGATTTTATTATTGTAG+AGG	+	chr1.2:20457120-20457139	MS.gene31881:intron	15.0%
!!	ATAGTAACATTGAATGAAAT+TGG	-	chr1.2:20456846-20456865	None:intergenic	20.0%
!!	TACAAACAAAAATATTAGTG+AGG	-	chr1.2:20457693-20457712	None:intergenic	20.0%
!!	TATGAATCATGAAAATATCT+TGG	+	chr1.2:20457737-20457756	MS.gene31881:CDS	20.0%
!!	TTATGTAATTATATCTTACC+GGG	-	chr1.2:20457520-20457539	None:intergenic	20.0%
!!!	AATATATTCCAGATTTTCAT+AGG	+	chr1.2:20455464-20455483	MS.gene31881:CDS	20.0%
!!!	GTGTTGAACAAAAAATATTT+TGG	+	chr1.2:20455703-20455722	MS.gene31881:CDS	20.0%
!	AAATAGTTAATGCCTAAACT+TGG	+	chr1.2:20456414-20456433	MS.gene31881:intron	25.0%
!	AAATATCTTGGAGTTGAAAA+TGG	+	chr1.2:20457749-20457768	MS.gene31881:CDS	25.0%
!	AAATATTATGAGAGTCTTTG+TGG	+	chr1.2:20457798-20457817	MS.gene31881:CDS	25.0%
!	AAGAGATATCCATATTTGAA+AGG	-	chr1.2:20455783-20455802	None:intergenic	25.0%
!	AATATCTTGGAGTTGAAAAT+GGG	+	chr1.2:20457750-20457769	MS.gene31881:CDS	25.0%
!	AATTGAACGAAAGTTAGTTA+TGG	-	chr1.2:20457575-20457594	None:intergenic	25.0%
!	ACCCAGAAAAAATATTGTAT+GGG	+	chr1.2:20456741-20456760	MS.gene31881:CDS	25.0%
!	AGAAATATGTGGAGAAATAT+TGG	+	chr1.2:20455640-20455659	MS.gene31881:CDS	25.0%
!	AGGTTAAAAGTTAATAGAGT+GGG	-	chr1.2:20457633-20457652	None:intergenic	25.0%
!	ATATTCCTTAAGTTTCCTAA+CGG	+	chr1.2:20455681-20455700	MS.gene31881:CDS	25.0%
!	ATGACAAGGTTATAAAAAAG+GGG	+	chr1.2:20457000-20457019	MS.gene31881:intron	25.0%
!	ATTGAACGAAAGTTAGTTAT+GGG	-	chr1.2:20457574-20457593	None:intergenic	25.0%
!	CATGACAAGGTTATAAAAAA+GGG	+	chr1.2:20456999-20457018	MS.gene31881:intron	25.0%
!	CTCTTAACTTTCAAATTCAT+TGG	+	chr1.2:20455798-20455817	MS.gene31881:CDS	25.0%
!	GACATTATAACTTCAAAAGA+GGG	-	chr1.2:20456511-20456530	None:intergenic	25.0%
!	TAAAAGAAGAAACTGAAAAC+TGG	-	chr1.2:20457340-20457359	None:intergenic	25.0%
!	TACCCAGAAAAAATATTGTA+TGG	+	chr1.2:20456740-20456759	MS.gene31881:CDS	25.0%
!	TAGGAAACTTAAGGAATATA+GGG	-	chr1.2:20455680-20455699	None:intergenic	25.0%
!	TATGTAATTATATCTTACCG+GGG	-	chr1.2:20457519-20457538	None:intergenic	25.0%
!	TATTTCTCCACATATTTCTT+TGG	-	chr1.2:20455639-20455658	None:intergenic	25.0%
!	TGACATTATAACTTCAAAAG+AGG	-	chr1.2:20456512-20456531	None:intergenic	25.0%
!	TTAACTTTCAAATTCATTGG+TGG	+	chr1.2:20455801-20455820	MS.gene31881:CDS	25.0%
!	TTAGGAAACTTAAGGAATAT+AGG	-	chr1.2:20455681-20455700	None:intergenic	25.0%
!!	CTTTTAACCTCTAATGTATA+AGG	+	chr1.2:20457643-20457662	MS.gene31881:intron	25.0%
!!	GAACACTTGAAAGATTTTAA+TGG	+	chr1.2:20456657-20456676	MS.gene31881:CDS	25.0%
!!	GTAAATTTGAGATGATTCAA+CGG	+	chr1.2:20456817-20456836	MS.gene31881:CDS	25.0%
!!!	AATATCAAATCAGTTGATGA+AGG	+	chr1.2:20455879-20455898	MS.gene31881:CDS	25.0%
!!!	ACCCATACAATATTTTTTCT+GGG	-	chr1.2:20456745-20456764	None:intergenic	25.0%
!!!	TGAACAAAAAATATTTTGGG+TGG	+	chr1.2:20455707-20455726	MS.gene31881:CDS	25.0%
!!!	TTCATCAACTGATTTGATAT+TGG	-	chr1.2:20455880-20455899	None:intergenic	25.0%
!!!	TTTTTTTGTTATCCATGACA+AGG	+	chr1.2:20456986-20457005	MS.gene31881:intron	25.0%
	AAAAAATATTGTATGGGTGG+TGG	+	chr1.2:20456747-20456766	MS.gene31881:CDS	30.0%
	AAATACCAAAGCAAACTCAA+AGG	+	chr1.2:20456057-20456076	MS.gene31881:CDS	30.0%
	AAGATGATCCTATGAAAATC+TGG	-	chr1.2:20455475-20455494	None:intergenic	30.0%
	ACTTACAAAGAAATAGCCAT+TGG	-	chr1.2:20456545-20456564	None:intergenic	30.0%
	AGAAAACCTAGTGATTTCTT+TGG	-	chr1.2:20456894-20456913	None:intergenic	30.0%
	ATATCTTGGAGTTGAAAATG+GGG	+	chr1.2:20457751-20457770	MS.gene31881:CDS	30.0%
	ATTCATGAAAGAATGCAAAG+TGG	+	chr1.2:20457848-20457867	MS.gene31881:CDS	30.0%
	CAGAAAAAATATTGTATGGG+TGG	+	chr1.2:20456744-20456763	MS.gene31881:CDS	30.0%
	CCATGACAAGGTTATAAAAA+AGG	+	chr1.2:20456998-20457017	MS.gene31881:intron	30.0%
	GAGGTTAAAAGTTAATAGAG+TGG	-	chr1.2:20457634-20457653	None:intergenic	30.0%
	GTGTTTGATGTTTCAATTGT+AGG	+	chr1.2:20457918-20457937	MS.gene31881:CDS	30.0%
	TAAACCATTACTTGAAACAG+TGG	+	chr1.2:20456613-20456632	MS.gene31881:intron	30.0%
	TAATGGAACCACAACAATAA+GGG	+	chr1.2:20456674-20456693	MS.gene31881:CDS	30.0%
	TATGTGGAGAAATATTGGAA+AGG	+	chr1.2:20455645-20455664	MS.gene31881:CDS	30.0%
	TCATGATTCATAAACTCCTT+TGG	-	chr1.2:20457729-20457748	None:intergenic	30.0%
	TGTTCTCTTGAAAACTCATT+TGG	-	chr1.2:20456642-20456661	None:intergenic	30.0%
	TTAACCTCTAATGTATAAGG+TGG	+	chr1.2:20457646-20457665	MS.gene31881:intron	30.0%
	TTAATGGAACCACAACAATA+AGG	+	chr1.2:20456673-20456692	MS.gene31881:CDS	30.0%
	TTGAATTTCTTTGTTGCAGA+GGG	+	chr1.2:20455611-20455630	MS.gene31881:intron	30.0%
	TTTGAATTTCTTTGTTGCAG+AGG	+	chr1.2:20455610-20455629	MS.gene31881:intron	30.0%
	TTTGCAAAGCCTTTCAAATA+TGG	+	chr1.2:20455771-20455790	MS.gene31881:CDS	30.0%
!	AGAGTTATTGAATGGTTTGT+TGG	+	chr1.2:20456196-20456215	MS.gene31881:intron	30.0%
!	GTTGGAATTTTATGTCTGAA+AGG	+	chr1.2:20456214-20456233	MS.gene31881:intron	30.0%
!!	CATTGGTGGATCATATTTTA+AGG	+	chr1.2:20455815-20455834	MS.gene31881:CDS	30.0%
!!!	ATTCTCAGGTTGATCTTTTT+TGG	+	chr1.2:20456100-20456119	MS.gene31881:intron	30.0%
!!!	ATTTTTTGTTCAACACCGTT+AGG	-	chr1.2:20455699-20455718	None:intergenic	30.0%
!!!	CACCCATACAATATTTTTTC+TGG	-	chr1.2:20456746-20456765	None:intergenic	30.0%
!!!	CCTTTTTTATAACCTTGTCA+TGG	-	chr1.2:20457001-20457020	None:intergenic	30.0%
!!!	GATCTTTTTTGGGTAGATTT+AGG	+	chr1.2:20456111-20456130	MS.gene31881:intron	30.0%
!!!	TTCTCAGGTTGATCTTTTTT+GGG	+	chr1.2:20456101-20456120	MS.gene31881:intron	30.0%
	AAAGAATGCAAAGTGGAGAT+TGG	+	chr1.2:20457855-20457874	MS.gene31881:CDS	35.0%
	AAGTGATGAATCAAGTGATG+AGG	+	chr1.2:20455974-20455993	MS.gene31881:CDS	35.0%
	AATGGCAAGAGAAAATTCTC+AGG	+	chr1.2:20456086-20456105	MS.gene31881:CDS	35.0%
	ACTTTCTTCACCTTCTTCAA+TGG	-	chr1.2:20456003-20456022	None:intergenic	35.0%
	ATTACCAACCCTTATTGTTG+TGG	-	chr1.2:20456685-20456704	None:intergenic	35.0%
	CATTAACAGCTTCAGATCTT+AGG	-	chr1.2:20456483-20456502	None:intergenic	35.0%
	GTTGTAAAGAAGCAAGACAT+TGG	+	chr1.2:20457040-20457059	MS.gene31881:CDS	35.0%
	TATAAAAAAGGGGTCTCTTG+TGG	+	chr1.2:20457010-20457029	MS.gene31881:CDS	35.0%
	TGAAAATGGGGAGAAAATCA+TGG	+	chr1.2:20457763-20457782	MS.gene31881:CDS	35.0%
	TGGAGAGTAATGGTGATATT+TGG	+	chr1.2:20455727-20455746	MS.gene31881:CDS	35.0%
	TGTGTTTATGCATGTACAGA+AGG	+	chr1.2:20457443-20457462	MS.gene31881:intron	35.0%
!	AGAGCAATACCCTTTACTTT+TGG	-	chr1.2:20457085-20457104	None:intergenic	35.0%
!	AGTGGGATTAACTTGACTAA+CGG	-	chr1.2:20457616-20457635	None:intergenic	35.0%
!	GTATCCACTGTTTCAAGTAA+TGG	-	chr1.2:20456620-20456639	None:intergenic	35.0%
!!	ATATTTTGGGTGGAGAGTAA+TGG	+	chr1.2:20455717-20455736	MS.gene31881:CDS	35.0%
!!	CAATAAGGGTTGGTAATGAA+AGG	+	chr1.2:20456688-20456707	MS.gene31881:CDS	35.0%
!!	CAATACCCTTTACTTTTGGA+TGG	-	chr1.2:20457081-20457100	None:intergenic	35.0%
!!	GAATTTTCTCTTGCCATTTC+TGG	-	chr1.2:20456084-20456103	None:intergenic	35.0%
!!	TTTTCTAGCCTTCTTTACCA+TGG	-	chr1.2:20456458-20456477	None:intergenic	35.0%
	AAGACATTGGAGGAACATCT+AGG	+	chr1.2:20457053-20457072	MS.gene31881:CDS	40.0%
	AGGAGCCATCCAAAAGTAAA+GGG	+	chr1.2:20457073-20457092	MS.gene31881:CDS	40.0%
	AGTCTTTGTGGCTGTAAGTT+CGG	+	chr1.2:20457810-20457829	MS.gene31881:CDS	40.0%
	AGTTAATGCCTAAACTTGGC+AGG	+	chr1.2:20456418-20456437	MS.gene31881:intron	40.0%
	ATGTCACAATCTTACGCCAA+TGG	+	chr1.2:20456526-20456545	MS.gene31881:CDS	40.0%
	CAAACTCAAAGGACCAGAAA+TGG	+	chr1.2:20456068-20456087	MS.gene31881:CDS	40.0%
	CAACACCGTTAGGAAACTTA+AGG	-	chr1.2:20455689-20455708	None:intergenic	40.0%
	CCAAAGCCAAAGAAATCACT+AGG	+	chr1.2:20456885-20456904	MS.gene31881:CDS	40.0%
	GAGGGTTCCAAAGAAATATG+TGG	+	chr1.2:20455629-20455648	MS.gene31881:intron	40.0%
	GAGTAATGAGAGTTCAGATG+AGG	+	chr1.2:20456031-20456050	MS.gene31881:CDS	40.0%
	GTAAAGAAGCAAGACATTGG+AGG	+	chr1.2:20457043-20457062	MS.gene31881:CDS	40.0%
	GTGTCCACCTTATACATTAG+AGG	-	chr1.2:20457653-20457672	None:intergenic	40.0%
	TAGGAGCCATCCAAAAGTAA+AGG	+	chr1.2:20457072-20457091	MS.gene31881:CDS	40.0%
	TGTTACTACCTGCCAAGTTT+AGG	-	chr1.2:20456429-20456448	None:intergenic	40.0%
	TTTCGTGAAGAACAAAACCC+CGG	+	chr1.2:20457499-20457518	MS.gene31881:CDS	40.0%
!	CCTAGTGATTTCTTTGGCTT+TGG	-	chr1.2:20456888-20456907	None:intergenic	40.0%
!!	AATATTGTATGGGTGGTGGA+TGG	+	chr1.2:20456751-20456770	MS.gene31881:CDS	40.0%
!!	GTGGTGGATGGAAAATATTC+AGG	+	chr1.2:20456763-20456782	MS.gene31881:CDS	40.0%
!!!	CTTTGGCTTTGGTTCGTTTT+TGG	-	chr1.2:20456877-20456896	None:intergenic	40.0%
	AGGTAGTAACAAAGTGGCCA+TGG	+	chr1.2:20456438-20456457	MS.gene31881:intron	45.0%
	CAAAGTGGCCATGGTAAAGA+AGG	+	chr1.2:20456447-20456466	MS.gene31881:CDS	45.0%
	CTTGGCAGGTAGTAACAAAG+TGG	+	chr1.2:20456432-20456451	MS.gene31881:intron	45.0%
	GATGAGGAAGCCATTGAAGA+AGG	+	chr1.2:20455990-20456009	MS.gene31881:CDS	45.0%
	GCTGTAAGTTCGGTAAAGGT+TGG	+	chr1.2:20457820-20457839	MS.gene31881:CDS	45.0%
	GGAACCACAACAATAAGGGT+TGG	+	chr1.2:20456678-20456697	MS.gene31881:CDS	45.0%
	GTATCTGCAGTGTGTACCAA+AGG	+	chr1.2:20457710-20457729	MS.gene31881:intron	45.0%
	TACAGAAGGTCGTGATGTGA+AGG	+	chr1.2:20457457-20457476	MS.gene31881:intron	45.0%
	TGTGGCTGTAAGTTCGGTAA+AGG	+	chr1.2:20457816-20457835	MS.gene31881:CDS	45.0%
!	CTGGTCCTTTGAGTTTGCTT+TGG	-	chr1.2:20456065-20456084	None:intergenic	45.0%
!	GAAGGAGCACAAGACATTCA+AGG	+	chr1.2:20457475-20457494	MS.gene31881:CDS	45.0%
!!	GGTTGGTAATGAAAGGAGTG+TGG	+	chr1.2:20456695-20456714	MS.gene31881:CDS	45.0%
!!	AAAAATAATAAATACTTAAT+TGG	+	chr1.2:20456345-20456364	MS.gene31881:intron	5.0%
!	GGTGCTGAAGACACAGAAGA+AGG	+	chr1.2:20455900-20455919	MS.gene31881:CDS	50.0%
	GGAGTGTGGAAGTGAGTGTG+AGG	+	chr1.2:20456709-20456728	MS.gene31881:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	20455454	20457968	20455454	ID=MS.gene31881
chr1.2	mRNA	20455454	20457968	20455454	ID=MS.gene31881.t1;Parent=MS.gene31881
chr1.2	exon	20455454	20455510	20455454	ID=MS.gene31881.t1.exon1;Parent=MS.gene31881.t1
chr1.2	CDS	20455454	20455510	20455454	ID=cds.MS.gene31881.t1;Parent=MS.gene31881.t1
chr1.2	exon	20455630	20456107	20455630	ID=MS.gene31881.t1.exon2;Parent=MS.gene31881.t1
chr1.2	CDS	20455630	20456107	20455630	ID=cds.MS.gene31881.t1;Parent=MS.gene31881.t1
chr1.2	exon	20456440	20456558	20456440	ID=MS.gene31881.t1.exon3;Parent=MS.gene31881.t1
chr1.2	CDS	20456440	20456558	20456440	ID=cds.MS.gene31881.t1;Parent=MS.gene31881.t1
chr1.2	exon	20456633	20456906	20456633	ID=MS.gene31881.t1.exon4;Parent=MS.gene31881.t1
chr1.2	CDS	20456633	20456906	20456633	ID=cds.MS.gene31881.t1;Parent=MS.gene31881.t1
chr1.2	exon	20457008	20457094	20457008	ID=MS.gene31881.t1.exon5;Parent=MS.gene31881.t1
chr1.2	CDS	20457008	20457094	20457008	ID=cds.MS.gene31881.t1;Parent=MS.gene31881.t1
chr1.2	exon	20457462	20457520	20457462	ID=MS.gene31881.t1.exon6;Parent=MS.gene31881.t1
chr1.2	CDS	20457462	20457520	20457462	ID=cds.MS.gene31881.t1;Parent=MS.gene31881.t1
chr1.2	exon	20457720	20457968	20457720	ID=MS.gene31881.t1.exon7;Parent=MS.gene31881.t1
chr1.2	CDS	20457720	20457968	20457720	ID=cds.MS.gene31881.t1;Parent=MS.gene31881.t1

Gene Sequence

>MS.gene31881

ATGTCATTTCAATATATTCCAGATTTTCATAGGATCATCTTGCAAGATAAGAAACTTGTAAGCATATTAGAAAGAGTTATCTTGCATATTTACATTCTGTTTCATTTATAATATATTATTTATGTATCATTTTTTAAAAAATGTTTATGTATGATTTTTGAATTTCTTTGTTGCAGAGGGTTCCAAAGAAATATGTGGAGAAATATTGGAAAGGAATATCAAACCCTATATTCCTTAAGTTTCCTAACGGTGTTGAACAAAAAATATTTTGGGTGGAGAGTAATGGTGATATTTGGTTTCAAAAAAATTGGGAAAATTTTGCAAAGCCTTTCAAATATGGATATCTCTTAACTTTCAAATTCATTGGTGGATCATATTTTAAGGTTAAGATATTTGGTGCCAATACTTTAGAAATAAACTATTCCAATATCAAATCAGTTGATGAAGGTGCTGAAGACACAGAAGAAGGTAAAGAAAGAGATGAATCAAGTGATGATGAAGTCACAAAAGAAGCTCAAGAAAGTGATGAATCAAGTGATGAGGAAGCCATTGAAGAAGGTGAAGAAAGTGATGAAGAGAGTAATGAGAGTTCAGATGAGGTTGAAATACCAAAGCAAACTCAAAGGACCAGAAATGGCAAGAGAAAATTCTCAGGTTGATCTTTTTTGGGTAGATTTAGGCTTGTCTGTTACTCTATTTCTTTAAAAATAAATCACTTGTTTTTATAGAAATAATTATTTTAAGAGTTATTGAATGGTTTGTTGGAATTTTATGTCTGAAAGGTTGAAAATCTTTGAAAGAAAAATGTCTTCAAGTGCTGAGTAGATACTTTTTATATAAAAATGTGATTTTTTTTTTGTAGGAAAAATATGTGATTTTTATTATGATAAAAAAAATAATAAATACTTAATTGGTTTTCTTAAAATCTTCTAAAAACAATATCTAAATCAAATGTATAATAAATAGTTAATGCCTAAACTTGGCAGGTAGTAACAAAGTGGCCATGGTAAAGAAGGCTAGAAAATGCCTAAGATCTGAAGCTGTTAATGAGAATCCCTCTTTTGAAGTTATAATGTCACAATCTTACGCCAATGGCTATTTCTTTGTAAGTTTGCTATACAAAGTATCTATTAATTTTAGCTTTAATTATTATATCTAATAAACCATTACTTGAAACAGTGGATACCAAATGAGTTTTCAAGAGAACACTTGAAAGATTTTAATGGAACCACAACAATAAGGGTTGGTAATGAAAGGAGTGTGGAAGTGAGTGTGAGGTATTATGATACCCAGAAAAAATATTGTATGGGTGGTGGATGGAAAATATTCAGGCAAAAATATAATTTGCAAGTTGATGATGTTTGTAAATTTGAGATGATTCAACGGAGACCAATTTCATTCAATGTTACTATTACTCGTGCCAAAAACGAACCAAAGCCAAAGAAATCACTAGGTTTTCTTTCTTTCTTTTTTATTTGGTTTTCTGTATGTTATAATTTTTTTTATTTGATATTTGATTAACATCTAATATTTTTTTTTGTTATCCATGACAAGGTTATAAAAAAGGGGTCTCTTGTGGTAAGAGTGTTGTAAAGAAGCAAGACATTGGAGGAACATCTAGGAGCCATCCAAAAGTAAAGGGTATTGCTCTAACTTTTTTAATGTTTTTAGATTTTATTATTGTAGAGGGTTCTGAAATATTTGTAACTTTTAATTTGGTCTTCAAACTTATGAATGATTTATAAGGTTCTTGAACTAAGTTTTTAATTGTATATCGTTGATCTTTAATTTTAAATACCTGTGAATTGAAATATTTTTTATGTTCAAAGAACTTTTAAAAAGTTCTTTGAACTTTTTGATAGTTAGTGATTGACGTAACTTATCCAGTTTTCAGTTTCTTCTTTTACTTTAGAACCTAACTATAAATCTATTCAAATATATCTAAATTTTTTGGGTGTTAAAAAATTAGATTAGATTAGATACTATCATTGTGTTTATGCATGTACAGAAGGTCGTGATGTGAAGGAGCACAAGACATTCAAGGTTTTCGTGAAGAACAAAACCCCGGTAAGATATAATTACATAAAAATATATGTCAAATCACATTTTCATATTTTCCCATAACTAACTTTCGTTCAATTTAGTCTCATAAGTTTTCTCCGTTAGTCAAGTTAATCCCACTCTATTAACTTTTAACCTCTAATGTATAAGGTGGACACACAATGTATGTGAAAGTCCTCACTAATATTTTTGTTTGTATCTGCAGTGTGTACCAAAGGAGTTTATGAATCATGAAAATATCTTGGAGTTGAAAATGGGGAGAAAATCATGGTTTGTAAAAGTCAAATATTATGAGAGTCTTTGTGGCTGTAAGTTCGGTAAAGGTTGGAGAAAATTCATGAAAGAATGCAAAGTGGAGATTGGAGATACTTGTCTCTTCAAGTTAATTGATGAAAGAAATTTTGTGTTTGATGTTTCAATTGTAGGAAAGAATCCATTAGCTGTGCTTCTTTAA

Protein sequence

>MS.gene31881.t1

MSFQYIPDFHRIILQDKKLRVPKKYVEKYWKGISNPIFLKFPNGVEQKIFWVESNGDIWFQKNWENFAKPFKYGYLLTFKFIGGSYFKVKIFGANTLEINYSNIKSVDEGAEDTEEGKERDESSDDEVTKEAQESDESSDEEAIEEGEESDEESNESSDEVEIPKQTQRTRNGKRKFSGSNKVAMVKKARKCLRSEAVNENPSFEVIMSQSYANGYFFWIPNEFSREHLKDFNGTTTIRVGNERSVEVSVRYYDTQKKYCMGGGWKIFRQKYNLQVDDVCKFEMIQRRPISFNVTITRAKNEPKPKKSLGYKKGVSCGKSVVKKQDIGGTSRSHPKVKEGRDVKEHKTFKVFVKNKTPCVPKEFMNHENILELKMGRKSWFVKVKYYESLCGCKFGKGWRKFMKECKVEIGDTCLFKLIDERNFVFDVSIVGKNPLAVLL