AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene067203

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067203.t1 MTR_6g061070 69.328 238 35 1 80 279 229 466 1.21e-109 325
MS.gene067203.t1 MTR_6g061070 76.404 89 21 0 3 91 1 89 1.58e-43 154
MS.gene067203.t1 MTR_1g035480 80.682 88 17 0 4 91 1 88 2.46e-47 156
MS.gene067203.t1 MTR_1g035520 77.551 98 21 1 183 279 282 379 1.73e-46 160
MS.gene067203.t1 MTR_1g035520 77.193 57 13 0 35 91 87 143 9.46e-25 102
MS.gene067203.t1 MTR_1g033740 74.713 87 22 0 5 91 7 93 1.42e-42 144
MS.gene067203.t1 MTR_1g035500 71.264 87 25 0 5 91 10 96 1.85e-42 144
MS.gene067203.t1 MTR_1g035540 79.452 73 15 0 138 210 31 103 3.55e-34 121
MS.gene067203.t1 MTR_1g035570 39.175 194 107 5 88 278 204 389 1.36e-31 121
MS.gene067203.t1 MTR_1g035570 24.444 270 182 8 29 278 14 281 2.93e-12 66.6
MS.gene067203.t1 MTR_1g035490 35.071 211 107 5 93 278 118 323 3.56e-28 110
MS.gene067203.t1 MTR_1g035470 78.947 57 12 0 35 91 1 57 6.47e-26 100
MS.gene067203.t1 MTR_1g035620 32.143 224 124 5 81 279 185 405 1.77e-22 96.3
MS.gene067203.t1 MTR_1g035620 25.899 278 174 9 16 274 5 269 4.08e-16 78.2
MS.gene067203.t1 MTR_1g035510 68.421 57 18 0 35 91 1 57 5.38e-22 91.7
MS.gene067203.t1 MTR_1g035640 28.253 269 166 10 29 278 14 274 5.57e-19 86.7
MS.gene067203.t1 MTR_1g035640 46.392 97 50 2 88 184 197 291 6.28e-18 83.6
MS.gene067203.t1 MTR_1g050845 43.243 74 41 1 16 88 5 78 1.34e-15 77.0
MS.gene067203.t1 MTR_1g050845 30.000 180 91 4 88 238 180 353 3.56e-14 72.8
MS.gene067203.t1 MTR_1g035650 40.260 77 45 1 16 91 5 81 2.22e-14 70.9
MS.gene067203.t1 MTR_4g119990 42.857 77 42 2 15 89 10 86 2.09e-13 70.1
MS.gene067203.t1 MTR_7g050560 26.690 281 177 13 14 273 7 279 1.03e-12 67.4
MS.gene067203.t1 MTR_6g043890 24.658 292 172 11 14 268 9 289 9.07e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 51 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTCACATGACAAATTTA+AGG 0.173779 1.2:-20597250 MS.gene067203:CDS
TTGCATTCTCTCACGAATTC+TGG 0.238243 1.2:+20596974 None:intergenic
TTAAACAGAGGATACCTATT+TGG 0.252919 1.2:-20598086 MS.gene067203:intron
GGGAATGGTTTCTTTGTTGT+TGG 0.314235 1.2:+20597835 None:intergenic
TTTGGAAGTCTAAGCGATAT+TGG 0.316363 1.2:+20598252 None:intergenic
GGTCTGAGTTCAAAATGAAT+TGG 0.350012 1.2:-20598227 MS.gene067203:CDS
TACAACGCGGTGACGATGTT+TGG 0.370214 1.2:-20598203 MS.gene067203:CDS
GAAATACCTTGAAAATGCTC+TGG 0.394859 1.2:+20597814 None:intergenic
ACGATGTTTGGCTTCAGAAT+TGG 0.404471 1.2:-20598191 MS.gene067203:CDS
AGAGAATGCAAAGTAAAGAT+TGG 0.430681 1.2:-20596962 MS.gene067203:CDS
TGTTCAAAATCATGTGTTCA+AGG 0.447991 1.2:-20596912 MS.gene067203:intron
TTAGAAGTGTTGGTGAGGAC+AGG 0.455257 1.2:-20598017 MS.gene067203:CDS
GTCTGAGTTCAAAATGAATT+GGG 0.455385 1.2:-20598226 MS.gene067203:CDS
ATAGTAATTGTGAATGAAAG+TGG 0.456460 1.2:+20597862 None:intergenic
AAGGAACATGACTTGAAAGT+TGG 0.470859 1.2:-20597919 MS.gene067203:CDS
TGTCTCTCTACGAATTTCCT+TGG 0.471061 1.2:+20598294 None:intergenic
ATTCAGTGGAGTTGAAAGTA+GGG 0.477979 1.2:-20597066 MS.gene067203:CDS
AGGAACATGGTTTGTAGAGG+TGG 0.484845 1.2:-20597041 MS.gene067203:CDS
CCTTGAAAATGCTCTGGGAA+TGG 0.485126 1.2:+20597820 None:intergenic
GGAACATGGTTTGTAGAGGT+GGG 0.494808 1.2:-20597040 MS.gene067203:CDS
TGAAAGTAGGGGAAGGAACA+TGG 0.498346 1.2:-20597054 MS.gene067203:CDS
GATTATGAGTGGTTCACTAA+AGG 0.500063 1.2:-20597001 MS.gene067203:CDS
GATTCAGTGGAGTTGAAAGT+AGG 0.514511 1.2:-20597067 MS.gene067203:CDS
ATATCGCTTAGACTTCCAAA+TGG 0.516695 1.2:-20598249 MS.gene067203:CDS
TTCAGTGGAGTTGAAAGTAG+GGG 0.529294 1.2:-20597065 MS.gene067203:CDS
GGAAATTCGTAGAGAGACAT+TGG 0.530097 1.2:-20598290 MS.gene067203:CDS
TTATGCCTCTTCAACAGACT+TGG 0.532458 1.2:+20597103 None:intergenic
TACTGCCAAGTCTGTTGAAG+AGG 0.535316 1.2:-20597108 MS.gene067203:CDS
TATATTTAGCGGAGATTCAG+TGG 0.538001 1.2:-20597080 MS.gene067203:CDS
AAGAGGCATAATATATTTAG+CGG 0.538890 1.2:-20597091 MS.gene067203:CDS
AACCACTCATAATCGAGGTA+TGG 0.547057 1.2:+20597010 None:intergenic
AAATACCTTGAAAATGCTCT+GGG 0.549451 1.2:+20597815 None:intergenic
TGTTCTTGCAGATGATTCCA+AGG 0.559130 1.2:-20598311 MS.gene067203:intron
TTTGGCTTCAGAATTGGAAG+AGG 0.559399 1.2:-20598185 MS.gene067203:CDS
TATCGCTTAGACTTCCAAAT+GGG 0.562651 1.2:-20598248 MS.gene067203:CDS
ATGAGTGGTTCACTAAAGGT+TGG 0.565277 1.2:-20596997 MS.gene067203:CDS
TAGAAGTGTTGGTGAGGACA+GGG 0.569481 1.2:-20598016 MS.gene067203:CDS
AAGGCAACGATTAGAAGTGT+TGG 0.578046 1.2:-20598027 MS.gene067203:CDS
TTTGCGCGCTCTCTCAGATG+TGG 0.586381 1.2:-20598162 MS.gene067203:CDS
GGACGTGGCAGTGAAGCTCA+TGG 0.611140 1.2:-20599333 MS.gene067203:CDS
GGAAGGAACATGGTTTGTAG+AGG 0.613086 1.2:-20597044 MS.gene067203:CDS
TCGAGTGTTCACAATGGACG+TGG 0.628713 1.2:-20599348 MS.gene067203:CDS
ATCCATACCTCGATTATGAG+TGG 0.631596 1.2:-20597012 MS.gene067203:CDS
GAATGAGTTATTGCGAAGGA+AGG 0.637944 1.2:-20598046 MS.gene067203:CDS
AACGATTAGAAGTGTTGGTG+AGG 0.638209 1.2:-20598022 MS.gene067203:CDS
GTGGAGTTGAAAGTAGGGGA+AGG 0.644645 1.2:-20597061 MS.gene067203:CDS
GTGTTGGTGAGGACAGGGCA+TGG 0.648324 1.2:-20598011 MS.gene067203:CDS
ACATGAATGAGTTATTGCGA+AGG 0.663707 1.2:-20598050 MS.gene067203:CDS
TAGTGAACCACTCATAATCG+AGG 0.684311 1.2:+20597005 None:intergenic
ATGATGTCGAGTGTTCACAA+TGG 0.758516 1.2:-20599354 MS.gene067203:CDS
AAAATGAATTGGGTACAACG+CGG 0.771281 1.2:-20598216 MS.gene067203:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAATGAATAAGAAAAA+AGG + chr1.2:20596156-20596175 None:intergenic 15.0%
!! AACAAAAATAGATTGAAATT+TGG + chr1.2:20598679-20598698 None:intergenic 15.0%
!! ACAAAAATAGATTGAAATTT+GGG + chr1.2:20598678-20598697 None:intergenic 15.0%
!! TTTCTTATAATAATTGAGAA+TGG - chr1.2:20596812-20596831 MS.gene067203:intron 15.0%
!!! AAAATTTTCATGATATAAAG+TGG + chr1.2:20598870-20598889 None:intergenic 15.0%
!!! TTATAATTTCTTTGATTTCA+TGG - chr1.2:20596486-20596505 MS.gene067203:intron 15.0%
!! ATAGCATATCAATAACAAAA+TGG + chr1.2:20597846-20597865 None:intergenic 20.0%
!! ATATCAATAACAAAATGGAT+TGG + chr1.2:20597841-20597860 None:intergenic 20.0%
!! ATCAATATCTATTTAAACAG+AGG - chr1.2:20597294-20597313 MS.gene067203:intron 20.0%
!! ATGTATAAAGTAGTTAATGA+TGG - chr1.2:20599002-20599021 MS.gene067203:intron 20.0%
!! CAAAAATAGATTGAAATTTG+GGG + chr1.2:20598677-20598696 None:intergenic 20.0%
!! TACGGATTTATTATCATTAA+CGG - chr1.2:20596703-20596722 MS.gene067203:intron 20.0%
!! TTTATTATCATTAACGGAAT+TGG - chr1.2:20596709-20596728 MS.gene067203:intron 20.0%
!!! ATTTTAAGCAATGTATTGAT+TGG + chr1.2:20596360-20596379 None:intergenic 20.0%
!!! CAACAATGATATTTTGTTAT+TGG - chr1.2:20596383-20596402 MS.gene067203:intron 20.0%
!!! GGTTCTGAAATTTTAAATTT+TGG + chr1.2:20598656-20598675 None:intergenic 20.0%
!!! TATTCTTTTGAAAACCAAAT+AGG + chr1.2:20597323-20597342 None:intergenic 20.0%
!!! TTATTACAGGGTTTTAAAAA+TGG + chr1.2:20596193-20596212 None:intergenic 20.0%
! AACAAAGAAAACATTGTGTA+AGG + chr1.2:20598095-20598114 None:intergenic 25.0%
! AAGGTTTCAATTATTCTAGA+TGG - chr1.2:20598499-20598518 MS.gene067203:intron 25.0%
! AATGATAATAAATCCGTACA+TGG + chr1.2:20596701-20596720 None:intergenic 25.0%
! ACATGAAAGGTTATTATTAC+AGG + chr1.2:20596206-20596225 None:intergenic 25.0%
! AGACACAAAAAATAGATAGT+GGG + chr1.2:20599050-20599069 None:intergenic 25.0%
! AGTAGTATGTTTACATTACA+TGG + chr1.2:20597745-20597764 None:intergenic 25.0%
! ATAGTAATTGTGAATGAAAG+TGG + chr1.2:20597533-20597552 None:intergenic 25.0%
! ATGACCAAAATCATTTGATA+CGG + chr1.2:20598618-20598637 None:intergenic 25.0%
! ATTCTATTGGACTTAAAATG+TGG - chr1.2:20596545-20596564 MS.gene067203:intron 25.0%
! CATAAATTGTTCTTCACAAA+TGG - chr1.2:20596442-20596461 MS.gene067203:intron 25.0%
! CATGAAAGGTTATTATTACA+GGG + chr1.2:20596205-20596224 None:intergenic 25.0%
! CTCTATAAATACTGCTAAAT+GGG + chr1.2:20598799-20598818 None:intergenic 25.0%
! GAATTCACATGACAAATTTA+AGG - chr1.2:20598142-20598161 MS.gene067203:intron 25.0%
! GCGAAAAATATTATGATTGA+CGG - chr1.2:20598746-20598765 MS.gene067203:intron 25.0%
! GTTGTATATTTGCTTCAATT+TGG - chr1.2:20596570-20596589 MS.gene067203:intron 25.0%
! TAAAAACAAACAACCATGTA+CGG - chr1.2:20596685-20596704 MS.gene067203:intron 25.0%
! TACAAGAAATCTGAACTAAT+TGG + chr1.2:20596892-20596911 None:intergenic 25.0%
! TAGACACAAAAAATAGATAG+TGG + chr1.2:20599051-20599070 None:intergenic 25.0%
! TAGAGCAAAAGTTGTATATT+TGG + chr1.2:20597806-20597825 None:intergenic 25.0%
! TATAAAGTAGTTAATGATGG+TGG - chr1.2:20599005-20599024 MS.gene067203:intron 25.0%
! TATGTTTACATTACATGGAT+AGG + chr1.2:20597740-20597759 None:intergenic 25.0%
! TGTTTGATACATATATGCTT+TGG - chr1.2:20596948-20596967 MS.gene067203:CDS 25.0%
! TTCTAAATGAGACATATACA+TGG + chr1.2:20596334-20596353 None:intergenic 25.0%
! TTGGTTTCATTCTATTCTAT+TGG - chr1.2:20596532-20596551 MS.gene067203:intron 25.0%
! TTTGTCTTTATATCTCCAAA+TGG + chr1.2:20598965-20598984 None:intergenic 25.0%
!! AAGAGGCATAATATATTTAG+CGG - chr1.2:20598301-20598320 MS.gene067203:CDS 25.0%
!! ATTGATATGCTATTTGTACA+TGG - chr1.2:20597853-20597872 MS.gene067203:CDS 25.0%
!! TAATTTCTTTGATTTCATGG+AGG - chr1.2:20596489-20596508 MS.gene067203:intron 25.0%
AAATACCTTGAAAATGCTCT+GGG + chr1.2:20597580-20597599 None:intergenic 30.0%
ACATATTCCATATCTTCTAC+TGG + chr1.2:20597960-20597979 None:intergenic 30.0%
AGAGAATGCAAAGTAAAGAT+TGG - chr1.2:20598430-20598449 MS.gene067203:intron 30.0%
AGCAAAAGTTGTATATTTGG+TGG + chr1.2:20597803-20597822 None:intergenic 30.0%
AGCTAATTGAAACTTTGCTA+CGG - chr1.2:20598817-20598836 MS.gene067203:intron 30.0%
AGTAGAAGATATGGAATATG+TGG - chr1.2:20597959-20597978 MS.gene067203:CDS 30.0%
ATACATGGTTGACTGAAAAT+GGG + chr1.2:20596319-20596338 None:intergenic 30.0%
ATATCTCCAAATGGAAGAAA+TGG + chr1.2:20598956-20598975 None:intergenic 30.0%
CATTACTAATTGAAACTCGT+TGG - chr1.2:20597048-20597067 MS.gene067203:CDS 30.0%
GCTCTATAAATACTGCTAAA+TGG + chr1.2:20598800-20598819 None:intergenic 30.0%
GTAAGTTCAAAGCTTGTATA+AGG + chr1.2:20599260-20599279 None:intergenic 30.0%
GTAGAAGATATGGAATATGT+GGG - chr1.2:20597960-20597979 MS.gene067203:CDS 30.0%
GTCTGAGTTCAAAATGAATT+GGG - chr1.2:20597166-20597185 MS.gene067203:intron 30.0%
TAAAACGCTAATCACATGAA+AGG + chr1.2:20596219-20596238 None:intergenic 30.0%
TATACATGGTTGACTGAAAA+TGG + chr1.2:20596320-20596339 None:intergenic 30.0%
TGGATTAAGCAAATGATTTG+TGG + chr1.2:20597783-20597802 None:intergenic 30.0%
TGTTCAAAATCATGTGTTCA+AGG - chr1.2:20598480-20598499 MS.gene067203:intron 30.0%
TTAAACAGAGGATACCTATT+TGG - chr1.2:20597306-20597325 MS.gene067203:intron 30.0%
TTACAGATGTTGCAATGAAA+TGG + chr1.2:20599175-20599194 None:intergenic 30.0%
TTGCAATGAAATGGACAATA+AGG + chr1.2:20599166-20599185 None:intergenic 30.0%
TTTGCCAAAATGATCTTAAC+CGG - chr1.2:20599100-20599119 MS.gene067203:intron 30.0%
! GATTAAGCAAATGATTTGTG+GGG + chr1.2:20597781-20597800 None:intergenic 30.0%
! GGATTAAGCAAATGATTTGT+GGG + chr1.2:20597782-20597801 None:intergenic 30.0%
! GTAACCGTATCAAATGATTT+TGG - chr1.2:20598611-20598630 MS.gene067203:intron 30.0%
! TTTTGTGACATCATTAGACA+AGG - chr1.2:20598166-20598185 MS.gene067203:CDS 30.0%
!! TTCTTTTGGGGAAGTTATAT+AGG + chr1.2:20599285-20599304 None:intergenic 30.0%
AAAATGAATTGGGTACAACG+CGG - chr1.2:20597176-20597195 MS.gene067203:intron 35.0%
AAGGAACATGACTTGAAAGT+TGG - chr1.2:20597473-20597492 MS.gene067203:intron 35.0%
ACATGAATGAGTTATTGCGA+AGG - chr1.2:20597342-20597361 MS.gene067203:intron 35.0%
ACGTTGCATACTTGCTTATT+TGG - chr1.2:20596513-20596532 MS.gene067203:intron 35.0%
AGTGATTAAGCAAACTGTGT+TGG + chr1.2:20596976-20596995 None:intergenic 35.0%
ATAACTTCCCCAAAAGAAGA+GGG - chr1.2:20599287-20599306 MS.gene067203:CDS 35.0%
ATATCGCTTAGACTTCCAAA+TGG - chr1.2:20597143-20597162 MS.gene067203:intron 35.0%
ATTCAGTGGAGTTGAAAGTA+GGG - chr1.2:20598326-20598345 MS.gene067203:intron 35.0%
CTAACAACAATATTAGGGAG+TGG + chr1.2:20598529-20598548 None:intergenic 35.0%
GAAATACCTTGAAAATGCTC+TGG + chr1.2:20597581-20597600 None:intergenic 35.0%
GAAATGGAGAGGAACATAAA+TGG + chr1.2:20598940-20598959 None:intergenic 35.0%
GATTATGAGTGGTTCACTAA+AGG - chr1.2:20598391-20598410 MS.gene067203:intron 35.0%
GGAGGCTAACAACAATATTA+GGG + chr1.2:20598534-20598553 None:intergenic 35.0%
GGTCTGAGTTCAAAATGAAT+TGG - chr1.2:20597165-20597184 MS.gene067203:intron 35.0%
GTGATTAAGCAAACTGTGTT+GGG + chr1.2:20596975-20596994 None:intergenic 35.0%
TAATTGAAACTTTGCTACGG+TGG - chr1.2:20598820-20598839 MS.gene067203:intron 35.0%
TACATGGTTGACTGAAAATG+GGG + chr1.2:20596318-20596337 None:intergenic 35.0%
TAGTTCTCCACTTAAAGAGT+TGG + chr1.2:20596791-20596810 None:intergenic 35.0%
TATAACTTCCCCAAAAGAAG+AGG - chr1.2:20599286-20599305 MS.gene067203:CDS 35.0%
TATATTTAGCGGAGATTCAG+TGG - chr1.2:20598312-20598331 MS.gene067203:intron 35.0%
TATCGCTTAGACTTCCAAAT+GGG - chr1.2:20597144-20597163 MS.gene067203:intron 35.0%
TCGGAATCAAAAGAAGAAGT+TGG + chr1.2:20597895-20597914 None:intergenic 35.0%
TTGCAACATCTGTAATTGCA+TGG - chr1.2:20599180-20599199 MS.gene067203:intron 35.0%
TTTGGAAGTCTAAGCGATAT+TGG + chr1.2:20597143-20597162 None:intergenic 35.0%
TTTGTTCTTGTATATGCAGC+TGG - chr1.2:20598258-20598277 MS.gene067203:CDS 35.0%
! ATGGAATATGTGGGCAATTT+TGG - chr1.2:20597969-20597988 MS.gene067203:CDS 35.0%
! ATTTTGAACTCAGACCCATT+TGG + chr1.2:20597161-20597180 None:intergenic 35.0%
! GTGGATAAAGTGTATTGACA+CGG - chr1.2:20598839-20598858 MS.gene067203:intron 35.0%
!! TGGTTGGAAGTCATTTTCAA+AGG - chr1.2:20597454-20597473 MS.gene067203:intron 35.0%
AACCACTAGTGCTAATCACT+TGG - chr1.2:20596760-20596779 MS.gene067203:intron 40.0%
AACCACTCATAATCGAGGTA+TGG + chr1.2:20598385-20598404 None:intergenic 40.0%
AAGAGCTGCACAAAAACACA+TGG - chr1.2:20598005-20598024 MS.gene067203:CDS 40.0%
AGATTCTCACACCACAATTG+TGG + chr1.2:20598572-20598591 None:intergenic 40.0%
ATCCATACCTCGATTATGAG+TGG - chr1.2:20598380-20598399 MS.gene067203:intron 40.0%
ATGAGTGGTTCACTAAAGGT+TGG - chr1.2:20598395-20598414 MS.gene067203:intron 40.0%
ATGATGTCGAGTGTTCACAA+TGG - chr1.2:20596038-20596057 MS.gene067203:intron 40.0%
ATTAGTGCTACGCATGACTT+TGG - chr1.2:20596911-20596930 MS.gene067203:intron 40.0%
CACAAAACGCGCTATATACA+TGG + chr1.2:20598216-20598235 None:intergenic 40.0%
CGGAGGCTAACAACAATATT+AGG + chr1.2:20598535-20598554 None:intergenic 40.0%
GAATGAGTTATTGCGAAGGA+AGG - chr1.2:20597346-20597365 MS.gene067203:intron 40.0%
GATTCAGTGGAGTTGAAAGT+AGG - chr1.2:20598325-20598344 MS.gene067203:intron 40.0%
GCACAAAAACACATGGTCTA+AGG - chr1.2:20598012-20598031 MS.gene067203:CDS 40.0%
GGAAATTCGTAGAGAGACAT+TGG - chr1.2:20597102-20597121 MS.gene067203:CDS 40.0%
GGTCATACCAACTCTTTAAG+TGG - chr1.2:20596781-20596800 MS.gene067203:intron 40.0%
TAACTTCCCCAAAAGAAGAG+GGG - chr1.2:20599288-20599307 MS.gene067203:CDS 40.0%
TAGTGAACCACTCATAATCG+AGG + chr1.2:20598390-20598409 None:intergenic 40.0%
TCAATGCAGCAAAGCATACA+TGG + chr1.2:20596655-20596674 None:intergenic 40.0%
TCCAAATGGAAGAAATGGAG+AGG + chr1.2:20598951-20598970 None:intergenic 40.0%
TCCTCTCCATTTCTTCCATT+TGG - chr1.2:20598947-20598966 MS.gene067203:intron 40.0%
TGTCTCTCTACGAATTTCCT+TGG + chr1.2:20597101-20597120 None:intergenic 40.0%
TGTTCTTGCAGATGATTCCA+AGG - chr1.2:20597081-20597100 MS.gene067203:CDS 40.0%
TTATGCCTCTTCAACAGACT+TGG + chr1.2:20598292-20598311 None:intergenic 40.0%
TTCAGTGGAGTTGAAAGTAG+GGG - chr1.2:20598327-20598346 MS.gene067203:intron 40.0%
TTGCATTCTCTCACGAATTC+TGG + chr1.2:20598421-20598440 None:intergenic 40.0%
! AAGGCAACGATTAGAAGTGT+TGG - chr1.2:20597365-20597384 MS.gene067203:intron 40.0%
! ACCTTTTCCCCTCTTCTTTT+GGG + chr1.2:20599298-20599317 None:intergenic 40.0%
! ACGATGTTTGGCTTCAGAAT+TGG - chr1.2:20597201-20597220 MS.gene067203:intron 40.0%
! GAAGCCGGTTAAGATCATTT+TGG + chr1.2:20599107-20599126 None:intergenic 40.0%
! GATAAAGTGTATTGACACGG+TGG - chr1.2:20598842-20598861 MS.gene067203:intron 40.0%
! GGGAATGGTTTCTTTGTTGT+TGG + chr1.2:20597560-20597579 None:intergenic 40.0%
! TTTGGCTTCAGAATTGGAAG+AGG - chr1.2:20597207-20597226 MS.gene067203:intron 40.0%
!! AACGATTAGAAGTGTTGGTG+AGG - chr1.2:20597370-20597389 MS.gene067203:intron 40.0%
!! AGCAGTTTTGTAATGCAGGT+TGG - chr1.2:20597434-20597453 MS.gene067203:intron 40.0%
!! CAAGAGCAGTTTTGTAATGC+AGG - chr1.2:20597430-20597449 MS.gene067203:intron 40.0%
!! TATGTGGGCAATTTTGGAGA+AGG - chr1.2:20597975-20597994 MS.gene067203:CDS 40.0%
!! TGATGGTGGAATCTACTTAG+TGG - chr1.2:20599019-20599038 MS.gene067203:intron 40.0%
!!! CTCGTTGGTTTTCTGTATGT+CGG + chr1.2:20597914-20597933 None:intergenic 40.0%
!!! GTTTTGTAATGCAGGTTGGT+TGG - chr1.2:20597438-20597457 MS.gene067203:intron 40.0%
ACAGAAAACCAACGAGTCCA+AGG - chr1.2:20597918-20597937 MS.gene067203:CDS 45.0%
ATATGCAGTTGTTGCGAAGC+CGG + chr1.2:20599122-20599141 None:intergenic 45.0%
GACAACGCCAGTAGAAGATA+TGG - chr1.2:20597950-20597969 MS.gene067203:CDS 45.0%
GACCAAGTGATTAGCACTAG+TGG + chr1.2:20596765-20596784 None:intergenic 45.0%
GCTTCACACAACAAGCATCA+AGG + chr1.2:20599355-20599374 None:intergenic 45.0%
GGAGAGGAACATAAATGGAG+AGG + chr1.2:20598935-20598954 None:intergenic 45.0%
GGTGGAATCTACTTAGTGGT+AGG - chr1.2:20599023-20599042 MS.gene067203:intron 45.0%
TACTGCCAAGTCTGTTGAAG+AGG - chr1.2:20598284-20598303 MS.gene067203:CDS 45.0%
TGAAAGTAGGGGAAGGAACA+TGG - chr1.2:20598338-20598357 MS.gene067203:intron 45.0%
TGATATCGCCACCACAATTG+TGG - chr1.2:20598558-20598577 MS.gene067203:intron 45.0%
TTCTCACACCACAATTGTGG+TGG + chr1.2:20598569-20598588 None:intergenic 45.0%
! AGGAACATGGTTTGTAGAGG+TGG - chr1.2:20598351-20598370 MS.gene067203:intron 45.0%
! ATAGAAAGCTAGCTTGCAGC+TGG + chr1.2:20599216-20599235 None:intergenic 45.0%
! CCTTTTCCCCTCTTCTTTTG+GGG + chr1.2:20599297-20599316 None:intergenic 45.0%
! CTGATTTTCCTTGGACTCGT+TGG + chr1.2:20597929-20597948 None:intergenic 45.0%
! GACCTTTTCCCCTCTTCTTT+TGG + chr1.2:20599299-20599318 None:intergenic 45.0%
! GGAACATGGTTTGTAGAGGT+GGG - chr1.2:20598352-20598371 MS.gene067203:intron 45.0%
! GGAAGGAACATGGTTTGTAG+AGG - chr1.2:20598348-20598367 MS.gene067203:intron 45.0%
! TTGTGGTGGCGATATCATTG+CGG + chr1.2:20598555-20598574 None:intergenic 45.0%
!! CCATTCCCAGAGCATTTTCA+AGG - chr1.2:20597572-20597591 MS.gene067203:intron 45.0%
!! CCTTGAAAATGCTCTGGGAA+TGG + chr1.2:20597575-20597594 None:intergenic 45.0%
!! TAGAAGTGTTGGTGAGGACA+GGG - chr1.2:20597376-20597395 MS.gene067203:intron 45.0%
!! TTAGAAGTGTTGGTGAGGAC+AGG - chr1.2:20597375-20597394 MS.gene067203:intron 45.0%
!!! GCGTTGTCACTGATTTTCCT+TGG + chr1.2:20597938-20597957 None:intergenic 45.0%
CCCCAAAAGAAGAGGGGAAA+AGG - chr1.2:20599294-20599313 MS.gene067203:CDS 50.0%
GGTTAATGAGCGAATCGCTC+AGG + chr1.2:20596744-20596763 None:intergenic 50.0%
GTGGAGTTGAAAGTAGGGGA+AGG - chr1.2:20598331-20598350 MS.gene067203:intron 50.0%
TACAACGCGGTGACGATGTT+TGG - chr1.2:20597189-20597208 MS.gene067203:intron 50.0%
TCGAGTGTTCACAATGGACG+TGG - chr1.2:20596044-20596063 MS.gene067203:intron 50.0%
TTTGCGCGCTCTCTCAGATG+TGG - chr1.2:20597230-20597249 MS.gene067203:CDS 55.0%
! TGGTGGCGATATCATTGCGG+AGG + chr1.2:20598552-20598571 None:intergenic 55.0%
GGACGTGGCAGTGAAGCTCA+TGG - chr1.2:20596059-20596078 MS.gene067203:intron 60.0%
! GTGTTGGTGAGGACAGGGCA+TGG - chr1.2:20597381-20597400 MS.gene067203:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 20596032 20599382 20596032 ID=MS.gene067203
chr1.2 mRNA 20596032 20599382 20596032 ID=MS.gene067203.t1;Parent=MS.gene067203
chr1.2 exon 20599281 20599382 20599281 ID=MS.gene067203.t1.exon1;Parent=MS.gene067203.t1
chr1.2 CDS 20599281 20599382 20599281 ID=cds.MS.gene067203.t1;Parent=MS.gene067203.t1
chr1.2 exon 20598152 20598322 20598152 ID=MS.gene067203.t1.exon2;Parent=MS.gene067203.t1
chr1.2 CDS 20598152 20598322 20598152 ID=cds.MS.gene067203.t1;Parent=MS.gene067203.t1
chr1.2 exon 20597821 20598100 20597821 ID=MS.gene067203.t1.exon3;Parent=MS.gene067203.t1
chr1.2 CDS 20597821 20598100 20597821 ID=cds.MS.gene067203.t1;Parent=MS.gene067203.t1
chr1.2 exon 20597227 20597285 20597227 ID=MS.gene067203.t1.exon4;Parent=MS.gene067203.t1
chr1.2 CDS 20597227 20597285 20597227 ID=cds.MS.gene067203.t1;Parent=MS.gene067203.t1
chr1.2 exon 20596913 20597137 20596913 ID=MS.gene067203.t1.exon5;Parent=MS.gene067203.t1
chr1.2 CDS 20596913 20597137 20596913 ID=cds.MS.gene067203.t1;Parent=MS.gene067203.t1
chr1.2 exon 20596032 20596040 20596032 ID=MS.gene067203.t1.exon6;Parent=MS.gene067203.t1
chr1.2 CDS 20596032 20596040 20596032 ID=cds.MS.gene067203.t1;Parent=MS.gene067203.t1
Gene Sequence

>MS.gene067203

ATGAGCATGATGTCGAGTGTTCACAATGGACGTGGCAGTGAAGCTCATGGAATGCATTTCTATCTAACTATTCAACTTCGTCAGTTGCAAGATGCAGAGTTTGTAAGCATTTTCACTTCTTCCTTTTTTCTTATTCATTCATTTCTTTCGATTATTTTCCATTTTTAAAACCCTGTAATAATAACCTTTCATGTGATTAGCGTTTTAGTAAAGTTTATTCTTTCGATTATTTTAATTTTTACATTATTTAATAAACTTTGCTTCTTCTCAAGAAAAAAAAAAACCCCATTTTCAGTCAACCATGTATATGTCTCATTTAGAAGCACCAATCAATACATTGCTTAAAATTTGCAACAATGATATTTTGTTATTGGAATTGATGAATGTTAAGATTTGAAAGTTGTTAAATTCATAAATTGTTCTTCACAAATGGAGAATCAAATGCTATTATTTCTTATAATTTCTTTGATTTCATGGAGGAACGTTGCATACTTGCTTATTTGGTTTCATTCTATTCTATTGGACTTAAAATGTGGATGTTGTATATTTGCTTCAATTTGGTACTGTATTCAACTTCATTTTCATTATTCAATGAAGTTTGCTTCGTATTAAAATAACAACCATGTATGCTTTGCTGCATTGATCATCATTACTAAAAACAAACAACCATGTACGGATTTATTATCATTAACGGAATTGGTTTTTCGCTCCTGAGCGATTCGCTCATTAACCACTAGTGCTAATCACTTGGTCATACCAACTCTTTAAGTGGAGAACTAATTTCTTATAATAATTGAGAATGGAATGTTGCACACATACTTGCATTATGAGATGACTTGTGTGTATCTACTTGACTTCCAATTAGTTCAGATTTCTTGTATTAGTGCTACGCATGACTTTGGTTCTAAACTCATTTTGTTTGATACATATATGCTTTGGTCCCAACACAGTTTGCTTAATCACTAATGAAGTTTGCTGCATTAATCACTTGATGTATGCTTTGCTGCATTAATCTTCATTACTAATTGAAACTCGTTGGTTTTTGAAAATGTTCTTGCAGATGATTCCAAGGAAATTCGTAGAGAGACATTGGAAAGATGTATCAAATCCAATATCGCTTAGACTTCCAAATGGGTCTGAGTTCAAAATGAATTGGGTACAACGCGGTGACGATGTTTGGCTTCAGAATTGGAAGAGGTTTGCGCGCTCTCTCAGATGTGGAGATCTTGTAGTAATATCACTTAGTTCATGAATAAATTTTAATCAATATCTATTTAAACAGAGGATACCTATTTGGTTTTCAAAAGAATACATGAATGAGTTATTGCGAAGGAAGGCAACGATTAGAAGTGTTGGTGAGGACAGGGCATGGTACGTGACGTTAAACTTTGATAAAAGCAAGAGCAGTTTTGTAATGCAGGTTGGTTGGAAGTCATTTTCAAAGGAACATGACTTGAAAGTTGGTGATGTATGTAAATTTGATACGACTCAACGCGAACCACTTTCATTCACAATTACTATTATTCCAACAACAAAGAAACCATTCCCAGAGCATTTTCAAGGTATTTCTTTCATTATTATTATTTTCGAAAGATAAATGTTTTAATATAGTTAATTTTAATACATTTTATCAAAGTAAATAGTTTTAACTTGTCAACAAATAACAAACAATCATGTGTAATTTTTTTTTAAGATTTAAGTAATACCTATCCATGTAATGTAAACATACTACTTTTTGCTTTTAATCCCCACAAATCATTTGCTTAATCCACCAAATATACAACTTTTGCTCTACAACTCAACTTACCAATCCATTTTGTTATTGATATGCTATTTGTACATGGCATTAGTAGATTTTCTCCAACTTCTTCTTTTGATTCCGACATACAGAAAACCAACGAGTCCAAGGAAAATCAGTGACAACGCCAGTAGAAGATATGGAATATGTGGGCAATTTTGGAGAAGGAAATTCAAAGAGCTGCACAAAAACACATGGTCTAAGGAGTATTCATCTTAATTTTATTTGTTGAAGTTTTATTGTGTACAATTCATGCAAATATCCTTACACAATGTTTTCTTTGTTCTTAATTACTGCAGATTCTGTAAGTACGAATTCACATGACAAATTTAAGGTTTTTGTGACATCATTAGACAAGGTATGAATAACATAAAATGTTGATACCATGTATATAGCGCGTTTTGTGTGTGAATGTGAATTTTTTTTAATTTGTTCTTGTATATGCAGCTGGTTGTACTGCCAAGTCTGTTGAAGAGGCATAATATATTTAGCGGAGATTCAGTGGAGTTGAAAGTAGGGGAAGGAACATGGTTTGTAGAGGTGGGTTATAATCCATACCTCGATTATGAGTGGTTCACTAAAGGTTGGCCAGAATTCGTGAGAGAATGCAAAGTAAAGATTGGAGACACTTGTTTGTTTGAGATGATTGATGTTCAAAATCATGTGTTCAAGGTTTCAATTATTCTAGATGGAAAGCCACTCCCTAATATTGTTGTTAGCCTCCGCAATGATATCGCCACCACAATTGTGGTGTGAGAATCTGTCACGTGTACGATGAATCGTAACCGTATCAAATGATTTTGGTCATATTCAAATCTTTTCACCAAAATTTAAAATTTCAGAACCCCAAATTTCAATCTATTTTTGTTCTATTGACAAATATTATGATTGACAGTCACTCAACTCTGTATTTCAAGCGAAAAATATTATGATTGACGGTCTCTCAACTCTGTATTTCAAGCACATCCCATTTAGCAGTATTTATAGAGCTAATTGAAACTTTGCTACGGTGGATAAAGTGTATTGACACGGTGGTGCCACTTTATATCATGAAAATTTTAAATTATTGCATATCGCAATGTGCTTCACTTTGAGTGAAGATCCTCTCCATTTATGTTCCTCTCCATTTCTTCCATTTGGAGATATAAAGACAAAAAAAAAAAATTGAAAAAATGTATAAAGTAGTTAATGATGGTGGAATCTACTTAGTGGTAGGACCCACTATCTATTTTTTGTGTCTATCTCTCTTCAAATTGCATCTTCTATTTATTTTGCCAAAATGATCTTAACCGGCTTCGCAACAACTGCATATGCAAACATGATTTAACGACAACCTTATTGTCCATTTCATTGCAACATCTGTAATTGCATGGACTCTTGATACCAGCTGCAAGCTAGCTTTCTATCATTTCAAACACTAATATAATCCTTATACAAGCTTTGAACTTACATCCTATATAACTTCCCCAAAAGAAGAGGGGAAAAGGTCAATATTTTTGAAGTATTGTAGACTTTGCGTGTGCCTTGATGCTTGTTGTGTGAAGCAAGCATGA
Protein sequence

>MS.gene067203.t1

MSMMSSVHNGRGSEAHGMHFYLTIQLRQLQDAEFMIPRKFVERHWKDVSNPISLRLPNGSEFKMNWVQRGDDVWLQNWKRFARSLRCGDLVRIPIWFSKEYMNELLRRKATIRSVGEDRAWYVTLNFDKSKSSFVMQVGWKSFSKEHDLKVGDVCKFDTTQREPLSFTITIIPTTKKPFPEHFQDSVSTNSHDKFKVFVTSLDKLVVLPSLLKRHNIFSGDSVELKVGEGTWFVEVGYNPYLDYEWFTKGWPEFVRECKVKIGDTCLFEMIDVQNHVFKQA