AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31884

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31884.t1 MTR_1g035520 64.972 354 69 6 3 356 85 383 1.08e-145 417
MS.gene31884.t1 MTR_6g061070 74.552 279 55 4 5 276 33 302 3.22e-136 396
MS.gene31884.t1 MTR_6g061070 80.000 80 15 1 277 356 392 470 4.78e-38 142
MS.gene31884.t1 MTR_1g033740 62.500 160 40 2 5 164 37 176 4.80e-63 199
MS.gene31884.t1 MTR_1g035480 61.875 160 39 2 5 164 32 169 1.92e-62 197
MS.gene31884.t1 MTR_1g035500 60.000 160 45 2 5 164 40 180 1.86e-61 195
MS.gene31884.t1 MTR_1g035510 45.798 238 102 5 5 239 1 214 3.34e-55 180
MS.gene31884.t1 MTR_1g035470 58.125 160 38 4 5 162 1 133 8.22e-52 169
MS.gene31884.t1 MTR_1g035620 31.640 433 164 15 6 355 25 408 7.77e-47 164
MS.gene31884.t1 MTR_1g035570 29.825 399 207 9 6 356 21 394 1.91e-45 160
MS.gene31884.t1 MTR_1g035640 38.095 273 134 11 6 276 21 260 1.17e-37 140
MS.gene31884.t1 MTR_1g050845 29.643 280 131 7 6 276 25 247 4.12e-29 119
MS.gene31884.t1 MTR_5g044670 28.975 283 168 10 5 280 31 287 9.74e-29 114
MS.gene31884.t1 MTR_6g043890 28.448 348 183 14 6 345 31 320 1.13e-28 114
MS.gene31884.t1 MTR_3g098790 31.786 280 155 10 5 276 28 279 1.02e-27 111
MS.gene31884.t1 MTR_1g035650 36.150 213 95 7 6 212 25 202 1.88e-27 107
MS.gene31884.t1 MTR_7g050710 30.108 279 169 6 6 277 29 288 1.02e-25 105
MS.gene31884.t1 MTR_1g108780 27.660 282 183 10 3 280 10 274 2.12e-24 103
MS.gene31884.t1 MTR_7g050720 29.930 284 181 8 5 280 25 298 8.95e-24 100
MS.gene31884.t1 MTR_7g050580 29.391 279 156 8 5 277 28 271 1.67e-23 99.4
MS.gene31884.t1 MTR_4g119990 26.408 284 181 10 6 280 31 295 3.32e-23 99.8
MS.gene31884.t1 MTR_7g050590 26.882 279 180 6 5 277 1 261 8.30e-22 94.4
MS.gene31884.t1 MTR_3g061310 29.412 289 164 13 6 290 26 278 2.32e-20 90.1
MS.gene31884.t1 MTR_3g061350 29.210 291 161 15 6 290 26 277 2.68e-18 84.3
MS.gene31884.t1 MTR_7g050560 26.829 287 153 9 5 277 28 271 3.27e-18 84.7
MS.gene31884.t1 MTR_3g061370 29.352 293 158 15 6 290 23 274 3.35e-17 81.3
MS.gene31884.t1 MTR_3g061330 31.250 224 102 9 6 217 26 209 2.03e-16 78.2
MS.gene31884.t1 MTR_8g103940 25.243 309 190 12 6 302 55 334 3.69e-16 79.7
MS.gene31884.t1 MTR_1g035490 50.000 78 35 3 280 356 254 328 7.16e-16 78.2
MS.gene31884.t1 MTR_1g035460 24.742 291 184 10 5 280 1 271 7.87e-16 78.6
MS.gene31884.t1 MTR_3g061320 28.374 289 161 14 6 290 26 272 8.00e-16 77.0
MS.gene31884.t1 MTR_3g061290 36.885 122 66 4 6 124 26 139 1.88e-14 71.6
MS.gene31884.t1 MTR_3g061340 25.714 280 157 10 6 280 26 259 7.99e-14 71.2
MS.gene31884.t1 MTR_3g061220 37.624 101 49 2 6 104 26 114 1.90e-12 63.9
MS.gene31884.t1 MTR_1g021330 23.171 328 204 13 6 300 42 354 2.48e-12 67.8
MS.gene31884.t1 MTR_1g035440 42.857 84 44 2 6 85 31 114 2.62e-12 66.6
MS.gene31884.t1 MTR_1g021320 31.724 145 91 4 6 144 198 340 3.04e-11 65.1
MS.gene31884.t1 MTR_7g050640 43.590 78 41 2 5 79 28 105 6.47e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31884.t1 AT3G18990 23.151 311 201 12 6 286 22 324 1.90e-14 73.9
MS.gene31884.t1 AT3G18990 22.581 310 204 10 6 286 22 324 2.36e-14 73.9
MS.gene31884.t1 AT4G33280 25.517 290 176 11 5 280 38 301 1.46e-11 65.5

Find 61 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGACCCATTTGGAAGTTTA+AGG 0.148962 1.2:+20516960 None:intergenic
TATAATGAACATCTCGACTA+TGG 0.280428 1.2:-20514899 MS.gene31884:CDS
TTTGGAAGTTTAAGGGATAT+TGG 0.281020 1.2:+20516968 None:intergenic
TGCAACACAGTGATGGTATT+TGG 0.297148 1.2:-20516919 MS.gene31884:CDS
ATGGTATTTGGCTTCAAAAT+TGG 0.298035 1.2:-20516907 MS.gene31884:CDS
CACAAATTCTTGCCAGCCTT+TGG 0.300056 1.2:+20514868 None:intergenic
TATTCTTTCGAAAAGCAATT+AGG 0.323587 1.2:+20515712 None:intergenic
AGTTTAAGGGATATTGGATT+TGG 0.337634 1.2:+20516974 None:intergenic
AATCTGACCCTCCTTTGTAT+TGG 0.356917 1.2:+20516840 None:intergenic
AAGAAGCATGGTATATTTAG+TGG 0.374789 1.2:-20514974 MS.gene31884:CDS
AGACCCATTTGGAAGTTTAA+GGG 0.398720 1.2:+20516961 None:intergenic
ATTCAGTGGAGTTGAGAGTA+GGG 0.448522 1.2:-20514949 MS.gene31884:CDS
GGTCTGCGTGCAAAATGAAT+TGG 0.448911 1.2:-20516943 MS.gene31884:CDS
ATATCCCTTAAACTTCCAAA+TGG 0.449227 1.2:-20516965 MS.gene31884:CDS
TTAGAAGTGTTGGTGAGGAC+AGG 0.455257 1.2:-20515657 MS.gene31884:CDS
TGCTTCTTCAACAGCTCACT+TGG 0.461685 1.2:+20514989 None:intergenic
TGTTGAAGGTGATTATAGAT+TGG 0.466803 1.2:-20516129 MS.gene31884:intron
AAGGAACATGAGTTGAAAGT+TGG 0.478819 1.2:-20515559 MS.gene31884:CDS
TGAGAGTAGGGGAAGGAACA+TGG 0.483751 1.2:-20514937 MS.gene31884:CDS
TTATCGCCATGTCATGTTGA+AGG 0.488274 1.2:-20516143 MS.gene31884:CDS
GTCTGCGTGCAAAATGAATT+GGG 0.489112 1.2:-20516942 MS.gene31884:CDS
CATTAAACTTTCGTAAAAGC+AGG 0.501843 1.2:-20515621 MS.gene31884:CDS
AGTGAAACTAGGACTCTCAT+TGG 0.512039 1.2:+20516172 None:intergenic
AGAGATTGCAAAGTAAAGAC+TGG 0.515563 1.2:-20514845 MS.gene31884:CDS
AATTCAGTGGAGTTGAGAGT+AGG 0.518002 1.2:-20514950 MS.gene31884:CDS
TATCCCTTAAACTTCCAAAT+GGG 0.519149 1.2:-20516964 MS.gene31884:CDS
TTTGGCTTCAAAATTGGAAG+AGG 0.520115 1.2:-20516901 MS.gene31884:CDS
TAATGGAAACACAGGAGGCA+TGG 0.520474 1.2:-20516252 MS.gene31884:CDS
TGTGCAAAATCATGTGTTCA+AGG 0.521657 1.2:-20514795 MS.gene31884:CDS
TTCAGTGGAGTTGAGAGTAG+GGG 0.529294 1.2:-20514948 MS.gene31884:CDS
AAGGCAACAATTAGAAGTGT+TGG 0.542696 1.2:-20515667 MS.gene31884:CDS
AATGGAAACACAGGAGGCAT+GGG 0.543418 1.2:-20516251 MS.gene31884:CDS
TACATGAATGAGTTATTGCA+AGG 0.543984 1.2:-20515691 MS.gene31884:CDS
GTGAAACTAGGACTCTCATT+GGG 0.547777 1.2:+20516173 None:intergenic
ATAATGAACATCTCGACTAT+GGG 0.547880 1.2:-20514898 MS.gene31884:CDS
TATATTTAGTGGAAATTCAG+TGG 0.549056 1.2:-20514963 MS.gene31884:CDS
TACCTCTCTACAAAATTCCT+CGG 0.550263 1.2:+20517010 None:intergenic
ACTACTGCTGCTACACCTCA+AGG 0.560864 1.2:-20516614 MS.gene31884:CDS
TAGAAGTGTTGGTGAGGACA+GGG 0.562489 1.2:-20515656 MS.gene31884:CDS
GATAATTTGACAGTGAAACT+AGG 0.566923 1.2:+20516161 None:intergenic
AAAATTGGAAGAGGTTTGCA+TGG 0.571811 1.2:-20516892 MS.gene31884:CDS
ATGGGTGGTTCACCAAAGGC+TGG 0.573131 1.2:-20514880 MS.gene31884:CDS
GACTATGGGTGGTTCACCAA+AGG 0.573572 1.2:-20514884 MS.gene31884:CDS
TTGTGAATGTTACTCCCTTG+AGG 0.576438 1.2:+20516599 None:intergenic
TATTCAAGTTTGAGATGCAA+CGG 0.590567 1.2:-20516776 MS.gene31884:CDS
GCAGAGGCTAATGGAAACAC+AGG 0.596384 1.2:-20516260 MS.gene31884:intron
AACAATTAGAAGTGTTGGTG+AGG 0.601806 1.2:-20515662 MS.gene31884:CDS
TTTGCATGGTCGCTCCGATG+TGG 0.602338 1.2:-20516878 MS.gene31884:CDS
AGTGAGCTGTTGAAGAAGCA+TGG 0.617628 1.2:-20514986 MS.gene31884:CDS
GTGTTGGTGAGGACAGGGCA+TGG 0.626789 1.2:-20515651 MS.gene31884:CDS
GGAAGGAACATGGTTTGTAG+AGG 0.629163 1.2:-20514927 MS.gene31884:CDS
TGTTCTTGCAGATGATTCCG+AGG 0.632967 1.2:-20517027 MS.gene31884:CDS
ATGAACATCTCGACTATGGG+TGG 0.635276 1.2:-20514895 MS.gene31884:CDS
TAATCACCTTCAACATGACA+TGG 0.641985 1.2:+20516137 None:intergenic
GAATGAGTTATTGCAAGGGA+AGG 0.643476 1.2:-20515686 MS.gene31884:CDS
GTGGAGTTGAGAGTAGGGGA+AGG 0.647557 1.2:-20514944 MS.gene31884:CDS
CTACTGCTGCTACACCTCAA+GGG 0.653810 1.2:-20516613 MS.gene31884:CDS
ACATGAATGAGTTATTGCAA+GGG 0.661417 1.2:-20515690 MS.gene31884:CDS
AATTGGGTGCAACACAGTGA+TGG 0.677488 1.2:-20516926 MS.gene31884:CDS
AAACTAAAAGATCTCCACAT+CGG 0.700040 1.2:+20516864 None:intergenic
GAGGCTAATGGAAACACAGG+AGG 0.702704 1.2:-20516257 MS.gene31884:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATACTTTTGTAATTTGTA+TGG + chr1.2:20515391-20515410 None:intergenic 15.0%
!! ACTAATTGAAAACATATTCA+TGG - chr1.2:20515853-20515872 MS.gene31884:intron 20.0%
!! ATAATAATTGTGAATGAAAG+TGG + chr1.2:20516310-20516329 None:intergenic 20.0%
!! CAAGACAAAATTTATGTTTA+TGG + chr1.2:20516616-20516635 None:intergenic 20.0%
!! TAAACAGATGAATGAATAAA+AGG + chr1.2:20515293-20515312 None:intergenic 20.0%
!! TATTACAGAAAAAGTAGTAT+AGG + chr1.2:20515713-20515732 None:intergenic 20.0%
!! TTATTCATTCATCTGTTTAT+GGG - chr1.2:20515294-20515313 MS.gene31884:intron 20.0%
!! TTTATTCATTCATCTGTTTA+TGG - chr1.2:20515293-20515312 MS.gene31884:intron 20.0%
!!! AATAAACACATTGATTTTGT+TGG + chr1.2:20516549-20516568 None:intergenic 20.0%
!!! AATTTGTATGGATTAAAAAG+TGG + chr1.2:20515379-20515398 None:intergenic 20.0%
!!! ATAAACACATTGATTTTGTT+GGG + chr1.2:20516548-20516567 None:intergenic 20.0%
!!! ATGTTTATGGATTAAAAAGT+GGG + chr1.2:20516603-20516622 None:intergenic 20.0%
!!! TATGTTTATGGATTAAAAAG+TGG + chr1.2:20516604-20516623 None:intergenic 20.0%
! TATATTTAGTGGAAATTCAG+TGG - chr1.2:20516846-20516865 MS.gene31884:CDS 25.0%
! TATCAACAAGAGAAACATTT+GGG + chr1.2:20515815-20515834 None:intergenic 25.0%
! TATTCTTTCGAAAAGCAATT+AGG + chr1.2:20516100-20516119 None:intergenic 25.0%
! TTTGTTCATATATATGCAGT+TGG - chr1.2:20516789-20516808 MS.gene31884:CDS 25.0%
!! AACTATTTTCAGCATTTGAA+AGG + chr1.2:20515518-20515537 None:intergenic 25.0%
!! CAAAATTTGAGATGAACTAA+GGG + chr1.2:20515341-20515360 None:intergenic 25.0%
!! TTATTATTTTCATCGTCACT+GGG + chr1.2:20516481-20516500 None:intergenic 25.0%
!! TTTATTATTTTCATCGTCAC+TGG + chr1.2:20516482-20516501 None:intergenic 25.0%
!! TTTTATAACATCATCAGACA+AGG - chr1.2:20516703-20516722 MS.gene31884:CDS 25.0%
!!! AATTGATTCTCTTTTTCTTG+AGG + chr1.2:20515161-20515180 None:intergenic 25.0%
!!! ATTGATTCTCTTTTTCTTGA+GGG + chr1.2:20515160-20515179 None:intergenic 25.0%
!!! CTTTTAGTTTTCCAATACAA+AGG - chr1.2:20514958-20514977 MS.gene31884:CDS 25.0%
!!! TAGTTTTTAAAGTTTTGCAG+AGG - chr1.2:20515533-20515552 MS.gene31884:intron 25.0%
AAACTAAAAGATCTCCACAT+CGG + chr1.2:20514948-20514967 None:intergenic 30.0%
ACATGAATGAGTTATTGCAA+GGG - chr1.2:20516119-20516138 MS.gene31884:intron 30.0%
AGAGTGTACGTAAATAAAGT+GGG + chr1.2:20515429-20515448 None:intergenic 30.0%
AGTTTAAGGGATATTGGATT+TGG + chr1.2:20514838-20514857 None:intergenic 30.0%
ATAATGAACATCTCGACTAT+GGG - chr1.2:20516911-20516930 MS.gene31884:CDS 30.0%
ATATCCCTTAAACTTCCAAA+TGG - chr1.2:20514844-20514863 MS.gene31884:CDS 30.0%
ATCAACAAGAGAAACATTTG+GGG + chr1.2:20515814-20515833 None:intergenic 30.0%
CATTAAACTTTCGTAAAAGC+AGG - chr1.2:20516188-20516207 MS.gene31884:CDS 30.0%
CTATCAACAAGAGAAACATT+TGG + chr1.2:20515816-20515835 None:intergenic 30.0%
GATAATTTGACAGTGAAACT+AGG + chr1.2:20515651-20515670 None:intergenic 30.0%
GCTATATAATGAGATGTTCA+AGG - chr1.2:20516679-20516698 MS.gene31884:CDS 30.0%
TACATGAATGAGTTATTGCA+AGG - chr1.2:20516118-20516137 MS.gene31884:intron 30.0%
TATAATGAACATCTCGACTA+TGG - chr1.2:20516910-20516929 MS.gene31884:CDS 30.0%
TATCCCTTAAACTTCCAAAT+GGG - chr1.2:20514845-20514864 MS.gene31884:CDS 30.0%
TGTTGAAGGTGATTATAGAT+TGG - chr1.2:20515680-20515699 MS.gene31884:CDS 30.0%
TTTGGAAGTTTAAGGGATAT+TGG + chr1.2:20514844-20514863 None:intergenic 30.0%
! AAGAAGCATGGTATATTTAG+TGG - chr1.2:20516835-20516854 MS.gene31884:CDS 30.0%
! AAGAGTGTACGTAAATAAAG+TGG + chr1.2:20515430-20515449 None:intergenic 30.0%
! ACTTACCTGAAACTTTTTGT+TGG + chr1.2:20515260-20515279 None:intergenic 30.0%
! ATGGTATTTGGCTTCAAAAT+TGG - chr1.2:20514902-20514921 MS.gene31884:CDS 30.0%
! CCAAAATTTGAGATGAACTA+AGG + chr1.2:20515342-20515361 None:intergenic 30.0%
! CCTTAGTTCATCTCAAATTT+TGG - chr1.2:20515339-20515358 MS.gene31884:intron 30.0%
! CTTACCTGAAACTTTTTGTT+GGG + chr1.2:20515259-20515278 None:intergenic 30.0%
! TAGTTTTCCAATACAAAGGA+GGG - chr1.2:20514962-20514981 MS.gene31884:CDS 30.0%
! TATTCAAGTTTGAGATGCAA+CGG - chr1.2:20515033-20515052 MS.gene31884:intron 30.0%
! TTGATTCTCTTTTTCTTGAG+GGG + chr1.2:20515159-20515178 None:intergenic 30.0%
!! AGAGGCTTTCATTTTTCTAT+AGG - chr1.2:20515758-20515777 MS.gene31884:intron 30.0%
!! TTAGTATTTTCAGTGTCACT+AGG + chr1.2:20515132-20515151 None:intergenic 30.0%
!! TTAGTTTTCCAATACAAAGG+AGG - chr1.2:20514961-20514980 MS.gene31884:CDS 30.0%
AAAATTGGAAGAGGTTTGCA+TGG - chr1.2:20514917-20514936 MS.gene31884:CDS 35.0%
AACTAGCAGAAGAGACATTT+AGG - chr1.2:20515959-20515978 MS.gene31884:intron 35.0%
AGACCCATTTGGAAGTTTAA+GGG + chr1.2:20514851-20514870 None:intergenic 35.0%
AGAGATTGCAAAGTAAAGAC+TGG - chr1.2:20516964-20516983 MS.gene31884:CDS 35.0%
AGTAGTAGCAATGTCATTGA+TGG + chr1.2:20516509-20516528 None:intergenic 35.0%
ATAATACCTTGAAACTGCTC+CGG + chr1.2:20516358-20516377 None:intergenic 35.0%
CACACACATAGCTATATACA+TGG + chr1.2:20516753-20516772 None:intergenic 35.0%
GTAGTAGCAATGTCATTGAT+GGG + chr1.2:20516508-20516527 None:intergenic 35.0%
TAATCACCTTCAACATGACA+TGG + chr1.2:20515675-20515694 None:intergenic 35.0%
TACCTCTCTACAAAATTCCT+CGG + chr1.2:20514802-20514821 None:intergenic 35.0%
TAGTAGCAATGTCATTGATG+GGG + chr1.2:20516507-20516526 None:intergenic 35.0%
TATTATTATCCCAACCACGA+AGG - chr1.2:20516324-20516343 MS.gene31884:intron 35.0%
TGTGCAAAATCATGTGTTCA+AGG - chr1.2:20517014-20517033 MS.gene31884:CDS 35.0%
! AAGGAACATGAGTTGAAAGT+TGG - chr1.2:20516250-20516269 MS.gene31884:CDS 35.0%
! AAGGCAACAATTAGAAGTGT+TGG - chr1.2:20516142-20516161 MS.gene31884:CDS 35.0%
! AATTAGGTATCGTCTGTTTC+AGG + chr1.2:20516084-20516103 None:intergenic 35.0%
! TAAAGTTTTGCAGAGGCTAA+TGG - chr1.2:20515540-20515559 MS.gene31884:intron 35.0%
! TTTGGCTTCAAAATTGGAAG+AGG - chr1.2:20514908-20514927 MS.gene31884:CDS 35.0%
!! AACAATTAGAAGTGTTGGTG+AGG - chr1.2:20516147-20516166 MS.gene31884:CDS 35.0%
!! GGAATTTTGTAGAGAGGTAT+TGG - chr1.2:20514803-20514822 MS.gene31884:CDS 35.0%
!! TGGTTGGAAGTCATTTTCAA+AGG - chr1.2:20516231-20516250 MS.gene31884:CDS 35.0%
AATCTGACCCTCCTTTGTAT+TGG + chr1.2:20514972-20514991 None:intergenic 40.0%
AATTCAGTGGAGTTGAGAGT+AGG - chr1.2:20516859-20516878 MS.gene31884:CDS 40.0%
AGTGAAACTAGGACTCTCAT+TGG + chr1.2:20515640-20515659 None:intergenic 40.0%
ATTCAGTGGAGTTGAGAGTA+GGG - chr1.2:20516860-20516879 MS.gene31884:CDS 40.0%
CAGACCCATTTGGAAGTTTA+AGG + chr1.2:20514852-20514871 None:intergenic 40.0%
GAATGAGTTATTGCAAGGGA+AGG - chr1.2:20516123-20516142 MS.gene31884:intron 40.0%
GCAACCCAACAAAAAGTTTC+AGG - chr1.2:20515252-20515271 MS.gene31884:intron 40.0%
GTCTGCGTGCAAAATGAATT+GGG - chr1.2:20514867-20514886 MS.gene31884:CDS 40.0%
GTGAAACTAGGACTCTCATT+GGG + chr1.2:20515639-20515658 None:intergenic 40.0%
TAATACCTTGAAACTGCTCC+GGG + chr1.2:20516357-20516376 None:intergenic 40.0%
TGCAACACAGTGATGGTATT+TGG - chr1.2:20514890-20514909 MS.gene31884:CDS 40.0%
TTATCGCCATGTCATGTTGA+AGG - chr1.2:20515666-20515685 MS.gene31884:CDS 40.0%
TTGTGAATGTTACTCCCTTG+AGG + chr1.2:20515213-20515232 None:intergenic 40.0%
TTTGTACCTAACTGTGTGAG+AGG - chr1.2:20515740-20515759 MS.gene31884:intron 40.0%
! TTCCGAGGAATTTTGTAGAG+AGG - chr1.2:20514797-20514816 MS.gene31884:CDS 40.0%
!! CAGGAGCAGTTTTGTAATGA+GGG - chr1.2:20516207-20516226 MS.gene31884:CDS 40.0%
AATTGGGTGCAACACAGTGA+TGG - chr1.2:20514883-20514902 MS.gene31884:CDS 45.0%
AGTGAGCTGTTGAAGAAGCA+TGG - chr1.2:20516823-20516842 MS.gene31884:CDS 45.0%
ATGAACATCTCGACTATGGG+TGG - chr1.2:20516914-20516933 MS.gene31884:CDS 45.0%
ATTCGTGCACGAAATGTGCA+AGG + chr1.2:20516030-20516049 None:intergenic 45.0%
CACAAATTCTTGCCAGCCTT+TGG + chr1.2:20516944-20516963 None:intergenic 45.0%
GGTCTGCGTGCAAAATGAAT+TGG - chr1.2:20514866-20514885 MS.gene31884:CDS 45.0%
TAATGGAAACACAGGAGGCA+TGG - chr1.2:20515557-20515576 MS.gene31884:CDS 45.0%
TGAAAGCCTCTCACACAGTT+AGG + chr1.2:20515749-20515768 None:intergenic 45.0%
TGCTTCTTCAACAGCTCACT+TGG + chr1.2:20516823-20516842 None:intergenic 45.0%
TGTTCTTGCAGATGATTCCG+AGG - chr1.2:20514782-20514801 MS.gene31884:CDS 45.0%
TTCAGTGGAGTTGAGAGTAG+GGG - chr1.2:20516861-20516880 MS.gene31884:CDS 45.0%
! AATGGAAACACAGGAGGCAT+GGG - chr1.2:20515558-20515577 MS.gene31884:CDS 45.0%
! ATTTTGCACGCAGACCCATT+TGG + chr1.2:20514862-20514881 None:intergenic 45.0%
! GGAAGGAACATGGTTTGTAG+AGG - chr1.2:20516882-20516901 MS.gene31884:CDS 45.0%
! GTATCGTCTGTTTCAGGTCA+TGG + chr1.2:20516078-20516097 None:intergenic 45.0%
!! AGCAGTTTTGTAATGAGGGC+TGG - chr1.2:20516211-20516230 MS.gene31884:CDS 45.0%
!! GCAGGAGCAGTTTTGTAATG+AGG - chr1.2:20516206-20516225 MS.gene31884:CDS 45.0%
!! GTTTTGTAATGAGGGCTGGT+TGG - chr1.2:20516215-20516234 MS.gene31884:CDS 45.0%
!! TAGAAGTGTTGGTGAGGACA+GGG - chr1.2:20516153-20516172 MS.gene31884:CDS 45.0%
!! TTAGAAGTGTTGGTGAGGAC+AGG - chr1.2:20516152-20516171 MS.gene31884:CDS 45.0%
ACTACTGCTGCTACACCTCA+AGG - chr1.2:20515195-20515214 MS.gene31884:intron 50.0%
CTACTGCTGCTACACCTCAA+GGG - chr1.2:20515196-20515215 MS.gene31884:intron 50.0%
GACTATGGGTGGTTCACCAA+AGG - chr1.2:20516925-20516944 MS.gene31884:CDS 50.0%
GAGGCTAATGGAAACACAGG+AGG - chr1.2:20515552-20515571 MS.gene31884:intron 50.0%
GCAGAGGCTAATGGAAACAC+AGG - chr1.2:20515549-20515568 MS.gene31884:intron 50.0%
TGAGAGTAGGGGAAGGAACA+TGG - chr1.2:20516872-20516891 MS.gene31884:CDS 50.0%
AACCACGAAGGAACCATGCC+CGG - chr1.2:20516336-20516355 MS.gene31884:intron 55.0%
ATGGGTGGTTCACCAAAGGC+TGG - chr1.2:20516929-20516948 MS.gene31884:CDS 55.0%
GGCATGGTTCCTTCGTGGTT+GGG + chr1.2:20516336-20516355 None:intergenic 55.0%
GTGGAGTTGAGAGTAGGGGA+AGG - chr1.2:20516865-20516884 MS.gene31884:CDS 55.0%
TTTGCATGGTCGCTCCGATG+TGG - chr1.2:20514931-20514950 MS.gene31884:CDS 55.0%
CCATGCCCGGAGCAGTTTCA+AGG - chr1.2:20516349-20516368 MS.gene31884:intron 60.0%
CCTTGAAACTGCTCCGGGCA+TGG + chr1.2:20516352-20516371 None:intergenic 60.0%
GGGCATGGTTCCTTCGTGGT+TGG + chr1.2:20516337-20516356 None:intergenic 60.0%
! GTGTTGGTGAGGACAGGGCA+TGG - chr1.2:20516158-20516177 MS.gene31884:CDS 60.0%
CTCCGGGCATGGTTCCTTCG+TGG + chr1.2:20516341-20516360 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 20514781 20517050 20514781 ID=MS.gene31884
chr1.2 mRNA 20514781 20517050 20514781 ID=MS.gene31884.t1;Parent=MS.gene31884
chr1.2 exon 20516558 20517050 20516558 ID=MS.gene31884.t1.exon1;Parent=MS.gene31884.t1
chr1.2 CDS 20516558 20517050 20516558 ID=cds.MS.gene31884.t1;Parent=MS.gene31884.t1
chr1.2 exon 20516130 20516278 20516130 ID=MS.gene31884.t1.exon2;Parent=MS.gene31884.t1
chr1.2 CDS 20516130 20516278 20516130 ID=cds.MS.gene31884.t1;Parent=MS.gene31884.t1
chr1.2 exon 20515555 20515740 20515555 ID=MS.gene31884.t1.exon3;Parent=MS.gene31884.t1
chr1.2 CDS 20515555 20515740 20515555 ID=cds.MS.gene31884.t1;Parent=MS.gene31884.t1
chr1.2 exon 20514781 20515023 20514781 ID=MS.gene31884.t1.exon4;Parent=MS.gene31884.t1
chr1.2 CDS 20514781 20515023 20514781 ID=cds.MS.gene31884.t1;Parent=MS.gene31884.t1
Gene Sequence

>MS.gene31884

ATGTTCTTGCAGATGATTCCGAGGAATTTTGTAGAGAGGTATTGGAAAAATGTACCAAATCCAATATCCCTTAAACTTCCAAATGGGTCTGCGTGCAAAATGAATTGGGTGCAACACAGTGATGGTATTTGGCTTCAAAATTGGAAGAGGTTTGCATGGTCGCTCCGATGTGGAGATCTTTTAGTTTTCCAATACAAAGGAGGGTCAGATTTTAATGTCATTATATTAGATGATAGTAAATTAGAAATTGACTATTCAAGTTTGAGATGCAACGGCGATCAAGAAAATACTAAAGAGAGTCATGATGATGCTGACGACGACAACAATGATTATGAGTGTGTTGAGATTCCTAGTGACACTGAAAATACTAAAATTCCCCTCAAGAAAAAGAGAATCAATTCAAATGACATTGCTACTACTGCTGCTACACCTCAAGGGAGTAACATTCACAAGAGAAAAACTAATATCAATGCAACCCAACAAAAAGTTTCAGGTAAGTTATTCTACTTCCTTTTATTCATTCATCTGTTTATGGGCAAAATATGTTTTTAATTAGTCCCTTAGTTCATCTCAAATTTTGGTTTTAGTCTTCTTTCCACTTTTTAATCCATACAAATTACAAAAGTATATGTTTTTAGTTCTATACCCACTTTATTTACGTACACTCTTTTAAGATTAAATCAATTTTCAAGACTGTCATACAAAAAAATCAAGACGCAAACTTTTATTTTGTACCTTTCAAATGCTGAAAATAGTTTTTAAAGTTTTGCAGAGGCTAATGGAAACACAGGAGGCATGGGTAAGAAAGCTAAAAATGCACAAAAACTAAATGAGAGAAGTTGCACAAATTCTCATCCCAATGAGAGTCCTAGTTTCACTGTCAAATTATCGCCATGTCATGTTGAAGGTGATTATAGATTGGTATGTTTCCTATACTACTTTTTCTGTAATAGTGACATTTTGTACCTAACTGTGTGAGAGGCTTTCATTTTTCTATAGGAACTGAATGTATTGAAATTACAAACGAAATCCCCAAATGTTTCTCTTGTTGATAGTTTTATTGAATAAATTTACTAATTGAAAACATATTCATGGATTAATGTAAATTTATTCATTAAATTATTAACAAAAGAAAAAAGTATAGCAAACATACTAAAGACAGATTTGAAGATCAAAATAACTAGCAGAAGAGACATTTAGGCATATTTTTATAATTTTTGATACATTTAAGTACTGTTTGAATGAGCCTTGCACATTTCGTGCACGAATATATTTTAATCAATATTTGTTTAAACCATGACCTGAAACAGACGATACCTAATTGCTTTTCGAAAGAATACATGAATGAGTTATTGCAAGGGAAGGCAACAATTAGAAGTGTTGGTGAGGACAGGGCATGGCACGTGACATTAAACTTTCGTAAAAGCAGGAGCAGTTTTGTAATGAGGGCTGGTTGGAAGTCATTTTCAAAGGAACATGAGTTGAAAGTTGGTGATGTATGTAAATTTGAGATAACTCAACACGAACCACTTTCATTCACAATTATTATTATCCCAACCACGAAGGAACCATGCCCGGAGCAGTTTCAAGGTATTATATTAGATGATAGTAAATTAGAAATTGACTATTCAAGTATGATATGCAACAGCGTTAAAGAAAATACTAAAGAGTGTGATGATGATTATGATGATGAGATTCCCAGTGACGATGAAAATAATAAAAACCCCATCAATGACATTGCTACTACTGCTGCTATCAATGCAACCCAACAAAATCAATGTGTTTATTTCAAATTTTGTTTTCAGTCATTCTATTTCTACCCACTTTTTAATCCATAAACATAAATTTTGTCTTGAAATAAAATAAGATTTTAAATTTCTACACAATTTTCAATAAATGCTATATAATGAGATGTTCAAGGTTTTTATAACATCATCAGACAAGGTATGAATTACGTAAAATGCTGTTACCATGTATATAGCTATGTGTGTGAATGTATAAAATTTAATTTGTTCATATATATGCAGTTGGTTGTACTACCAAGTGAGCTGTTGAAGAAGCATGGTATATTTAGTGGAAATTCAGTGGAGTTGAGAGTAGGGGAAGGAACATGGTTTGTAGAGGTGAATTATAATGAACATCTCGACTATGGGTGGTTCACCAAAGGCTGGCAAGAATTTGTGAGAGATTGCAAAGTAAAGACTGGAGACACTTGCTTGTTTGAGACGATTGATGTGCAAAATCATGTGTTCAAGGTTTCAATTGTTTGA
Protein sequence

>MS.gene31884.t1

MFLQMIPRNFVERYWKNVPNPISLKLPNGSACKMNWVQHSDGIWLQNWKRFAWSLRCGDLLVFQYKGGSDFNVIILDDSKLEIDYSSLRCNGDQENTKESHDDADDDNNDYECVEIPSDTENTKIPLKKKRINSNDIATTAATPQGSNIHKRKTNINATQQKVSEANGNTGGMGKKAKNAQKLNERSCTNSHPNESPSFTVKLSPCHVEGDYRLTIPNCFSKEYMNELLQGKATIRSVGEDRAWHVTLNFRKSRSSFVMRAGWKSFSKEHELKVGDLVVLPSELLKKHGIFSGNSVELRVGEGTWFVEVNYNEHLDYGWFTKGWQEFVRDCKVKTGDTCLFETIDVQNHVFKVSIV