AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31887

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31887.t1 MTR_1g035620 87.770 417 47 3 1 416 1 414 0.0 749
MS.gene31887.t1 MTR_1g050845 82.322 379 51 3 1 378 1 364 0.0 619
MS.gene31887.t1 MTR_1g035570 44.419 430 182 11 1 410 1 393 1.52e-110 331
MS.gene31887.t1 MTR_1g035640 40.671 477 202 17 1 410 1 463 4.55e-94 290
MS.gene31887.t1 MTR_6g061070 35.011 457 237 11 9 410 18 469 1.47e-68 224
MS.gene31887.t1 MTR_1g035650 54.067 209 77 4 1 196 1 203 5.40e-66 209
MS.gene31887.t1 MTR_1g035490 43.416 281 139 9 139 410 58 327 3.06e-62 204
MS.gene31887.t1 MTR_5g044670 31.561 301 178 8 3 281 10 304 2.18e-33 128
MS.gene31887.t1 MTR_1g033740 42.331 163 73 4 9 156 22 178 5.65e-33 123
MS.gene31887.t1 MTR_3g098790 30.241 291 182 8 6 278 10 297 1.14e-32 125
MS.gene31887.t1 MTR_7g050710 30.363 303 174 9 6 278 10 305 1.22e-32 125
MS.gene31887.t1 MTR_8g103940 24.109 477 269 16 9 412 39 495 7.89e-32 126
MS.gene31887.t1 MTR_7g050580 29.730 296 168 10 6 278 10 288 9.39e-30 117
MS.gene31887.t1 MTR_7g050560 29.392 296 169 11 6 278 10 288 1.02e-27 112
MS.gene31887.t1 MTR_1g035480 39.306 173 83 6 2 156 3 171 3.13e-27 107
MS.gene31887.t1 MTR_6g043890 28.772 285 168 8 9 266 15 291 4.81e-27 110
MS.gene31887.t1 MTR_1g035500 36.810 163 91 4 5 156 21 182 1.99e-26 105
MS.gene31887.t1 MTR_1g108780 24.138 464 260 14 24 412 12 458 2.75e-26 110
MS.gene31887.t1 MTR_7g050720 28.939 311 175 11 6 278 7 309 1.61e-25 106
MS.gene31887.t1 MTR_1g035510 35.570 149 89 3 25 168 2 148 1.64e-22 95.5
MS.gene31887.t1 MTR_1g035510 42.574 101 55 2 267 364 122 222 2.23e-17 80.9
MS.gene31887.t1 MTR_4g119990 26.299 308 177 10 9 278 15 310 1.68e-22 98.6
MS.gene31887.t1 MTR_7g050590 27.622 286 166 8 25 278 2 278 3.97e-22 96.3
MS.gene31887.t1 MTR_1g035520 27.184 309 156 10 25 278 88 382 4.24e-22 97.4
MS.gene31887.t1 MTR_3g061310 25.086 291 185 9 6 278 9 284 3.30e-21 93.2
MS.gene31887.t1 MTR_3g061320 25.087 287 184 10 6 278 9 278 3.19e-20 90.5
MS.gene31887.t1 MTR_1g035470 43.434 99 55 1 25 123 2 99 3.20e-20 86.7
MS.gene31887.t1 MTR_3g061370 24.825 286 185 8 9 278 9 280 6.62e-19 86.7
MS.gene31887.t1 MTR_3g061290 32.370 173 105 5 6 174 9 173 1.59e-18 84.0
MS.gene31887.t1 MTR_3g061350 23.675 283 198 7 6 278 9 283 4.18e-18 84.3
MS.gene31887.t1 MTR_3g061340 25.352 284 182 9 6 278 9 273 4.41e-18 84.3
MS.gene31887.t1 MTR_3g061330 26.699 206 140 4 6 202 9 212 9.49e-18 82.8
MS.gene31887.t1 MTR_1g035460 24.830 294 171 9 25 278 2 285 6.42e-17 82.4
MS.gene31887.t1 MTR_1g035440 38.000 100 59 2 9 105 15 114 4.38e-14 72.0
MS.gene31887.t1 MTR_7g050640 38.462 91 54 1 8 96 12 102 1.25e-13 67.4
MS.gene31887.t1 MTR_3g005490 23.381 278 176 7 9 284 21 263 1.06e-12 68.2
MS.gene31887.t1 MTR_3g005480 22.222 288 172 8 7 284 19 264 1.28e-12 68.2
MS.gene31887.t1 MTR_5g070440 22.742 299 190 10 1 291 9 274 4.66e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31887.t1 AT1G49475 32.479 117 72 3 9 123 34 145 5.10e-11 62.0
MS.gene31887.t1 AT3G18990 22.029 345 190 10 9 284 6 340 8.97e-11 63.5

Find 66 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTGCAGATGACCCTTTA+AGG 0.106528 1.2:-20090721 None:intergenic
AATATCTTAACCTTAAAATA+TGG 0.178478 1.2:-20090048 None:intergenic
TCTATTGTGATGATAATATT+TGG 0.179330 1.2:+20091064 MS.gene31887:CDS
GTGCTCAAAAGGAAATATTT+TGG 0.198072 1.2:+20089926 MS.gene31887:CDS
TGCAGGTTGGCATAAATTTA+AGG 0.202920 1.2:+20091780 MS.gene31887:CDS
TTACGCTCATGGCTATATTT+TGG 0.211055 1.2:+20090463 MS.gene31887:CDS
AGAAATTTGTGGAGAAATAT+TGG 0.241294 1.2:+20089863 MS.gene31887:CDS
ATGTTTGGTTTAAGAGAAAT+TGG 0.245872 1.2:+20089965 MS.gene31887:CDS
TTTGGGAGTCTAAGAATTAC+TGG 0.267570 1.2:-20089901 None:intergenic
TATTTGAATGACAACCTTAA+AGG 0.276541 1.2:+20090707 MS.gene31887:CDS
AGTCTAAGAATTACTGGATT+TGG 0.299817 1.2:-20089895 None:intergenic
ACTATCTTCAAGAACTCTTC+TGG 0.314590 1.2:-20089573 None:intergenic
ATATTTCTCCACAAATTTCT+TGG 0.318034 1.2:-20089860 None:intergenic
ACAAAGGAGGCATAATTAAG+AGG 0.349731 1.2:+20090366 MS.gene31887:CDS
AACTTCACCTCCACTTTCAT+AGG 0.353581 1.2:-20090764 None:intergenic
ATTTGAATGACAACCTTAAA+GGG 0.391511 1.2:+20090708 MS.gene31887:CDS
TATTTCTCCACAAATTTCTT+GGG 0.405795 1.2:-20089859 None:intergenic
TCATCTGCAAGCATTAGATT+TGG 0.416468 1.2:+20090731 MS.gene31887:CDS
AAATTCGTGCAGTTCACAAA+TGG 0.417597 1.2:+20091697 MS.gene31887:CDS
GAAGATTGCGGATTGAAGAT+TGG 0.417689 1.2:+20091802 MS.gene31887:CDS
TTTGCAAAGTCTCTAAAAGA+TGG 0.419454 1.2:+20089994 MS.gene31887:CDS
GACAATTCAAGTTCAAAACT+TGG 0.430631 1.2:-20090434 None:intergenic
AATTCGTGCAGTTCACAAAT+GGG 0.433283 1.2:+20091698 MS.gene31887:CDS
ATATCTTAACCTTAAAATAT+GGG 0.446492 1.2:-20090047 None:intergenic
GATTGGAGATACTTGCAAAC+TGG 0.449776 1.2:+20091819 MS.gene31887:CDS
AGGAGCGTGAAGGTGATGTT+TGG 0.450557 1.2:+20089950 MS.gene31887:CDS
GAACAATGACAAGGTTATGA+AGG 0.451012 1.2:+20091036 MS.gene31887:intron
ACTCCCAAATGGTGCTCAAA+AGG 0.455326 1.2:+20089915 MS.gene31887:CDS
GAGGGTTCCCAAGAAATTTG+TGG 0.458170 1.2:+20089852 MS.gene31887:intron
ACACGAATCTCGATTGTGTT+CGG 0.462954 1.2:-20091529 None:intergenic
TTTGGCTTGGGTGATAGTTA+TGG 0.473644 1.2:-20090915 None:intergenic
ATGAGAATGAGAGAACTTGT+AGG 0.473892 1.2:+20091752 MS.gene31887:CDS
TGTGTTTCAGCAGACTTAGA+AGG 0.481816 1.2:+20091490 MS.gene31887:intron
TGTTTGGTTTAAGAGAAATT+GGG 0.491470 1.2:+20089966 MS.gene31887:CDS
AGTACATACTCGAGAGATCA+TGG 0.493016 1.2:-20091122 None:intergenic
GATATTTGGTCACAATACAT+TGG 0.502848 1.2:+20090065 MS.gene31887:CDS
AGAACTTGTAGGTTCTATGC+AGG 0.508431 1.2:+20091763 MS.gene31887:CDS
CATAAATTTAAGGAAGATTG+CGG 0.529511 1.2:+20091790 MS.gene31887:CDS
GAGGCATTGAAGGAAGTTCA+AGG 0.529967 1.2:+20091094 MS.gene31887:CDS
CTTGTAGGTTCTATGCAGGT+TGG 0.536785 1.2:+20091767 MS.gene31887:CDS
TTCATAGATGAAAGTTGTGA+AGG 0.538273 1.2:+20090111 MS.gene31887:CDS
CAAAGGAGGCATAATTAAGA+GGG 0.540734 1.2:+20090367 MS.gene31887:CDS
ATAGTTATGGTGAATGAAAG+TGG 0.542900 1.2:-20090902 None:intergenic
GTAATTCTTAGACTCCCAAA+TGG 0.561023 1.2:+20089904 MS.gene31887:CDS
AGAACATGCATTGTGACCTC+TGG 0.567004 1.2:+20090806 MS.gene31887:CDS
GATGGCAATGTTAATAGTGC+TGG 0.575875 1.2:+20090168 MS.gene31887:CDS
CTTAGAAGGTGGTAATGTGA+TGG 0.576917 1.2:+20091504 MS.gene31887:CDS
TTGTCACAATCTTACGCTCA+TGG 0.577647 1.2:+20090452 MS.gene31887:CDS
AACTTTGCAGGTAAGAACAA+AGG 0.579693 1.2:+20090350 MS.gene31887:intron
GGCAAATGGCTTCCAACCAG+AGG 0.580163 1.2:-20090822 None:intergenic
TATGCTCTTGAAAAGTCACT+TGG 0.596669 1.2:-20090686 None:intergenic
AAGAGACATAAAGAGTGTCA+TGG 0.604494 1.2:+20091673 MS.gene31887:CDS
TGAGAACATGCCTATGAAAG+TGG 0.608998 1.2:+20090754 MS.gene31887:CDS
TTCGTGCAGTTCACAAATGG+GGG 0.622353 1.2:+20091700 MS.gene31887:CDS
ATTCGTGCAGTTCACAAATG+GGG 0.622898 1.2:+20091699 MS.gene31887:CDS
GTTTCAGCAGACTTAGAAGG+TGG 0.625758 1.2:+20091493 MS.gene31887:intron
ATAGTGCTGGCACATCTCAA+AGG 0.625943 1.2:+20090181 MS.gene31887:CDS
CATGCATTGTGACCTCTGGT+TGG 0.634224 1.2:+20090810 MS.gene31887:CDS
CATAAGTAATCCTACCGGGT+AGG 0.638502 1.2:-20091560 None:intergenic
ATAACTATCACCCAAGCCAA+AGG 0.651162 1.2:+20090917 MS.gene31887:CDS
GCAGAACAAACAACTAGTGG+TGG 0.662011 1.2:-20091894 None:intergenic
TCGTGTGAACTCTACCTACC+CGG 0.663506 1.2:+20091546 MS.gene31887:CDS
CAAAATCATGAACTACACAA+TGG 0.670560 1.2:+20089597 MS.gene31887:CDS
GAAGTTGTTGAACTGAGTGA+TGG 0.670925 1.2:+20090150 MS.gene31887:CDS
TTTGCAGGTAAGAACAAAGG+AGG 0.676867 1.2:+20090353 MS.gene31887:intron
GAACATGCCTATGAAAGTGG+AGG 0.736568 1.2:+20090757 MS.gene31887:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAATTATTTAATATTTCA+AGG + chr1.2:20091339-20091358 MS.gene31887:intron 10.0%
!! CAAAATAAAATAAAATTACA+AGG - chr1.2:20090286-20090305 None:intergenic 10.0%
!!! AAATAATTTGTAATATATGA+GGG - chr1.2:20091330-20091349 None:intergenic 10.0%
!!! TAAATAATTTGTAATATATG+AGG - chr1.2:20091331-20091350 None:intergenic 10.0%
!!! TGTAATTTTATTTTATTTTG+AGG + chr1.2:20090286-20090305 MS.gene31887:intron 10.0%
!!! TGTTCTAAATTATTATTTAT+TGG + chr1.2:20090544-20090563 MS.gene31887:intron 10.0%
!! AAAAAATATAACTTACAAGT+TGG + chr1.2:20090845-20090864 MS.gene31887:CDS 15.0%
!! AATATCTTAACCTTAAAATA+TGG - chr1.2:20090051-20090070 None:intergenic 15.0%
!! ATAAGTATAATTAATGCAAA+GGG - chr1.2:20089810-20089829 None:intergenic 15.0%
!! ATATCTTAACCTTAAAATAT+GGG - chr1.2:20090050-20090069 None:intergenic 15.0%
!! GTTATTTAATTATAGTTGAA+AGG - chr1.2:20089731-20089750 None:intergenic 15.0%
!!! AACTTGTAAGTTATATTTTT+TGG - chr1.2:20090846-20090865 None:intergenic 15.0%
!!! ATAAAATTTAAAACAGAACT+TGG - chr1.2:20091270-20091289 None:intergenic 15.0%
!!! ATTAATAACAAAAGTATAGT+TGG - chr1.2:20089757-20089776 None:intergenic 15.0%
!!! CTTGAACTAATATTTTTAAT+TGG - chr1.2:20091367-20091386 None:intergenic 15.0%
!!! CTTTTCAAAAAATTATAACT+AGG + chr1.2:20091202-20091221 MS.gene31887:intron 15.0%
!!! CTTTTTTAAATAAAGTATGA+AGG - chr1.2:20090948-20090967 None:intergenic 15.0%
!!! GTTTAAATTTTTTAGAGAAT+AGG + chr1.2:20091146-20091165 MS.gene31887:intron 15.0%
!!! TAAGTATAATGTTTTATAGT+AGG - chr1.2:20090493-20090512 None:intergenic 15.0%
!!! TATTTTAAGGTTAAGATATT+TGG + chr1.2:20090051-20090070 MS.gene31887:CDS 15.0%
!!! TTCATCTATGAATTTTATAT+TGG - chr1.2:20090103-20090122 None:intergenic 15.0%
!! CAATTGATATTAAGCAAATT+TGG - chr1.2:20090998-20091017 None:intergenic 20.0%
!! GATAAGTATAATTAATGCAA+AGG - chr1.2:20089811-20089830 None:intergenic 20.0%
!! GATAATATTTGGAAAAAAAG+AGG + chr1.2:20091075-20091094 MS.gene31887:CDS 20.0%
!! TCTATTGTGATGATAATATT+TGG + chr1.2:20091064-20091083 MS.gene31887:CDS 20.0%
!!! AACAAAGTTACTAGTAATTT+TGG + chr1.2:20090618-20090637 MS.gene31887:intron 20.0%
!!! AAGTTATATTTTTTGGCAAA+TGG - chr1.2:20090839-20090858 None:intergenic 20.0%
!!! ATCTATTTTAGCCATTTATA+AGG - chr1.2:20090319-20090338 None:intergenic 20.0%
!!! GCTTTAGTTTTCAAATATTT+AGG + chr1.2:20090021-20090040 MS.gene31887:CDS 20.0%
!!! TTAGTTTTCAAATATTTAGG+TGG + chr1.2:20090024-20090043 MS.gene31887:CDS 20.0%
!!! TTTTTGTTTTTTAACTTTGC+AGG + chr1.2:20090338-20090357 MS.gene31887:intron 20.0%
! AAATGATTATCTGTTTCAGA+GGG + chr1.2:20089834-20089853 MS.gene31887:intron 25.0%
! AGAAATTTGTGGAGAAATAT+TGG + chr1.2:20089863-20089882 MS.gene31887:CDS 25.0%
! AGGATTACTTATGTTAAATG+TGG + chr1.2:20091570-20091589 MS.gene31887:intron 25.0%
! ATATTTCTCCACAAATTTCT+TGG - chr1.2:20089863-20089882 None:intergenic 25.0%
! ATTAATCAGCAAAAAATCTC+TGG + chr1.2:20090225-20090244 MS.gene31887:CDS 25.0%
! ATTTGAATGACAACCTTAAA+GGG + chr1.2:20090708-20090727 MS.gene31887:CDS 25.0%
! CATAAATTTAAGGAAGATTG+CGG + chr1.2:20091790-20091809 MS.gene31887:CDS 25.0%
! CTGAAACAGATAATCATTTA+TGG - chr1.2:20089833-20089852 None:intergenic 25.0%
! TAAACCTTGAATTGAAATAG+AGG + chr1.2:20090660-20090679 MS.gene31887:intron 25.0%
! TAAATGATTATCTGTTTCAG+AGG + chr1.2:20089833-20089852 MS.gene31887:intron 25.0%
! TATTTCTCCACAAATTTCTT+GGG - chr1.2:20089862-20089881 None:intergenic 25.0%
! TATTTGAATGACAACCTTAA+AGG + chr1.2:20090707-20090726 MS.gene31887:CDS 25.0%
! TTTAACATAAGTAATCCTAC+CGG - chr1.2:20091568-20091587 None:intergenic 25.0%
!! ATGTTTGGTTTAAGAGAAAT+TGG + chr1.2:20089965-20089984 MS.gene31887:CDS 25.0%
!! TAACTAGGTTTTCTTACTTT+AGG + chr1.2:20091217-20091236 MS.gene31887:intron 25.0%
!! TCATAATATTGCACTTTTAC+AGG - chr1.2:20091736-20091755 None:intergenic 25.0%
!! TGCTCAAAAGGAAATATTTT+GGG + chr1.2:20089927-20089946 MS.gene31887:CDS 25.0%
!! TGTTTGGTTTAAGAGAAATT+GGG + chr1.2:20089966-20089985 MS.gene31887:CDS 25.0%
AAGTATGAAGGAAAAACCTT+TGG - chr1.2:20090936-20090955 None:intergenic 30.0%
AATTCCTTTGAACAATGACA+AGG + chr1.2:20091027-20091046 MS.gene31887:intron 30.0%
AGTCTAAGAATTACTGGATT+TGG - chr1.2:20089898-20089917 None:intergenic 30.0%
ATAACCTTGTCATTGTTCAA+AGG - chr1.2:20091034-20091053 None:intergenic 30.0%
ATAGTTATGGTGAATGAAAG+TGG - chr1.2:20090905-20090924 None:intergenic 30.0%
ATTTGTAATATATGAGGGAG+AGG - chr1.2:20091325-20091344 None:intergenic 30.0%
CAAAATCATGAACTACACAA+TGG + chr1.2:20089597-20089616 MS.gene31887:CDS 30.0%
GATATTTGGTCACAATACAT+TGG + chr1.2:20090065-20090084 MS.gene31887:CDS 30.0%
GTATCCTCTATTTCAATTCA+AGG - chr1.2:20090667-20090686 None:intergenic 30.0%
TTAACATAAGTAATCCTACC+GGG - chr1.2:20091567-20091586 None:intergenic 30.0%
TTCATAGATGAAAGTTGTGA+AGG + chr1.2:20090111-20090130 MS.gene31887:CDS 30.0%
TTGTCATTGTTCAAAGGAAT+TGG - chr1.2:20091028-20091047 None:intergenic 30.0%
! GACAATTCAAGTTCAAAACT+TGG - chr1.2:20090437-20090456 None:intergenic 30.0%
! GAGGTATTCTACCTTATAAA+TGG + chr1.2:20090305-20090324 MS.gene31887:intron 30.0%
! GTGCTCAAAAGGAAATATTT+TGG + chr1.2:20089926-20089945 MS.gene31887:CDS 30.0%
! TTTGCAAAGTCTCTAAAAGA+TGG + chr1.2:20089994-20090013 MS.gene31887:CDS 30.0%
!! TCAAAAGGAAATATTTTGGG+AGG + chr1.2:20089930-20089949 MS.gene31887:CDS 30.0%
AAATTCGTGCAGTTCACAAA+TGG + chr1.2:20091697-20091716 MS.gene31887:CDS 35.0%
AACTTTGCAGGTAAGAACAA+AGG + chr1.2:20090350-20090369 MS.gene31887:intron 35.0%
AATTCGTGCAGTTCACAAAT+GGG + chr1.2:20091698-20091717 MS.gene31887:CDS 35.0%
ACATCTCAAAGGAGAAAAAG+TGG + chr1.2:20090192-20090211 MS.gene31887:CDS 35.0%
ACTATCTTCAAGAACTCTTC+TGG - chr1.2:20089576-20089595 None:intergenic 35.0%
ATGAGAATGAGAGAACTTGT+AGG + chr1.2:20091752-20091771 MS.gene31887:CDS 35.0%
GAACAATGACAAGGTTATGA+AGG + chr1.2:20091036-20091055 MS.gene31887:intron 35.0%
GTAATTCTTAGACTCCCAAA+TGG + chr1.2:20089904-20089923 MS.gene31887:CDS 35.0%
TATGCTCTTGAAAAGTCACT+TGG - chr1.2:20090689-20090708 None:intergenic 35.0%
TCATCTGCAAGCATTAGATT+TGG + chr1.2:20090731-20090750 MS.gene31887:CDS 35.0%
TTTGGGAGTCTAAGAATTAC+TGG - chr1.2:20089904-20089923 None:intergenic 35.0%
! ACAAAGGAGGCATAATTAAG+AGG + chr1.2:20090366-20090385 MS.gene31887:CDS 35.0%
! ATTTCCTTTTGAGCACCATT+TGG - chr1.2:20089922-20089941 None:intergenic 35.0%
! CAAAGGAGGCATAATTAAGA+GGG + chr1.2:20090367-20090386 MS.gene31887:CDS 35.0%
! TGCAGGTTGGCATAAATTTA+AGG + chr1.2:20091780-20091799 MS.gene31887:CDS 35.0%
! TTACGCTCATGGCTATATTT+TGG + chr1.2:20090463-20090482 MS.gene31887:CDS 35.0%
! TTTAGGTGGCCCATATTTTA+AGG + chr1.2:20090038-20090057 MS.gene31887:CDS 35.0%
! TTTCCTTTTGAGCACCATTT+GGG - chr1.2:20089921-20089940 None:intergenic 35.0%
!! AAGAGACATAAAGAGTGTCA+TGG + chr1.2:20091673-20091692 MS.gene31887:CDS 35.0%
!! TGGAAAAAAAGAGGCATTGA+AGG + chr1.2:20091084-20091103 MS.gene31887:CDS 35.0%
AACTTCACCTCCACTTTCAT+AGG - chr1.2:20090767-20090786 None:intergenic 40.0%
ACACGAATCTCGATTGTGTT+CGG - chr1.2:20091532-20091551 None:intergenic 40.0%
AGAACTTGTAGGTTCTATGC+AGG + chr1.2:20091763-20091782 MS.gene31887:CDS 40.0%
AGTACATACTCGAGAGATCA+TGG - chr1.2:20091125-20091144 None:intergenic 40.0%
ATAACTATCACCCAAGCCAA+AGG + chr1.2:20090917-20090936 MS.gene31887:CDS 40.0%
ATTCGTGCAGTTCACAAATG+GGG + chr1.2:20091699-20091718 MS.gene31887:CDS 40.0%
GAAGTTGTTGAACTGAGTGA+TGG + chr1.2:20090150-20090169 MS.gene31887:CDS 40.0%
GATGGCAATGTTAATAGTGC+TGG + chr1.2:20090168-20090187 MS.gene31887:CDS 40.0%
GATTGGAGATACTTGCAAAC+TGG + chr1.2:20091819-20091838 MS.gene31887:CDS 40.0%
TCACAAATGGGGGAAAATCA+TGG + chr1.2:20091710-20091729 MS.gene31887:CDS 40.0%
TGAAGGAAAAACCTTTGGCT+TGG - chr1.2:20090931-20090950 None:intergenic 40.0%
TGAGAACATGCCTATGAAAG+TGG + chr1.2:20090754-20090773 MS.gene31887:CDS 40.0%
TGTGTTTCAGCAGACTTAGA+AGG + chr1.2:20091490-20091509 MS.gene31887:intron 40.0%
TTGTCACAATCTTACGCTCA+TGG + chr1.2:20090452-20090471 MS.gene31887:CDS 40.0%
TTTGCAGGTAAGAACAAAGG+AGG + chr1.2:20090353-20090372 MS.gene31887:intron 40.0%
! CTTAGAAGGTGGTAATGTGA+TGG + chr1.2:20091504-20091523 MS.gene31887:CDS 40.0%
! GAAGATTGCGGATTGAAGAT+TGG + chr1.2:20091802-20091821 MS.gene31887:CDS 40.0%
! GAAGGAAAAACCTTTGGCTT+GGG - chr1.2:20090930-20090949 None:intergenic 40.0%
!! TTTGGCTTGGGTGATAGTTA+TGG - chr1.2:20090918-20090937 None:intergenic 40.0%
ACTCCCAAATGGTGCTCAAA+AGG + chr1.2:20089915-20089934 MS.gene31887:CDS 45.0%
AGAACATGCATTGTGACCTC+TGG + chr1.2:20090806-20090825 MS.gene31887:CDS 45.0%
CATAAGTAATCCTACCGGGT+AGG - chr1.2:20091563-20091582 None:intergenic 45.0%
CTTGTAGGTTCTATGCAGGT+TGG + chr1.2:20091767-20091786 MS.gene31887:CDS 45.0%
GAACATGCCTATGAAAGTGG+AGG + chr1.2:20090757-20090776 MS.gene31887:CDS 45.0%
GAGGGTTCCCAAGAAATTTG+TGG + chr1.2:20089852-20089871 MS.gene31887:intron 45.0%
GTTTCAGCAGACTTAGAAGG+TGG + chr1.2:20091493-20091512 MS.gene31887:intron 45.0%
TGCTTGCAGATGACCCTTTA+AGG - chr1.2:20090724-20090743 None:intergenic 45.0%
TTCGTGCAGTTCACAAATGG+GGG + chr1.2:20091700-20091719 MS.gene31887:CDS 45.0%
!! ATAGTGCTGGCACATCTCAA+AGG + chr1.2:20090181-20090200 MS.gene31887:CDS 45.0%
!! ATATTTTGGGAGGAGCGTGA+AGG + chr1.2:20089940-20089959 MS.gene31887:CDS 45.0%
!! GAGGCATTGAAGGAAGTTCA+AGG + chr1.2:20091094-20091113 MS.gene31887:CDS 45.0%
CATGCATTGTGACCTCTGGT+TGG + chr1.2:20090810-20090829 MS.gene31887:CDS 50.0%
TCGTGTGAACTCTACCTACC+CGG + chr1.2:20091546-20091565 MS.gene31887:CDS 50.0%
! AGGAGCGTGAAGGTGATGTT+TGG + chr1.2:20089950-20089969 MS.gene31887:CDS 50.0%
GGCAAATGGCTTCCAACCAG+AGG - chr1.2:20090825-20090844 None:intergenic 55.0%
GTGAACTCTACCTACCCGGT+AGG + chr1.2:20091550-20091569 MS.gene31887:intron 55.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 20089558 20091903 20089558 ID=MS.gene31887
chr1.2 mRNA 20089558 20091903 20089558 ID=MS.gene31887.t1;Parent=MS.gene31887
chr1.2 exon 20089558 20089626 20089558 ID=MS.gene31887.t1.exon1;Parent=MS.gene31887.t1
chr1.2 CDS 20089558 20089626 20089558 ID=cds.MS.gene31887.t1;Parent=MS.gene31887.t1
chr1.2 exon 20089853 20090246 20089853 ID=MS.gene31887.t1.exon2;Parent=MS.gene31887.t1
chr1.2 CDS 20089853 20090246 20089853 ID=cds.MS.gene31887.t1;Parent=MS.gene31887.t1
chr1.2 exon 20090360 20090484 20090360 ID=MS.gene31887.t1.exon3;Parent=MS.gene31887.t1
chr1.2 CDS 20090360 20090484 20090360 ID=cds.MS.gene31887.t1;Parent=MS.gene31887.t1
chr1.2 exon 20090680 20090938 20090680 ID=MS.gene31887.t1.exon4;Parent=MS.gene31887.t1
chr1.2 CDS 20090680 20090938 20090680 ID=cds.MS.gene31887.t1;Parent=MS.gene31887.t1
chr1.2 exon 20091049 20091135 20091049 ID=MS.gene31887.t1.exon5;Parent=MS.gene31887.t1
chr1.2 CDS 20091049 20091135 20091049 ID=cds.MS.gene31887.t1;Parent=MS.gene31887.t1
chr1.2 exon 20091503 20091567 20091503 ID=MS.gene31887.t1.exon6;Parent=MS.gene31887.t1
chr1.2 CDS 20091503 20091567 20091503 ID=cds.MS.gene31887.t1;Parent=MS.gene31887.t1
chr1.2 exon 20091652 20091903 20091652 ID=MS.gene31887.t1.exon7;Parent=MS.gene31887.t1
chr1.2 CDS 20091652 20091903 20091652 ID=cds.MS.gene31887.t1;Parent=MS.gene31887.t1
Gene Sequence

>MS.gene31887

ATGTCAATACATCATCCAGAAGAGTTCTTGAAGATAGTTCAAAATCATGAACTACACAATGGAGAGCTTGTAAGCATATTACAAAATTACATTCGATAGAAATTGCATGTTGTGTATTTTGTTGCATGTATACTTAATTTATAAATTAAGTATACATGCAACTAATTATTCCTTTCAACTATAATTAAATAACAATCCAACTATACTTTTGTTATTAATCTTTATAAATTGTCTATAAAGTTTCTTCTTCCCTTTGCATTAATTATACTTATCCATAAATGATTATCTGTTTCAGAGGGTTCCCAAGAAATTTGTGGAGAAATATTGGAAAAAAATACCAAATCCAGTAATTCTTAGACTCCCAAATGGTGCTCAAAAGGAAATATTTTGGGAGGAGCGTGAAGGTGATGTTTGGTTTAAGAGAAATTGGGAAAATTTTGCAAAGTCTCTAAAAGATGGATATGCTTTAGTTTTCAAATATTTAGGTGGCCCATATTTTAAGGTTAAGATATTTGGTCACAATACATTGGAAAAAGACTATTCCAATATAAAATTCATAGATGAAAGTTGTGAAGGTAGAGAAGAAGTTCAAGAAGTTGTTGAACTGAGTGATGGCAATGTTAATAGTGCTGGCACATCTCAAAGGAGAAAAAGTGGCAAGAGAAAAATTAATCAGCAAAAAATCTCTGGTGTGTTCATCTGTTTTTTTTTTAGTTGTTATTCTACCTTGTAATTTTATTTTATTTTGAGGTATTCTACCTTATAAATGGCTAAAATAGATTTTTGTTTTTTAACTTTGCAGGTAAGAACAAAGGAGGCATAATTAAGAGGGCTAAAAAATGCTCAACAATTAGTGAGAGAGACAAGAATGAGAATCCAAGTTTTGAACTTGAATTGTCACAATCTTACGCTCATGGCTATATTTTGGTAAGCCTACTATAAAACATTATACTTATGTTCAAATATCTTTTTTTTGAAGAAACTTATGTTCTAAATTATTATTTATTGGCTATTTCACATAAATTATAAGTTACTAGTAATTTTTGCTCAAAAAAAAAAAAACAAAGTTACTAGTAATTTTGGCTATAATTAATATCTCTAATAAACCTTGAATTGAAATAGAGGATACCAAGTGACTTTTCAAGAGCATATTTGAATGACAACCTTAAAGGGTCATCTGCAAGCATTAGATTTGGTGAGAACATGCCTATGAAAGTGGAGGTGAAGTTTCAAGATATCAAGAATAATAGAACATGCATTGTGACCTCTGGTTGGAAGCCATTTGCCAAAAAATATAACTTACAAGTTGGCAATGTATGTAAATTTGTGATGACTCAACTTCAACCACTTTCATTCACCATAACTATCACCCAAGCCAAAGGTTTTTCCTTCATACTTTATTTAAAAAAGTTGTTTTTTTCATTGACATGTGATTCACCAAATTTGCTTAATATCAATTGATTTTCTCCAATTCCTTTGAACAATGACAAGGTTATGAAGGAATAATCTATTGTGATGATAATATTTGGAAAAAAAGAGGCATTGAAGGAAGTTCAAGGAGCTTCCATGATCTCTCGAGTATGTACTTGTTTAAATTTTTTAGAGAATAGGTTTTTGAATTAAATGTTAATTTAGTATCTAAAACTTTTCAAAAAATTATAACTAGGTTTTCTTACTTTAGGCTTCTTACATTTTTAAAATAATTTATACCAAGTTCTGTTTTAAATTTTATAATAATTTATGATTATGTCTCAATATTTTTTACCTCTCCCTCATATATTACAAATTATTTAATATTTCAAGGATCCAATTAAAAATATTAGTTCAAGAATCTAATATTTAATATTTTTTAATAGTGTCAAAGAGATGAAATTTTTTTATCAATATTTATTTCGACAATAATCATATTATAAAAAGTATATATTTTAATTTTGTGTTTCAGCAGACTTAGAAGGTGGTAATGTGATGGAACCGAACACAATCGAGATTCGTGTGAACTCTACCTACCCGGTAGGATTACTTATGTTAAATGTGGTTACTATATAGATATATGTTAGAAATGTGTATAAATAATTTTTTTTGTTGTATTTGCAGTACATTAAACATCAGTTTCTTAAGAGACATAAAGAGTGTCATGGAAAATTCGTGCAGTTCACAAATGGGGGAAAATCATGGCCTGTAAAAGTGCAATATTATGAGAATGAGAGAACTTGTAGGTTCTATGCAGGTTGGCATAAATTTAAGGAAGATTGCGGATTGAAGATTGGAGATACTTGCAAACTGGAGTTGATTGATGAAAAAATGTTTGTGTTTAAAGTTTCAATTGAAAGAATGCACCACCACTAG
Protein sequence

>MS.gene31887.t1

MSIHHPEEFLKIVQNHELHNGELRVPKKFVEKYWKKIPNPVILRLPNGAQKEIFWEEREGDVWFKRNWENFAKSLKDGYALVFKYLGGPYFKVKIFGHNTLEKDYSNIKFIDESCEGREEVQEVVELSDGNVNSAGTSQRRKSGKRKINQQKISGKNKGGIIKRAKKCSTISERDKNENPSFELELSQSYAHGYILRIPSDFSRAYLNDNLKGSSASIRFGENMPMKVEVKFQDIKNNRTCIVTSGWKPFAKKYNLQVGNVCKFVMTQLQPLSFTITITQAKGYEGIIYCDDNIWKKRGIEGSSRSFHDLSNLEGGNVMEPNTIEIRVNSTYPYIKHQFLKRHKECHGKFVQFTNGGKSWPVKVQYYENERTCRFYAGWHKFKEDCGLKIGDTCKLELIDEKMFVFKVSIERMHHH