AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31896

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31896.t1 MTR_6g061070 69.165 467 101 4 1 426 2 466 0.0 638
MS.gene31896.t1 MTR_6g061070 79.167 96 19 1 538 633 373 467 8.37e-44 164
MS.gene31896.t1 MTR_6g061070 37.850 214 82 6 427 633 149 318 2.78e-24 107
MS.gene31896.t1 MTR_1g035480 68.783 189 33 2 1 183 1 169 1.27e-82 259
MS.gene31896.t1 MTR_1g033740 67.914 187 38 2 2 183 7 176 3.77e-82 258
MS.gene31896.t1 MTR_1g035500 62.234 188 48 2 2 183 10 180 5.39e-76 242
MS.gene31896.t1 MTR_1g035520 48.220 309 125 8 32 317 87 383 8.00e-76 248
MS.gene31896.t1 MTR_1g035520 51.643 213 59 6 425 633 208 380 8.99e-53 187
MS.gene31896.t1 MTR_1g035520 64.567 127 44 1 301 426 253 379 2.81e-46 169
MS.gene31896.t1 MTR_1g035570 36.543 405 223 12 26 425 14 389 6.97e-65 220
MS.gene31896.t1 MTR_1g035570 42.529 87 42 3 547 631 309 389 6.96e-12 68.2
MS.gene31896.t1 MTR_1g035620 34.793 434 222 12 17 426 9 405 2.67e-61 211
MS.gene31896.t1 MTR_1g035640 40.193 311 148 8 26 330 14 292 1.86e-55 196
MS.gene31896.t1 MTR_1g035470 65.278 144 24 2 32 170 1 123 2.91e-54 182
MS.gene31896.t1 MTR_1g035510 58.974 156 43 2 32 183 1 139 1.58e-53 183
MS.gene31896.t1 MTR_1g050845 33.249 394 193 11 17 387 9 355 1.93e-43 168
MS.gene31896.t1 MTR_1g035650 39.269 219 103 6 17 232 9 200 2.10e-36 136
MS.gene31896.t1 MTR_5g044670 29.096 354 202 11 2 340 5 324 3.79e-36 139
MS.gene31896.t1 MTR_1g035490 37.872 235 113 9 216 425 97 323 1.75e-35 137
MS.gene31896.t1 MTR_1g035490 41.758 91 47 4 544 633 240 325 1.87e-13 72.4
MS.gene31896.t1 MTR_1g035540 83.784 74 11 1 283 356 31 103 8.80e-35 129
MS.gene31896.t1 MTR_3g098790 31.173 324 178 14 12 320 8 301 1.45e-32 129
MS.gene31896.t1 MTR_7g050720 32.188 320 181 13 16 317 9 310 1.05e-30 123
MS.gene31896.t1 MTR_7g050560 30.476 315 185 8 11 320 7 292 9.98e-30 120
MS.gene31896.t1 MTR_7g050580 29.022 317 187 10 11 320 7 292 1.38e-29 120
MS.gene31896.t1 MTR_8g103940 24.524 473 275 15 15 425 37 489 1.13e-28 120
MS.gene31896.t1 MTR_7g050710 28.308 325 198 8 10 320 6 309 4.24e-28 115
MS.gene31896.t1 MTR_1g108780 28.344 314 195 11 33 334 13 308 5.00e-28 118
MS.gene31896.t1 MTR_4g119990 28.829 333 205 14 12 330 10 324 1.68e-27 115
MS.gene31896.t1 MTR_7g050590 29.492 295 189 7 32 320 1 282 9.41e-27 111
MS.gene31896.t1 MTR_6g043890 30.363 303 184 12 14 308 12 295 1.45e-26 111
MS.gene31896.t1 MTR_3g061350 28.571 315 167 12 17 316 12 283 2.09e-24 104
MS.gene31896.t1 MTR_3g061370 26.730 318 183 10 10 316 2 280 2.25e-23 100
MS.gene31896.t1 MTR_1g035460 27.124 306 195 10 32 323 1 292 4.20e-23 102
MS.gene31896.t1 MTR_3g061320 26.899 316 188 13 7 317 2 279 1.11e-22 99.0
MS.gene31896.t1 MTR_3g061310 24.516 310 191 9 15 316 10 284 1.24e-22 99.0
MS.gene31896.t1 MTR_3g061340 26.646 319 180 13 7 317 2 274 1.67e-21 95.5
MS.gene31896.t1 MTR_3g061290 34.507 142 88 3 15 153 10 149 1.68e-18 84.7
MS.gene31896.t1 MTR_1g035440 43.689 103 54 2 14 112 12 114 1.99e-17 82.8
MS.gene31896.t1 MTR_3g005460 23.030 330 182 11 1 317 246 516 1.01e-16 84.3
MS.gene31896.t1 MTR_3g061330 30.952 168 102 4 7 162 2 167 1.66e-16 80.1
MS.gene31896.t1 MTR_1g021330 25.378 331 198 13 15 304 24 346 4.38e-15 78.2
MS.gene31896.t1 MTR_3g061220 36.207 116 61 4 15 129 10 113 7.26e-15 71.6
MS.gene31896.t1 MTR_3g005420 26.129 310 165 12 16 320 288 538 7.70e-15 78.2
MS.gene31896.t1 MTR_3g005490 22.430 321 168 9 9 320 13 261 1.36e-14 74.7
MS.gene31896.t1 MTR_7g050640 37.000 100 60 2 11 107 7 106 2.22e-14 70.5
MS.gene31896.t1 MTR_1g021440 23.193 332 206 11 15 304 21 345 4.05e-14 75.1
MS.gene31896.t1 MTR_3g005495 38.000 100 59 2 16 112 242 341 1.61e-13 73.9
MS.gene31896.t1 MTR_3g005480 33.962 106 67 2 10 112 14 119 2.32e-13 71.2
MS.gene31896.t1 MTR_5g070440 32.381 105 68 2 11 112 15 119 3.19e-12 68.2
MS.gene31896.t1 MTR_1g021400 22.468 316 214 9 15 304 28 338 4.14e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31896.t1 AT3G18990 24.850 334 210 12 17 315 6 333 1.60e-19 90.9
MS.gene31896.t1 AT3G18990 24.850 334 210 12 17 315 6 333 3.63e-19 90.5
MS.gene31896.t1 AT4G33280 24.684 316 205 13 18 317 20 318 3.91e-13 71.6

Find 124 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATAATTTGAGAGTGAAAT+TGG 0.170501 1.1:+19778904 None:intergenic
TTGAAGGGACCGAAAGAATA+AGG 0.255481 1.1:-19777592 MS.gene31896:CDS
CATTCAACTTTGTGAATTGC+AGG 0.285867 1.1:-19782820 MS.gene31896:CDS
GGGCATGGTTCCTTTGTGGC+TGG 0.290615 1.1:+19780485 None:intergenic
CTCGCCAACCCTTATTCTTT+CGG 0.293998 1.1:+19777583 None:intergenic
TATATTGGATGATAGTAGTT+TGG 0.295324 1.1:-19781743 MS.gene31896:CDS
TTGAATTTGTCATGTAAATT+CGG 0.311912 1.1:+19778538 None:intergenic
TTGAATTTGTCATGTAAATT+CGG 0.311912 1.1:+19780243 None:intergenic
TATAATGAGCATCTCGACTA+TGG 0.312686 1.1:-19778305 MS.gene31896:CDS
AAAAGACATGATATATTTAG+TGG 0.333899 1.1:-19778380 MS.gene31896:CDS
TATATTTAGTGGAAATTTAG+TGG 0.337369 1.1:-19780073 MS.gene31896:CDS
GGAAGGTGATAGATTAAAAT+TGG 0.340370 1.1:-19778870 MS.gene31896:intron
AAGAGACATAATATATTTAG+TGG 0.341164 1.1:-19780084 MS.gene31896:CDS
GGTCTGAGTTCAAAATGAAT+TGG 0.350012 1.1:-19781879 MS.gene31896:CDS
ATTCACAAAGTTGAATGGTT+TGG 0.365673 1.1:+19782826 None:intergenic
TACAACGCGGTGACGATGTT+TGG 0.370214 1.1:-19781855 MS.gene31896:CDS
TTATAACCTTCAATGTGATA+TGG 0.376198 1.1:+19781120 None:intergenic
CTCTGGGCATGGTTCCTTTG+TGG 0.384680 1.1:+19780481 None:intergenic
AATCTGACCCTCCTTTGTAT+TGG 0.385935 1.1:+19781776 None:intergenic
CTGCAATTCACAAAGTTGAA+TGG 0.392583 1.1:+19782821 None:intergenic
GACGATGCCAGAAGAAGATA+TGG 0.392753 1.1:-19778726 MS.gene31896:CDS
TGATATATTTAGTGGAAATT+CGG 0.394530 1.1:-19778372 MS.gene31896:CDS
ACATATTCCATATCTTCTTC+TGG 0.395565 1.1:+19778719 None:intergenic
GGCATGGTTCCTTTGTGGCT+GGG 0.402651 1.1:+19780486 None:intergenic
ACGATGTTTGGCTTCAGAAC+TGG 0.404512 1.1:-19781843 MS.gene31896:CDS
CATTGAAGGTTATAATAGAT+TGG 0.414338 1.1:-19781112 MS.gene31896:intron
CGTGCAAAATCATGTATTCA+AGG 0.415158 1.1:-19779905 MS.gene31896:intron
GAAATACCTTGAAACTGCTC+TGG 0.423422 1.1:+19780464 None:intergenic
TATTCTTTCGAAAACCATCT+AGG 0.429204 1.1:+19780722 None:intergenic
AGTGAAATTGGGATTCTCAT+TGG 0.431716 1.1:+19778916 None:intergenic
ATAGTAATTGTGAATGAAAG+TGG 0.438268 1.1:+19780512 None:intergenic
TATGATCAACATCTCGATCA+TGG 0.447909 1.1:-19780009 MS.gene31896:CDS
CTCAAACAAGCAAGTGTCTC+CGG 0.453496 1.1:+19778232 None:intergenic
TTAGAAGTGTTGGTGAGGAC+AGG 0.455257 1.1:-19780667 MS.gene31896:CDS
GTCTGAGTTCAAAATGAATT+GGG 0.455385 1.1:-19781878 MS.gene31896:CDS
GAATTTACATGACAAATTCA+AGG 0.456040 1.1:-19778536 MS.gene31896:CDS
GAATTTACATGACAAATTCA+AGG 0.456040 1.1:-19780241 MS.gene31896:CDS
TTATCGCCATATCACATTGA+AGG 0.463256 1.1:-19781126 MS.gene31896:CDS
CTAATAGAAACTGTGGAGGC+CGG 0.465574 1.1:-19781245 MS.gene31896:CDS
GATAATTTGAGAGTGAAATT+GGG 0.465805 1.1:+19778905 None:intergenic
AGAGATCGCAAAGTGAAGAT+TGG 0.467048 1.1:-19779955 MS.gene31896:CDS
TGAAGGGACCGAAAGAATAA+GGG 0.470546 1.1:-19777591 MS.gene31896:CDS
AAGGAACATGACTTGAAAGT+TGG 0.470859 1.1:-19780569 MS.gene31896:CDS
TGTCTCTCTACGAATTTCCT+TGG 0.471061 1.1:+19781946 None:intergenic
GAGCTTGGAAGGTGAATATG+AGG 0.471494 1.1:-19777556 MS.gene31896:CDS
TGCGCAAAATCATGTGTTCA+AGG 0.477040 1.1:-19778201 MS.gene31896:intron
TAATAGAAACTGTGGAGGCC+GGG 0.483673 1.1:-19781244 MS.gene31896:CDS
TCAATGTCAAGTGTTCACTA+TGG 0.491973 1.1:-19782882 MS.gene31896:CDS
TGTCTCTTCAACAGCTCACT+TGG 0.493789 1.1:+19780099 None:intergenic
TGAAACAGATAATACCTAGA+TGG 0.494737 1.1:-19780736 MS.gene31896:intron
AGCAGTGCTCTCATTTGTGT+TGG 0.497625 1.1:+19779257 None:intergenic
GAATACTCGAACGAGTTTGA+AGG 0.498358 1.1:-19777608 MS.gene31896:CDS
GTGGAGTTGAAAGCAGAAGA+AGG 0.502821 1.1:-19780054 MS.gene31896:CDS
AGAGGAAGAAACATGGTTTG+TGG 0.504030 1.1:-19778336 MS.gene31896:CDS
TCACAAATTATCATCCCAAT+GGG 0.508213 1.1:-19781170 MS.gene31896:CDS
TTGCCAATGTTTGTCCCTTG+AGG 0.510253 1.1:+19781559 None:intergenic
TTCACAAATTATCATCCCAA+TGG 0.514529 1.1:-19781171 MS.gene31896:CDS
ACATCGCTTAGACTTCCAAA+TGG 0.515725 1.1:-19781901 MS.gene31896:CDS
CCATGCCCAGAGCAGTTTCA+AGG 0.516067 1.1:-19780470 MS.gene31896:intron
CAATGATGAACAAGAGGCTA+AGG 0.528867 1.1:-19781695 MS.gene31896:CDS
GGAAATTCGTAGAGAGACAT+TGG 0.530097 1.1:-19781942 MS.gene31896:CDS
TTTGGAAGTCTAAGCGATGT+TGG 0.531226 1.1:+19781904 None:intergenic
TATTCTTTCGTAAACAGAGT+TGG 0.531443 1.1:+19777626 None:intergenic
TTTGGCTTCAGAACTGGAAG+AGG 0.532764 1.1:-19781837 MS.gene31896:CDS
CAAATTATCGCGATCCGATG+TGG 0.533971 1.1:-19778891 MS.gene31896:CDS
CCTTGAAACTGCTCTGGGCA+TGG 0.538312 1.1:+19780470 None:intergenic
GAGAGCACTGCTACACCTCA+AGG 0.538359 1.1:-19779246 MS.gene31896:CDS
ACACCTCAAGGGACAAGCAT+TGG 0.540284 1.1:-19779234 MS.gene31896:CDS
GATCATGGGTGGTTCACTAA+AGG 0.540814 1.1:-19779994 MS.gene31896:CDS
TGGACGTGGAAGTGAAGCTA+AGG 0.540987 1.1:-19782862 MS.gene31896:CDS
AGAAGAAGGAACATGGTTTG+TGG 0.547977 1.1:-19780040 MS.gene31896:CDS
ATTTCTTAGCTTTCTTACCC+CGG 0.551754 1.1:+19781226 None:intergenic
AATAGAAACTGTGGAGGCCG+GGG 0.552110 1.1:-19781243 MS.gene31896:CDS
GACTATGGGTGGTTCACTGA+AGG 0.552574 1.1:-19778290 MS.gene31896:CDS
ACTAGTGCTGCTACACCTCA+AGG 0.555707 1.1:-19781574 MS.gene31896:CDS
CATCGCTTAGACTTCCAAAT+GGG 0.555762 1.1:-19781900 MS.gene31896:CDS
TTGCCAATGCTTGTCCCTTG+AGG 0.556750 1.1:+19779231 None:intergenic
ATGATCAACATCTCGATCAT+GGG 0.558223 1.1:-19780008 MS.gene31896:CDS
ATGGGTGGTTCACTGAAGGC+TGG 0.558556 1.1:-19778286 MS.gene31896:CDS
TGTTCTTGCAGATGATTCCA+AGG 0.559130 1.1:-19781963 MS.gene31896:intron
TTCGGTGGAGTTGAAAGTAG+AGG 0.559890 1.1:-19778354 MS.gene31896:CDS
TATATTTAGTGGAAATTCGG+TGG 0.560367 1.1:-19778369 MS.gene31896:CDS
ATAGCTCTGTTAGAATGACT+TGG 0.561542 1.1:+19777731 None:intergenic
TAGAAGTGTTGGTGAGGACA+GGG 0.562489 1.1:-19780666 MS.gene31896:CDS
ATAATGAGCATCTCGACTAT+GGG 0.562604 1.1:-19778304 MS.gene31896:CDS
AGAGATTGCAAAGTAAAGAC+CGG 0.565440 1.1:-19778251 MS.gene31896:CDS
GATAATTTGACAGTGAAACT+AGG 0.566923 1.1:+19781144 None:intergenic
GCAGAGGCTAATAGAATCAG+AGG 0.568365 1.1:-19779013 MS.gene31896:intron
CTCACCAACACTTCTAATTG+TGG 0.571224 1.1:+19780673 None:intergenic
AAGGCCACAATTAGAAGTGT+TGG 0.571434 1.1:-19780677 MS.gene31896:CDS
AATAGAATCAGAGGAGGCAG+TGG 0.572767 1.1:-19779004 MS.gene31896:CDS
GTGAAACTAGGACTCCCATT+GGG 0.573485 1.1:+19781156 None:intergenic
ACACCTCAAGGGACAAACAT+TGG 0.575666 1.1:-19781562 MS.gene31896:CDS
TGGCGAGGATAGAGCTTGGA+AGG 0.576297 1.1:-19777567 MS.gene31896:CDS
GAATGACTTGGATAACAGAA+TGG 0.579429 1.1:+19777743 None:intergenic
TTTGCGCGCTCTCTCAGATG+TGG 0.586381 1.1:-19781814 MS.gene31896:CDS
AGTGAAACTAGGACTCCCAT+TGG 0.586614 1.1:+19781155 None:intergenic
ATGGGTGGTTCACTAAAGGT+TGG 0.588689 1.1:-19779990 MS.gene31896:CDS
AAATACCTTGAAACTGCTCT+GGG 0.589681 1.1:+19780465 None:intergenic
AATACTCGAACGAGTTTGAA+GGG 0.590562 1.1:-19777607 MS.gene31896:CDS
GAGATGCAATGATGAACAAG+AGG 0.593842 1.1:-19781701 MS.gene31896:CDS
TGAAAGTAGAGGAAGAAACA+TGG 0.594057 1.1:-19778343 MS.gene31896:CDS
CACAATTAGAAGTGTTGGTG+AGG 0.602624 1.1:-19780672 MS.gene31896:CDS
CGAAAGAATAAGGGTTGGCG+AGG 0.605096 1.1:-19777582 MS.gene31896:CDS
TGAAAGCAGAAGAAGGAACA+TGG 0.607559 1.1:-19780047 MS.gene31896:CDS
TCAAGTGTTCACTATGGACG+TGG 0.612848 1.1:-19782876 MS.gene31896:CDS
TAATCTATCACCTTCCACAT+CGG 0.613942 1.1:+19778877 None:intergenic
TTATCGCGATCCGATGTGGA+AGG 0.627051 1.1:-19778887 MS.gene31896:CDS
ATCAACATCTCGATCATGGG+TGG 0.629808 1.1:-19780005 MS.gene31896:CDS
GGGTTGGCGAGGATAGAGCT+TGG 0.634141 1.1:-19777571 MS.gene31896:CDS
GGACGTGGAAGTGAAGCTAA+GGG 0.634918 1.1:-19782861 MS.gene31896:CDS
AGAGCACTGCTACACCTCAA+GGG 0.641527 1.1:-19779245 MS.gene31896:CDS
GCAGAGGCTAATAGAAACTG+TGG 0.644824 1.1:-19781252 MS.gene31896:intron
TACTATTATCCCAGCCACAA+AGG 0.646969 1.1:-19780495 MS.gene31896:CDS
GAATGAGTTATTGCAACAGA+AGG 0.647927 1.1:-19780696 MS.gene31896:CDS
GTGTTGGTGAGGACAGGGCA+TGG 0.648324 1.1:-19780661 MS.gene31896:CDS
ATGAGCATCTCGACTATGGG+TGG 0.648558 1.1:-19778301 MS.gene31896:CDS
GGAAGAAACATGGTTTGTGG+AGG 0.653505 1.1:-19778333 MS.gene31896:CDS
CTAGTGCTGCTACACCTCAA+GGG 0.659036 1.1:-19781573 MS.gene31896:CDS
AGAAGGAACATGGTTTGTGG+AGG 0.660933 1.1:-19780037 MS.gene31896:CDS
GGGACCGAAAGAATAAGGGT+TGG 0.663014 1.1:-19777587 MS.gene31896:CDS
GAGGCTAATAGAATCAGAGG+AGG 0.693921 1.1:-19779010 MS.gene31896:CDS
GAGGCTAATAGAAACTGTGG+AGG 0.696340 1.1:-19781249 MS.gene31896:CDS
AAAATGAATTGGGTACAACG+CGG 0.771281 1.1:-19781868 MS.gene31896:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTTATTCAATAATTAAAT+TGG + chr1.1:19777769-19777788 None:intergenic 10.0%
!! GTTTATTCAATAATTAAATT+GGG + chr1.1:19777768-19777787 None:intergenic 10.0%
!! TTATTAGAGATATTAATTAA+AGG + chr1.1:19782757-19782776 None:intergenic 10.0%
!!! TTTAGGTATATTTTAATTAT+TGG - chr1.1:19779597-19779616 MS.gene31896:intron 10.0%
!!! AATTATTTTCAGCATTTAAA+AGG + chr1.1:19781382-19781401 None:intergenic 15.0%
!!! AGTTTTTGAAATTAAATTCA+TGG - chr1.1:19778181-19778200 MS.gene31896:intron 15.0%
!!! GTTTACTAAAAAAAAAGTAT+AGG + chr1.1:19781589-19781608 None:intergenic 15.0%
!!! TAATTTAATTTTTTTTGCAG+AGG - chr1.1:19781397-19781416 MS.gene31896:intron 15.0%
!!! TATTGAATAAACTTTGTTAT+CGG - chr1.1:19777776-19777795 MS.gene31896:intron 15.0%
!! AAAAGACATGATATATTTAG+TGG - chr1.1:19782046-19782065 MS.gene31896:intron 20.0%
!! AAATACACAAAAAGTAAAGA+TGG - chr1.1:19781458-19781477 MS.gene31896:intron 20.0%
!! AAGAGACATAATATATTTAG+TGG - chr1.1:19780342-19780361 MS.gene31896:intron 20.0%
!! AATACACAAAAAGTAAAGAT+GGG - chr1.1:19781459-19781478 MS.gene31896:intron 20.0%
!! AATTTGTATGCATTAAAAAG+TGG + chr1.1:19778978-19778997 None:intergenic 20.0%
!! ACATTGACAAAAATGTTATT+AGG - chr1.1:19778944-19778963 MS.gene31896:CDS 20.0%
!! AGTAGTATGTTTACATTATT+TGG + chr1.1:19781615-19781634 None:intergenic 20.0%
!! TAAAAAATACGTAAATACAG+CGG + chr1.1:19779037-19779056 None:intergenic 20.0%
!! TACGGATTTATTATCATTAA+TGG - chr1.1:19778006-19778025 MS.gene31896:intron 20.0%
!! TATATTTAGTGGAAATTTAG+TGG - chr1.1:19780353-19780372 MS.gene31896:intron 20.0%
!! TATTTACAAGAGAAACATTT+GGG + chr1.1:19779446-19779465 None:intergenic 20.0%
!! TGATATATTTAGTGGAAATT+CGG - chr1.1:19782054-19782073 MS.gene31896:intron 20.0%
!! TTGAATTTGTCATGTAAATT+CGG + chr1.1:19780186-19780205 None:intergenic 20.0%
!!! AAAGAAAGCATCTTAAAAAA+AGG + chr1.1:19782638-19782657 None:intergenic 20.0%
!!! AGATTTTCATGTCATTATAT+TGG - chr1.1:19778668-19778687 MS.gene31896:intron 20.0%
!!! ATCATGTGTAACAAATTTTA+AGG - chr1.1:19780044-19780063 MS.gene31896:CDS 20.0%
!!! CAAAATTTTAGGTAGAAATT+GGG + chr1.1:19777964-19777983 None:intergenic 20.0%
!!! GTTTTTAGTGTCAAAATTTT+AGG + chr1.1:19777975-19777994 None:intergenic 20.0%
!!! TCAAAATTTTAGGTAGAAAT+TGG + chr1.1:19777965-19777984 None:intergenic 20.0%
!!! TTATAATTGCTTTGATTTGA+TGG - chr1.1:19777878-19777897 MS.gene31896:intron 20.0%
!!! TTTTGAAATTAAATTCATGG+AGG - chr1.1:19778184-19778203 MS.gene31896:intron 20.0%
! AAAAAATACGTAAATACAGC+GGG + chr1.1:19779036-19779055 None:intergenic 25.0%
! AAGTAACAATAGAGACATTT+AGG - chr1.1:19779580-19779599 MS.gene31896:intron 25.0%
! AATCGAAAGAATGAATGAAA+TGG + chr1.1:19777675-19777694 None:intergenic 25.0%
! AATGATAATAAATCCGTACA+TGG + chr1.1:19778004-19778023 None:intergenic 25.0%
! AATGCACAAAAACTAAAGAT+AGG - chr1.1:19779220-19779239 MS.gene31896:CDS 25.0%
! AATTGGGTCAATGATTAAAA+TGG + chr1.1:19777752-19777771 None:intergenic 25.0%
! ACTAACAGAAAACATATTCA+AGG - chr1.1:19779484-19779503 MS.gene31896:intron 25.0%
! AGAACAAAGAAAACAGTTTA+AGG + chr1.1:19781845-19781864 None:intergenic 25.0%
! ATAGTAATTGTGAATGAAAG+TGG + chr1.1:19779917-19779936 None:intergenic 25.0%
! ATTGGGTCAATGATTAAAAT+GGG + chr1.1:19777751-19777770 None:intergenic 25.0%
! ATTTACAAGAGAAACATTTG+GGG + chr1.1:19779445-19779464 None:intergenic 25.0%
! CATTAATGGAATTCATCATT+TGG - chr1.1:19778020-19778039 MS.gene31896:intron 25.0%
! CATTGAAGGTTATAATAGAT+TGG - chr1.1:19779314-19779333 MS.gene31896:intron 25.0%
! CATTTCTAATTGAAACTCAT+TGG - chr1.1:19778430-19778449 MS.gene31896:intron 25.0%
! CTATTTACAAGAGAAACATT+TGG + chr1.1:19779447-19779466 None:intergenic 25.0%
! GAATTTACATGACAAATTCA+AGG - chr1.1:19780185-19780204 MS.gene31896:intron 25.0%
! GATAATTTGAGAGTGAAATT+GGG + chr1.1:19781524-19781543 None:intergenic 25.0%
! GATTGATTATCAAAATCATG+TGG - chr1.1:19780736-19780755 MS.gene31896:intron 25.0%
! TAAGATAATTTCACTGTCAT+TGG + chr1.1:19781127-19781146 None:intergenic 25.0%
! TATATTGGATGATAGTAGTT+TGG - chr1.1:19778683-19778702 MS.gene31896:intron 25.0%
! TGTTTGATACATATATGCTT+TGG - chr1.1:19778316-19778335 MS.gene31896:CDS 25.0%
! TTATAACCTTCAATGTGATA+TGG + chr1.1:19779309-19779328 None:intergenic 25.0%
! TTTGTTCTTATATATGCAGT+TGG - chr1.1:19782000-19782019 MS.gene31896:intron 25.0%
!! TACAAGAAATCTGAAGTAAT+TGG + chr1.1:19778260-19778279 None:intergenic 25.0%
!! TTGATTTTCTTTTTCTTGAG+GGG + chr1.1:19778816-19778835 None:intergenic 25.0%
!! TTTTGTAACATCATTAGACA+AGG - chr1.1:19781914-19781933 MS.gene31896:CDS 25.0%
!!! AGTTGATTTTCTTTTTCTTG+AGG + chr1.1:19778818-19778837 None:intergenic 25.0%
!!! CTTTTAGTTTTCCAATACAA+AGG - chr1.1:19778639-19778658 MS.gene31896:intron 25.0%
!!! GTTGATTTTCTTTTTCTTGA+GGG + chr1.1:19778817-19778836 None:intergenic 25.0%
!!! TAGTTTTTAAAGTTTTGCAG+AGG - chr1.1:19779158-19779177 MS.gene31896:intron 25.0%
!!! TTGTGTTTTGTCACTTTAAA+GGG - chr1.1:19782271-19782290 MS.gene31896:intron 25.0%
!!! TTTGTGTTTTGTCACTTTAA+AGG - chr1.1:19782270-19782289 MS.gene31896:intron 25.0%
AATCATACCAACTCTTTAAG+TGG - chr1.1:19778070-19778089 MS.gene31896:intron 30.0%
ACATATTCCATATCTTCTTC+TGG + chr1.1:19781710-19781729 None:intergenic 30.0%
ATAAGTATATGTAACGTGCA+TGG + chr1.1:19779631-19779650 None:intergenic 30.0%
ATCTAGGTATTATCTGTTTC+AGG + chr1.1:19779691-19779710 None:intergenic 30.0%
ATTATCAAAATCATGTGGTC+AGG - chr1.1:19780741-19780760 MS.gene31896:intron 30.0%
ATTCACAAAGTTGAATGGTT+TGG + chr1.1:19777603-19777622 None:intergenic 30.0%
CAAACATTCTTCTAAACATC+TGG + chr1.1:19780558-19780577 None:intergenic 30.0%
CGATAATTTGAGAGTGAAAT+TGG + chr1.1:19781525-19781544 None:intergenic 30.0%
GAATACGAAGATTTGAATGT+TGG - chr1.1:19777806-19777825 MS.gene31896:intron 30.0%
GATAATTTGACAGTGAAACT+AGG + chr1.1:19779285-19779304 None:intergenic 30.0%
GGAAGGTGATAGATTAAAAT+TGG - chr1.1:19781556-19781575 MS.gene31896:CDS 30.0%
GTAGTATGTTTACATTGACA+AGG + chr1.1:19780080-19780099 None:intergenic 30.0%
GTCTGAGTTCAAAATGAATT+GGG - chr1.1:19778548-19778567 MS.gene31896:CDS 30.0%
TAAAAACAAACAGCCATGTA+CGG - chr1.1:19777988-19778007 MS.gene31896:intron 30.0%
TAATGGAATTCATCATTTGG+TGG - chr1.1:19778023-19778042 MS.gene31896:intron 30.0%
TAATTGGAGTAAAGGAAAAC+AGG - chr1.1:19782363-19782382 MS.gene31896:intron 30.0%
TATATTTAGTGGAAATTCGG+TGG - chr1.1:19782057-19782076 MS.gene31896:intron 30.0%
TATTCTCTAATTGTGAGACT+TGG - chr1.1:19782312-19782331 MS.gene31896:intron 30.0%
TATTCTTTCGAAAACCATCT+AGG + chr1.1:19779707-19779726 None:intergenic 30.0%
TATTCTTTCGTAAACAGAGT+TGG + chr1.1:19782803-19782822 None:intergenic 30.0%
TCACAAATTATCATCCCAAT+GGG - chr1.1:19779256-19779275 MS.gene31896:CDS 30.0%
TGAAACAGATAATACCTAGA+TGG - chr1.1:19779690-19779709 MS.gene31896:intron 30.0%
TGCTTTACTGTTTAATGTTG+TGG + chr1.1:19782488-19782507 None:intergenic 30.0%
TTATCAAAATCATGTGGTCA+GGG - chr1.1:19780742-19780761 MS.gene31896:intron 30.0%
TTCACAAATTATCATCCCAA+TGG - chr1.1:19779255-19779274 MS.gene31896:CDS 30.0%
TTCCTTTACTCCAATTATGA+GGG + chr1.1:19782360-19782379 None:intergenic 30.0%
TTTCCTTTACTCCAATTATG+AGG + chr1.1:19782361-19782380 None:intergenic 30.0%
TTTGTTCTTATATATGCAGC+TGG - chr1.1:19780296-19780315 MS.gene31896:intron 30.0%
! ATGGAATATGTGAGCAATTT+TGG - chr1.1:19781719-19781738 MS.gene31896:CDS 30.0%
! CATACATAGTTTTTCTCACA+TGG - chr1.1:19777835-19777854 MS.gene31896:intron 30.0%
! CATGATCAAAACAGTATTGA+GGG + chr1.1:19778133-19778152 None:intergenic 30.0%
! GTTCACGTCTTGATTTTTAA+TGG + chr1.1:19779092-19779111 None:intergenic 30.0%
! TAGTTTTCCAATACAAAGGA+GGG - chr1.1:19778643-19778662 MS.gene31896:intron 30.0%
! TGGGTATTTTCATGATCATT+CGG + chr1.1:19778789-19778808 None:intergenic 30.0%
! TTTTGTAACATCATTCGACA+AGG - chr1.1:19780209-19780228 MS.gene31896:intron 30.0%
!! AGAGGCTTTCATTTTTCTAT+AGG - chr1.1:19779390-19779409 MS.gene31896:intron 30.0%
!! TAATTGCTTTGATTTGATGG+AGG - chr1.1:19777881-19777900 MS.gene31896:intron 30.0%
!! TTAGTTTTCCAATACAAAGG+AGG - chr1.1:19778642-19778661 MS.gene31896:intron 30.0%
!! TTGGTTTTCTTTTTCTTCAG+GGG + chr1.1:19781153-19781172 None:intergenic 30.0%
!!! ATCTGGTTTTCTTAGGTATT+TGG - chr1.1:19777922-19777941 MS.gene31896:intron 30.0%
!!! CTTTTTTTTGTTGTCTAGCT+AGG - chr1.1:19782611-19782630 MS.gene31896:intron 30.0%
!!! GTTGGTTTTCTTTTTCTTCA+GGG + chr1.1:19781154-19781173 None:intergenic 30.0%
!!! TGTTGGTTTTCTTTTTCTTC+AGG + chr1.1:19781155-19781174 None:intergenic 30.0%
AAAACAGGAAATTCAGAAGG+CGG - chr1.1:19782378-19782397 MS.gene31896:intron 35.0%
AAAATGAATTGGGTACAACG+CGG - chr1.1:19778558-19778577 MS.gene31896:intron 35.0%
AAACAGTCCACTTAAAGAGT+TGG + chr1.1:19778080-19778099 None:intergenic 35.0%
AAATACCTTGAAACTGCTCT+GGG + chr1.1:19779964-19779983 None:intergenic 35.0%
AAGGAACATGACTTGAAAGT+TGG - chr1.1:19779857-19779876 MS.gene31896:intron 35.0%
AATACTCGAACGAGTTTGAA+GGG - chr1.1:19782819-19782838 MS.gene31896:CDS 35.0%
ACTGATTAAGCAAACTGTGT+TGG + chr1.1:19778344-19778363 None:intergenic 35.0%
AGAGATTGCAAAGTAAAGAC+CGG - chr1.1:19782175-19782194 MS.gene31896:intron 35.0%
AGCACTCATATTTCATAGAG+TGG + chr1.1:19780843-19780862 None:intergenic 35.0%
AGGAAAACAGGAAATTCAGA+AGG - chr1.1:19782375-19782394 MS.gene31896:intron 35.0%
AGTGAAATTGGGATTCTCAT+TGG + chr1.1:19781513-19781532 None:intergenic 35.0%
ATAATGAGCATCTCGACTAT+GGG - chr1.1:19782122-19782141 MS.gene31896:intron 35.0%
ATGATCAACATCTCGATCAT+GGG - chr1.1:19780418-19780437 MS.gene31896:intron 35.0%
ATGTTGCATACTTGCTTATC+TGG - chr1.1:19777905-19777924 MS.gene31896:intron 35.0%
ATTCTACACATTCACACACA+TGG + chr1.1:19780271-19780290 None:intergenic 35.0%
CACACACATGGCTATATAAA+TGG + chr1.1:19780259-19780278 None:intergenic 35.0%
CAGTTAGGTACAAATATTGC+TGG + chr1.1:19779366-19779385 None:intergenic 35.0%
CATTCAACTTTGTGAATTGC+AGG - chr1.1:19777606-19777625 MS.gene31896:CDS 35.0%
CCATGATCAAAACAGTATTG+AGG + chr1.1:19778134-19778153 None:intergenic 35.0%
CGTGCAAAATCATGTATTCA+AGG - chr1.1:19780521-19780540 MS.gene31896:CDS 35.0%
CTGATTAAGCAAACTGTGTT+GGG + chr1.1:19778343-19778362 None:intergenic 35.0%
CTGCAATTCACAAAGTTGAA+TGG + chr1.1:19777608-19777627 None:intergenic 35.0%
GAATGAGTTATTGCAACAGA+AGG - chr1.1:19779730-19779749 MS.gene31896:intron 35.0%
GGTCTGAGTTCAAAATGAAT+TGG - chr1.1:19778547-19778566 MS.gene31896:CDS 35.0%
GTATGCACTGTTTCAATTCA+TGG + chr1.1:19782781-19782800 None:intergenic 35.0%
TAATCTATCACCTTCCACAT+CGG + chr1.1:19781552-19781571 None:intergenic 35.0%
TAGTGTTGCAATAGCTACTA+TGG - chr1.1:19782577-19782596 MS.gene31896:intron 35.0%
TATAATGAGCATCTCGACTA+TGG - chr1.1:19782121-19782140 MS.gene31896:intron 35.0%
TATGATCAACATCTCGATCA+TGG - chr1.1:19780417-19780436 MS.gene31896:intron 35.0%
TGAAAGTAGAGGAAGAAACA+TGG - chr1.1:19782083-19782102 MS.gene31896:intron 35.0%
TGAATGCAAAGTGAAGATTG+AGG - chr1.1:19780691-19780710 MS.gene31896:CDS 35.0%
TTATCGCCATATCACATTGA+AGG - chr1.1:19779300-19779319 MS.gene31896:intron 35.0%
TTCCCTCATAATTGGAGTAA+AGG - chr1.1:19782355-19782374 MS.gene31896:intron 35.0%
TTGCAATAGCTACTATGGAA+TGG - chr1.1:19782582-19782601 MS.gene31896:intron 35.0%
TTTGTACCTAACTGTGTAAG+AGG - chr1.1:19779372-19779391 MS.gene31896:intron 35.0%
! AATATTGTTTGCTAGTGTCG+TGG + chr1.1:19781098-19781117 None:intergenic 35.0%
! ACACAGTTTGCTTAATCAGT+CGG - chr1.1:19778344-19778363 MS.gene31896:CDS 35.0%
! ATAGCTCTGTTAGAATGACT+TGG + chr1.1:19782698-19782717 None:intergenic 35.0%
! ATTTCTTAGCTTTCTTACCC+CGG + chr1.1:19779203-19779222 None:intergenic 35.0%
! ATTTTGAACTCAGACCCATT+TGG + chr1.1:19778543-19778562 None:intergenic 35.0%
! CAGGTAAAGTACATGTTTTC+TGG - chr1.1:19781256-19781275 MS.gene31896:intron 35.0%
! GAATGACTTGGATAACAGAA+TGG + chr1.1:19782686-19782705 None:intergenic 35.0%
! GCATCGTCTCTGATTTTATT+TGG + chr1.1:19781688-19781707 None:intergenic 35.0%
! GGTTTTCTTAGGTATTTGGA+TGG - chr1.1:19777926-19777945 MS.gene31896:intron 35.0%
! GTATTATCTGTTTCAGGTCA+TGG + chr1.1:19779685-19779704 None:intergenic 35.0%
! TGTCTTTTTAACAGCTCACT+TGG + chr1.1:19782034-19782053 None:intergenic 35.0%
! TTTACCTGAGACTTTTTGCT+GGG + chr1.1:19781244-19781263 None:intergenic 35.0%
! TTTTTGCACTGAATCAGCTT+AGG + chr1.1:19782513-19782532 None:intergenic 35.0%
!! AGCAGTTTTATAATGCAGGT+TGG - chr1.1:19779818-19779837 MS.gene31896:intron 35.0%
!! CAAGAGCAGTTTTATAATGC+AGG - chr1.1:19779814-19779833 MS.gene31896:intron 35.0%
!! CTCTTTAAGTGGACTGTTTA+AGG - chr1.1:19778081-19778100 MS.gene31896:intron 35.0%
!! GACTGCATGTTTTTAATCCT+AGG - chr1.1:19779010-19779029 MS.gene31896:CDS 35.0%
!! TGGTTGGAAGTCATTTTCAA+AGG - chr1.1:19779838-19779857 MS.gene31896:intron 35.0%
!!! CCTCAATACTGTTTTGATCA+TGG - chr1.1:19778131-19778150 MS.gene31896:intron 35.0%
!!! CTTGCTTATCTGGTTTTCTT+AGG - chr1.1:19777915-19777934 MS.gene31896:intron 35.0%
!!! GTTTTATAATGCAGGTTGGT+TGG - chr1.1:19779822-19779841 MS.gene31896:intron 35.0%
AAACCTCAAAGCTTGAAGGA+AGG + chr1.1:19780914-19780933 None:intergenic 40.0%
AACAGAAGCCCAAAAACACA+TGG - chr1.1:19781755-19781774 MS.gene31896:CDS 40.0%
AATCTGACCCTCCTTTGTAT+TGG + chr1.1:19778653-19778672 None:intergenic 40.0%
ACATCGCTTAGACTTCCAAA+TGG - chr1.1:19778525-19778544 MS.gene31896:CDS 40.0%
AGAAGAAGGAACATGGTTTG+TGG - chr1.1:19780386-19780405 MS.gene31896:intron 40.0%
AGAGATCGCAAAGTGAAGAT+TGG - chr1.1:19780471-19780490 MS.gene31896:CDS 40.0%
AGAGGAAGAAACATGGTTTG+TGG - chr1.1:19782090-19782109 MS.gene31896:intron 40.0%
CAATGATGAACAAGAGGCTA+AGG - chr1.1:19778731-19778750 MS.gene31896:CDS 40.0%
CAATGTCTTGATGAACCTTG+AGG + chr1.1:19782431-19782450 None:intergenic 40.0%
CATCGCTTAGACTTCCAAAT+GGG - chr1.1:19778526-19778545 MS.gene31896:CDS 40.0%
CGTGAACACATTCAACACAA+AGG + chr1.1:19780939-19780958 None:intergenic 40.0%
CTCACCAACACTTCTAATTG+TGG + chr1.1:19779756-19779775 None:intergenic 40.0%
CTGTGTTCTTCCCTCATAAT+TGG - chr1.1:19782347-19782366 MS.gene31896:intron 40.0%
GAAATACCTTGAAACTGCTC+TGG + chr1.1:19779965-19779984 None:intergenic 40.0%
GAATACTCGAACGAGTTTGA+AGG - chr1.1:19782818-19782837 MS.gene31896:CDS 40.0%
GAGATGCAATGATGAACAAG+AGG - chr1.1:19778725-19778744 MS.gene31896:CDS 40.0%
GCATCCTTGCAAAAAGTTTC+AGG - chr1.1:19778909-19778928 MS.gene31896:CDS 40.0%
GGAAATTCGTAGAGAGACAT+TGG - chr1.1:19778484-19778503 MS.gene31896:intron 40.0%
GGTTAAACCTCAAAGCTTGA+AGG + chr1.1:19780918-19780937 None:intergenic 40.0%
TACTATTATCCCAGCCACAA+AGG - chr1.1:19779931-19779950 MS.gene31896:CDS 40.0%
TCATCGTTGCATGTCATACT+TGG + chr1.1:19781075-19781094 None:intergenic 40.0%
TCTTGATGAACCTTGAGGAT+TGG + chr1.1:19782426-19782445 None:intergenic 40.0%
TCTTGTATTAGTGCTACGCA+TGG - chr1.1:19778273-19778292 MS.gene31896:CDS 40.0%
TGAAAGCAGAAGAAGGAACA+TGG - chr1.1:19780379-19780398 MS.gene31896:intron 40.0%
TGAAAGCCTCTTACACAGTT+AGG + chr1.1:19779381-19779400 None:intergenic 40.0%
TGAAGGGACCGAAAGAATAA+GGG - chr1.1:19782835-19782854 MS.gene31896:CDS 40.0%
TGCGCAAAATCATGTGTTCA+AGG - chr1.1:19782225-19782244 MS.gene31896:intron 40.0%
TGTCTCTCTACGAATTTCCT+TGG + chr1.1:19778483-19778502 None:intergenic 40.0%
TGTTCTTGCAGATGATTCCA+AGG - chr1.1:19778463-19778482 MS.gene31896:intron 40.0%
TTGAAGGGACCGAAAGAATA+AGG - chr1.1:19782834-19782853 MS.gene31896:CDS 40.0%
TTTGGAAGTCTAAGCGATGT+TGG + chr1.1:19778525-19778544 None:intergenic 40.0%
! AAGGCCACAATTAGAAGTGT+TGG - chr1.1:19779749-19779768 MS.gene31896:intron 40.0%
! CTTGCCTGAAACTTTTTGCA+AGG + chr1.1:19778916-19778935 None:intergenic 40.0%
! CTTTACCTGAGACTTTTTGC+TGG + chr1.1:19781245-19781264 None:intergenic 40.0%
! CTTTTTCTTGAGGGGTTGTT+GGG + chr1.1:19778808-19778827 None:intergenic 40.0%
! GGTATGATTGAGAGTACAAG+TGG + chr1.1:19778059-19778078 None:intergenic 40.0%
! TCCTGAGACCATGTGTTTTT+GGG + chr1.1:19781766-19781785 None:intergenic 40.0%
! TCTTTTTCTTGAGGGGTTGT+TGG + chr1.1:19778809-19778828 None:intergenic 40.0%
!! CACAATTAGAAGTGTTGGTG+AGG - chr1.1:19779754-19779773 MS.gene31896:intron 40.0%
!! TTTGCTTTTGATCCCTGACA+AGG - chr1.1:19781636-19781655 MS.gene31896:CDS 40.0%
AAGCTTGAAGGAAGGAGACT+TGG + chr1.1:19780906-19780925 None:intergenic 45.0%
AATAGAATCAGAGGAGGCAG+TGG - chr1.1:19781422-19781441 MS.gene31896:intron 45.0%
ACACCTCAAGGGACAAACAT+TGG - chr1.1:19778864-19778883 MS.gene31896:intron 45.0%
AGCAGTGCTCTCATTTGTGT+TGG + chr1.1:19781172-19781191 None:intergenic 45.0%
AGTGAAACTAGGACTCCCAT+TGG + chr1.1:19779274-19779293 None:intergenic 45.0%
ATCAACATCTCGATCATGGG+TGG - chr1.1:19780421-19780440 MS.gene31896:intron 45.0%
ATGGGTGGTTCACTAAAGGT+TGG - chr1.1:19780436-19780455 MS.gene31896:intron 45.0%
ATTAGTGCTACGCATGGCTT+TGG - chr1.1:19778279-19778298 MS.gene31896:CDS 45.0%
CTAATAGAAACTGTGGAGGC+CGG - chr1.1:19779181-19779200 MS.gene31896:intron 45.0%
CTCAAACAAGCAAGTGTCTC+CGG + chr1.1:19782197-19782216 None:intergenic 45.0%
CTCGCCAACCCTTATTCTTT+CGG + chr1.1:19782846-19782865 None:intergenic 45.0%
GACGATGCCAGAAGAAGATA+TGG - chr1.1:19781700-19781719 MS.gene31896:CDS 45.0%
GAGCTTGGAAGGTGAATATG+AGG - chr1.1:19782870-19782889 MS.gene31896:CDS 45.0%
GAGGCTAATAGAAACTGTGG+AGG - chr1.1:19779177-19779196 MS.gene31896:intron 45.0%
GAGGCTAATAGAATCAGAGG+AGG - chr1.1:19781416-19781435 MS.gene31896:intron 45.0%
GATCATGGGTGGTTCACTAA+AGG - chr1.1:19780432-19780451 MS.gene31896:intron 45.0%
GCAGAGGCTAATAGAAACTG+TGG - chr1.1:19779174-19779193 MS.gene31896:intron 45.0%
GCAGAGGCTAATAGAATCAG+AGG - chr1.1:19781413-19781432 MS.gene31896:intron 45.0%
GTGAAACTAGGACTCCCATT+GGG + chr1.1:19779273-19779292 None:intergenic 45.0%
GTGGAGTTGAAAGCAGAAGA+AGG - chr1.1:19780372-19780391 MS.gene31896:intron 45.0%
GTGTTCACGACAGTTATGTG+CGG - chr1.1:19780950-19780969 MS.gene31896:intron 45.0%
TAATAGAAACTGTGGAGGCC+GGG - chr1.1:19779182-19779201 MS.gene31896:intron 45.0%
TCAAGTGTTCACTATGGACG+TGG - chr1.1:19777550-19777569 MS.gene31896:CDS 45.0%
TCTCCTTCCTTCAAGCTTTG+AGG - chr1.1:19780908-19780927 MS.gene31896:intron 45.0%
TGATGAACCTTGAGGATTGG+AGG + chr1.1:19782423-19782442 None:intergenic 45.0%
TGTCTCTTCAACAGCTCACT+TGG + chr1.1:19780330-19780349 None:intergenic 45.0%
TTCGGTGGAGTTGAAAGTAG+AGG - chr1.1:19782072-19782091 MS.gene31896:intron 45.0%
TTGCCAATGTTTGTCCCTTG+AGG + chr1.1:19778870-19778889 None:intergenic 45.0%
! ACGATGTTTGGCTTCAGAAC+TGG - chr1.1:19778583-19778602 MS.gene31896:intron 45.0%
! AGAAGGAACATGGTTTGTGG+AGG - chr1.1:19780389-19780408 MS.gene31896:intron 45.0%
! CTCCTGAGACCATGTGTTTT+TGG + chr1.1:19781767-19781786 None:intergenic 45.0%
! GGAAGAAACATGGTTTGTGG+AGG - chr1.1:19782093-19782112 MS.gene31896:intron 45.0%
! TTTGGCTTCAGAACTGGAAG+AGG - chr1.1:19778589-19778608 MS.gene31896:intron 45.0%
!! TAGAAGTGTTGGTGAGGACA+GGG - chr1.1:19779760-19779779 MS.gene31896:intron 45.0%
!! TTAGAAGTGTTGGTGAGGAC+AGG - chr1.1:19779759-19779778 MS.gene31896:intron 45.0%
AATAGAAACTGTGGAGGCCG+GGG - chr1.1:19779183-19779202 MS.gene31896:intron 50.0%
AATTCAGAAGGCGGTCCAAC+AGG - chr1.1:19782387-19782406 MS.gene31896:intron 50.0%
ACACCTCAAGGGACAAGCAT+TGG - chr1.1:19781192-19781211 MS.gene31896:CDS 50.0%
ATGAGCATCTCGACTATGGG+TGG - chr1.1:19782125-19782144 MS.gene31896:intron 50.0%
GACTATGGGTGGTTCACTGA+AGG - chr1.1:19782136-19782155 MS.gene31896:intron 50.0%
GATGCTTCCTCCAATCCTCA+AGG - chr1.1:19782413-19782432 MS.gene31896:intron 50.0%
GCAACCCAGCAAAAAGTCTC+AGG - chr1.1:19781237-19781256 MS.gene31896:CDS 50.0%
GCCCAAAAACACATGGTCTC+AGG - chr1.1:19781762-19781781 MS.gene31896:CDS 50.0%
GGACGTGGAAGTGAAGCTAA+GGG - chr1.1:19777565-19777584 MS.gene31896:CDS 50.0%
GGGACCGAAAGAATAAGGGT+TGG - chr1.1:19782839-19782858 MS.gene31896:CDS 50.0%
TACAACGCGGTGACGATGTT+TGG - chr1.1:19778571-19778590 MS.gene31896:intron 50.0%
TACGTAAATACAGCGGGCCT+AGG + chr1.1:19779030-19779049 None:intergenic 50.0%
TGGACGTGGAAGTGAAGCTA+AGG - chr1.1:19777564-19777583 MS.gene31896:CDS 50.0%
TTGCCAATGCTTGTCCCTTG+AGG + chr1.1:19781198-19781217 None:intergenic 50.0%
TTTGATCCCTGACAAGGCTG+TGG - chr1.1:19781642-19781661 MS.gene31896:CDS 50.0%
! ACTAGTGCTGCTACACCTCA+AGG - chr1.1:19778852-19778871 MS.gene31896:intron 50.0%
! CGAAAGAATAAGGGTTGGCG+AGG - chr1.1:19782844-19782863 MS.gene31896:CDS 50.0%
! CTAGTGCTGCTACACCTCAA+GGG - chr1.1:19778853-19778872 MS.gene31896:intron 50.0%
!! AGAGCACTGCTACACCTCAA+GGG - chr1.1:19781181-19781200 MS.gene31896:CDS 50.0%
!! GGAGGAAGCATCATACCTGT+TGG + chr1.1:19782405-19782424 None:intergenic 50.0%
ATGGGTGGTTCACTGAAGGC+TGG - chr1.1:19782140-19782159 MS.gene31896:intron 55.0%
CCATGCCCAGAGCAGTTTCA+AGG - chr1.1:19779956-19779975 MS.gene31896:CDS 55.0%
CTCTGGGCATGGTTCCTTTG+TGG + chr1.1:19779948-19779967 None:intergenic 55.0%
GGCATGGTTCCTTTGTGGCT+GGG + chr1.1:19779943-19779962 None:intergenic 55.0%
TGGCGAGGATAGAGCTTGGA+AGG - chr1.1:19782859-19782878 MS.gene31896:CDS 55.0%
TTTGCGCGCTCTCTCAGATG+TGG - chr1.1:19778612-19778631 MS.gene31896:intron 55.0%
! CCTTGAAACTGCTCTGGGCA+TGG + chr1.1:19779959-19779978 None:intergenic 55.0%
! GCATGTCCACAGCCTTGTCA+GGG + chr1.1:19781651-19781670 None:intergenic 55.0%
! TGCATGTCCACAGCCTTGTC+AGG + chr1.1:19781652-19781671 None:intergenic 55.0%
!! GAGAGCACTGCTACACCTCA+AGG - chr1.1:19781180-19781199 MS.gene31896:CDS 55.0%
GGGCATGGTTCCTTTGTGGC+TGG + chr1.1:19779944-19779963 None:intergenic 60.0%
! GGGTTGGCGAGGATAGAGCT+TGG - chr1.1:19782855-19782874 MS.gene31896:CDS 60.0%
! GTGTTGGTGAGGACAGGGCA+TGG - chr1.1:19779765-19779784 MS.gene31896:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 19777547 19782901 19777547 ID=MS.gene31896
chr1.1 mRNA 19777547 19782901 19777547 ID=MS.gene31896.t1;Parent=MS.gene31896
chr1.1 exon 19782809 19782901 19782809 ID=MS.gene31896.t1.exon1;Parent=MS.gene31896.t1
chr1.1 CDS 19782809 19782901 19782809 ID=cds.MS.gene31896.t1;Parent=MS.gene31896.t1
chr1.1 exon 19781518 19781974 19781518 ID=MS.gene31896.t1.exon2;Parent=MS.gene31896.t1
chr1.1 CDS 19781518 19781974 19781518 ID=cds.MS.gene31896.t1;Parent=MS.gene31896.t1
chr1.1 exon 19781113 19781270 19781113 ID=MS.gene31896.t1.exon3;Parent=MS.gene31896.t1
chr1.1 CDS 19781113 19781270 19781113 ID=cds.MS.gene31896.t1;Parent=MS.gene31896.t1
chr1.1 exon 19780471 19780750 19780471 ID=MS.gene31896.t1.exon4;Parent=MS.gene31896.t1
chr1.1 CDS 19780471 19780750 19780471 ID=cds.MS.gene31896.t1;Parent=MS.gene31896.t1
chr1.1 exon 19780218 19780279 19780218 ID=MS.gene31896.t1.exon5;Parent=MS.gene31896.t1
chr1.1 CDS 19780218 19780279 19780218 ID=cds.MS.gene31896.t1;Parent=MS.gene31896.t1
chr1.1 exon 19779906 19780133 19779906 ID=MS.gene31896.t1.exon6;Parent=MS.gene31896.t1
chr1.1 CDS 19779906 19780133 19779906 ID=cds.MS.gene31896.t1;Parent=MS.gene31896.t1
chr1.1 exon 19779190 19779289 19779190 ID=MS.gene31896.t1.exon7;Parent=MS.gene31896.t1
chr1.1 CDS 19779190 19779289 19779190 ID=cds.MS.gene31896.t1;Parent=MS.gene31896.t1
chr1.1 exon 19778871 19779031 19778871 ID=MS.gene31896.t1.exon8;Parent=MS.gene31896.t1
chr1.1 CDS 19778871 19779031 19778871 ID=cds.MS.gene31896.t1;Parent=MS.gene31896.t1
chr1.1 exon 19778721 19778790 19778721 ID=MS.gene31896.t1.exon9;Parent=MS.gene31896.t1
chr1.1 CDS 19778721 19778790 19778721 ID=cds.MS.gene31896.t1;Parent=MS.gene31896.t1
chr1.1 exon 19778513 19778571 19778513 ID=MS.gene31896.t1.exon10;Parent=MS.gene31896.t1
chr1.1 CDS 19778513 19778571 19778513 ID=cds.MS.gene31896.t1;Parent=MS.gene31896.t1
chr1.1 exon 19778202 19778429 19778202 ID=MS.gene31896.t1.exon11;Parent=MS.gene31896.t1
chr1.1 CDS 19778202 19778429 19778202 ID=cds.MS.gene31896.t1;Parent=MS.gene31896.t1
chr1.1 exon 19777729 19777773 19777729 ID=MS.gene31896.t1.exon12;Parent=MS.gene31896.t1
chr1.1 CDS 19777729 19777773 19777729 ID=cds.MS.gene31896.t1;Parent=MS.gene31896.t1
chr1.1 exon 19777547 19777654 19777547 ID=MS.gene31896.t1.exon13;Parent=MS.gene31896.t1
chr1.1 CDS 19777547 19777654 19777547 ID=cds.MS.gene31896.t1;Parent=MS.gene31896.t1
Gene Sequence

>MS.gene31896

ATGTCAAGTGTTCACTATGGACGTGGAAGTGAAGCTAAGGGAATGCATTTTTACCAAACCATTCAACTTTGTGAATTGCAGGATGAAGAGCTTGTAAGCATTCTCAACTCAGCTTCTTCTTTTTTCCATTTCATTCATTCTTTCGATTATTGAAGTAGCTTTTGTAATTGTGTATCACACTATTTGTTGAAAACAAAACGACCCATTTTAATCATTGACCCAATTTAATTATTGAATAAACTTTGTTATCGGAATTAATGAATACGAAGATTTGAATGTTGGTAAACTCATACATAGTTTTTCTCACATGGAGAATCAAATGCTATATTTCTTATAATTGCTTTGATTTGATGGAGGAATGTTGCATACTTGCTTATCTGGTTTTCTTAGGTATTTGGATGGAGAGTGTCTCAACCCAATTTCTACCTAAAATTTTGACACTAAAAACAAACAGCCATGTACGGATTTATTATCATTAATGGAATTCATCATTTGGTGGAGCTCGTTAACCACTTGTACTCTCAATCATACCAACTCTTTAAGTGGACTGTTTAAGGTTTGTAGTCAATGTGTTTGATGAAAACCCTCAATACTGTTTTGATCATGGTTTCTGTTTAAGAACTAATTTGAGAGCAGTTTTTGAAATTAAATTCATGGAGGAATGTTGCATACTTGCATTATGAGATGACTTGTGTGTATCTACTAGACTTCCAATTACTTCAGATTTCTTGTATTAGTGCTACGCATGGCTTTGGTTCTAAACTCATTTTGTTTGATACATATATGCTTTGGTCCCAACACAGTTTGCTTAATCAGTCGGTGTATTAATTGAATGAAGTTTGCTGCATTAATCACTTGATGTATGCTTTGCTGCATTAATCTTCATTTCTAATTGAAACTCATTGGTTTTTGAAAATGTTCTTGCAGATGATTCCAAGGAAATTCGTAGAGAGACATTGGAAAGATGTATCAAATCCAACATCGCTTAGACTTCCAAATGGGTCTGAGTTCAAAATGAATTGGGTACAACGCGGTGACGATGTTTGGCTTCAGAACTGGAAGAGGTTTGCGCGCTCTCTCAGATGTGGAGATCTTTTAGTTTTCCAATACAAAGGAGGGTCAGATTTTCATGTCATTATATTGGATGATAGTAGTTTGGAAATTGACTATTCATGTATGAGATGCAATGATGAACAAGAGGCTAAGGAGAGTGATGATGATGATGACTGTGTTGAGATTCCGAATGATCATGAAAATACCCAACAACCCCTCAAGAAAAAGAAAATCAACTCAAATGACATTGCTACTAGTGCTGCTACACCTCAAGGGACAAACATTGGCAAGAGAAAAATTAATATCAATGCATCCTTGCAAAAAGTTTCAGGCAAGTAAATGCAACATTGACAAAAATGTTATTAGGCATTCTATCCACTTTTTAATGCATACAAATTACAATAGTGCATGACTGCATGTTTTTAATCCTAGGCCCGCTGTATTTACGTATTTTTTAATTTTTTAACATTTAATTATTTTTCAAGACTGCCATTAAAAATCAAGACGTGAACTTTTATTAGTTTTTTGAAGTTTTTAAAGACTTTCAAATGCTGAAAATAGTTTTTAAAGTTTTGCAGAGGCTAATAGAAACTGTGGAGGCCGGGGTAAGAAAGCTAAGAAATGCACAAAAACTAAAGATAGGAATGAGAGAAGTTTCACAAATTATCATCCCAATGGGAGTCCTAGTTTCACTGTCAAATTATCGCCATATCACATTGAAGGTTATAATAGATTGGTATGTTTGCTTTACTTCTTTTTTTTTCCAGCAATATTTGTACCTAACTGTGTAAGAGGCTTTCATTTTTCTATAGGAACTGAATGTATCGAAATTACAAACAAATCCCCAAATGTTTCTCTTGTAAATAGTCTTATTGAATAAATTTACTAACAGAAAACATATTCAAGGACTAATGTCAATTTATTCAATAAAAGAGAAAAAGTATAGCTAACATACTAAAGACACATTTGAAAATCAAAATAAGTAACAATAGAGACATTTAGGTATATTTTAATTATTGGTTTGACAGCCATGCACGTTACATATACTTATTGAATATATTTTAAGTAATATCTATTTTAAACCATGACCTGAAACAGATAATACCTAGATGGTTTTCGAAAGAATACATGAATGAGTTATTGCAACAGAAGGCCACAATTAGAAGTGTTGGTGAGGACAGGGCATGGTACGTGACGTTATACTTTGATAAAAGCAAGAGCAGTTTTATAATGCAGGTTGGTTGGAAGTCATTTTCAAAGGAACATGACTTGAAAGTTGGTGATGTATGTAAATTTGAGATGACTCAACGCAAACCACTTTCATTCACAATTACTATTATCCCAGCCACAAAGGAACCATGCCCAGAGCAGTTTCAAGGTATTTCTTTCATTATTATTGTTTTGTAATGATAAATAGTTTTAATTTGTTAACAAATAACAAACAATCATGTGTAACAAATTTTAAGGTTTAAATATACCTTGTCAATGTAAACATACTACTCTTTGCTTTTATTGTGTACAATTCATGAAAATATCTTTAAACTATGTTTTCTTTGTTCTTAATTACAGCAGATTCTGTAAGTCCGAATTTACATGACAAATTCAAGGTTTTTGTAACATCATTCGACAAGGTACGAATTACTTAAAATGTCATTACCATTTATATAGCCATGTGTGTGAATGTGTAGAATTTTAATTTGTTCTTATATATGCAGCTGGTTGTACTACCAAGTGAGCTGTTGAAGAGACATAATATATTTAGTGGAAATTTAGTGGAGTTGAAAGCAGAAGAAGGAACATGGTTTGTGGAGGTGAATTATGATCAACATCTCGATCATGGGTGGTTCACTAAAGGTTGGCAAGAATTTATGAGAGATCGCAAAGTGAAGATTGGAGACACTTGTTTGTTTGAGATGATTGACGTGCAAAATCATGTATTCAAGGTTTCAATTATTCCAGATGTTTAGAAGAATGTTTGTGTTTTGTTACTTTGTAATTAGATGTTATATGTTATATTTCATACAATCTTTTTACAATAGATATTTAGTTCTGTTAATGATGTAATTATTACTATCTCAGTTCATCTGTGAATGAATGCAAAGTGAAGATTGAGGACACTAGTTTTTATGAGATATTGATTGATTATCAAAATCATGTGGTCAGGGTTTCAATTAGAAGAACACTTATGTCTTTTGTTAGTTTGCAATTAGAAGATTACATTTCATATGAACTTCAGATGACCACTCTATGAAATATGAGTGCTTTTAGAATTTTCAATCTTTGATCTAAGAGAGCTTGTAACACCAAGTCTCCTTCCTTCAAGCTTTGAGGTTTAACCTTTGTGTTGAATGTGTTCACGACAGTTATGTGCGGTATTTCTCTGACTTTGTCAAGTAAGTGAAGACATTCATGTTAAATTGTTTGTTTTACAAAAGCTAGAGTCAAAACTCACTCAAATTGCAAGAATAAGAGCCAAGTATGACATGCAACGATGACCACGACACTAGCAAACAATATTGTAGTACCAATGACAGTGAAATTATCTTACAACCCCTGAAGAAAAAGAAAACCAACACAAATGAGAGCACTGCTACACCTCAAGGGACAAGCATTGGCAAGATAAAATATCATATGAATGCAACCCAGCAAAAAGTCTCAGGTAAAGTACATGTTTTCTGGAATGTACTTGCTTTATTTATTTTGTTTTTTTGAAGATTAAATTAATTTCATGACTGTCATAAAAAATAAAAATTTCAAGAGTTGAAAATTTTATTTTGTACCTTTTAAATGCTGAAAATAATTTAATTTTTTTTGCAGAGGCTAATAGAATCAGAGGAGGCAGTGGTAAGAAAGCTAATAAATACACAAAAAGTAAAGATGGGAATGAGAGAAGTTACACAAATTCTCAAGCCAATGAGAATCCCAATTTCACTCTCAAATTATCGCGATCCGATGTGGAAGGTGATAGATTAAAATTGGTATGTTTCCTATACTTTTTTTTTAGTAAACAGTCCAAATAATGTAAACATACTACTCTTTGCTTTTGATCCCTGACAAGGCTGTGGACATGCAGAAAACAACGACTCCAAATAAAATCAGAGACGATGCCAGAAGAAGATATGGAATATGTGAGCAATTTTGGAGAACGAATTTCAAACAGAAGCCCAAAAACACATGGTCTCAGGAGTATTCATCTTAATTTTATTTTTCAAGCTTTTATTGCGTACAATTCATGAAAATATCCTTAAACTGTTTTCTTTGTTCTTAATTACTGCAGATTCTGTAAGTCCGAATTTACATGACAAATTCAAGGTTTTTGTAACATCATTAGACAAGGTATGAATTACTTAAAATGTTATTACATTGTATATAACTATGTTGTGAATGTAAATTTTTTTAATTTGTTCTTATATATGCAGTTGGTTGTACTACCAAGTGAGCTGTTAAAAAGACATGATATATTTAGTGGAAATTCGGTGGAGTTGAAAGTAGAGGAAGAAACATGGTTTGTGGAGGTGAGTTATAATGAGCATCTCGACTATGGGTGGTTCACTGAAGGCTGGCAAGAATTTGTAAGAGATTGCAAAGTAAAGACCGGAGACACTTGCTTGTTTGAGATGATTGATGCGCAAAATCATGTGTTCAAGGTTTCAATTGTTTGAGACGCTTGTTTGTGTTTTGTCACTTTAAAGGGTGTTACATAAAATGTAAATATTCTCTAATTGTGAGACTTGGTTTATTTTGAAACTGTGTTCTTCCCTCATAATTGGAGTAAAGGAAAACAGGAAATTCAGAAGGCGGTCCAACAGGTATGATGCTTCCTCCAATCCTCAAGGTTCATCAAGACATTGTCTTCGTCGATCATCTTTAATCAAAGTTTTTCAACCACAACATTAAACAGTAAAGCAAACCTAAGCTGATTCAGTGCAAAAAATTGTTTATTTGCTCAGTCTTTATGTTCTATTGTATATGTTTCGTAGTGTTGCAATAGCTACTATGGAATGGTTGCGTCTTTTTTTTGTTGTCTAGCTAGGTCCTTTTTTTAAGATGCTTTCTTTCTGTTATGAATGTAAAGCTTCTCTGCCATTCTGTTATCCAAGTCATTCTAACAGAGCTATCTGTAAGTTTACTATTGAAAATGTCTACTAATTTTGCCTTTAATTAATATCTCTAATAAACCATGAATTGAAACAGTGCATACCAACTCTGTTTACGAAAGAATACTCGAACGAGTTTGAAGGGACCGAAAGAATAAGGGTTGGCGAGGATAGAGCTTGGAAGGTGAATATGAGGTTTGATTAA
Protein sequence

>MS.gene31896.t1

MSSVHYGRGSEAKGMHFYQTIQLCELQDEELMIPRKFVERHWKDVSNPTSLRLPNGSEFKMNWVQRGDDVWLQNWKRFARSLRCGDLLVFQYKGGSDFHVIILDDSSLEIDYSCMRCNDEQEAKESDDDDDCVEIPNDHENTQQPLKKKKINSNDIATSAATPQGTNIGKRKININASLQKVSEANRNCGGRGKKAKKCTKTKDRNERSFTNYHPNGSPSFTVKLSPYHIEGYNRLIIPRWFSKEYMNELLQQKATIRSVGEDRAWYVTLYFDKSKSSFIMQVGWKSFSKEHDLKVGDVCKFEMTQRKPLSFTITIIPATKEPCPEQFQADSVSPNLHDKFKVFVTSFDKLVVLPSELLKRHNIFSGNLVELKAEEGTWFVEVNYDQHLDHGWFTKGWQEFMRDRKVKIGDTCLFEMIDVQNHVFKKKKTNTNESTATPQGTSIGKIKYHMNATQQKVSEANRIRGGSGKKANKYTKSKDGNERSYTNSQANENPNFTLKLSRSDVEGDRLKLAVDMQKTTTPNKIRDDARRRYGIYSVSPNLHDKFKVFVTSLDKLVVLPSELLKRHDIFSGNSVELKVEEETWFVEVSYNEHLDYGWFTEGWQEFVRDCKVKTGDTCLFEMIDAQNHVFKLLCHSVIQVILTELSCIPTLFTKEYSNEFEGTERIRVGEDRAWKVNMRFD