AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026344

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026344.t1 MTR_6g061070 74.474 333 80 2 1 329 2 333 2.89e-177 499
MS.gene026344.t1 MTR_1g035480 68.254 189 34 2 1 183 1 169 5.06e-86 257
MS.gene026344.t1 MTR_1g033740 67.380 187 39 2 2 183 7 176 2.90e-85 255
MS.gene026344.t1 MTR_1g035520 47.896 309 126 8 32 317 87 383 5.61e-80 248
MS.gene026344.t1 MTR_1g035500 61.702 188 49 2 2 183 10 180 1.75e-79 240
MS.gene026344.t1 MTR_1g035640 39.016 305 158 7 26 329 14 291 1.28e-59 198
MS.gene026344.t1 MTR_1g035470 65.278 144 24 2 32 170 1 123 3.40e-57 182
MS.gene026344.t1 MTR_1g035510 58.974 156 43 2 32 183 1 139 6.39e-57 184
MS.gene026344.t1 MTR_1g035620 40.260 308 143 10 17 319 9 280 1.02e-55 187
MS.gene026344.t1 MTR_1g035570 35.294 306 173 8 26 328 14 297 1.76e-47 165
MS.gene026344.t1 MTR_1g050845 36.482 307 144 8 17 319 9 268 1.09e-44 163
MS.gene026344.t1 MTR_5g044670 28.947 342 197 10 2 329 5 314 5.42e-38 138
MS.gene026344.t1 MTR_1g035650 38.813 219 104 6 17 232 9 200 5.62e-38 134
MS.gene026344.t1 MTR_3g098790 31.173 324 178 14 12 320 8 301 3.11e-34 128
MS.gene026344.t1 MTR_7g050720 32.188 320 181 13 16 317 9 310 1.69e-32 123
MS.gene026344.t1 MTR_7g050560 28.571 315 191 6 11 320 7 292 1.64e-31 120
MS.gene026344.t1 MTR_7g050580 28.707 317 188 11 11 320 7 292 4.16e-31 119
MS.gene026344.t1 MTR_7g050710 28.308 325 198 8 10 320 6 309 1.44e-29 115
MS.gene026344.t1 MTR_4g119990 28.614 332 205 13 12 329 10 323 2.51e-29 115
MS.gene026344.t1 MTR_1g108780 28.333 300 187 10 33 322 13 294 7.88e-29 115
MS.gene026344.t1 MTR_7g050590 29.492 295 189 7 32 320 1 282 2.57e-28 111
MS.gene026344.t1 MTR_6g043890 30.033 303 185 10 14 308 12 295 6.95e-28 111
MS.gene026344.t1 MTR_8g103940 26.367 311 204 9 15 317 37 330 2.38e-27 112
MS.gene026344.t1 MTR_3g061350 28.254 315 168 12 17 316 12 283 3.15e-25 103
MS.gene026344.t1 MTR_1g035460 27.124 306 195 10 32 323 1 292 1.42e-24 103
MS.gene026344.t1 MTR_1g035540 91.489 47 4 0 283 329 31 77 1.67e-24 97.1
MS.gene026344.t1 MTR_3g061370 26.415 318 184 10 10 316 2 280 4.51e-24 99.8
MS.gene026344.t1 MTR_3g061320 26.899 316 188 13 7 317 2 279 6.93e-24 99.4
MS.gene026344.t1 MTR_3g061310 24.437 311 192 9 15 317 10 285 1.81e-23 98.2
MS.gene026344.t1 MTR_3g061340 27.129 317 181 14 7 317 2 274 7.27e-22 93.6
MS.gene026344.t1 MTR_3g061290 34.507 142 88 3 15 153 10 149 1.36e-19 85.9
MS.gene026344.t1 MTR_1g035440 43.689 103 54 2 14 112 12 114 2.73e-18 83.2
MS.gene026344.t1 MTR_3g005460 23.030 330 182 11 1 317 246 516 8.71e-18 84.3
MS.gene026344.t1 MTR_3g061330 30.357 168 103 4 7 162 2 167 9.44e-17 79.0
MS.gene026344.t1 MTR_1g035490 41.667 108 60 3 216 323 97 201 1.76e-16 79.3
MS.gene026344.t1 MTR_1g021330 25.378 331 198 13 15 304 24 346 7.86e-16 77.8
MS.gene026344.t1 MTR_3g005420 25.879 313 162 12 16 320 288 538 9.36e-16 78.2
MS.gene026344.t1 MTR_3g005490 22.430 321 168 9 9 320 13 261 3.29e-15 74.7
MS.gene026344.t1 MTR_1g021440 22.590 332 208 11 15 304 21 345 4.20e-15 75.9
MS.gene026344.t1 MTR_3g061220 36.207 116 61 4 15 129 10 113 4.42e-15 70.9
MS.gene026344.t1 MTR_7g050640 37.000 100 60 2 11 107 7 106 5.94e-15 70.5
MS.gene026344.t1 MTR_3g005495 38.000 100 59 2 16 112 242 341 2.33e-14 73.9
MS.gene026344.t1 MTR_1g021360 24.026 308 183 11 15 304 182 456 3.21e-14 73.6
MS.gene026344.t1 MTR_3g005480 33.962 106 67 2 10 112 14 119 6.90e-14 70.9
MS.gene026344.t1 MTR_1g021400 22.397 317 215 9 15 305 28 339 4.90e-13 69.7
MS.gene026344.t1 MTR_5g070440 32.381 105 68 2 11 112 15 119 6.93e-13 68.2
MS.gene026344.t1 MTR_3g005440 34.000 100 63 2 16 112 241 340 2.90e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026344.t1 AT3G18990 25.075 335 208 12 17 315 6 333 2.38e-20 90.5
MS.gene026344.t1 AT3G18990 25.075 335 208 12 17 315 6 333 3.71e-20 90.5
MS.gene026344.t1 AT4G33280 24.214 318 204 15 18 317 20 318 3.12e-14 72.8

Find 61 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCAACTTTGTGAATTGC+AGG 0.285867 1.2:+20370658 MS.gene026344:CDS
GGGCATGGTTCCTTTGTGGC+TGG 0.290615 1.2:-20372992 None:intergenic
TATATTGGATGATAGTAGTT+TGG 0.295324 1.2:+20371735 MS.gene026344:CDS
GGTCTGAGTTCAAAATGAAT+TGG 0.350012 1.2:+20371599 MS.gene026344:CDS
ATTCACAAAGTTGAATGGTT+TGG 0.365673 1.2:-20370652 None:intergenic
TACAACGCGGTGACGATGTT+TGG 0.370214 1.2:+20371623 MS.gene026344:CDS
TTATAACCTTCAATGTGATA+TGG 0.376198 1.2:-20372358 None:intergenic
CTCTGGGCATGGTTCCTTTG+TGG 0.384680 1.2:-20372996 None:intergenic
AATCTGACCCTCCTTTGTAT+TGG 0.385935 1.2:-20371702 None:intergenic
CTGCAATTCACAAAGTTGAA+TGG 0.392583 1.2:-20370657 None:intergenic
GGCATGGTTCCTTTGTGGCT+GGG 0.402651 1.2:-20372991 None:intergenic
ACGATGTTTGGCTTCAGAAC+TGG 0.404512 1.2:+20371635 MS.gene026344:CDS
CATTGAAGGTTATAATAGAT+TGG 0.414338 1.2:+20372366 MS.gene026344:CDS
GAAATACCTTGAAACTGCTC+TGG 0.423422 1.2:-20373013 None:intergenic
TATTCTTTCGAAAACCATCT+AGG 0.429204 1.2:-20372755 None:intergenic
ATAGTAATTGTGAATGAAAG+TGG 0.438268 1.2:-20372965 None:intergenic
TTAGAAGTGTTGGTGAGGAC+AGG 0.455257 1.2:+20372810 MS.gene026344:CDS
GTCTGAGTTCAAAATGAATT+GGG 0.455385 1.2:+20371600 MS.gene026344:CDS
TTATCGCCATATCACATTGA+AGG 0.463256 1.2:+20372352 MS.gene026344:CDS
CTAATAGAAACTGTGGAGGC+CGG 0.465574 1.2:+20372233 MS.gene026344:CDS
AAGGAACATGACTTGAAAGT+TGG 0.470859 1.2:+20372908 MS.gene026344:CDS
TGTCTCTCTACGAATTTCCT+TGG 0.471061 1.2:-20371532 None:intergenic
TAATAGAAACTGTGGAGGCC+GGG 0.483673 1.2:+20372234 MS.gene026344:CDS
TCAATGTCAAGTGTTCACTA+TGG 0.491973 1.2:+20370596 None:intergenic
TGAAACAGATAATACCTAGA+TGG 0.494737 1.2:+20372741 MS.gene026344:intron
TCACAAATTATCATCCCAAT+GGG 0.508213 1.2:+20372308 MS.gene026344:CDS
TTGCCAATGTTTGTCCCTTG+AGG 0.510253 1.2:-20371919 None:intergenic
TTCACAAATTATCATCCCAA+TGG 0.514529 1.2:+20372307 MS.gene026344:CDS
ACATCGCTTAGACTTCCAAA+TGG 0.515725 1.2:+20371577 MS.gene026344:CDS
CCATGCCCAGAGCAGTTTCA+AGG 0.516067 1.2:+20373007 MS.gene026344:CDS
TGGACGTGGGAGTGAAGCTA+AGG 0.519368 1.2:+20370616 MS.gene026344:CDS
GGAAATTCGTAGAGAGACAT+TGG 0.530097 1.2:+20371536 MS.gene026344:CDS
TTTGGAAGTCTAAGCGATGT+TGG 0.531226 1.2:-20371574 None:intergenic
TTTGGCTTCAGAACTGGAAG+AGG 0.532764 1.2:+20371641 MS.gene026344:CDS
CCTTGAAACTGCTCTGGGCA+TGG 0.538312 1.2:-20373007 None:intergenic
CAATGATGAACAAGAAGCTA+AGG 0.539148 1.2:+20371783 MS.gene026344:CDS
ATTTCTTAGCTTTCTTACCC+CGG 0.551754 1.2:-20372252 None:intergenic
AATAGAAACTGTGGAGGCCG+GGG 0.552110 1.2:+20372235 MS.gene026344:CDS
ACTAGTGCTGCTACACCTCA+AGG 0.555707 1.2:+20371904 MS.gene026344:CDS
CATCGCTTAGACTTCCAAAT+GGG 0.555762 1.2:+20371578 MS.gene026344:CDS
TGTTCTTGCAGATGATTCCA+AGG 0.559130 1.2:+20371515 MS.gene026344:intron
TAGAAGTGTTGGTGAGGACA+GGG 0.562489 1.2:+20372811 MS.gene026344:CDS
GATAATTTGACAGTGAAACT+AGG 0.566923 1.2:-20372334 None:intergenic
TCAAGTGTTCACTATGGACG+TGG 0.567496 1.2:+20370602 MS.gene026344:CDS
CTCACCAACACTTCTAATTG+TGG 0.571224 1.2:-20372804 None:intergenic
AAGGCCACAATTAGAAGTGT+TGG 0.571434 1.2:+20372800 MS.gene026344:CDS
GTGAAACTAGGACTCCCATT+GGG 0.573485 1.2:-20372322 None:intergenic
ACACCTCAAGGGACAAACAT+TGG 0.575666 1.2:+20371916 MS.gene026344:CDS
TTTGCGCGCTCTCTCAGATG+TGG 0.586381 1.2:+20371664 MS.gene026344:CDS
AGTGAAACTAGGACTCCCAT+TGG 0.586614 1.2:-20372323 None:intergenic
AAATACCTTGAAACTGCTCT+GGG 0.589681 1.2:-20373012 None:intergenic
CACAATTAGAAGTGTTGGTG+AGG 0.602624 1.2:+20372805 MS.gene026344:CDS
GGACGTGGGAGTGAAGCTAA+GGG 0.640577 1.2:+20370617 MS.gene026344:CDS
GCAGAGGCTAATAGAAACTG+TGG 0.644824 1.2:+20372226 MS.gene026344:intron
TACTATTATCCCAGCCACAA+AGG 0.646969 1.2:+20372982 MS.gene026344:CDS
GAATGAGTTATTGCAACAGA+AGG 0.647927 1.2:+20372781 MS.gene026344:CDS
GTGTTGGTGAGGACAGGGCA+TGG 0.648324 1.2:+20372816 MS.gene026344:CDS
CTAGTGCTGCTACACCTCAA+GGG 0.659036 1.2:+20371905 MS.gene026344:CDS
GAGGCTAATAGAAACTGTGG+AGG 0.696340 1.2:+20372229 MS.gene026344:intron
CAAGTGTTCACTATGGACGT+GGG 0.700697 1.2:+20370603 MS.gene026344:CDS
AAAATGAATTGGGTACAACG+CGG 0.771281 1.2:+20371610 MS.gene026344:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTTATTCAATAATTAAAT+TGG - chr1.2:20370821-20370840 None:intergenic 10.0%
!! GTTTATTCAATAATTAAATT+GGG - chr1.2:20370820-20370839 None:intergenic 10.0%
!!! TTTAGGTATATTTTAATTAT+TGG + chr1.2:20372648-20372667 MS.gene026344:intron 10.0%
!!! AGTTTTTGAAATTAAATTCA+TGG + chr1.2:20371233-20371252 MS.gene026344:intron 15.0%
!!! TATTGAATAAACTTTGTTAT+CGG + chr1.2:20370828-20370847 MS.gene026344:intron 15.0%
!! AATTTGTATGCATTAAAAAG+TGG - chr1.2:20372030-20372049 None:intergenic 20.0%
!! ACATTGACAAAAATGTTATT+AGG + chr1.2:20371996-20372015 MS.gene026344:intron 20.0%
!! TAAAAAATACGTAAATACAG+CGG - chr1.2:20372089-20372108 None:intergenic 20.0%
!! TACGGATTTATTATCATTAA+TGG + chr1.2:20371058-20371077 MS.gene026344:intron 20.0%
!! TATTTACAAGAGAAACATTT+GGG - chr1.2:20372497-20372516 None:intergenic 20.0%
!!! AGATTTTCATGTCATTATAT+TGG + chr1.2:20371720-20371739 MS.gene026344:CDS 20.0%
!!! CAAAATTTTAGGTAGAAATT+GGG - chr1.2:20371016-20371035 None:intergenic 20.0%
!!! GTTTTTAGTGTCAAAATTTT+AGG - chr1.2:20371027-20371046 None:intergenic 20.0%
!!! TCAAAATTTTAGGTAGAAAT+TGG - chr1.2:20371017-20371036 None:intergenic 20.0%
!!! TTATAATTGCTTTGATTTGA+TGG + chr1.2:20370930-20370949 MS.gene026344:intron 20.0%
!!! TTTTGAAATTAAATTCATGG+AGG + chr1.2:20371236-20371255 MS.gene026344:intron 20.0%
! AAAAAATACGTAAATACAGC+GGG - chr1.2:20372088-20372107 None:intergenic 25.0%
! AAGTAACAATAGAGACATTT+AGG + chr1.2:20372631-20372650 MS.gene026344:intron 25.0%
! AATCGAAAGAATGAATGAAA+TGG - chr1.2:20370727-20370746 None:intergenic 25.0%
! AATGATAATAAATCCGTACA+TGG - chr1.2:20371056-20371075 None:intergenic 25.0%
! AATGCACAAAAACTAAAGAT+AGG + chr1.2:20372272-20372291 MS.gene026344:CDS 25.0%
! AATTGGGTCAATGATTAAAA+TGG - chr1.2:20370804-20370823 None:intergenic 25.0%
! ACTAACAGAAAACATATTCA+AGG + chr1.2:20372535-20372554 MS.gene026344:intron 25.0%
! ATAGTAATTGTGAATGAAAG+TGG - chr1.2:20372968-20372987 None:intergenic 25.0%
! ATTGGGTCAATGATTAAAAT+GGG - chr1.2:20370803-20370822 None:intergenic 25.0%
! ATTTACAAGAGAAACATTTG+GGG - chr1.2:20372496-20372515 None:intergenic 25.0%
! CATTAATGGAATTCATCATT+TGG + chr1.2:20371072-20371091 MS.gene026344:intron 25.0%
! CATTGAAGGTTATAATAGAT+TGG + chr1.2:20372366-20372385 MS.gene026344:CDS 25.0%
! CATTTCTAATTGAAACTCAT+TGG + chr1.2:20371482-20371501 MS.gene026344:intron 25.0%
! CTATTTACAAGAGAAACATT+TGG - chr1.2:20372498-20372517 None:intergenic 25.0%
! TATATTGGATGATAGTAGTT+TGG + chr1.2:20371735-20371754 MS.gene026344:CDS 25.0%
! TGTTTGATACATATATGCTT+TGG + chr1.2:20371368-20371387 MS.gene026344:intron 25.0%
! TTATAACCTTCAATGTGATA+TGG - chr1.2:20372361-20372380 None:intergenic 25.0%
!! TACAAGAAATCTGAAGTAAT+TGG - chr1.2:20371312-20371331 None:intergenic 25.0%
!! TTGATTTTCTTTTTCTTGAG+GGG - chr1.2:20371868-20371887 None:intergenic 25.0%
!!! AGTTGATTTTCTTTTTCTTG+AGG - chr1.2:20371870-20371889 None:intergenic 25.0%
!!! CTTTTAGTTTTCCAATACAA+AGG + chr1.2:20371691-20371710 MS.gene026344:CDS 25.0%
!!! GTTGATTTTCTTTTTCTTGA+GGG - chr1.2:20371869-20371888 None:intergenic 25.0%
!!! TAGTTTTTAAAGTTTTGCAG+AGG + chr1.2:20372210-20372229 MS.gene026344:intron 25.0%
AATCATACCAACTCTTTAAG+TGG + chr1.2:20371122-20371141 MS.gene026344:intron 30.0%
ATAAGTATATGTAACGTGCA+TGG - chr1.2:20372682-20372701 None:intergenic 30.0%
ATCTAGGTATTATCTGTTTC+AGG - chr1.2:20372742-20372761 None:intergenic 30.0%
ATTCACAAAGTTGAATGGTT+TGG - chr1.2:20370655-20370674 None:intergenic 30.0%
GAATACGAAGATTTGAATGT+TGG + chr1.2:20370858-20370877 MS.gene026344:intron 30.0%
GATAATTTGACAGTGAAACT+AGG - chr1.2:20372337-20372356 None:intergenic 30.0%
GTCTGAGTTCAAAATGAATT+GGG + chr1.2:20371600-20371619 MS.gene026344:CDS 30.0%
TAAAAACAAACAGCCATGTA+CGG + chr1.2:20371040-20371059 MS.gene026344:intron 30.0%
TAATGGAATTCATCATTTGG+TGG + chr1.2:20371075-20371094 MS.gene026344:intron 30.0%
TATTCTTTCGAAAACCATCT+AGG - chr1.2:20372758-20372777 None:intergenic 30.0%
TCACAAATTATCATCCCAAT+GGG + chr1.2:20372308-20372327 MS.gene026344:CDS 30.0%
TGAAACAGATAATACCTAGA+TGG + chr1.2:20372741-20372760 MS.gene026344:intron 30.0%
TTCACAAATTATCATCCCAA+TGG + chr1.2:20372307-20372326 MS.gene026344:CDS 30.0%
! CATACATAGTTTTTCTCACA+TGG + chr1.2:20370887-20370906 MS.gene026344:intron 30.0%
! CATGATCAAAACAGTATTGA+GGG - chr1.2:20371185-20371204 None:intergenic 30.0%
! GTTCACGTCTTGATTTTTAA+TGG - chr1.2:20372144-20372163 None:intergenic 30.0%
! TAGTTTTCCAATACAAAGGA+GGG + chr1.2:20371695-20371714 MS.gene026344:CDS 30.0%
! TGGGTATTTTCATGATCATT+CGG - chr1.2:20371841-20371860 None:intergenic 30.0%
!! AGAGGCTTTCATTTTTCTAT+AGG + chr1.2:20372441-20372460 MS.gene026344:intron 30.0%
!! TAATTGCTTTGATTTGATGG+AGG + chr1.2:20370933-20370952 MS.gene026344:intron 30.0%
!! TTAGTTTTCCAATACAAAGG+AGG + chr1.2:20371694-20371713 MS.gene026344:CDS 30.0%
!!! ATCTGGTTTTCTTAGGTATT+TGG + chr1.2:20370974-20370993 MS.gene026344:intron 30.0%
AAAATGAATTGGGTACAACG+CGG + chr1.2:20371610-20371629 MS.gene026344:CDS 35.0%
AAACAGTCCACTTAAAGAGT+TGG - chr1.2:20371132-20371151 None:intergenic 35.0%
AAGGAACATGACTTGAAAGT+TGG + chr1.2:20372908-20372927 MS.gene026344:CDS 35.0%
ACTGATTAAGCAAACTGTGT+TGG - chr1.2:20371396-20371415 None:intergenic 35.0%
ATGTTGCATACTTGCTTATC+TGG + chr1.2:20370957-20370976 MS.gene026344:intron 35.0%
CAATGATGAACAAGAAGCTA+AGG + chr1.2:20371783-20371802 MS.gene026344:CDS 35.0%
CAGTTAGGTACAAATATTGC+TGG - chr1.2:20372417-20372436 None:intergenic 35.0%
CATTCAACTTTGTGAATTGC+AGG + chr1.2:20370658-20370677 MS.gene026344:CDS 35.0%
CCATGATCAAAACAGTATTG+AGG - chr1.2:20371186-20371205 None:intergenic 35.0%
CTGATTAAGCAAACTGTGTT+GGG - chr1.2:20371395-20371414 None:intergenic 35.0%
CTGCAATTCACAAAGTTGAA+TGG - chr1.2:20370660-20370679 None:intergenic 35.0%
GAATGAGTTATTGCAACAGA+AGG + chr1.2:20372781-20372800 MS.gene026344:CDS 35.0%
GGTCTGAGTTCAAAATGAAT+TGG + chr1.2:20371599-20371618 MS.gene026344:CDS 35.0%
TTATCGCCATATCACATTGA+AGG + chr1.2:20372352-20372371 MS.gene026344:CDS 35.0%
TTTGTACCTAACTGTGTAAG+AGG + chr1.2:20372423-20372442 MS.gene026344:intron 35.0%
! ACACAGTTTGCTTAATCAGT+CGG + chr1.2:20371396-20371415 MS.gene026344:intron 35.0%
! ATTTCTTAGCTTTCTTACCC+CGG - chr1.2:20372255-20372274 None:intergenic 35.0%
! ATTTTGAACTCAGACCCATT+TGG - chr1.2:20371595-20371614 None:intergenic 35.0%
! GGTTTTCTTAGGTATTTGGA+TGG + chr1.2:20370978-20370997 MS.gene026344:intron 35.0%
! GTATTATCTGTTTCAGGTCA+TGG - chr1.2:20372736-20372755 None:intergenic 35.0%
!! AGCAGTTTTATAATGCAGGT+TGG + chr1.2:20372869-20372888 MS.gene026344:CDS 35.0%
!! CAAGAGCAGTTTTATAATGC+AGG + chr1.2:20372865-20372884 MS.gene026344:CDS 35.0%
!! CTCTTTAAGTGGACTGTTTA+AGG + chr1.2:20371133-20371152 MS.gene026344:intron 35.0%
!! GACTGCATGTTTTTAATCCT+AGG + chr1.2:20372062-20372081 MS.gene026344:intron 35.0%
!! TGGTTGGAAGTCATTTTCAA+AGG + chr1.2:20372889-20372908 MS.gene026344:CDS 35.0%
!!! CCTCAATACTGTTTTGATCA+TGG + chr1.2:20371183-20371202 MS.gene026344:intron 35.0%
!!! CTTGCTTATCTGGTTTTCTT+AGG + chr1.2:20370967-20370986 MS.gene026344:intron 35.0%
!!! GTTTTATAATGCAGGTTGGT+TGG + chr1.2:20372873-20372892 MS.gene026344:CDS 35.0%
AATCTGACCCTCCTTTGTAT+TGG - chr1.2:20371705-20371724 None:intergenic 40.0%
ACATCGCTTAGACTTCCAAA+TGG + chr1.2:20371577-20371596 MS.gene026344:CDS 40.0%
CATCGCTTAGACTTCCAAAT+GGG + chr1.2:20371578-20371597 MS.gene026344:CDS 40.0%
CTCACCAACACTTCTAATTG+TGG - chr1.2:20372807-20372826 None:intergenic 40.0%
GCATCCTTGCAAAAAGTTTC+AGG + chr1.2:20371961-20371980 MS.gene026344:CDS 40.0%
GGAAATTCGTAGAGAGACAT+TGG + chr1.2:20371536-20371555 MS.gene026344:CDS 40.0%
TACTATTATCCCAGCCACAA+AGG + chr1.2:20372982-20373001 MS.gene026344:CDS 40.0%
TCTTGTATTAGTGCTACGCA+TGG + chr1.2:20371325-20371344 MS.gene026344:intron 40.0%
TGAAAGCCTCTTACACAGTT+AGG - chr1.2:20372432-20372451 None:intergenic 40.0%
TGTCTCTCTACGAATTTCCT+TGG - chr1.2:20371535-20371554 None:intergenic 40.0%
TGTTCTTGCAGATGATTCCA+AGG + chr1.2:20371515-20371534 MS.gene026344:intron 40.0%
TTTGGAAGTCTAAGCGATGT+TGG - chr1.2:20371577-20371596 None:intergenic 40.0%
! AAGGCCACAATTAGAAGTGT+TGG + chr1.2:20372800-20372819 MS.gene026344:CDS 40.0%
! CTTGCCTGAAACTTTTTGCA+AGG - chr1.2:20371968-20371987 None:intergenic 40.0%
! CTTTTTCTTGAGGGGTTGTT+GGG - chr1.2:20371860-20371879 None:intergenic 40.0%
! GGTATGATTGAGAGTACAAG+TGG - chr1.2:20371111-20371130 None:intergenic 40.0%
! TCTTTTTCTTGAGGGGTTGT+TGG - chr1.2:20371861-20371880 None:intergenic 40.0%
!! CACAATTAGAAGTGTTGGTG+AGG + chr1.2:20372805-20372824 MS.gene026344:CDS 40.0%
ACACCTCAAGGGACAAACAT+TGG + chr1.2:20371916-20371935 MS.gene026344:CDS 45.0%
AGTGAAACTAGGACTCCCAT+TGG - chr1.2:20372326-20372345 None:intergenic 45.0%
ATTAGTGCTACGCATGGCTT+TGG + chr1.2:20371331-20371350 MS.gene026344:intron 45.0%
CAAGTGTTCACTATGGACGT+GGG + chr1.2:20370603-20370622 MS.gene026344:CDS 45.0%
CTAATAGAAACTGTGGAGGC+CGG + chr1.2:20372233-20372252 MS.gene026344:CDS 45.0%
GAGGCTAATAGAAACTGTGG+AGG + chr1.2:20372229-20372248 MS.gene026344:intron 45.0%
GCAGAGGCTAATAGAAACTG+TGG + chr1.2:20372226-20372245 MS.gene026344:intron 45.0%
GTGAAACTAGGACTCCCATT+GGG - chr1.2:20372325-20372344 None:intergenic 45.0%
TAATAGAAACTGTGGAGGCC+GGG + chr1.2:20372234-20372253 MS.gene026344:CDS 45.0%
TCAAGTGTTCACTATGGACG+TGG + chr1.2:20370602-20370621 MS.gene026344:CDS 45.0%
TTGCCAATGTTTGTCCCTTG+AGG - chr1.2:20371922-20371941 None:intergenic 45.0%
! ACGATGTTTGGCTTCAGAAC+TGG + chr1.2:20371635-20371654 MS.gene026344:CDS 45.0%
! TTTGGCTTCAGAACTGGAAG+AGG + chr1.2:20371641-20371660 MS.gene026344:CDS 45.0%
!! TAGAAGTGTTGGTGAGGACA+GGG + chr1.2:20372811-20372830 MS.gene026344:CDS 45.0%
!! TTAGAAGTGTTGGTGAGGAC+AGG + chr1.2:20372810-20372829 MS.gene026344:CDS 45.0%
AATAGAAACTGTGGAGGCCG+GGG + chr1.2:20372235-20372254 MS.gene026344:CDS 50.0%
TACAACGCGGTGACGATGTT+TGG + chr1.2:20371623-20371642 MS.gene026344:CDS 50.0%
TACGTAAATACAGCGGGCCT+AGG - chr1.2:20372082-20372101 None:intergenic 50.0%
! ACTAGTGCTGCTACACCTCA+AGG + chr1.2:20371904-20371923 MS.gene026344:CDS 50.0%
! CTAGTGCTGCTACACCTCAA+GGG + chr1.2:20371905-20371924 MS.gene026344:CDS 50.0%
CTCTGGGCATGGTTCCTTTG+TGG - chr1.2:20372999-20373018 None:intergenic 55.0%
GGACGTGGGAGTGAAGCTAA+GGG + chr1.2:20370617-20370636 MS.gene026344:CDS 55.0%
GGCATGGTTCCTTTGTGGCT+GGG - chr1.2:20372994-20373013 None:intergenic 55.0%
TGGACGTGGGAGTGAAGCTA+AGG + chr1.2:20370616-20370635 MS.gene026344:CDS 55.0%
TTTGCGCGCTCTCTCAGATG+TGG + chr1.2:20371664-20371683 MS.gene026344:CDS 55.0%
GGGCATGGTTCCTTTGTGGC+TGG - chr1.2:20372995-20373014 None:intergenic 60.0%
! GTGTTGGTGAGGACAGGGCA+TGG + chr1.2:20372816-20372835 MS.gene026344:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 20370599 20373028 20370599 ID=MS.gene026344
chr1.2 mRNA 20370599 20373028 20370599 ID=MS.gene026344.t1;Parent=MS.gene026344
chr1.2 exon 20370599 20370691 20370599 ID=MS.gene026344.t1.exon1;Parent=MS.gene026344.t1
chr1.2 CDS 20370599 20370691 20370599 ID=cds.MS.gene026344.t1;Parent=MS.gene026344.t1
chr1.2 exon 20371526 20371982 20371526 ID=MS.gene026344.t1.exon2;Parent=MS.gene026344.t1
chr1.2 CDS 20371526 20371982 20371526 ID=cds.MS.gene026344.t1;Parent=MS.gene026344.t1
chr1.2 exon 20372230 20372387 20372230 ID=MS.gene026344.t1.exon3;Parent=MS.gene026344.t1
chr1.2 CDS 20372230 20372387 20372230 ID=cds.MS.gene026344.t1;Parent=MS.gene026344.t1
chr1.2 exon 20372749 20373028 20372749 ID=MS.gene026344.t1.exon4;Parent=MS.gene026344.t1
chr1.2 CDS 20372749 20373028 20372749 ID=cds.MS.gene026344.t1;Parent=MS.gene026344.t1
Gene Sequence

>MS.gene026344

ATGTCAAGTGTTCACTATGGACGTGGGAGTGAAGCTAAGGGAATGCATTTTTACCAAACCATTCAACTTTGTGAATTGCAGGATGAAGAGCTTGTAAGCATTCTCAACTCAGCTTCTTCTTTTTTCCATTTCATTCATTCTTTCGATTATTGAAGTAGCTTTTGTAATTGTGTATCACACTATTTGTTGAAAACAAAACGACCCATTTTAATCATTGACCCAATTTAATTATTGAATAAACTTTGTTATCGGAATTAATGAATACGAAGATTTGAATGTTGGTAAACTCATACATAGTTTTTCTCACATGGAGAATCAAATGCTATATTTCTTATAATTGCTTTGATTTGATGGAGGAATGTTGCATACTTGCTTATCTGGTTTTCTTAGGTATTTGGATGGAGAGTGTCTCAACCCAATTTCTACCTAAAATTTTGACACTAAAAACAAACAGCCATGTACGGATTTATTATCATTAATGGAATTCATCATTTGGTGGAGCTCGTTAACCACTTGTACTCTCAATCATACCAACTCTTTAAGTGGACTGTTTAAGGTCTGTAGTCAATGTGTTTGATGAAAACCCTCAATACTGTTTTGATCATGGTTTCTGTTTAAGAACTAATTTGAGAGCAGTTTTTGAAATTAAATTCATGGAGGAATGTTGCATACTTGCATCATGAGATGACTTGTGTGTATCTACTAGACTTCCAATTACTTCAGATTTCTTGTATTAGTGCTACGCATGGCTTTGGTTCTAAACTCATTTTGTTTGATACATATATGCTTTGGTCCCAACACAGTTTGCTTAATCAGTCGGTGTATTAATTGAATGAAGTTTGCTGCATTAATCACTTGATGTATGCTTTGCTGCATTAATCTTCATTTCTAATTGAAACTCATTGGTTTTTGAAAATGTTCTTGCAGATGATTCCAAGGAAATTCGTAGAGAGACATTGGAAAGATGTATCAAATCCAACATCGCTTAGACTTCCAAATGGGTCTGAGTTCAAAATGAATTGGGTACAACGCGGTGACGATGTTTGGCTTCAGAACTGGAAGAGGTTTGCGCGCTCTCTCAGATGTGGAGATCTTTTAGTTTTCCAATACAAAGGAGGGTCAGATTTTCATGTCATTATATTGGATGATAGTAGTTTGGAAATTGACTATTCATGTATGAGATGCAATGATGAACAAGAAGCTAAGGAGAGTGATGAAGATGATGACTGTGTTGAGATTCCGAATGATCATGAAAATACCCAACAACCCCTCAAGAAAAAGAAAATCAACTCAAATGACATTGCTACTAGTGCTGCTACACCTCAAGGGACAAACATTGGCAAGAGAAAAATTAATATCAATGCATCCTTGCAAAAAGTTTCAGGCAAGTAAATGCAACATTGACAAAAATGTTATTAGGCATTCTATCCACTTTTTAATGCATACAAATTACAATAGTGCATGACTGCATGTTTTTAATCCTAGGCCCGCTGTATTTACGTATTTTTTAATTTTTTAACATTTAATTATTTTTCAAGACTGCCATTAAAAATCAAGACGTGAACTTTTATTAGTTTTTTGAAGTTTTTAAAGACTTTCAAATGCTGAAAATAGTTTTTAAAGTTTTGCAGAGGCTAATAGAAACTGTGGAGGCCGGGGTAAGAAAGCTAAGAAATGCACAAAAACTAAAGATAGGAATGAGAGAAGTTTCACAAATTATCATCCCAATGGGAGTCCTAGTTTCACTGTCAAATTATCGCCATATCACATTGAAGGTTATAATAGATTGGTATGTTTGCTTTACTTTTTTTTTTTCCAGCAATATTTGTACCTAACTGTGTAAGAGGCTTTCATTTTTCTATAGGAACTGAATGTATCGAAATTACAAACAAATCCCCAAATGTTTCTCTTGTAAATAGTCTTATTGAATAAATTTACTAACAGAAAACATATTCAAGGACTAATGTCAATTTATTCAATAAAAGAGAAAAAGTATAGCTAACATACTAAAGACACATTTGAAAATCAAAATAAGTAACAATAGAGACATTTAGGTATATTTTAATTATTGGTTTGACAGCCATGCACGTTACATATACTTATTGAATATATTTTAAGTAATATCTATTTTAAACCATGACCTGAAACAGATAATACCTAGATGGTTTTCGAAAGAATACATGAATGAGTTATTGCAACAGAAGGCCACAATTAGAAGTGTTGGTGAGGACAGGGCATGGTACGTGACGTTATACTTTGATAAAAGCAAGAGCAGTTTTATAATGCAGGTTGGTTGGAAGTCATTTTCAAAGGAACATGACTTGAAAGTTGGTGATGTATGTAAATTTGAGATGACTCAACGCAAACCACTTTCATTCACAATTACTATTATCCCAGCCACAAAGGAACCATGCCCAGAGCAGTTTCAAG
Protein sequence

>MS.gene026344.t1

MSSVHYGRGSEAKGMHFYQTIQLCELQDEELMIPRKFVERHWKDVSNPTSLRLPNGSEFKMNWVQRGDDVWLQNWKRFARSLRCGDLLVFQYKGGSDFHVIILDDSSLEIDYSCMRCNDEQEAKESDEDDDCVEIPNDHENTQQPLKKKKINSNDIATSAATPQGTNIGKRKININASLQKVSEANRNCGGRGKKAKKCTKTKDRNERSFTNYHPNGSPSFTVKLSPYHIEGYNRLIIPRWFSKEYMNELLQQKATIRSVGEDRAWYVTLYFDKSKSSFIMQVGWKSFSKEHDLKVGDVCKFEMTQRKPLSFTITIIPATKEPCPEQFQ