AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026340.t1 MTR_6g061070 68.203 217 31 1 80 258 229 445 6.50e-96 290
MS.gene026340.t1 MTR_6g061070 76.404 89 21 0 3 91 1 89 8.61e-44 154
MS.gene026340.t1 MTR_1g035480 80.682 88 17 0 4 91 1 88 1.65e-47 156
MS.gene026340.t1 MTR_1g033740 74.713 87 22 0 5 91 7 93 7.23e-43 145
MS.gene026340.t1 MTR_1g035500 71.264 87 25 0 5 91 10 96 1.20e-42 144
MS.gene026340.t1 MTR_1g035540 56.897 116 37 2 95 210 1 103 1.39e-35 124
MS.gene026340.t1 MTR_1g035520 75.641 78 18 1 183 259 282 359 1.12e-33 125
MS.gene026340.t1 MTR_1g035520 77.193 57 13 0 35 91 87 143 9.16e-25 102
MS.gene026340.t1 MTR_1g035470 78.947 57 12 0 35 91 1 57 3.82e-26 100
MS.gene026340.t1 MTR_1g035570 37.143 175 99 5 88 259 204 370 8.31e-24 99.4
MS.gene026340.t1 MTR_1g035570 42.188 64 36 1 29 91 14 77 9.88e-12 64.7
MS.gene026340.t1 MTR_1g035510 68.421 57 18 0 35 91 1 57 5.36e-22 91.3
MS.gene026340.t1 MTR_1g035490 32.642 193 98 7 93 259 118 304 4.79e-20 88.2
MS.gene026340.t1 MTR_1g035640 46.392 97 50 2 88 184 197 291 2.60e-18 84.3
MS.gene026340.t1 MTR_1g035640 50.000 64 31 1 29 91 14 77 1.42e-15 76.3
MS.gene026340.t1 MTR_1g035620 44.595 74 40 1 16 88 5 78 7.71e-16 77.0
MS.gene026340.t1 MTR_1g035620 30.392 204 114 5 81 259 185 385 7.78e-16 77.0
MS.gene026340.t1 MTR_1g050845 43.243 74 41 1 16 88 5 78 1.05e-15 77.0
MS.gene026340.t1 MTR_1g050845 30.556 180 90 4 88 238 180 353 3.63e-15 75.5
MS.gene026340.t1 MTR_1g035650 40.260 77 45 1 16 91 5 81 1.96e-14 70.5
MS.gene026340.t1 MTR_4g119990 42.857 77 42 2 15 89 10 86 1.87e-13 69.7
MS.gene026340.t1 MTR_5g044670 31.159 138 70 5 64 185 187 315 2.89e-11 63.2
MS.gene026340.t1 MTR_6g043890 37.179 78 47 2 14 89 9 86 6.62e-11 62.0
MS.gene026340.t1 MTR_7g050560 38.272 81 47 2 14 91 7 87 8.58e-11 61.6
MS.gene026340.t1 MTR_1g035440 33.333 99 63 2 17 112 12 110 9.49e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 53 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTCACATGACAAATTTA+AGG 0.173779 1.2:+20322443 MS.gene026340:CDS
TATAATCCATACCTCGATTA+TGG 0.210635 1.2:+20322675 MS.gene026340:CDS
TTGCATTCTCTCACGAATTC+TGG 0.238243 1.2:-20322717 None:intergenic
TTAAACAGAGGATACCTATT+TGG 0.252919 1.2:+20321606 MS.gene026340:intron
GGGAATGGTTTCTTTGTTGT+TGG 0.314235 1.2:-20321857 None:intergenic
TTTGGAAGTCTAAGCGATAT+TGG 0.316363 1.2:-20321440 None:intergenic
GGTCTGAGTTCAAAATGAAT+TGG 0.350012 1.2:+20321465 MS.gene026340:CDS
TACAACGCGGTGACGATGTT+TGG 0.370214 1.2:+20321489 MS.gene026340:CDS
GAAATACCTTGAAAATGCTC+TGG 0.394859 1.2:-20321878 None:intergenic
ACGATGTTTGGCTTCAGAAT+TGG 0.404471 1.2:+20321501 MS.gene026340:CDS
TTGGAAGTGTTGGTGAGGAC+AGG 0.439735 1.2:+20321675 MS.gene026340:CDS
ATAATCCATACCTCGATTAT+GGG 0.450089 1.2:+20322676 MS.gene026340:CDS
GTCTGAGTTCAAAATGAATT+GGG 0.455385 1.2:+20321466 MS.gene026340:CDS
ATAGTAATTGTGAATGAAAG+TGG 0.456460 1.2:-20321830 None:intergenic
AAGGAACATGACTTGAAAGT+TGG 0.470859 1.2:+20321773 MS.gene026340:CDS
TGTCTCTCTACGAATTTCCT+TGG 0.471061 1.2:-20321398 None:intergenic
ATTCAGTGGAGTTGAAAGTA+GGG 0.477979 1.2:+20322625 MS.gene026340:CDS
AGGAACATGGTTTGTAGAGG+TGG 0.484845 1.2:+20322650 MS.gene026340:CDS
CCTTGAAAATGCTCTGGGAA+TGG 0.485126 1.2:-20321872 None:intergenic
GATTATGGGTGGTTCACTAA+AGG 0.486734 1.2:+20322690 MS.gene026340:CDS
GGAACATGGTTTGTAGAGGT+GGG 0.494808 1.2:+20322651 MS.gene026340:CDS
TGAAAGTAGGGGAAGGAACA+TGG 0.498346 1.2:+20322637 MS.gene026340:CDS
TTGCGAGGGAAGGCAACGAT+TGG 0.514402 1.2:+20321656 MS.gene026340:CDS
GATTCAGTGGAGTTGAAAGT+AGG 0.514511 1.2:+20322624 MS.gene026340:CDS
ATATCGCTTAGACTTCCAAA+TGG 0.516695 1.2:+20321443 MS.gene026340:CDS
TTCAGTGGAGTTGAAAGTAG+GGG 0.529294 1.2:+20322626 MS.gene026340:CDS
GGAAATTCGTAGAGAGACAT+TGG 0.530097 1.2:+20321402 MS.gene026340:CDS
TTATGCCTCTTCAACAGACT+TGG 0.532458 1.2:-20322588 None:intergenic
TACTGCCAAGTCTGTTGAAG+AGG 0.535316 1.2:+20322583 MS.gene026340:CDS
TATATTTAGCGGAGATTCAG+TGG 0.538001 1.2:+20322611 MS.gene026340:CDS
AAGAGGCATAATATATTTAG+CGG 0.538890 1.2:+20322600 MS.gene026340:CDS
AAATACCTTGAAAATGCTCT+GGG 0.549451 1.2:-20321877 None:intergenic
AACCACCCATAATCGAGGTA+TGG 0.557688 1.2:-20322681 None:intergenic
TGTTCTTGCAGATGATTCCA+AGG 0.559130 1.2:+20321381 MS.gene026340:intron
TTTGGCTTCAGAATTGGAAG+AGG 0.559399 1.2:+20321507 MS.gene026340:CDS
TATCGCTTAGACTTCCAAAT+GGG 0.562651 1.2:+20321444 MS.gene026340:CDS
TGGAAGTGTTGGTGAGGACA+GGG 0.564743 1.2:+20321676 MS.gene026340:CDS
AAGGCAACGATTGGAAGTGT+TGG 0.567276 1.2:+20321665 MS.gene026340:CDS
ATGGGTGGTTCACTAAAGGT+TGG 0.570183 1.2:+20322694 MS.gene026340:CDS
TTTGCGCGCTCTCTCAGATG+TGG 0.586381 1.2:+20321530 MS.gene026340:CDS
GGACGTGGCAGTGAAGCTCA+TGG 0.611140 1.2:+20320342 MS.gene026340:CDS
GGAAGGAACATGGTTTGTAG+AGG 0.613086 1.2:+20322647 MS.gene026340:CDS
TACATGAATGAGTTATTGCG+AGG 0.621321 1.2:+20321641 MS.gene026340:CDS
AACGATTGGAAGTGTTGGTG+AGG 0.627439 1.2:+20321670 MS.gene026340:CDS
TCGAGTGTTCACAATGGACG+TGG 0.628713 1.2:+20320327 MS.gene026340:CDS
ATCCATACCTCGATTATGGG+TGG 0.639230 1.2:+20322679 MS.gene026340:CDS
GAATGAGTTATTGCGAGGGA+AGG 0.643476 1.2:+20321646 MS.gene026340:CDS
GTGGAGTTGAAAGTAGGGGA+AGG 0.644645 1.2:+20322630 MS.gene026340:CDS
GTGTTGGTGAGGACAGGGCA+TGG 0.648324 1.2:+20321681 MS.gene026340:CDS
ACATGAATGAGTTATTGCGA+GGG 0.670475 1.2:+20321642 MS.gene026340:CDS
TAGTGAACCACCCATAATCG+AGG 0.694278 1.2:-20322686 None:intergenic
ATGATGTCGAGTGTTCACAA+TGG 0.758516 1.2:+20320321 MS.gene026340:CDS
AAAATGAATTGGGTACAACG+CGG 0.771281 1.2:+20321476 MS.gene026340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAATTCTTAAATAAATTA+TGG + chr1.2:20323948-20323967 MS.gene026340:intron 10.0%
!! AAATGAATGAATAAGAAAAA+AGG - chr1.2:20320439-20320458 None:intergenic 15.0%
!! AACAAAAATAGATTGAAATT+TGG - chr1.2:20322982-20323001 None:intergenic 15.0%
!! AATTCTTAAATAAATTATGG+AGG + chr1.2:20323951-20323970 MS.gene026340:intron 15.0%
!! ACAAAAATAGATTGAAATTT+GGG - chr1.2:20322981-20323000 None:intergenic 15.0%
!! TCTATTATTAGTATTAGATT+CGG + chr1.2:20323753-20323772 MS.gene026340:intron 15.0%
!! TTTCTTATAATAATTGAGAA+TGG + chr1.2:20321098-20321117 MS.gene026340:intron 15.0%
!!! AAAATTTTCATGATATAAAG+TGG - chr1.2:20323173-20323192 None:intergenic 15.0%
!!! TTATAATTTCTTTGATTTCA+TGG + chr1.2:20320771-20320790 MS.gene026340:intron 15.0%
!! ATAGCATATCAATAACAAAA+TGG - chr1.2:20322146-20322165 None:intergenic 20.0%
!! ATATCAATAACAAAATGGAT+TGG - chr1.2:20322141-20322160 None:intergenic 20.0%
!! ATCAATATCTATTTAAACAG+AGG + chr1.2:20321594-20321613 MS.gene026340:intron 20.0%
!! ATGTATAAAGTAGTTAATGA+TGG + chr1.2:20323304-20323323 MS.gene026340:intron 20.0%
!! CAAAAATAGATTGAAATTTG+GGG - chr1.2:20322980-20322999 None:intergenic 20.0%
!! TACGGATTTATTATCATTAA+CGG + chr1.2:20320988-20321007 MS.gene026340:intron 20.0%
!! TTTATTATCATTAACGGAAT+TGG + chr1.2:20320994-20321013 MS.gene026340:intron 20.0%
!!! ATCTTCCTCAAATTTTTTAT+AGG + chr1.2:20324055-20324074 MS.gene026340:intron 20.0%
!!! ATTTGATTGATAGTAAACTT+CGG - chr1.2:20323934-20323953 None:intergenic 20.0%
!!! ATTTTAAGCAATGTATTGAT+TGG - chr1.2:20320645-20320664 None:intergenic 20.0%
!!! CAACAATGATATTTTGTTAT+TGG + chr1.2:20320668-20320687 MS.gene026340:intron 20.0%
!!! GGTTCTGAAATTTTAAATTT+TGG - chr1.2:20322959-20322978 None:intergenic 20.0%
!!! TATTCTTTTGAAAACCAAAT+AGG - chr1.2:20321623-20321642 None:intergenic 20.0%
!!! TCTTCCTCAAATTTTTTATA+GGG + chr1.2:20324056-20324075 MS.gene026340:intron 20.0%
!!! TTATTACAGGGTTTTAAAAA+TGG - chr1.2:20320476-20320495 None:intergenic 20.0%
! AACAAAGAAAACATTGTGTA+AGG - chr1.2:20322396-20322415 None:intergenic 25.0%
! AAGGTTTCAATTATTCTAGA+TGG + chr1.2:20322802-20322821 MS.gene026340:intron 25.0%
! AATGATAATAAATCCGTACA+TGG - chr1.2:20320986-20321005 None:intergenic 25.0%
! ACATGAAAGGTTATTATTAC+AGG - chr1.2:20320489-20320508 None:intergenic 25.0%
! AGACACAAAAAATAGATAGT+GGG - chr1.2:20323352-20323371 None:intergenic 25.0%
! AGTAGTATGTTTACATTACA+TGG - chr1.2:20322045-20322064 None:intergenic 25.0%
! ATAAAGTAGTTAATGATGGT+GGG + chr1.2:20323308-20323327 MS.gene026340:intron 25.0%
! ATAGTAATTGTGAATGAAAG+TGG - chr1.2:20321833-20321852 None:intergenic 25.0%
! ATGACCAAAATCATTTGATA+CGG - chr1.2:20322921-20322940 None:intergenic 25.0%
! ATTCTATTGGACTTAAAATG+TGG + chr1.2:20320830-20320849 MS.gene026340:intron 25.0%
! CATAAATTGTTCTTCACAAA+TGG + chr1.2:20320727-20320746 MS.gene026340:intron 25.0%
! CATGAAAGGTTATTATTACA+GGG - chr1.2:20320488-20320507 None:intergenic 25.0%
! CATTACTAATTGAAACTCAT+TGG + chr1.2:20321348-20321367 MS.gene026340:intron 25.0%
! CTCTATAAATACTGCTAAAT+GGG - chr1.2:20323102-20323121 None:intergenic 25.0%
! GAATTCACATGACAAATTTA+AGG + chr1.2:20322443-20322462 MS.gene026340:CDS 25.0%
! GCGAAAAATATTATGATTGA+CGG + chr1.2:20323049-20323068 MS.gene026340:intron 25.0%
! GTTGTATATTTGCTTCAATT+TGG + chr1.2:20320855-20320874 MS.gene026340:intron 25.0%
! TAAAAACAAACAACCATGTA+CGG + chr1.2:20320970-20320989 MS.gene026340:intron 25.0%
! TACAAGAAATCTGAACTAAT+TGG - chr1.2:20321178-20321197 None:intergenic 25.0%
! TAGACACAAAAAATAGATAG+TGG - chr1.2:20323353-20323372 None:intergenic 25.0%
! TAGAGCAAAAGTTGTATATT+TGG - chr1.2:20322106-20322125 None:intergenic 25.0%
! TATAAAGTAGTTAATGATGG+TGG + chr1.2:20323307-20323326 MS.gene026340:intron 25.0%
! TATACAACTACTATGATTAC+AGG + chr1.2:20323722-20323741 MS.gene026340:intron 25.0%
! TATGTTTACATTACATGGAT+AGG - chr1.2:20322040-20322059 None:intergenic 25.0%
! TCAATCCTAAAAGCTATATA+TGG + chr1.2:20323829-20323848 MS.gene026340:intron 25.0%
! TGTTTGATACATATATGCTT+TGG + chr1.2:20321234-20321253 MS.gene026340:intron 25.0%
! TTCTAAATGAGACATATACA+TGG - chr1.2:20320619-20320638 None:intergenic 25.0%
! TTGGTTTCATTCTATTCTAT+TGG + chr1.2:20320817-20320836 MS.gene026340:intron 25.0%
! TTTGTCTTTATATCTCCAAA+TGG - chr1.2:20323266-20323285 None:intergenic 25.0%
!! AAGAGGCATAATATATTTAG+CGG + chr1.2:20322600-20322619 MS.gene026340:CDS 25.0%
!! ACTATCCATATATAGCTTTT+AGG - chr1.2:20323837-20323856 None:intergenic 25.0%
!! TAATTTCTTTGATTTCATGG+AGG + chr1.2:20320774-20320793 MS.gene026340:intron 25.0%
!! TATTGATGACTCTTAGAATT+GGG + chr1.2:20323794-20323813 MS.gene026340:intron 25.0%
!! TTATTGATGACTCTTAGAAT+TGG + chr1.2:20323793-20323812 MS.gene026340:intron 25.0%
!! TTTGATTGATAGTAAACTTC+GGG - chr1.2:20323933-20323952 None:intergenic 25.0%
!!! AAATTTTTTATAGGGGGTAA+AGG + chr1.2:20324064-20324083 MS.gene026340:intron 25.0%
!!! CTTCCTCAAATTTTTTATAG+GGG + chr1.2:20324057-20324076 MS.gene026340:intron 25.0%
!!! TTCCTCAAATTTTTTATAGG+GGG + chr1.2:20324058-20324077 MS.gene026340:intron 25.0%
!!! TTGATATGCTATTTTGTACA+TGG + chr1.2:20322154-20322173 MS.gene026340:intron 25.0%
AAATACCTTGAAAATGCTCT+GGG - chr1.2:20321880-20321899 None:intergenic 30.0%
ACATATTCCATATCTTCTAC+TGG - chr1.2:20322261-20322280 None:intergenic 30.0%
AGAGAATGCAAAGTAAAGAT+TGG + chr1.2:20322729-20322748 MS.gene026340:intron 30.0%
AGCAAAAGTTGTATATTTGG+TGG - chr1.2:20322103-20322122 None:intergenic 30.0%
AGCTAATTGAAACTTTGCTA+CGG + chr1.2:20323120-20323139 MS.gene026340:intron 30.0%
AGTAGAAGATATGGAATATG+TGG + chr1.2:20322260-20322279 MS.gene026340:intron 30.0%
ATAATCCATACCTCGATTAT+GGG + chr1.2:20322676-20322695 MS.gene026340:CDS 30.0%
ATACATGGTTGACTGAAAAT+GGG - chr1.2:20320604-20320623 None:intergenic 30.0%
ATATCTCCAAATGGAAGAAA+AGG - chr1.2:20323257-20323276 None:intergenic 30.0%
CAAAATCAATCATGTGTTCA+AGG + chr1.2:20322783-20322802 MS.gene026340:intron 30.0%
CATATAGAACTCACTATGTT+TGG - chr1.2:20323702-20323721 None:intergenic 30.0%
GCTCTATAAATACTGCTAAA+TGG - chr1.2:20323103-20323122 None:intergenic 30.0%
GTAAGTTCAAAGCTTGTATA+AGG - chr1.2:20323562-20323581 None:intergenic 30.0%
GTAGAAGATATGGAATATGT+GGG + chr1.2:20322261-20322280 MS.gene026340:intron 30.0%
GTCTGAGTTCAAAATGAATT+GGG + chr1.2:20321466-20321485 MS.gene026340:CDS 30.0%
TAAAACGCTAATCACATGAA+AGG - chr1.2:20320502-20320521 None:intergenic 30.0%
TACCCCCTATAAAAAATTTG+AGG - chr1.2:20324063-20324082 None:intergenic 30.0%
TATAATCCATACCTCGATTA+TGG + chr1.2:20322675-20322694 MS.gene026340:CDS 30.0%
TATACATGGTTGACTGAAAA+TGG - chr1.2:20320605-20320624 None:intergenic 30.0%
TATGTTTGGTTGTGAAACAT+TGG - chr1.2:20323688-20323707 None:intergenic 30.0%
TGGATTAAGCAAATGATTTG+TGG - chr1.2:20322083-20322102 None:intergenic 30.0%
TTAAACAGAGGATACCTATT+TGG + chr1.2:20321606-20321625 MS.gene026340:intron 30.0%
TTACAGATGTTGCAATGAAA+TGG - chr1.2:20323477-20323496 None:intergenic 30.0%
TTGCAATGAAATGGACAATA+AGG - chr1.2:20323468-20323487 None:intergenic 30.0%
TTTGCCAAAATGATCTTAAC+CGG + chr1.2:20323402-20323421 MS.gene026340:intron 30.0%
! GATTAAGCAAATGATTTGTG+GGG - chr1.2:20322081-20322100 None:intergenic 30.0%
! GGATTAAGCAAATGATTTGT+GGG - chr1.2:20322082-20322101 None:intergenic 30.0%
! GTAACCGTATCAAATGATTT+TGG + chr1.2:20322914-20322933 MS.gene026340:intron 30.0%
! GTATTAGATTCGGTAGAATT+TGG + chr1.2:20323763-20323782 MS.gene026340:intron 30.0%
! TTTTGTGACATCATTAGACA+AGG + chr1.2:20322467-20322486 MS.gene026340:CDS 30.0%
!! TTCTTTTGGGGAAGTTATAT+AGG - chr1.2:20323587-20323606 None:intergenic 30.0%
!!! ATAGCTTTTAGGATTGAATG+AGG - chr1.2:20323826-20323845 None:intergenic 30.0%
AAAATGAATTGGGTACAACG+CGG + chr1.2:20321476-20321495 MS.gene026340:CDS 35.0%
AAGGAACATGACTTGAAAGT+TGG + chr1.2:20321773-20321792 MS.gene026340:CDS 35.0%
ACATGAATGAGTTATTGCGA+GGG + chr1.2:20321642-20321661 MS.gene026340:CDS 35.0%
ACGTTGCATACTTGCTTATT+TGG + chr1.2:20320798-20320817 MS.gene026340:intron 35.0%
ACTGATTAAGCAAACTGTGT+TGG - chr1.2:20321262-20321281 None:intergenic 35.0%
ATAACTTCCCCAAAAGAAGA+GGG + chr1.2:20323589-20323608 MS.gene026340:intron 35.0%
ATATCGCTTAGACTTCCAAA+TGG + chr1.2:20321443-20321462 MS.gene026340:CDS 35.0%
ATTCAGTGGAGTTGAAAGTA+GGG + chr1.2:20322625-20322644 MS.gene026340:CDS 35.0%
CTAACAACAATATTAGGGAG+TGG - chr1.2:20322832-20322851 None:intergenic 35.0%
CTGATTAAGCAAACTGTGTT+GGG - chr1.2:20321261-20321280 None:intergenic 35.0%
GAAAAGGAGAGGAACATAAA+TGG - chr1.2:20323241-20323260 None:intergenic 35.0%
GAAATACCTTGAAAATGCTC+TGG - chr1.2:20321881-20321900 None:intergenic 35.0%
GGAGGCTAACAACAATATTA+GGG - chr1.2:20322837-20322856 None:intergenic 35.0%
GGTCTGAGTTCAAAATGAAT+TGG + chr1.2:20321465-20321484 MS.gene026340:CDS 35.0%
TAATTGAAACTTTGCTACGG+TGG + chr1.2:20323123-20323142 MS.gene026340:intron 35.0%
TACATGAATGAGTTATTGCG+AGG + chr1.2:20321641-20321660 MS.gene026340:CDS 35.0%
TACATGGTTGACTGAAAATG+GGG - chr1.2:20320603-20320622 None:intergenic 35.0%
TAGTTCTCCACTTAAAGAGT+TGG - chr1.2:20321077-20321096 None:intergenic 35.0%
TATAACTTCCCCAAAAGAAG+AGG + chr1.2:20323588-20323607 MS.gene026340:intron 35.0%
TATATTTAGCGGAGATTCAG+TGG + chr1.2:20322611-20322630 MS.gene026340:CDS 35.0%
TATCGCTTAGACTTCCAAAT+GGG + chr1.2:20321444-20321463 MS.gene026340:CDS 35.0%
TCGGAATCAAAAGAAGAAGT+TGG - chr1.2:20322196-20322215 None:intergenic 35.0%
TTGCAACATCTGTAATTGCA+TGG + chr1.2:20323482-20323501 MS.gene026340:intron 35.0%
TTTGGAAGTCTAAGCGATAT+TGG - chr1.2:20321443-20321462 None:intergenic 35.0%
TTTGTTCTTGTATATGCAGC+TGG + chr1.2:20322557-20322576 MS.gene026340:intron 35.0%
! ACACAGTTTGCTTAATCAGT+CGG + chr1.2:20321262-20321281 MS.gene026340:intron 35.0%
! ATGGAATATGTGGGCAATTT+TGG + chr1.2:20322270-20322289 MS.gene026340:intron 35.0%
! ATTTTGAACTCAGACCCATT+TGG - chr1.2:20321461-20321480 None:intergenic 35.0%
!! TGGTTGGAAGTCATTTTCAA+AGG + chr1.2:20321754-20321773 MS.gene026340:CDS 35.0%
AAGAGCTGCACAAAAACACA+TGG + chr1.2:20322306-20322325 MS.gene026340:intron 40.0%
AGATTCTCACACCACAATTG+TGG - chr1.2:20322875-20322894 None:intergenic 40.0%
ATGATGTCGAGTGTTCACAA+TGG + chr1.2:20320321-20320340 MS.gene026340:CDS 40.0%
ATTAGTGCTACGCATGACTT+TGG + chr1.2:20321197-20321216 MS.gene026340:intron 40.0%
CGGAGGCTAACAACAATATT+AGG - chr1.2:20322838-20322857 None:intergenic 40.0%
GATTATGGGTGGTTCACTAA+AGG + chr1.2:20322690-20322709 MS.gene026340:CDS 40.0%
GATTCAGTGGAGTTGAAAGT+AGG + chr1.2:20322624-20322643 MS.gene026340:CDS 40.0%
GCACAAAAACACATGGTCTA+AGG + chr1.2:20322313-20322332 MS.gene026340:intron 40.0%
GGAAATTCGTAGAGAGACAT+TGG + chr1.2:20321402-20321421 MS.gene026340:CDS 40.0%
GGTCATACCAACTCTTTAAG+TGG + chr1.2:20321067-20321086 MS.gene026340:intron 40.0%
GGTGTATGTTCTTCATAGAC+AGG + chr1.2:20323972-20323991 MS.gene026340:intron 40.0%
TAACTTCCCCAAAAGAAGAG+GGG + chr1.2:20323590-20323609 MS.gene026340:intron 40.0%
TCAATGCAGCAAAGCATACA+TGG - chr1.2:20320940-20320959 None:intergenic 40.0%
TCCAAATGGAAGAAAAGGAG+AGG - chr1.2:20323252-20323271 None:intergenic 40.0%
TGTCTCTCTACGAATTTCCT+TGG - chr1.2:20321401-20321420 None:intergenic 40.0%
TGTTCTTGCAGATGATTCCA+AGG + chr1.2:20321381-20321400 MS.gene026340:intron 40.0%
TTATGCCTCTTCAACAGACT+TGG - chr1.2:20322591-20322610 None:intergenic 40.0%
TTCAGTGGAGTTGAAAGTAG+GGG + chr1.2:20322626-20322645 MS.gene026340:CDS 40.0%
TTGCATTCTCTCACGAATTC+TGG - chr1.2:20322720-20322739 None:intergenic 40.0%
! ACCTTTTCCCCTCTTCTTTT+GGG - chr1.2:20323600-20323619 None:intergenic 40.0%
! ACGATGTTTGGCTTCAGAAT+TGG + chr1.2:20321501-20321520 MS.gene026340:CDS 40.0%
! CACACAAAGCGCTATATACA+TGG - chr1.2:20322517-20322536 None:intergenic 40.0%
! CCTTCTAGAAATGCACATCT+GGG + chr1.2:20323899-20323918 MS.gene026340:intron 40.0%
! GAAGCCGGTTAAGATCATTT+TGG - chr1.2:20323409-20323428 None:intergenic 40.0%
! GGGAATGGTTTCTTTGTTGT+TGG - chr1.2:20321860-20321879 None:intergenic 40.0%
! GTGGATAAAGTGTACTGACA+CGG + chr1.2:20323142-20323161 MS.gene026340:intron 40.0%
! TCCTCTCCTTTTCTTCCATT+TGG + chr1.2:20323248-20323267 MS.gene026340:intron 40.0%
! TTTGGCTTCAGAATTGGAAG+AGG + chr1.2:20321507-20321526 MS.gene026340:CDS 40.0%
!! AGCAGTTTTGTAATGCAGGT+TGG + chr1.2:20321734-20321753 MS.gene026340:CDS 40.0%
!! CAAGAGCAGTTTTGTAATGC+AGG + chr1.2:20321730-20321749 MS.gene026340:CDS 40.0%
!! TATGTGGGCAATTTTGGAGA+AGG + chr1.2:20322276-20322295 MS.gene026340:intron 40.0%
!!! CTCGTTGGTTTTCTGTATGT+CGG - chr1.2:20322215-20322234 None:intergenic 40.0%
!!! GTTTTGTAATGCAGGTTGGT+TGG + chr1.2:20321738-20321757 MS.gene026340:CDS 40.0%
AACCACCCATAATCGAGGTA+TGG - chr1.2:20322684-20322703 None:intergenic 45.0%
ACAGAAAACCAACGAGTCCA+AGG + chr1.2:20322219-20322238 MS.gene026340:intron 45.0%
ACCAAGTGATTGAGCACTAG+TGG - chr1.2:20321050-20321069 None:intergenic 45.0%
ACCACTAGTGCTCAATCACT+TGG + chr1.2:20321046-20321065 MS.gene026340:intron 45.0%
ATATGCAGTTGTTGCGAAGC+CGG - chr1.2:20323424-20323443 None:intergenic 45.0%
ATCCATACCTCGATTATGGG+TGG + chr1.2:20322679-20322698 MS.gene026340:CDS 45.0%
ATGGGTGGTTCACTAAAGGT+TGG + chr1.2:20322694-20322713 MS.gene026340:CDS 45.0%
GAATGAGTTATTGCGAGGGA+AGG + chr1.2:20321646-20321665 MS.gene026340:CDS 45.0%
GACAACGCCAGTAGAAGATA+TGG + chr1.2:20322251-20322270 MS.gene026340:intron 45.0%
GCTTCACACAACAAGCATCA+AGG - chr1.2:20323657-20323676 None:intergenic 45.0%
GGAGAGGAACATAAATGGAG+AGG - chr1.2:20323236-20323255 None:intergenic 45.0%
TACTGCCAAGTCTGTTGAAG+AGG + chr1.2:20322583-20322602 MS.gene026340:CDS 45.0%
TAGTGAACCACCCATAATCG+AGG - chr1.2:20322689-20322708 None:intergenic 45.0%
TGAAAGTAGGGGAAGGAACA+TGG + chr1.2:20322637-20322656 MS.gene026340:CDS 45.0%
TGATATCGCCACCACAATTG+TGG + chr1.2:20322861-20322880 MS.gene026340:intron 45.0%
TTCTCACACCACAATTGTGG+TGG - chr1.2:20322872-20322891 None:intergenic 45.0%
! AAGGCAACGATTGGAAGTGT+TGG + chr1.2:20321665-20321684 MS.gene026340:CDS 45.0%
! AGGAACATGGTTTGTAGAGG+TGG + chr1.2:20322650-20322669 MS.gene026340:CDS 45.0%
! ATAGAAAGCTAGCTTGCAGC+TGG - chr1.2:20323518-20323537 None:intergenic 45.0%
! CCCAGATGTGCATTTCTAGA+AGG - chr1.2:20323902-20323921 None:intergenic 45.0%
! CCTTTTCCCCTCTTCTTTTG+GGG - chr1.2:20323599-20323618 None:intergenic 45.0%
! CTGATTTTCCTTGGACTCGT+TGG - chr1.2:20322230-20322249 None:intergenic 45.0%
! GACCTTTTCCCCTCTTCTTT+TGG - chr1.2:20323601-20323620 None:intergenic 45.0%
! GATAAAGTGTACTGACACGG+TGG + chr1.2:20323145-20323164 MS.gene026340:intron 45.0%
! GCCTTCTAGAAATGCACATC+TGG + chr1.2:20323898-20323917 MS.gene026340:intron 45.0%
! GGAACATGGTTTGTAGAGGT+GGG + chr1.2:20322651-20322670 MS.gene026340:CDS 45.0%
! GGAAGGAACATGGTTTGTAG+AGG + chr1.2:20322647-20322666 MS.gene026340:CDS 45.0%
! TTGTGGTGGCGATATCATTG+CGG - chr1.2:20322858-20322877 None:intergenic 45.0%
!! AACGATTGGAAGTGTTGGTG+AGG + chr1.2:20321670-20321689 MS.gene026340:CDS 45.0%
!! CCATTCCCAGAGCATTTTCA+AGG + chr1.2:20321872-20321891 MS.gene026340:CDS 45.0%
!! CCTTGAAAATGCTCTGGGAA+TGG - chr1.2:20321875-20321894 None:intergenic 45.0%
!! TGATGGTGGGATCTACTTAG+TGG + chr1.2:20323321-20323340 MS.gene026340:intron 45.0%
!!! GCGTTGTCACTGATTTTCCT+TGG - chr1.2:20322239-20322258 None:intergenic 45.0%
CCCCAAAAGAAGAGGGGAAA+AGG + chr1.2:20323596-20323615 MS.gene026340:intron 50.0%
GGTGGGATCTACTTAGTGGT+AGG + chr1.2:20323325-20323344 MS.gene026340:intron 50.0%
GGTTAATGAGCGAATCGCTC+AGG - chr1.2:20321029-20321048 None:intergenic 50.0%
GTGGAGTTGAAAGTAGGGGA+AGG + chr1.2:20322630-20322649 MS.gene026340:CDS 50.0%
TACAACGCGGTGACGATGTT+TGG + chr1.2:20321489-20321508 MS.gene026340:CDS 50.0%
TCGAGTGTTCACAATGGACG+TGG + chr1.2:20320327-20320346 MS.gene026340:CDS 50.0%
!! TGGAAGTGTTGGTGAGGACA+GGG + chr1.2:20321676-20321695 MS.gene026340:CDS 50.0%
!! TTGGAAGTGTTGGTGAGGAC+AGG + chr1.2:20321675-20321694 MS.gene026340:CDS 50.0%
TTGCGAGGGAAGGCAACGAT+TGG + chr1.2:20321656-20321675 MS.gene026340:CDS 55.0%
TTTGCGCGCTCTCTCAGATG+TGG + chr1.2:20321530-20321549 MS.gene026340:CDS 55.0%
! TGGTGGCGATATCATTGCGG+AGG - chr1.2:20322855-20322874 None:intergenic 55.0%
GGACGTGGCAGTGAAGCTCA+TGG + chr1.2:20320342-20320361 MS.gene026340:CDS 60.0%
! GTGTTGGTGAGGACAGGGCA+TGG + chr1.2:20321681-20321700 MS.gene026340:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 20320315 20324091 20320315 ID=MS.gene026340
chr1.2 mRNA 20320315 20324091 20320315 ID=MS.gene026340.t1;Parent=MS.gene026340
chr1.2 exon 20320315 20320416 20320315 ID=MS.gene026340.t1.exon1;Parent=MS.gene026340.t1
chr1.2 CDS 20320315 20320416 20320315 ID=cds.MS.gene026340.t1;Parent=MS.gene026340.t1
chr1.2 exon 20321392 20321562 20321392 ID=MS.gene026340.t1.exon2;Parent=MS.gene026340.t1
chr1.2 CDS 20321392 20321562 20321392 ID=cds.MS.gene026340.t1;Parent=MS.gene026340.t1
chr1.2 exon 20321614 20321893 20321614 ID=MS.gene026340.t1.exon3;Parent=MS.gene026340.t1
chr1.2 CDS 20321614 20321893 20321614 ID=cds.MS.gene026340.t1;Parent=MS.gene026340.t1
chr1.2 exon 20322430 20322488 20322430 ID=MS.gene026340.t1.exon4;Parent=MS.gene026340.t1
chr1.2 CDS 20322430 20322488 20322430 ID=cds.MS.gene026340.t1;Parent=MS.gene026340.t1
chr1.2 exon 20322576 20322740 20322576 ID=MS.gene026340.t1.exon5;Parent=MS.gene026340.t1
chr1.2 CDS 20322576 20322740 20322576 ID=cds.MS.gene026340.t1;Parent=MS.gene026340.t1
chr1.2 exon 20324077 20324091 20324077 ID=MS.gene026340.t1.exon6;Parent=MS.gene026340.t1
chr1.2 CDS 20324077 20324091 20324077 ID=cds.MS.gene026340.t1;Parent=MS.gene026340.t1
Gene Sequence

>MS.gene026340

ATGAGCATGATGTCGAGTGTTCACAATGGACGTGGCAGTGAAGCTCATGGAATGCATTTCTATCTAACTATTCAACTTCGTCAGTTGCAAGATGCAGAGTTTGTAAGCATTTTCACTTCTTCCTTTTTTCTTATTCATTCATTTCTTTCGATTATTTTCCATTTTTAAAACCCTGTAATAATAACCTTTCATGTGATTAGCGTTTTAGTAAAGTTTATTCTTTCGATTATTTTAATTTTTACATTATTTAATAAACTTTGCTTCTTCTCAAGAAAAAAAAAAAAACCCCATTTTCAGTCAACCATGTATATGTCTCATTTAGAAGCACCAATCAATACATTGCTTAAAATTTGCAACAATGATATTTTGTTATTGGAATTGATGAATGTTAAGATTTGAAAGTTGTTAAATTCATAAATTGTTCTTCACAAATGGAGAATCAAATGCTATTATTTCTTATAATTTCTTTGATTTCATGGAGGAACGTTGCATACTTGCTTATTTGGTTTCATTCTATTCTATTGGACTTAAAATGTGGATGTTGTATATTTGCTTCAATTTGGTACTGTATTCAACTTCATTTTCATTATTCAATGAAGTTTGCTTCGTATTAAAATAACAACCATGTATGCTTTGCTGCATTGATCATCATTACTAAAAACAAACAACCATGTACGGATTTATTATCATTAACGGAATTGGTTTTTCGCTCCTGAGCGATTCGCTCATTAACCACTAGTGCTCAATCACTTGGTCATACCAACTCTTTAAGTGGAGAACTAATTTCTTATAATAATTGAGAATGGAATGTTGCACACATACTTGCATTATGAGATGACTTGTGTGCATCTACTTGACTTCCAATTAGTTCAGATTTCTTGTATTAGTGCTACGCATGACTTTGGTTCTAAACTCATTTTGTTTGATACATATATGCTTTGGTCCCAACACAGTTTGCTTAATCAGTCGGTGTATTAATTGAATGAAGTTTGCTGCATTAATCACTTGATGTATGCTTTGCTGCATTAATCTTCATTACTAATTGAAACTCATTGGTTTTTGAAAATGTTCTTGCAGATGATTCCAAGGAAATTCGTAGAGAGACATTGGAAAGATGTATCAAATCCAATATCGCTTAGACTTCCAAATGGGTCTGAGTTCAAAATGAATTGGGTACAACGCGGTGACGATGTTTGGCTTCAGAATTGGAAGAGGTTTGCGCGCTCTCTCAGATGTGGAGATCTTGTAGTAATATCACTTAGTTCATGAATAAATTTTAATCAATATCTATTTAAACAGAGGATACCTATTTGGTTTTCAAAAGAATACATGAATGAGTTATTGCGAGGGAAGGCAACGATTGGAAGTGTTGGTGAGGACAGGGCATGGTACGTGACGTTAAACTTTGATAAAAGCAAGAGCAGTTTTGTAATGCAGGTTGGTTGGAAGTCATTTTCAAAGGAACATGACTTGAAAGTTGGTGATGTATGTAAATTTGATACGACTCAACGCGAACCACTTTCATTCACAATTACTATTATTCCAACAACAAAGAAACCATTCCCAGAGCATTTTCAAGGTATTTCTTTCATTATTATTATTTTCGAAAGATAAATGTTTTAATATAGTTAATTTTAATACATTTTATCAAAGTAAATAGTTTTAACTTGTCAACAAATAACAAACAATCATGTGTAATTTTTTTTTAAGATTTAAGTAATACCTATCCATGTAATGTAAACATACTACTCTTTGCTTTTAATCCCCACAAATCATTTGCTTAATCCACCAAATATACAACTTTTGCTCTACAACTCAACTTACCAATCCATTTTGTTATTGATATGCTATTTTGTACATGGCATTAGTAGATTTTCTCCAACTTCTTCTTTTGATTCCGACATACAGAAAACCAACGAGTCCAAGGAAAATCAGTGACAACGCCAGTAGAAGATATGGAATATGTGGGCAATTTTGGAGAAGGAAATTCAAAGAGCTGCACAAAAACACATGGTCTAAGGAGTATTCATCTTAATTTTATTTGTTGAAGTTTTATTGTGTACAATTCATGCAAATATCCTTACACAATGTTTTCTTTGTTCTTAATTACTGCAGATTCTGTAAGTACGAATTCACATGACAAATTTAAGGTTTTTGTGACATCATTAGACAAGGTATGAATAACATAAAATGTTGATACCATGTATATAGCGCTTTGTGTGTGAATGTGAATTTTTTTTAATTTGTTCTTGTATATGCAGCTGGTTGTACTGCCAAGTCTGTTGAAGAGGCATAATATATTTAGCGGAGATTCAGTGGAGTTGAAAGTAGGGGAAGGAACATGGTTTGTAGAGGTGGGTTATAATCCATACCTCGATTATGGGTGGTTCACTAAAGGTTGGCCAGAATTCGTGAGAGAATGCAAAGTAAAGATTGGAGACACTTGTTTGTTTGAGATGATTGATGTTCAAAATCAATCATGTGTTCAAGGTTTCAATTATTCTAGATGGAAAGCCACTCCCTAATATTGTTGTTAGCCTCCGCAATGATATCGCCACCACAATTGTGGTGTGAGAATCTGTCACGTGTACGATGAATCGTAACCGTATCAAATGATTTTGGTCATATTCAAATCTTTTCACCAAAATTTAAAATTTCAGAACCCCAAATTTCAATCTATTTTTGTTCTATTGACAAATATTATGATTGACAGTCACTCAACTCTGTATTTCAAGCGAAAAATATTATGATTGACGGTCTCTCAACTCTGTATTTCAAGCACATCCCATTTAGCAGTATTTATAGAGCTAATTGAAACTTTGCTACGGTGGATAAAGTGTACTGACACGGTGGTGCCACTTTATATCATGAAAATTTTAAATTATTGCATAGCAATGTGCTTCACTTTGAGTGAAGATCCTCTCCATTTATGTTCCTCTCCTTTTCTTCCATTTGGAGATATAAAGACAAAAAAAAAAAATTTGAAAAAATGTATAAAGTAGTTAATGATGGTGGGATCTACTTAGTGGTAGGACCCACTATCTATTTTTTGTGTCTATCTCTCTTCAAATTGCATCTTCTATTTATTTTGCCAAAATGATCTTAACCGGCTTCGCAACAACTGCATATGCAAACATGATTTAACGACAACCTTATTGTCCATTTCATTGCAACATCTGTAATTGCATGGACTCTTGATACCAGCTGCAAGCTAGCTTTCTATCATTTCAAACACTAATATAATCCTTATACAAGCTTTGAACTTACATCCTATATAACTTCCCCAAAAGAAGAGGGGAAAAGGTCAATATTTTTGAAGTATTGTAGACTTTGCGTGTGCCTTGATGCTTGTTGTGTGAAGCAAGCATGACCAATGTTTCACAACCAAACATAGTGAGTTCTATATGTATACAACTACTATGATTACAGGTTTGATTCTCTATTATTAGTATTAGATTCGGTAGAATTTGGAACTTTATTATTGATGACTCTTAGAATTGGGTTTGTACCTCATTCAATCCTAAAAGCTATATATGGATAGTGAATTTTTTTAGCGTTGTTTTTTTTTTTTTTTTTTTTTTTTGCCTTCTAGAAATGCACATCTGGGAGATAACTCCCGAAGTTTACTATCAATCAAATTCTTAAATAAATTATGGAGGTGTATGTTCTTCATAGACAGGTTATGCATTACATTCAATTCAAATTCAATAAATAAATTCTAATAGTACAAAGTACTAAACATCTTCCTCAAATTTTTTATAGGGGGTAAAGGCTTAG
Protein sequence

>MS.gene026340.t1

MSMMSSVHNGRGSEAHGMHFYLTIQLRQLQDAEFMIPRKFVERHWKDVSNPISLRLPNGSEFKMNWVQRGDDVWLQNWKRFARSLRCGDLVRIPIWFSKEYMNELLRGKATIGSVGEDRAWYVTLNFDKSKSSFVMQVGWKSFSKEHDLKVGDVCKFDTTQREPLSFTITIIPTTKKPFPEHFQDSVSTNSHDKFKVFVTSLDKLVVLPSLLKRHNIFSGDSVELKVGEGTWFVEVGYNPYLDYGWFTKGWPEFVRECKGVKA