Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052883.t1 | KEH40807.1 | 83.1 | 421 | 30 | 5 | 1 | 392 | 1 | 409 | 2.40E-195 | 691.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052883.t1 | Q8L3W1 | 29.0 | 124 | 86 | 1 | 9 | 130 | 6 | 129 | 1.0e-08 | 62.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052883.t1 | A0A072VG97 | 83.1 | 421 | 30 | 5 | 1 | 392 | 1 | 409 | 1.7e-195 | 691.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene052883.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052883.t1 | MTR_1g035620 | 83.135 | 421 | 30 | 5 | 1 | 392 | 1 | 409 | 0.0 | 691 |
| MS.gene052883.t1 | MTR_1g050845 | 75.773 | 388 | 41 | 5 | 1 | 359 | 1 | 364 | 0.0 | 560 |
| MS.gene052883.t1 | MTR_1g035570 | 46.283 | 417 | 174 | 12 | 1 | 391 | 1 | 393 | 9.45e-111 | 330 |
| MS.gene052883.t1 | MTR_1g035640 | 50.515 | 291 | 125 | 7 | 1 | 282 | 1 | 281 | 1.90e-88 | 275 |
| MS.gene052883.t1 | MTR_1g035650 | 58.491 | 212 | 64 | 5 | 1 | 197 | 1 | 203 | 6.57e-70 | 219 |
| MS.gene052883.t1 | MTR_6g061070 | 33.781 | 447 | 221 | 10 | 17 | 391 | 26 | 469 | 4.66e-65 | 215 |
| MS.gene052883.t1 | MTR_1g035490 | 41.637 | 281 | 124 | 10 | 140 | 391 | 58 | 327 | 6.59e-53 | 179 |
| MS.gene052883.t1 | MTR_5g044670 | 31.894 | 301 | 178 | 7 | 3 | 282 | 10 | 304 | 2.44e-37 | 138 |
| MS.gene052883.t1 | MTR_7g050710 | 30.743 | 296 | 183 | 8 | 6 | 279 | 10 | 305 | 1.81e-32 | 124 |
| MS.gene052883.t1 | MTR_7g050580 | 30.640 | 297 | 165 | 10 | 6 | 279 | 10 | 288 | 5.20e-32 | 123 |
| MS.gene052883.t1 | MTR_1g033740 | 43.671 | 158 | 77 | 4 | 9 | 156 | 22 | 177 | 8.40e-32 | 119 |
| MS.gene052883.t1 | MTR_3g098790 | 29.664 | 327 | 201 | 13 | 6 | 311 | 10 | 328 | 5.27e-31 | 120 |
| MS.gene052883.t1 | MTR_7g050560 | 28.956 | 297 | 170 | 8 | 6 | 279 | 10 | 288 | 2.54e-29 | 116 |
| MS.gene052883.t1 | MTR_7g050720 | 29.032 | 310 | 175 | 9 | 6 | 278 | 7 | 308 | 1.30e-27 | 111 |
| MS.gene052883.t1 | MTR_1g035480 | 38.462 | 169 | 89 | 4 | 2 | 156 | 3 | 170 | 5.75e-27 | 106 |
| MS.gene052883.t1 | MTR_1g035500 | 35.802 | 162 | 93 | 3 | 5 | 156 | 21 | 181 | 6.15e-26 | 103 |
| MS.gene052883.t1 | MTR_8g103940 | 26.791 | 321 | 169 | 8 | 2 | 279 | 32 | 329 | 3.34e-24 | 104 |
| MS.gene052883.t1 | MTR_6g043890 | 28.231 | 294 | 159 | 10 | 9 | 267 | 15 | 291 | 5.58e-24 | 102 |
| MS.gene052883.t1 | MTR_1g035510 | 37.143 | 140 | 79 | 3 | 25 | 156 | 2 | 140 | 6.33e-24 | 99.0 |
| MS.gene052883.t1 | MTR_7g050590 | 26.032 | 315 | 177 | 8 | 25 | 302 | 2 | 297 | 3.80e-23 | 98.6 |
| MS.gene052883.t1 | MTR_1g035520 | 27.124 | 306 | 161 | 10 | 25 | 279 | 88 | 382 | 9.33e-23 | 99.0 |
| MS.gene052883.t1 | MTR_4g119990 | 25.723 | 311 | 190 | 11 | 9 | 286 | 15 | 317 | 6.77e-22 | 96.7 |
| MS.gene052883.t1 | MTR_1g035470 | 43.519 | 108 | 59 | 2 | 25 | 132 | 2 | 107 | 8.75e-22 | 90.9 |
| MS.gene052883.t1 | MTR_3g061310 | 23.860 | 285 | 197 | 9 | 6 | 279 | 9 | 284 | 8.15e-21 | 92.0 |
| MS.gene052883.t1 | MTR_1g108780 | 26.441 | 295 | 160 | 11 | 24 | 279 | 12 | 288 | 3.93e-20 | 92.0 |
| MS.gene052883.t1 | MTR_3g061320 | 25.087 | 287 | 185 | 10 | 6 | 279 | 9 | 278 | 3.51e-19 | 87.0 |
| MS.gene052883.t1 | MTR_3g061340 | 25.085 | 295 | 170 | 8 | 6 | 279 | 9 | 273 | 1.44e-18 | 85.5 |
| MS.gene052883.t1 | MTR_1g035460 | 24.759 | 311 | 179 | 9 | 25 | 293 | 2 | 299 | 1.65e-18 | 87.0 |
| MS.gene052883.t1 | MTR_3g061370 | 25.260 | 289 | 197 | 8 | 1 | 279 | 1 | 280 | 1.68e-18 | 85.1 |
| MS.gene052883.t1 | MTR_3g061350 | 24.296 | 284 | 196 | 8 | 6 | 279 | 9 | 283 | 4.34e-18 | 84.0 |
| MS.gene052883.t1 | MTR_3g061330 | 28.019 | 207 | 137 | 5 | 6 | 203 | 9 | 212 | 5.37e-18 | 83.2 |
| MS.gene052883.t1 | MTR_3g061290 | 30.636 | 173 | 109 | 4 | 6 | 175 | 9 | 173 | 3.65e-17 | 79.7 |
| MS.gene052883.t1 | MTR_7g050640 | 41.758 | 91 | 51 | 1 | 8 | 96 | 12 | 102 | 2.30e-15 | 72.4 |
| MS.gene052883.t1 | MTR_1g035440 | 37.624 | 101 | 60 | 2 | 8 | 105 | 14 | 114 | 4.12e-14 | 72.0 |
| MS.gene052883.t1 | MTR_3g005480 | 23.188 | 276 | 173 | 8 | 7 | 279 | 19 | 258 | 1.00e-12 | 68.2 |
| MS.gene052883.t1 | MTR_3g005490 | 23.656 | 279 | 173 | 8 | 7 | 282 | 19 | 260 | 1.54e-12 | 67.8 |
| MS.gene052883.t1 | MTR_1g021360 | 25.623 | 281 | 155 | 10 | 22 | 267 | 195 | 456 | 8.27e-11 | 63.9 |
| MS.gene052883.t1 | MTR_5g070440 | 22.581 | 279 | 181 | 9 | 9 | 282 | 21 | 269 | 9.24e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052883.t1 | AT3G18990 | 23.055 | 347 | 189 | 10 | 9 | 287 | 6 | 342 | 4.24e-11 | 64.3 |
| MS.gene052883.t1 | AT3G18990 | 23.077 | 338 | 182 | 10 | 9 | 278 | 6 | 333 | 8.22e-11 | 63.2 |
Find 67 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTGCAGATGACCCTTTA+AGG | 0.106528 | 1.1:+20074139 | None:intergenic |
| GTGCTCAAAAGGAAATATTT+TGG | 0.171981 | 1.1:-20074907 | MS.gene052883:CDS |
| TGCAGGTTGGCATAAATTTA+AGG | 0.202920 | 1.1:-20072721 | MS.gene052883:CDS |
| ATATTTGGTTTAAGAGAAAT+TGG | 0.232188 | 1.1:-20074868 | MS.gene052883:CDS |
| AGAAATTTGTGGAGAAATAT+TGG | 0.241294 | 1.1:-20074970 | MS.gene052883:CDS |
| TTTGGGAGTCTAAGAATTAC+TGG | 0.267570 | 1.1:+20074932 | None:intergenic |
| TATTTGAATGACAACCTTAA+AGG | 0.276541 | 1.1:-20074153 | MS.gene052883:CDS |
| AATATCTTAACCTTAAAATA+TGG | 0.285328 | 1.1:+20074785 | None:intergenic |
| AGTCTAAGAATTACTGGATT+TGG | 0.299817 | 1.1:+20074938 | None:intergenic |
| ATATTTCTCCACAAATTTCT+TGG | 0.318034 | 1.1:+20074973 | None:intergenic |
| ACTATCTTCAAGAACTCTTC+TGG | 0.329140 | 1.1:+20075225 | None:intergenic |
| TGGAGCGTGACGGTGATATT+TGG | 0.333381 | 1.1:-20074883 | MS.gene052883:CDS |
| AACTTCACCTCCACTTTCAT+AGG | 0.353581 | 1.1:+20074096 | None:intergenic |
| TAAAATTCATAGATGAAAGT+TGG | 0.371213 | 1.1:-20074727 | MS.gene052883:CDS |
| ATTTGAATGACAACCTTAAA+GGG | 0.391511 | 1.1:-20074152 | MS.gene052883:CDS |
| TCGAAATCATGAACTACATA+AGG | 0.397577 | 1.1:-20075202 | MS.gene052883:CDS |
| TATTTCTCCACAAATTTCTT+GGG | 0.405795 | 1.1:+20074974 | None:intergenic |
| TCATCTGCAAGCATTAGATT+TGG | 0.416468 | 1.1:-20074129 | MS.gene052883:CDS |
| AAATTCGTGCAGTTCACAAA+TGG | 0.417597 | 1.1:-20072804 | MS.gene052883:CDS |
| GAAGATTGCGGATTGAAGAT+TGG | 0.417689 | 1.1:-20072699 | MS.gene052883:CDS |
| TTTGCAAAGTCTCTAAAAGA+TGG | 0.419454 | 1.1:-20074839 | MS.gene052883:CDS |
| AAAATTCATAGATGAAAGTT+GGG | 0.430137 | 1.1:-20074726 | MS.gene052883:CDS |
| GACAATTCAAGTTCAAAACT+TGG | 0.430631 | 1.1:+20074418 | None:intergenic |
| AATTCGTGCAGTTCACAAAT+GGG | 0.433283 | 1.1:-20072803 | MS.gene052883:CDS |
| ACTCCCAAATGGTGCTCAAA+AGG | 0.455326 | 1.1:-20074918 | MS.gene052883:CDS |
| TTACGCCCATGGCTATACTT+TGG | 0.460097 | 1.1:-20074389 | MS.gene052883:intron |
| ACACGAATCTCGATTGTGTT+CGG | 0.462954 | 1.1:+20073004 | None:intergenic |
| GAGAGTTCCCAAGAAATTTG+TGG | 0.469633 | 1.1:-20074981 | MS.gene052883:CDS |
| TTTGGCTTGGGTGATAGTTA+TGG | 0.473644 | 1.1:+20073945 | None:intergenic |
| ATGAGAATGAGAGAACTTGT+AGG | 0.473892 | 1.1:-20072749 | MS.gene052883:CDS |
| TGTGTTTCAGCAGACTTAGA+AGG | 0.475787 | 1.1:-20073043 | MS.gene052883:intron |
| TATTTGGTTTAAGAGAAATT+GGG | 0.491470 | 1.1:-20074867 | MS.gene052883:CDS |
| GATATTTGGTCACAATACAT+TGG | 0.502848 | 1.1:-20074768 | MS.gene052883:CDS |
| CGAAATCATGAACTACATAA+GGG | 0.505471 | 1.1:-20075201 | MS.gene052883:CDS |
| AGAACTTGTAGGTTCTATGC+AGG | 0.508431 | 1.1:-20072738 | MS.gene052883:CDS |
| TACTTTGCAGGTAGTAAGAG+AGG | 0.516159 | 1.1:-20074502 | MS.gene052883:intron |
| AGAACATGCATTGTCACCTC+TGG | 0.519227 | 1.1:-20074054 | MS.gene052883:CDS |
| CATAAATTTAAGGAAGATTG+CGG | 0.529511 | 1.1:-20072711 | MS.gene052883:CDS |
| GACTAACCAAAGTATAGCCA+TGG | 0.533080 | 1.1:+20074383 | None:intergenic |
| CTTGTAGGTTCTATGCAGGT+TGG | 0.536785 | 1.1:-20072734 | MS.gene052883:CDS |
| AGAATTACTTATGTTAAATG+TGG | 0.553199 | 1.1:-20072963 | MS.gene052883:intron |
| GAGAGGAGGCATGATTAAGA+AGG | 0.553426 | 1.1:-20074485 | MS.gene052883:CDS |
| ATTAATCAGCAGAAAATCAC+AGG | 0.556090 | 1.1:-20074605 | MS.gene052883:intron |
| GACTATGTTACTAATAGTGC+TGG | 0.558003 | 1.1:-20074662 | MS.gene052883:CDS |
| GTAATTCTTAGACTCCCAAA+TGG | 0.561023 | 1.1:-20074929 | MS.gene052883:CDS |
| TTCATAGATGAAAGTTGGGA+AGG | 0.562576 | 1.1:-20074722 | MS.gene052883:CDS |
| TTTAACATAAGTAATTCTAC+CGG | 0.563222 | 1.1:+20072968 | None:intergenic |
| GGCAAATGGCTTCCAACCAG+AGG | 0.587307 | 1.1:+20074038 | None:intergenic |
| CATGCATTGTCACCTCTGGT+TGG | 0.594204 | 1.1:-20074050 | MS.gene052883:CDS |
| TATGCTCTTGAAAAGTCACT+TGG | 0.596669 | 1.1:+20074174 | None:intergenic |
| ATAGTGCTGGCACATCTCAA+AGG | 0.602521 | 1.1:-20074649 | MS.gene052883:CDS |
| AAGAGACATAAAGAGTGTCA+TGG | 0.604494 | 1.1:-20072828 | MS.gene052883:CDS |
| TGAGAACATGCCTATGAAAG+TGG | 0.608998 | 1.1:-20074106 | MS.gene052883:CDS |
| ATAGTTATGGTGAACGAAAG+TGG | 0.610916 | 1.1:+20073958 | None:intergenic |
| TTGTCACAATCTTACGCCCA+TGG | 0.612713 | 1.1:-20074400 | MS.gene052883:CDS |
| TTCGTGCAGTTCACAAATGG+GGG | 0.622353 | 1.1:-20072801 | MS.gene052883:CDS |
| ATTCGTGCAGTTCACAAATG+GGG | 0.622898 | 1.1:-20072802 | MS.gene052883:CDS |
| GTTTCAGCAGACTTAGAAGG+AGG | 0.632685 | 1.1:-20073040 | MS.gene052883:intron |
| TTTGCAGGTAGTAAGAGAGG+AGG | 0.649019 | 1.1:-20074499 | MS.gene052883:intron |
| ATAACTATCACCCAAGCCAA+AGG | 0.651162 | 1.1:-20073943 | MS.gene052883:intron |
| ACTTAGAAGGAGGTAATGTG+AGG | 0.657714 | 1.1:-20073030 | MS.gene052883:CDS |
| ACTAACCAAAGTATAGCCAT+GGG | 0.659069 | 1.1:+20074384 | None:intergenic |
| CTTAGAAGGAGGTAATGTGA+GGG | 0.660263 | 1.1:-20073029 | MS.gene052883:CDS |
| TCGTGTGAACTCTACCTACC+CGG | 0.663506 | 1.1:-20072987 | MS.gene052883:CDS |
| CATAAGTAATTCTACCGGGT+AGG | 0.665851 | 1.1:+20072973 | None:intergenic |
| TTAACATAAGTAATTCTACC+GGG | 0.701332 | 1.1:+20072969 | None:intergenic |
| GAACATGCCTATGAAAGTGG+AGG | 0.736568 | 1.1:-20074103 | MS.gene052883:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATATAACTTACAAAT+TGG | - | chr1.1:20073860-20073879 | MS.gene052883:intron | 10.0% |
| !! | ACAAATTATTTAATATTTCA+AGG | - | chr1.1:20074659-20074678 | MS.gene052883:CDS | 10.0% |
| !!! | AAATAATTTGTAATATATGA+GGG | + | chr1.1:20074650-20074669 | None:intergenic | 10.0% |
| !!! | AATTTGTAAGTTATATTTTT+TGG | + | chr1.1:20073861-20073880 | None:intergenic | 10.0% |
| !!! | ATTTTTTAGAGATTTTAAAT+AGG | - | chr1.1:20074166-20074185 | MS.gene052883:CDS | 10.0% |
| !!! | TAAATAATTTGTAATATATG+AGG | + | chr1.1:20074651-20074670 | None:intergenic | 10.0% |
| !!! | TTTTCAAAAAAATTATAACT+AGG | - | chr1.1:20074522-20074541 | MS.gene052883:intron | 10.0% |
| !!! | TTTTGAATTAAATGTTAATT+TGG | - | chr1.1:20074190-20074209 | MS.gene052883:intron | 10.0% |
| !! | AATATCTTAACCTTAAAATA+TGG | + | chr1.1:20073093-20073112 | None:intergenic | 15.0% |
| !! | ACAATAATCATTTATGAATA+AGG | + | chr1.1:20072866-20072885 | None:intergenic | 15.0% |
| !! | ACTCTAATTTCATTAAAAAA+AGG | + | chr1.1:20074377-20074396 | None:intergenic | 15.0% |
| !! | ATTATTAACAAATGTATAGT+TGG | + | chr1.1:20072796-20072815 | None:intergenic | 15.0% |
| !!! | AAAAAAGTTACTAGTAATTT+TGG | - | chr1.1:20073633-20073652 | MS.gene052883:intron | 15.0% |
| !!! | ATAAAATTTAAAACAGAACT+TGG | + | chr1.1:20074590-20074609 | None:intergenic | 15.0% |
| !!! | CTTTTTTAAATAAAGTATGA+AGG | + | chr1.1:20073963-20073982 | None:intergenic | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | - | chr1.1:20073093-20073112 | MS.gene052883:intron | 15.0% |
| !!! | TGTTCAAATATTTTTTTTGA+AGG | - | chr1.1:20073536-20073555 | MS.gene052883:intron | 15.0% |
| !!! | TGTTCTAAATTATTAGTTAT+TGG | - | chr1.1:20073565-20073584 | MS.gene052883:intron | 15.0% |
| !!! | TTCATCTATGAATTTTATAT+TGG | + | chr1.1:20073145-20073164 | None:intergenic | 15.0% |
| !!! | TTGTTATTCTATCTAATATA+TGG | - | chr1.1:20073327-20073346 | MS.gene052883:intron | 15.0% |
| !! | AAAATTCATAGATGAAAGTT+GGG | - | chr1.1:20073149-20073168 | MS.gene052883:intron | 20.0% |
| !! | AGAATTACTTATGTTAAATG+TGG | - | chr1.1:20074912-20074931 | MS.gene052883:CDS | 20.0% |
| !! | CAATTGATATTAAGCAAATT+TGG | + | chr1.1:20074012-20074031 | None:intergenic | 20.0% |
| !! | TAAAATTCATAGATGAAAGT+TGG | - | chr1.1:20073148-20073167 | MS.gene052883:intron | 20.0% |
| !! | TATCTAATATATGGCTAAAA+TGG | - | chr1.1:20073336-20073355 | MS.gene052883:intron | 20.0% |
| !! | TCTATTGTGATGATAATATT+TGG | - | chr1.1:20074078-20074097 | MS.gene052883:CDS | 20.0% |
| !! | TTTAACATAAGTAATTCTAC+CGG | + | chr1.1:20074910-20074929 | None:intergenic | 20.0% |
| !!! | AAGTTATATTTTTTGGCAAA+TGG | + | chr1.1:20073854-20073873 | None:intergenic | 20.0% |
| !!! | ATATTTGGTTTAAGAGAAAT+TGG | - | chr1.1:20073007-20073026 | MS.gene052883:CDS | 20.0% |
| !!! | CTTGAACTAGTTTTTTTAAT+TGG | + | chr1.1:20074687-20074706 | None:intergenic | 20.0% |
| !!! | GAATTAAATGTTAATTTGGT+TGG | - | chr1.1:20074194-20074213 | MS.gene052883:intron | 20.0% |
| !!! | GCTTTAGTTTTCAAATATTT+AGG | - | chr1.1:20073063-20073082 | MS.gene052883:intron | 20.0% |
| !!! | TATTTGGTTTAAGAGAAATT+GGG | - | chr1.1:20073008-20073027 | MS.gene052883:CDS | 20.0% |
| !!! | TTAGTTTTCAAATATTTAGG+TGG | - | chr1.1:20073066-20073085 | MS.gene052883:intron | 20.0% |
| !!! | TTTTGTTTTTTTTACTTTGC+AGG | - | chr1.1:20073361-20073380 | MS.gene052883:intron | 20.0% |
| !!! | TTTTTTTTTTTTGCTAAGCA+GGG | + | chr1.1:20074480-20074499 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTTTGCTAAGC+AGG | + | chr1.1:20074481-20074500 | None:intergenic | 20.0% |
| ! | AAAATCTGTACAAAGAAATG+AGG | + | chr1.1:20074353-20074372 | None:intergenic | 25.0% |
| ! | AAATCTGTACAAAGAAATGA+GGG | + | chr1.1:20074352-20074371 | None:intergenic | 25.0% |
| ! | AGAAATTTGTGGAGAAATAT+TGG | - | chr1.1:20072905-20072924 | MS.gene052883:intron | 25.0% |
| ! | ATATTTCTCCACAAATTTCT+TGG | + | chr1.1:20072905-20072924 | None:intergenic | 25.0% |
| ! | ATTTGAATGACAACCTTAAA+GGG | - | chr1.1:20073723-20073742 | MS.gene052883:intron | 25.0% |
| ! | CAGAAAAATAAAAGAGTCTA+CGG | + | chr1.1:20074288-20074307 | None:intergenic | 25.0% |
| ! | CATAAATTTAAGGAAGATTG+CGG | - | chr1.1:20075164-20075183 | MS.gene052883:intron | 25.0% |
| ! | GATAATATTTGGAAGAAAAG+AGG | - | chr1.1:20074089-20074108 | MS.gene052883:CDS | 25.0% |
| ! | TAAACCTTGAATTGAAATAG+AGG | - | chr1.1:20073675-20073694 | MS.gene052883:intron | 25.0% |
| ! | TAATGAAATTAGAGTTTGAC+AGG | - | chr1.1:20074382-20074401 | MS.gene052883:intron | 25.0% |
| ! | TATTTCTCCACAAATTTCTT+GGG | + | chr1.1:20072904-20072923 | None:intergenic | 25.0% |
| ! | TATTTGAATGACAACCTTAA+AGG | - | chr1.1:20073722-20073741 | MS.gene052883:intron | 25.0% |
| ! | TTAACATAAGTAATTCTACC+GGG | + | chr1.1:20074909-20074928 | None:intergenic | 25.0% |
| !! | GATTGTGATTTGTAATTGAA+AGG | + | chr1.1:20072774-20072793 | None:intergenic | 25.0% |
| !! | TAACTAGGTTTTCTTACTTT+AGG | - | chr1.1:20074537-20074556 | MS.gene052883:intron | 25.0% |
| !! | TCATAATATTGCACTTTTAC+AGG | + | chr1.1:20075110-20075129 | None:intergenic | 25.0% |
| !! | TGCTCAAAAGGAAATATTTT+GGG | - | chr1.1:20072969-20072988 | MS.gene052883:CDS | 25.0% |
| AAGTATGAAGGAAAAACCTT+TGG | + | chr1.1:20073951-20073970 | None:intergenic | 30.0% | |
| AATCTGTACAAAGAAATGAG+GGG | + | chr1.1:20074351-20074370 | None:intergenic | 30.0% | |
| AATTCCTTTGAACAATGACA+AGG | - | chr1.1:20074041-20074060 | MS.gene052883:CDS | 30.0% | |
| AGTCTAAGAATTACTGGATT+TGG | + | chr1.1:20072940-20072959 | None:intergenic | 30.0% | |
| AGTCTACGGAAATCTATAAT+TGG | + | chr1.1:20074274-20074293 | None:intergenic | 30.0% | |
| ATAACCTTGTCATTGTTCAA+AGG | + | chr1.1:20074048-20074067 | None:intergenic | 30.0% | |
| ATAAGGATATGTAATGCAAC+AGG | + | chr1.1:20072849-20072868 | None:intergenic | 30.0% | |
| ATTAATCAGCAGAAAATCAC+AGG | - | chr1.1:20073270-20073289 | MS.gene052883:intron | 30.0% | |
| ATTTGTAATATATGAGGGAG+AGG | + | chr1.1:20074645-20074664 | None:intergenic | 30.0% | |
| CGAAATCATGAACTACATAA+GGG | - | chr1.1:20072674-20072693 | MS.gene052883:CDS | 30.0% | |
| GATATTTGGTCACAATACAT+TGG | - | chr1.1:20073107-20073126 | MS.gene052883:intron | 30.0% | |
| GTATCCTCTATTTCAATTCA+AGG | + | chr1.1:20073682-20073701 | None:intergenic | 30.0% | |
| GTCTACGGAAATCTATAATT+GGG | + | chr1.1:20074273-20074292 | None:intergenic | 30.0% | |
| TCGAAATCATGAACTACATA+AGG | - | chr1.1:20072673-20072692 | MS.gene052883:CDS | 30.0% | |
| TTGTCATTGTTCAAAGGAAT+TGG | + | chr1.1:20074042-20074061 | None:intergenic | 30.0% | |
| ! | GACAATTCAAGTTCAAAACT+TGG | + | chr1.1:20073460-20073479 | None:intergenic | 30.0% |
| ! | GTGCTCAAAAGGAAATATTT+TGG | - | chr1.1:20072968-20072987 | MS.gene052883:CDS | 30.0% |
| ! | TTTAGGTGGTCCATATTTTA+AGG | - | chr1.1:20073080-20073099 | MS.gene052883:intron | 30.0% |
| ! | TTTGCAAAGTCTCTAAAAGA+TGG | - | chr1.1:20073036-20073055 | MS.gene052883:CDS | 30.0% |
| !! | TCAAAAGGAAATATTTTGGG+TGG | - | chr1.1:20072972-20072991 | MS.gene052883:CDS | 30.0% |
| AAATCAAAGTGTAGCTCAGT+AGG | + | chr1.1:20074228-20074247 | None:intergenic | 35.0% | |
| AAATTCGTGCAGTTCACAAA+TGG | - | chr1.1:20075071-20075090 | MS.gene052883:intron | 35.0% | |
| AATTAGAGTTTGACAGGCAT+AGG | - | chr1.1:20074388-20074407 | MS.gene052883:intron | 35.0% | |
| AATTCGTGCAGTTCACAAAT+GGG | - | chr1.1:20075072-20075091 | MS.gene052883:intron | 35.0% | |
| ACATCTCAAAGGAGAAAAAG+TGG | - | chr1.1:20073237-20073256 | MS.gene052883:intron | 35.0% | |
| ACTAACCAAAGTATAGCCAT+GGG | + | chr1.1:20073494-20073513 | None:intergenic | 35.0% | |
| ACTATCTTCAAGAACTCTTC+TGG | + | chr1.1:20072653-20072672 | None:intergenic | 35.0% | |
| ATAGTTATGGTGAACGAAAG+TGG | + | chr1.1:20073920-20073939 | None:intergenic | 35.0% | |
| ATCTGTACAAAGAAATGAGG+GGG | + | chr1.1:20074350-20074369 | None:intergenic | 35.0% | |
| ATGAGAATGAGAGAACTTGT+AGG | - | chr1.1:20075126-20075145 | MS.gene052883:intron | 35.0% | |
| GAACAATGACAAGGTTATGA+AGG | - | chr1.1:20074050-20074069 | MS.gene052883:CDS | 35.0% | |
| GACTATGTTACTAATAGTGC+TGG | - | chr1.1:20073213-20073232 | MS.gene052883:intron | 35.0% | |
| GATTTCTTTCGTGACAGAAT+TGG | - | chr1.1:20074243-20074262 | MS.gene052883:intron | 35.0% | |
| GTAATTCTTAGACTCCCAAA+TGG | - | chr1.1:20072946-20072965 | MS.gene052883:intron | 35.0% | |
| TATGCTCTTGAAAAGTCACT+TGG | + | chr1.1:20073704-20073723 | None:intergenic | 35.0% | |
| TCATCTGCAAGCATTAGATT+TGG | - | chr1.1:20073746-20073765 | MS.gene052883:intron | 35.0% | |
| TTCATAGATGAAAGTTGGGA+AGG | - | chr1.1:20073153-20073172 | MS.gene052883:intron | 35.0% | |
| TTTGGGAGTCTAAGAATTAC+TGG | + | chr1.1:20072946-20072965 | None:intergenic | 35.0% | |
| ! | ATTTCCTTTTGAGCACCATT+TGG | + | chr1.1:20072964-20072983 | None:intergenic | 35.0% |
| ! | TGCAGGTTGGCATAAATTTA+AGG | - | chr1.1:20075154-20075173 | MS.gene052883:intron | 35.0% |
| ! | TTGTTCGCTTTCTTTTCTGA+GGG | - | chr1.1:20074310-20074329 | MS.gene052883:intron | 35.0% |
| ! | TTTCCTTTTGAGCACCATTT+GGG | + | chr1.1:20072963-20072982 | None:intergenic | 35.0% |
| ! | TTTGTTCGCTTTCTTTTCTG+AGG | - | chr1.1:20074309-20074328 | MS.gene052883:intron | 35.0% |
| !! | AAGAGACATAAAGAGTGTCA+TGG | - | chr1.1:20075047-20075066 | MS.gene052883:intron | 35.0% |
| AACTTCACCTCCACTTTCAT+AGG | + | chr1.1:20073782-20073801 | None:intergenic | 40.0% | |
| ACACGAATCTCGATTGTGTT+CGG | + | chr1.1:20074874-20074893 | None:intergenic | 40.0% | |
| ACTTAGAAGGAGGTAATGTG+AGG | - | chr1.1:20074845-20074864 | MS.gene052883:CDS | 40.0% | |
| AGAACTTGTAGGTTCTATGC+AGG | - | chr1.1:20075137-20075156 | MS.gene052883:intron | 40.0% | |
| AGTACATACTCGAGAGATCA+TGG | + | chr1.1:20074139-20074158 | None:intergenic | 40.0% | |
| ATAACTATCACCCAAGCCAA+AGG | - | chr1.1:20073932-20073951 | MS.gene052883:intron | 40.0% | |
| ATTCGTGCAGTTCACAAATG+GGG | - | chr1.1:20075073-20075092 | MS.gene052883:intron | 40.0% | |
| CATAAGTAATTCTACCGGGT+AGG | + | chr1.1:20074905-20074924 | None:intergenic | 40.0% | |
| CTTAGAAGGAGGTAATGTGA+GGG | - | chr1.1:20074846-20074865 | MS.gene052883:CDS | 40.0% | |
| GACTAACCAAAGTATAGCCA+TGG | + | chr1.1:20073495-20073514 | None:intergenic | 40.0% | |
| GAGAGTTCCCAAGAAATTTG+TGG | - | chr1.1:20072894-20072913 | MS.gene052883:intron | 40.0% | |
| TACTTTGCAGGTAGTAAGAG+AGG | - | chr1.1:20073373-20073392 | MS.gene052883:intron | 40.0% | |
| TCACAAATGGGGGAAAATCA+TGG | - | chr1.1:20075084-20075103 | MS.gene052883:intron | 40.0% | |
| TCTGTACAAAGAAATGAGGG+GGG | + | chr1.1:20074349-20074368 | None:intergenic | 40.0% | |
| TGAAGGAAAAACCTTTGGCT+TGG | + | chr1.1:20073946-20073965 | None:intergenic | 40.0% | |
| TGAGAACATGCCTATGAAAG+TGG | - | chr1.1:20073769-20073788 | MS.gene052883:intron | 40.0% | |
| TGTGTTTCAGCAGACTTAGA+AGG | - | chr1.1:20074832-20074851 | MS.gene052883:CDS | 40.0% | |
| ! | GAAGATTGCGGATTGAAGAT+TGG | - | chr1.1:20075176-20075195 | MS.gene052883:intron | 40.0% |
| ! | GAAGGAAAAACCTTTGGCTT+GGG | + | chr1.1:20073945-20073964 | None:intergenic | 40.0% |
| !! | GCTTTCTTTTCTGAGGGTTT+TGG | - | chr1.1:20074316-20074335 | MS.gene052883:intron | 40.0% |
| !! | TGGAAGAAAAGAGGCATTGA+AGG | - | chr1.1:20074098-20074117 | MS.gene052883:CDS | 40.0% |
| !! | TTTGGCTTGGGTGATAGTTA+TGG | + | chr1.1:20073933-20073952 | None:intergenic | 40.0% |
| ACTCCCAAATGGTGCTCAAA+AGG | - | chr1.1:20072957-20072976 | MS.gene052883:intron | 45.0% | |
| AGAACATGCATTGTCACCTC+TGG | - | chr1.1:20073821-20073840 | MS.gene052883:intron | 45.0% | |
| AGAGTTTGACAGGCATAGGA+CGG | - | chr1.1:20074392-20074411 | MS.gene052883:CDS | 45.0% | |
| CTGTACAAAGAAATGAGGGG+GGG | + | chr1.1:20074348-20074367 | None:intergenic | 45.0% | |
| CTTGTAGGTTCTATGCAGGT+TGG | - | chr1.1:20075141-20075160 | MS.gene052883:intron | 45.0% | |
| GAACATGCCTATGAAAGTGG+AGG | - | chr1.1:20073772-20073791 | MS.gene052883:intron | 45.0% | |
| GTTTCAGCAGACTTAGAAGG+AGG | - | chr1.1:20074835-20074854 | MS.gene052883:CDS | 45.0% | |
| TGCTTGCAGATGACCCTTTA+AGG | + | chr1.1:20073739-20073758 | None:intergenic | 45.0% | |
| TTACGCCCATGGCTATACTT+TGG | - | chr1.1:20073486-20073505 | MS.gene052883:intron | 45.0% | |
| TTCGTGCAGTTCACAAATGG+GGG | - | chr1.1:20075074-20075093 | MS.gene052883:intron | 45.0% | |
| TTGTCACAATCTTACGCCCA+TGG | - | chr1.1:20073475-20073494 | MS.gene052883:intron | 45.0% | |
| TTTGCAGGTAGTAAGAGAGG+AGG | - | chr1.1:20073376-20073395 | MS.gene052883:intron | 45.0% | |
| ! | GAGAGGAGGCATGATTAAGA+AGG | - | chr1.1:20073390-20073409 | MS.gene052883:intron | 45.0% |
| !! | ATAGTGCTGGCACATCTCAA+AGG | - | chr1.1:20073226-20073245 | MS.gene052883:intron | 45.0% |
| !! | ATATTTTGGGTGGAGCGTGA+CGG | - | chr1.1:20072982-20073001 | MS.gene052883:CDS | 45.0% |
| !! | GAGGCATTGAAGGAAGTTCA+AGG | - | chr1.1:20074108-20074127 | MS.gene052883:CDS | 45.0% |
| ACAACACCGACATCCCAACT+AGG | + | chr1.1:20074437-20074456 | None:intergenic | 50.0% | |
| CATGCATTGTCACCTCTGGT+TGG | - | chr1.1:20073825-20073844 | MS.gene052883:intron | 50.0% | |
| TCGTGTGAACTCTACCTACC+CGG | - | chr1.1:20074888-20074907 | MS.gene052883:CDS | 50.0% | |
| TGCCAACCTAGTTGGGATGT+CGG | - | chr1.1:20074428-20074447 | MS.gene052883:CDS | 50.0% | |
| TGGAGCGTGACGGTGATATT+TGG | - | chr1.1:20072992-20073011 | MS.gene052883:CDS | 50.0% | |
| CACCGACATCCCAACTAGGT+TGG | + | chr1.1:20074433-20074452 | None:intergenic | 55.0% | |
| CAGGGAGAGAGACAGACATC+AGG | + | chr1.1:20074462-20074481 | None:intergenic | 55.0% | |
| GGCAAATGGCTTCCAACCAG+AGG | + | chr1.1:20073840-20073859 | None:intergenic | 55.0% | |
| CATAGGACGGAGACTTCCCG+GGG | - | chr1.1:20074405-20074424 | MS.gene052883:CDS | 60.0% | |
| GCATAGGACGGAGACTTCCC+GGG | - | chr1.1:20074404-20074423 | MS.gene052883:CDS | 60.0% | |
| GGCATAGGACGGAGACTTCC+CGG | - | chr1.1:20074403-20074422 | MS.gene052883:CDS | 60.0% | |
| ! | TCCCAACTAGGTTGGCACCC+CGG | + | chr1.1:20074425-20074444 | None:intergenic | 60.0% |
| ! | CCCAACTAGGTTGGCACCCC+GGG | + | chr1.1:20074424-20074443 | None:intergenic | 65.0% |
| ! | CCCGGGGTGCCAACCTAGTT+GGG | - | chr1.1:20074421-20074440 | MS.gene052883:CDS | 65.0% |
| ! | TCCCGGGGTGCCAACCTAGT+TGG | - | chr1.1:20074420-20074439 | MS.gene052883:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 20072635 | 20075262 | 20072635 | ID=MS.gene052883 |
| chr1.1 | mRNA | 20072635 | 20075262 | 20072635 | ID=MS.gene052883.t1;Parent=MS.gene052883 |
| chr1.1 | exon | 20075194 | 20075262 | 20075194 | ID=MS.gene052883.t1.exon1;Parent=MS.gene052883.t1 |
| chr1.1 | CDS | 20075194 | 20075262 | 20075194 | ID=cds.MS.gene052883.t1;Parent=MS.gene052883.t1 |
| chr1.1 | exon | 20074606 | 20075002 | 20074606 | ID=MS.gene052883.t1.exon2;Parent=MS.gene052883.t1 |
| chr1.1 | CDS | 20074606 | 20075002 | 20074606 | ID=cds.MS.gene052883.t1;Parent=MS.gene052883.t1 |
| chr1.1 | exon | 20074390 | 20074514 | 20074390 | ID=MS.gene052883.t1.exon3;Parent=MS.gene052883.t1 |
| chr1.1 | CDS | 20074390 | 20074514 | 20074390 | ID=cds.MS.gene052883.t1;Parent=MS.gene052883.t1 |
| chr1.1 | exon | 20073944 | 20074202 | 20073944 | ID=MS.gene052883.t1.exon4;Parent=MS.gene052883.t1 |
| chr1.1 | CDS | 20073944 | 20074202 | 20073944 | ID=cds.MS.gene052883.t1;Parent=MS.gene052883.t1 |
| chr1.1 | exon | 20072964 | 20073055 | 20072964 | ID=MS.gene052883.t1.exon5;Parent=MS.gene052883.t1 |
| chr1.1 | CDS | 20072964 | 20073055 | 20072964 | ID=cds.MS.gene052883.t1;Parent=MS.gene052883.t1 |
| chr1.1 | exon | 20072635 | 20072871 | 20072635 | ID=MS.gene052883.t1.exon6;Parent=MS.gene052883.t1 |
| chr1.1 | CDS | 20072635 | 20072871 | 20072635 | ID=cds.MS.gene052883.t1;Parent=MS.gene052883.t1 |
| Gene Sequence |
| Protein sequence |
