AlfalfaGEDB | MS.gene068155

M. sativa cultivar XinJiangDaYe / MS.gene068155

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068155.t1	XP_024630376.1	78.2	445	57	3	1	435	1	415	6.80E-183	650.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068155.t1	Q8L3W1	21.9	333	225	8	19	321	6	333	5.3e-11	70.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068155.t1	A0A072U9K2	67.9	473	98	6	8	435	7	470	3.1e-169	604.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene068155.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene026323	MS.gene068155	PPI
MS.gene026326	MS.gene068155	PPI
MS.gene026334	MS.gene068155	PPI
MS.gene026340	MS.gene068155	PPI
MS.gene026341	MS.gene068155	PPI
MS.gene026344	MS.gene068155	PPI
MS.gene026345	MS.gene068155	PPI
MS.gene034709	MS.gene068155	PPI
MS.gene040683	MS.gene068155	PPI
MS.gene040686	MS.gene068155	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068155.t1	MTR_6g061070	69.133	473	92	6	8	435	7	470	0.0	634
MS.gene068155.t1	MTR_1g035520	58.746	303	106	6	34	323	87	383	4.36e-105	317
MS.gene068155.t1	MTR_1g035520	98.039	102	2	0	334	435	282	383	2.35e-64	212
MS.gene068155.t1	MTR_1g033740	64.103	195	48	3	1	192	1	176	2.10e-79	244
MS.gene068155.t1	MTR_1g035480	63.830	188	45	3	5	192	5	169	1.68e-76	236
MS.gene068155.t1	MTR_1g035500	61.140	193	53	3	4	192	6	180	6.78e-76	235
MS.gene068155.t1	MTR_1g035620	36.758	438	209	13	23	434	13	408	8.34e-66	216
MS.gene068155.t1	MTR_1g035570	34.507	426	216	12	28	435	14	394	1.38e-65	216
MS.gene068155.t1	MTR_1g035510	46.888	241	100	7	34	270	1	217	1.82e-57	189
MS.gene068155.t1	MTR_1g035470	61.783	157	36	3	34	190	1	133	2.65e-55	180

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068155.t1	AT3G18990	24.551	334	215	12	19	321	6	333	1.44e-19	89.7
MS.gene068155.t1	AT3G18990	24.551	334	215	12	19	321	6	333	2.38e-19	89.7
MS.gene068155.t1	AT4G33280	27.640	322	195	17	18	323	19	318	1.48e-14	75.1

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Find 75 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAATTGGGTGCAACG+CGG	0.811094	1.4:-37260351	MS.gene068155:CDS
AAACTAAAAGATCTCCACAT+CGG	0.700040	1.4:+37260283	None:intergenic
AACAATTAGAAGTGTTGGTG+AGG	0.601806	1.4:-37259102	MS.gene068155:CDS
AACCACAAAGGAACCAGGCC+CGG	0.431169	1.4:-37258913	MS.gene068155:CDS
AAGAAGCATGGTATATTTAG+TGG	0.374789	1.4:-37257066	MS.gene068155:CDS
AAGGAACATGAGTTGAAAGT+TGG	0.478819	1.4:-37258999	MS.gene068155:CDS
AAGGCAACAATTAGAAGTGT+TGG	0.542696	1.4:-37259107	MS.gene068155:CDS
AATCTGACCCTCCTTTGTAT+TGG	0.385935	1.4:+37260259	None:intergenic
AATGGAAACACAGGAGGCAT+GGG	0.555197	1.4:-37259671	MS.gene068155:CDS
AATTCAGTGGAGTTGAGAGT+AGG	0.518002	1.4:-37257042	MS.gene068155:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGAGAACCAACTCAAA+TGG	-	chr1.4:37258081-37258100	MS.gene068155:intron	30.0%
AAACAACACTAATAAGTGGA+CGG	+	chr1.4:37259711-37259730	None:intergenic	30.0%
AAACTAAAAGATCTCCACAT+CGG	+	chr1.4:37257867-37257886	None:intergenic	30.0%
AACGCAATAAAATAGAGCTT+AGG	+	chr1.4:37259486-37259505	None:intergenic	30.0%
AAGCATGATCAAAACAGTAT+TGG	+	chr1.4:37257495-37257514	None:intergenic	30.0%
ACACAAACAACACTAATAAG+TGG	+	chr1.4:37259715-37259734	None:intergenic	30.0%
ACATGAATGAGTTATTGCAA+GGG	-	chr1.4:37259017-37259036	MS.gene068155:CDS	30.0%
ACGCAATAAAATAGAGCTTA+GGG	+	chr1.4:37259485-37259504	None:intergenic	30.0%
AGCATGATCAAAACAGTATT+GGG	+	chr1.4:37257494-37257513	None:intergenic	30.0%
AGTTTAAGGGATATTGGATT+TGG	+	chr1.4:37257757-37257776	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	37256873	37261296	37256873	ID=MS.gene068155
chr1.4	mRNA	37256873	37261296	37256873	ID=MS.gene068155.t1;Parent=MS.gene068155
chr1.4	exon	37261198	37261296	37261198	ID=MS.gene068155.t1.exon1;Parent=MS.gene068155.t1
chr1.4	CDS	37261198	37261296	37261198	ID=cds.MS.gene068155.t1;Parent=MS.gene068155.t1
chr1.4	exon	37259980	37260457	37259980	ID=MS.gene068155.t1.exon2;Parent=MS.gene068155.t1
chr1.4	CDS	37259980	37260457	37259980	ID=cds.MS.gene068155.t1;Parent=MS.gene068155.t1
chr1.4	exon	37259550	37259698	37259550	ID=MS.gene068155.t1.exon3;Parent=MS.gene068155.t1
chr1.4	CDS	37259550	37259698	37259550	ID=cds.MS.gene068155.t1;Parent=MS.gene068155.t1
chr1.4	exon	37258901	37259180	37258901	ID=MS.gene068155.t1.exon4;Parent=MS.gene068155.t1
chr1.4	CDS	37258901	37259180	37258901	ID=cds.MS.gene068155.t1;Parent=MS.gene068155.t1
chr1.4	exon	37257199	37257257	37257199	ID=MS.gene068155.t1.exon5;Parent=MS.gene068155.t1
chr1.4	CDS	37257199	37257257	37257199	ID=cds.MS.gene068155.t1;Parent=MS.gene068155.t1
chr1.4	exon	37256873	37257115	37256873	ID=MS.gene068155.t1.exon6;Parent=MS.gene068155.t1
chr1.4	CDS	37256873	37257115	37256873	ID=cds.MS.gene068155.t1;Parent=MS.gene068155.t1

Gene Sequence

>MS.gene068155

ATGTGGTTTGAACAACACGGCAATGAGCGTGGTAGTGAAGCTAAAGGAATGCATTTCTATTTACATGTTCAACAATGCGAGCTTCAACACAAAGAACTCGTAAGCATTTTTCAAACCCTATAAAGTATAAACTAACCCATTTATGTATTAGTATCTGTAATTATTATTAATTAAGTAAGTGATTAGCGTTTTACTAGACTTTATTCTTTCTGGGTTAATATGATTCTTCATTCAATCTACATTAATATTACACAGTGACCCATTTTTATTATTCAATAAACTTTGCTTCTTCTCAATACATATTCATTGCTTGAAAGTTGTTAAATTCATACGTTGCTTGTTATTCACAAATGAAGATTCAAATGCTATATATTCTATTGGACTTAAGATGTGGATGTTGTTGTATACTTGCTTCACTTTCGTGGTGTATTGAACTTGATTTTCATCACTGAATGAAGTTTGCTTCGTATTAAAAATTTTGACACTAAAAACAAACAACCCTGTACGGATTTATTATCATTAATGGACCTCGTTAACCACTTGTGCTCAATCACTTGGTCATACCAACTCTTTAAATAGACTGTTTAAGGTTTGTAGTCAATGTGTTTGATGAAAACCCCCAATACTGTTTTGATCATGCTTTCTGTTGCAAAATGTTTGGTATGGCAATACCATTTTTGCCTTCGGCTCTCTCTATGTGTAATATTCCCACATATCTGGTTTGCTTAGGTATTTGACCTTAGTTTTCATTATTCAATCAAGTATGCTTTGCTGCATTAATATTCAGTACTAGTTCAATCCAAATTTATACTCATTGCTTTTTGAAAATGTGCTTGCAGATGATTCCAAGGAATTTCGTAGAGAGGTATTGGAAAGATGTACCAAATCCAATATCCCTTAAACTTCCAAATGGGTCAGCATGCAAAATGAATTGGGTGCAACGCGGTGATGGTATTTGGCTTCAGAATTGGAAGAGGTTTGCATGGTCGCTCCGATGTGGAGATCTTTTAGTTTTCCAATACAAAGGAGGGTCAGATTTTCAAGTCATTATATTAGATGATAGTAAATTAGAAATTGACTATTCAAGTATGAGATGCAACAACGATCAAGAAAATACTAAAGAGAGTGATGATGATGACGACGACGACGATGAATATGAGTGTGTTGAGATTCCTAGTGACACTGAAAATACAAAAATTCCCCTCAAGAAAAAGAGAACCAACTCAAATGGCATTGCTACTACTGCTGCTACACCTCAAGGGACTAACATTCACAAGAGAAAAACTAATATCAATGCAACCCAGCAAAAAGTTTCGGGTAAGTTATTCTACTTCCTTTTATTTATTCATCTGTTTATGGGCAAAATATGTTTTTAATTAGTCCCTTAGTTCATCTCAAATTTTGGTTTTAGTCTTTCTTTCCACTTTTTAGTCCATACAAATTACATAAGTACATGTTTTTAGTTCTGTACCCACTTTATTTACGTATATTCTTTTAAGATTAAATTAATTTTCAAGACTGTCATACAAAAAAAATCAAGACGCAAACTTTTATTTTGTACCTTTCAAATGCTGAAAATAGTTTTTAAAGTTTTGCAGACGCTAATGGAAACACAGGAGGCATGGGTAAGAATGCTAAAAATGCACAAAAACTAAATGAGAGAAGTTGCACAAATTCTCATCCCAATGAGAGTCCTAGTTTCACTGTCAAATTATCGCCATATCATGTTGAAGGTGATAATAGATTGGTATGTTTCCTGTACTACTTTTTCTGTAATAGTGACATTTCGTACCTTCATTTTCCTATAGGAACTGAATGTATTGAAATTACAAACAAATCCCCAAATGTCTCTCTTGTTAATAGTTTTATTGAATAAACTTACTAACAGAAAACATATTCATGGTGTAATGTAAATTTTTTCATTAAATTATTAACAAAAGAAAAAAGTATAGCAAACATACTAAAGACAGATTTGAAGATCAAAATAACTAGCGGAAGAGACATTTAGGCATATTTTTATAATTTTTGATACATTTAAGTACCGTTTGAATGAGCCTTGCACATTTCGTGCATGAATATATTTTAATCAATCTGTTTAAACCTTGACCTGAAACAGCCGATACCTAGTTGGTTTTCGAAAGAATACATGAATGAGTTATTGCAAGGGAAGGCAACAATTAGAAGTGTTGGTGAGGACAGTGCATGGCACGTGACACTAAACTTTCAAAAAAGCAGGAGCAGTTTTGTAATGAGGGCTGGTTGGAAGTCATTTTCAAAGGAACATGAGTTGAAAGTTGGTGATGTATGTAAATTTGAGATGACTCAACGTGAACCACTTTCATTCACAATTACTATTATCCCAACCACAAAGGAACCAGGCCCGGAGAAGTTTCAAGGTATTGCTTTTATTATTGTTGTTTTTGAAATGATACATATTTTATTATCGTCTGATTTTGATTTTGATACATTTGATCAATGTTAAAAGTTTTAATTTGCCAACAAACTACAATCAATCAAATGTGTAAAATATTTTAAGGTTTAAATCTTGGACATCATGTTGTGTAGTAGAACGAATATTTCACTTGATTGTACAACCCTTCAGCTAGTCCCCCTAAGCTCTATTTTATTGCGTTGGTTAAATACACATGTTAATGTTACTGTCATTAGGGCTGAGCAAGAATTTGTCATCCGACCAAAATCCGACGTAACAGTAACAAATACTTGTTCAACGGTCGGATGTGTACGGGCTTCAGAAAGAAGTGAGACAAATCAGTTTCACATGGTTTGGAACGGACGAAAGCGGTTCTGTCAAAATGGAATGAGCGGTGTCCGAACCCGTCCACTTATTAGTGTTGTTTGTGTCTCTGTAGAAGCCACACGCGCGTGAAGTGTGAGACTATCTCAAGTCTTGAAAATTCAATTACCTACACACTGTTCAATGTATGTGTGCCATCAAACAGGATGTGTCTTGACTTTTCAATTGTCATGTTTGCCTTTTTTGGATTTTCATATCTCATGTACTCCATTAAAATAAACTTCTTTCTCTTACCTTAATTAATTTATTACAAACAAGCAAGAATATGATATTGAGCCCACCACTACCAGAGAGAAGAAACAAGAACAGGGAATGAACACGAAGCACATGAGATGAGAGATATACAGAGAGGAGAAGAACATTTTCACAGATGAAAGCTAGAGATACAACCGAGCCAAACCACCTGGCCCACCCGTTATTCCGTTAGACCCGTCACCCGCCGAAACTGACGTTGAAACGGTCGGGAATGGTTCACGTTTTCTGATGAGCAGTTGTTGGGCCGAATCCGCCCGTAACCGACCGGTGCTCACCCCTTACTGTCATAAAACCTCGTGATGAAGGATAATGGTGGGTTGTGGGTAGTGTAAATTGTGGTGACCAATAACTGTAAAATAAAATAGAAAAAATGACTGATGTGGACCAATAGATGATAGTGTGTTTAAGGGAGTGTGTAGAGTGTGTGTTCGTGGCATTTCTATAGAGTATTTGATTTTAGTCATTCTAATAATGGCTACATAAAAACTAAGATAAATACTGTACACATATATATTACATGATTAATTCTAAAATATACAAATTTTTCAAGGACTAATACTAAACTATGATTGAAAGTGATATATTTACTAAGATTAATTTTTATACATGGATTAGAAGCTAAAAGTGATATGCTGCGAGGACAAAAAAACATATTTAAACTAAGTTGTAATGATCTTATGATTATAATTGATTTGCACATAGCATTAGTAGATTTTCCCCAACTTCTTCAGTAGATCCCTGAGAAGTTTGTGGACATGTGCAGAAAACCAAGGAGTCCAAGAAAAATCAGAGACAACACCAGTAAAAGATATGGAATATGCGGGCAATTTTGGAGATTGAATTTCAAGGAGCTGCACAAAAACACATGGTTTTAGGGGTATTCATCTTAATTTTTGTTTTCGTGTTTTTTTGTGTACAATTCATGCAAATCTCCTTAAACTATGTTTTCTTTGTTGTTAATTACTGCAGATTCTGTAAGTCTGAATTTACATGAGATGTTCAAGGTTTTTATAACATCATCAGACAAGGTATGAATTCCGTAAAATGCTGTTACCATGTATATAGCTACGTGTGTGAATGTATAAAATTTAATTTGTTCATATATATGCAGTTGGTTGTACTACCAAGTGAGCTGTTGAAGAAGCATGGTATATTTAGTGGAAATTCAGTGGAGTTGAGAGTAGGGGAAGGAACATGGTTTGTAGATGTGAGTTATAATGAACATCTCGACTATGGTTGGTTCACTAAAGGTTGGCAAGAATTTGTGAGAGATTGCAAAGTAAAGACTGGAGACACTTGCTTGTTTGAGACGATTGATGTGCAAAATCATGTGTTCAAGGTTTCAATTGTTTGA

Protein sequence

>MS.gene068155.t1

MWFEQHGNERGSEAKGMHFYLHVQQCELQHKELMIPRNFVERYWKDVPNPISLKLPNGSACKMNWVQRGDGIWLQNWKRFAWSLRCGDLLVFQYKGGSDFQVIILDDSKLEIDYSSMRCNNDQENTKESDDDDDDDDEYECVEIPSDTENTKIPLKKKRTNSNGIATTAATPQGTNIHKRKTNINATQQKVSDANGNTGGMGKNAKNAQKLNERSCTNSHPNESPSFTVKLSPYHVEGDNRLPIPSWFSKEYMNELLQGKATIRSVGEDSAWHVTLNFQKSRSSFVMRAGWKSFSKEHELKVGDVCKFEMTQREPLSFTITIIPTTKEPGPEKFQDSVSLNLHEMFKVFITSSDKLVVLPSELLKKHGIFSGNSVELRVGEGTWFVDVSYNEHLDYGWFTKGWQEFVRDCKVKTGDTCLFETIDVQNHVFKVSIV