AlfalfaGEDB | MS.gene31885

M. sativa cultivar XinJiangDaYe / MS.gene31885

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31885.t1	KEH26464.1	69.2	467	101	4	1	426	2	466	2.20E-174	622.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31885.t1	Q8L3W1	23.4	334	215	11	17	315	6	333	1.7e-13	79.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31885.t1	A0A072U9K2	69.2	467	101	4	1	426	2	466	1.6e-174	622.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene31885.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene026334	MS.gene31885	PPI
MS.gene026340	MS.gene31885	PPI
MS.gene026341	MS.gene31885	PPI
MS.gene026344	MS.gene31885	PPI
MS.gene026345	MS.gene31885	PPI
MS.gene034709	MS.gene31885	PPI
MS.gene040686	MS.gene31885	PPI
MS.gene040687	MS.gene31885	PPI
MS.gene040688	MS.gene31885	PPI
MS.gene040691	MS.gene31885	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31885.t1	MTR_6g061070	69.165	467	101	4	1	426	2	466	0.0	638
MS.gene31885.t1	MTR_6g061070	80.808	99	18	1	538	636	373	470	1.38e-46	171
MS.gene31885.t1	MTR_6g061070	37.788	217	84	6	427	636	149	321	1.84e-25	110
MS.gene31885.t1	MTR_1g035480	68.783	189	33	2	1	183	1	169	3.88e-83	259
MS.gene31885.t1	MTR_1g033740	67.914	187	38	2	2	183	7	176	1.64e-82	258
MS.gene31885.t1	MTR_1g035500	62.234	188	48	2	2	183	10	180	1.71e-76	242
MS.gene31885.t1	MTR_1g035520	48.220	309	125	8	32	317	87	383	2.90e-76	248
MS.gene31885.t1	MTR_1g035520	53.241	216	57	6	425	636	208	383	7.22e-56	194
MS.gene31885.t1	MTR_1g035520	64.567	127	44	1	301	426	253	379	1.76e-46	169
MS.gene31885.t1	MTR_1g035570	36.543	405	223	12	26	425	14	389	2.91e-65	220

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31885.t1	AT3G18990	24.850	334	210	12	17	315	6	333	1.91e-19	90.5
MS.gene31885.t1	AT3G18990	24.850	334	210	12	17	315	6	333	3.14e-19	90.5
MS.gene31885.t1	AT4G33280	24.684	316	205	13	18	317	20	318	4.11e-13	71.6

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Find 111 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACATGATATATTTAG+TGG	0.333899	1.2:+19798672	MS.gene31885:CDS
AAAATGAATTGGGTACAACG+CGG	0.771281	1.2:+19795121	MS.gene31885:CDS
AAATACCTTGAAACTGCTCT+GGG	0.589681	1.2:-19796524	None:intergenic
AAGAGACATAATATATTTAG+TGG	0.341164	1.2:+19796905	MS.gene31885:CDS
AAGGAACATGACTTGAAAGT+TGG	0.470859	1.2:+19796420	MS.gene31885:CDS
AAGGCCACAATTAGAAGTGT+TGG	0.571434	1.2:+19796312	MS.gene31885:CDS
AATAGAAACTGTGGAGGCCG+GGG	0.552110	1.2:+19795746	MS.gene31885:CDS
AATAGAATCAGAGGAGGCAG+TGG	0.572767	1.2:+19798048	MS.gene31885:CDS
AATCTGACCCTCCTTTGTAT+TGG	0.385935	1.2:-19795213	None:intergenic
ACACCTCAAGGGACAAACAT+TGG	0.575666	1.2:+19795427	MS.gene31885:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCATACCAACTCTTTAAG+TGG	+	chr1.2:19794633-19794652	MS.gene31885:intron	30.0%
AATCGAAAGAATGGATGAAA+TGG	-	chr1.2:19794067-19794086	None:intergenic	30.0%
ACATATTCCATATCTTCTTC+TGG	-	chr1.2:19798336-19798355	None:intergenic	30.0%
ATAAGTATATGTAACGTGCA+TGG	-	chr1.2:19796194-19796213	None:intergenic	30.0%
ATCTAGGTATTATCTGTTTC+AGG	-	chr1.2:19796254-19796273	None:intergenic	30.0%
ATTATCAAAATCATGTGGTC+AGG	+	chr1.2:19797304-19797323	MS.gene31885:intron	30.0%
ATTCACAAAGTTGAATGGTT+TGG	-	chr1.2:19793996-19794015	None:intergenic	30.0%
CAAACATTCTTCTAAACATC+TGG	-	chr1.2:19797121-19797140	None:intergenic	30.0%
CATGGAAAATTAGCATAGAT+TGG	-	chr1.2:19797470-19797489	None:intergenic	30.0%
CGATAATTTGAGAGTGAAAT+TGG	-	chr1.2:19798151-19798170	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	19793940	19798887	19793940	ID=MS.gene31885
chr1.2	mRNA	19793940	19798887	19793940	ID=MS.gene31885.t1;Parent=MS.gene31885
chr1.2	exon	19793940	19794032	19793940	ID=MS.gene31885.t1.exon1;Parent=MS.gene31885.t1
chr1.2	CDS	19793940	19794032	19793940	ID=cds.MS.gene31885.t1;Parent=MS.gene31885.t1
chr1.2	exon	19795037	19795493	19795037	ID=MS.gene31885.t1.exon2;Parent=MS.gene31885.t1
chr1.2	CDS	19795037	19795493	19795037	ID=cds.MS.gene31885.t1;Parent=MS.gene31885.t1
chr1.2	exon	19795741	19795898	19795741	ID=MS.gene31885.t1.exon3;Parent=MS.gene31885.t1
chr1.2	CDS	19795741	19795898	19795741	ID=cds.MS.gene31885.t1;Parent=MS.gene31885.t1
chr1.2	exon	19796261	19796540	19796261	ID=MS.gene31885.t1.exon4;Parent=MS.gene31885.t1
chr1.2	CDS	19796261	19796540	19796261	ID=cds.MS.gene31885.t1;Parent=MS.gene31885.t1
chr1.2	exon	19796732	19796793	19796732	ID=MS.gene31885.t1.exon5;Parent=MS.gene31885.t1
chr1.2	CDS	19796732	19796793	19796732	ID=cds.MS.gene31885.t1;Parent=MS.gene31885.t1
chr1.2	exon	19796878	19797105	19796878	ID=MS.gene31885.t1.exon6;Parent=MS.gene31885.t1
chr1.2	CDS	19796878	19797105	19796878	ID=cds.MS.gene31885.t1;Parent=MS.gene31885.t1
chr1.2	exon	19797785	19797884	19797785	ID=MS.gene31885.t1.exon7;Parent=MS.gene31885.t1
chr1.2	CDS	19797785	19797884	19797785	ID=cds.MS.gene31885.t1;Parent=MS.gene31885.t1
chr1.2	exon	19798043	19798203	19798043	ID=MS.gene31885.t1.exon8;Parent=MS.gene31885.t1
chr1.2	CDS	19798043	19798203	19798043	ID=cds.MS.gene31885.t1;Parent=MS.gene31885.t1
chr1.2	exon	19798284	19798353	19798284	ID=MS.gene31885.t1.exon9;Parent=MS.gene31885.t1
chr1.2	CDS	19798284	19798353	19798284	ID=cds.MS.gene31885.t1;Parent=MS.gene31885.t1
chr1.2	exon	19798503	19798561	19798503	ID=MS.gene31885.t1.exon10;Parent=MS.gene31885.t1
chr1.2	CDS	19798503	19798561	19798503	ID=cds.MS.gene31885.t1;Parent=MS.gene31885.t1
chr1.2	exon	19798645	19798887	19798645	ID=MS.gene31885.t1.exon11;Parent=MS.gene31885.t1
chr1.2	CDS	19798645	19798887	19798645	ID=cds.MS.gene31885.t1;Parent=MS.gene31885.t1

Gene Sequence

>MS.gene31885

ATGTCAAGTGTTCACTATGGACGTGGGAGTGAAGCTAAGGGAATGCATTTTTACCAAACCATTCAACTTTGTGAATTGCAGGATGAAGAGCTTGTAAGCATTCTCAATCAGCTTCTTCTTTTTTCCATTTCATCCATTCTTTCGATTATTGAAGTAGCTTTTGTAATTGTGTATCACACTATTTGTTGAAAACACAACGACCCATTTTAATCATTGACCCAATTTAATTATTGAATAAACTTTGTTATTGGAATTAATGAATACGAAGATTTGAATGTTGGTAAGCTCATACATAGTTTTCTTATAATTGCTTTGATTTGATGGAGGAATGTTGCATACTTGCTTATCTGGTTTTCTTAGGTATTTGGATGGAGAGTGTCTCAACCCAATTTCTACCTAAAATTTTGACACTAAAAACAAACAGCCATGTACGGATTTATTATCATTAATGGAATTCATCATTTGGTGGAGCTCGAGGGGTAACCTTGGCGCAACTGGTAAAGTTGTTGTCATGTGACTGTAAGGTCACGGGTTCAAGTCCTGGAAACAGCCTCTTGTGTAAAAACAGGGTAAGGCTGCGTACAATACACCAAATGGTGGGACCCCTTCCCGGACCCTGCGTATGCGGGAGCTTCAGTGCACCGGGTTGCCCTTTTTATCATTTGGTGGAGCTCGTTAACCACTTGTACTCTCAATCATACCAACTCTTTAAGTGGACTGTTTAAGGTTTGTAGTCAATGTGTTTGATGAAAACCCTCAATACTGTTTTGATCATGGTTTCTGTTTAAGAACTAATTTGAGAGCAGTTTTTGAAATTAAATTCATGGAGGAATGTTGCATACTTGCATTATGAGATGACTTGTGTGTATCTACTAGACTTCCAATTAGTTCAGATTTCTTGTATTAGTGCTACGCATGGCTTTGGTTCTAAACTCATTTTGTTTGATACATATATGCTTTGGTCCCAACACAGTTTGCTTAATCAGTCGGTGTATTAATTGAATGAAGTTTGCTGCATTAATCACTTGATGTATGCTTTGCTGCATTAATCTTCATTTCTAATTGAAACTCATTGGTTTTTGAAAATGTTCTTGCAGATGATTCCAAGGAAATTCGTAGAGAGACATTGGAAAGATGTATCAAATCCAACATCGCTTAGACTTCCAAATGGGTCTGAGTTCAAAATGAATTGGGTACAACGCGGTGACGATGTTTGGCTTCAGAACTGGAAGAGGTTTGCGCGCTCTCTCAGATGTGGAGATCTTTTAGTTTTCCAATACAAAGGAGGGTCAGATTTTCATGTCATTATATTGGATGATAGTAGTTTGGAAATTGACTATTCATGTATGAGATGCAATGATGAACAAGAAGCTAAGGAGAGTGATGATGATGATGACTGTGTTGAGATTCCGAATGATCATGAAAATACCCAACAACCCCTCAAGAAAAAGAAAATCAACTCAAATGACATTGCTACTAGTGCTGCTACACCTCAAGGGACAAACATTGGCAAGAGAAAAATTAATATCAATGCATCCTTGCAAAAAGTTTCAGGCAAGTAAATGCAACATTGACAAAAATGTTATTAGGCATTCTATCCACTTTTTAATGCATACAAATTACAATAGTGCATGACTGCATGTTTTTAATCCTAGGCCCGCTGTATTTACGTATTTTTTAATTTTTTAACATTTAATTATTTTTCAAGACTGCCATTAAAATTCAAGACGTGAACTTTTATTAGTTTTTTGAAGTTTTTAAAGACTTTCAAATGCTGAAAATAGTTTTTAAAGTTTTGCAGAGGCTAATAGAAACTGTGGAGGCCGGGGTAAGAAAGCTAAGAAATGCACAAAAACTAAAGATAGGAATGAGAGAAGTTTCACAAATTATCATCCCAATGGGAGTCCTAGTTTCACTGTCAAATTATCGCCATATCACATTGAAGGTTATAATAGATTGGTATGTTTGCTTTACTTCTTTTTTTTTCCAGCAATATTTGTACCTAACTGTGTAAGAGGCTTTCATTTTTCTATAGGAACTGAATGTATCGAAATTACAAACAAATCCCCAAATGTTTCTCTTGTAAATAGTCTTATGGAATAAATTTACTAACAGAAAACATATTCAAGGACTAATGTCAATTTATTCAATAAAAGAGAAAAAGTATAGCTAACATACTAAAGACACATTTGAAAATCAAAATAAGTAACAATAGAGACATTTAGGTATATTTTAATTATTGGTTTGACAGCCATGCACGTTACATATACTTATTGAATATATTTTAAGTAATATCTATTTTAAACCATGACCTGAAACAGATAATACCTAGATGGTTTTCGAAAGAATACATGAATGAGTTATTGCAACAGAAGGCCACAATTAGAAGTGTTGGTGAGGACAGGGCATGGTACGTGACGTTATACTTTGATAAAAGCAAGAGCAGTTTTATAATGCAGGTTGGTTGGAAGTCATTTTCAAAGGAACATGACTTGAAAGTTGGTGATGTATGTAAATTTGAGATGACTCAACGCAAACCACTTTCATTCACAATTACTATTATCCCAGCCACAAAGGAACCATGCCCAGAGCAGTTTCAAGGTATTTCTTTCATTATTATTGTTTTGTAATGATAAATAGTTTTAATTTGTTAACAAATAACAAACAATCATGTGTAACAAATTTTAAGGTTTAAATATACCTTGTCAATGTAAACATACTACTCTTTGCTTTTATTGTGTACAATTCATGAAAATATCTTTAAACTATGTTTTCTTTGTTCTTAATTACAGCAGATTCTGTAAGTCCGAATTTACATGACAAATTCAAGGTTTTTGTAACATCATTCGACAAGGTACGAATTACTTAAAATGTCATTACCATTTATATAGCCATGTGTGTGAATGTGTAGAATTTTAATTTGTTCTTATATATGCAGCTGGTTGTACTACCAAGTGAGCTGTTGAAGAGACATAATATATTTAGTGGAAATTTAGTGGAGTTGAAAGCAGAAGAAGGAACATGGTTTGTGGAGGTGAATTATGATCAACATCTCGATCATGGGTGGTTCACTAAAGGTTGGCAAGAATTTATGAGAGATCGCAAAGTGAAGATTGGAGACACTTGTTTGTTTGAGATGATTGACGTGCAAAATCATGTATTCAAGGTTTCAATTATTCCAGATGTTTAGAAGAATGTTTGTGTTTTGTTACTTTGTAATTAGATGTTATATGTTATATTTCATATAATCTTTTTACAATAGATATTTAGTTGTGTTAATGATGTAATTATTACTATCTAAGTTCATCTGTGAATGAATGCAAAGTGAAGATTGAGGACACTAGTTTTTATGAGATATTGATTGATTATCAAAATCATGTGGTCAGGGTTTCAATTAGAAGAACACTTATGTCTTTTGTTAGTTTGCAATTAGAAGATTACATTTCATATGAACTTCAGATGACCACTCTATGAAATATGAGTGCTTTTAGAATTTTCAATCTTTGATCTAAGAGAGCTTGTAACACCCAATCTATGCTAATTTTCCATGTTGCTTATCTTTCGTTACCTCCTCACTCTTTCGTAATACCAAGTCTCCTTCCTTCAAGCTTTGAGGTTTAACCTTTGTGTTGAATGTGTTCACGACAGTTATGCGCGGTATTTCTCTGACTTTGTCAAGTAAGTGAAGACATTCATGTTAAATTGTTTTGTTTTACAAAAGCTAGAGTCAAAACTCACTCAAATTGCAAGAATAAGAGCCAAGTATGACATGCAACGATGACCACGACACTAGCAAACAATATTGTAGTACCAACGACAGTGAAATTATCTTACAACCCCTGAAGAAAAAGAAAACCAACACAAATGAGAGCACTGCTACACCTCAAGGGACAAGCATTGGCAAGATAAAATATCATATGAATGCAACCCAGCAAAAAGTCTCAGGTAAAGTACATGTTTTCTGGAATGTACTTGCTTTATTTATTTTGTTTTTTTGAAGATTAAATTAATTTCATGACTGTCATAAAAAATAAAAATTTCAAGAGTTGAAAATTTTATTTTGTACCTTTTAAATGCTGAAAATAATTTAATTTTTTTTGCAGAGGCTAATAGAATCAGAGGAGGCAGTGGTAAGAAAGCTAATAAATACACAAAAAGTAAAGATGGGAATGAGAGAAGTTACACAAATTCTCAAGCCAATGAGAATCCCAATTTCACTCTCAAATTATCGCGATCCGATGTGGAAGGTGATAGATTAAAATTGGTATGTTTCCTATACTTTTTTTTTAGTAAACAGTCCAAATAATGTAAACATACTACTCTTTGCTTTTGATCCCTGACAAGGCTGTGGACATGCAGAAAACAACGACTCCAAATAAAATCAGAGACGATGCCAGAAGAAGATATGGAATATGTGAGCAATTTTGGAGAACGAATTTCAAACAGAAGCCCAAAAACACATGGTCTCAGGAGTATTCATCTTAATTTTATTTTTCAAGCTTTTATTGCGTACAATTCAAGAAAATATCCTTAAACTGTTTTCTTTGTTCTTAATTACTGCAGATTCTGTAAGTCCGAATTTACATGACAAATTCAAGGTTTTTGTAACATCATTAGACAAGGTATGAATTACTTAAAATGTTATTACATTGTATATAACTATGTTGTGAATGTAAATTTTTTAAATTTGTTCTTATATATGCAGTTGGTTGTACTACCAAGTGAGCTGTTAAAAAGACATGATATATTTAGTGGAAATTCGGTGGAGTTGAAAGTAGAGGAAGAAACATGGTTTGTGGAGGTGAGTTATAATGAGCATCTCGACTATGGGTGGTTCACTGAAGGCTGGCAAGAATTTGTAAGAGATTGCAAAGTAAAGACCGGAGACACTTGCTTGTTTGAGATGATTGATGTGCAAAATCATGTGTTCAAGGTTTCAATTGTTTGA

Protein sequence

>MS.gene31885.t1

MSSVHYGRGSEAKGMHFYQTIQLCELQDEELMIPRKFVERHWKDVSNPTSLRLPNGSEFKMNWVQRGDDVWLQNWKRFARSLRCGDLLVFQYKGGSDFHVIILDDSSLEIDYSCMRCNDEQEAKESDDDDDCVEIPNDHENTQQPLKKKKINSNDIATSAATPQGTNIGKRKININASLQKVSEANRNCGGRGKKAKKCTKTKDRNERSFTNYHPNGSPSFTVKLSPYHIEGYNRLIIPRWFSKEYMNELLQQKATIRSVGEDRAWYVTLYFDKSKSSFIMQVGWKSFSKEHDLKVGDVCKFEMTQRKPLSFTITIIPATKEPCPEQFQADSVSPNLHDKFKVFVTSFDKLVVLPSELLKRHNIFSGNLVELKAEEGTWFVEVNYDQHLDHGWFTKGWQEFMRDRKVKIGDTCLFEMIDVQNHVFKKKKTNTNESTATPQGTSIGKIKYHMNATQQKVSEANRIRGGSGKKANKYTKSKDGNERSYTNSQANENPNFTLKLSRSDVEGDRLKLAVDMQKTTTPNKIRDDARRRYGIYSVSPNLHDKFKVFVTSLDKLVVLPSELLKRHDIFSGNSVELKVEEETWFVEVSYNEHLDYGWFTEGWQEFVRDCKVKTGDTCLFEMIDVQNHVFKVSIV