AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31885

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31885.t1 MTR_6g061070 69.165 467 101 4 1 426 2 466 0.0 638
MS.gene31885.t1 MTR_6g061070 80.808 99 18 1 538 636 373 470 1.38e-46 171
MS.gene31885.t1 MTR_6g061070 37.788 217 84 6 427 636 149 321 1.84e-25 110
MS.gene31885.t1 MTR_1g035480 68.783 189 33 2 1 183 1 169 3.88e-83 259
MS.gene31885.t1 MTR_1g033740 67.914 187 38 2 2 183 7 176 1.64e-82 258
MS.gene31885.t1 MTR_1g035500 62.234 188 48 2 2 183 10 180 1.71e-76 242
MS.gene31885.t1 MTR_1g035520 48.220 309 125 8 32 317 87 383 2.90e-76 248
MS.gene31885.t1 MTR_1g035520 53.241 216 57 6 425 636 208 383 7.22e-56 194
MS.gene31885.t1 MTR_1g035520 64.567 127 44 1 301 426 253 379 1.76e-46 169
MS.gene31885.t1 MTR_1g035570 36.543 405 223 12 26 425 14 389 2.91e-65 220
MS.gene31885.t1 MTR_1g035570 43.478 92 44 3 547 636 309 394 3.96e-13 72.0
MS.gene31885.t1 MTR_1g035620 34.793 434 222 12 17 426 9 405 1.21e-61 211
MS.gene31885.t1 MTR_1g035640 40.193 311 148 8 26 330 14 292 8.78e-56 196
MS.gene31885.t1 MTR_1g035470 65.278 144 24 2 32 170 1 123 1.54e-54 182
MS.gene31885.t1 MTR_1g035510 58.974 156 43 2 32 183 1 139 9.63e-54 183
MS.gene31885.t1 MTR_1g050845 33.249 394 193 11 17 387 9 355 1.35e-43 167
MS.gene31885.t1 MTR_1g035650 39.269 219 103 6 17 232 9 200 1.29e-36 136
MS.gene31885.t1 MTR_5g044670 29.096 354 202 11 2 340 5 324 3.05e-36 139
MS.gene31885.t1 MTR_1g035490 37.872 235 113 9 216 425 97 323 1.33e-35 137
MS.gene31885.t1 MTR_1g035490 43.617 94 47 4 544 636 240 328 4.63e-15 77.4
MS.gene31885.t1 MTR_1g035540 83.784 74 11 1 283 356 31 103 6.93e-35 129
MS.gene31885.t1 MTR_3g098790 31.077 325 179 14 11 320 7 301 1.38e-32 128
MS.gene31885.t1 MTR_7g050720 31.804 327 187 13 9 317 2 310 1.16e-30 123
MS.gene31885.t1 MTR_7g050560 30.476 315 185 8 11 320 7 292 9.62e-30 120
MS.gene31885.t1 MTR_7g050580 29.022 317 187 10 11 320 7 292 1.08e-29 120
MS.gene31885.t1 MTR_8g103940 24.524 473 275 15 15 425 37 489 8.93e-29 120
MS.gene31885.t1 MTR_7g050710 28.308 325 198 8 10 320 6 309 3.61e-28 115
MS.gene31885.t1 MTR_1g108780 28.344 314 195 11 33 334 13 308 4.19e-28 118
MS.gene31885.t1 MTR_4g119990 28.829 333 205 14 12 330 10 324 1.56e-27 115
MS.gene31885.t1 MTR_7g050590 29.492 295 189 7 32 320 1 282 6.45e-27 111
MS.gene31885.t1 MTR_6g043890 30.363 303 184 12 14 308 12 295 1.59e-26 111
MS.gene31885.t1 MTR_3g061350 28.571 315 167 12 17 316 12 283 2.14e-24 103
MS.gene31885.t1 MTR_3g061370 26.730 318 183 10 10 316 2 280 2.11e-23 100
MS.gene31885.t1 MTR_1g035460 27.124 306 195 10 32 323 1 292 3.29e-23 102
MS.gene31885.t1 MTR_3g061320 26.899 316 188 13 7 317 2 279 1.13e-22 99.0
MS.gene31885.t1 MTR_3g061310 26.384 307 189 11 15 316 10 284 1.45e-22 98.6
MS.gene31885.t1 MTR_3g061340 25.857 321 180 13 7 317 2 274 1.64e-21 95.5
MS.gene31885.t1 MTR_3g061290 34.507 142 88 3 15 153 10 149 1.70e-18 84.7
MS.gene31885.t1 MTR_1g035440 43.689 103 54 2 14 112 12 114 1.74e-17 82.8
MS.gene31885.t1 MTR_3g005460 23.030 330 182 11 1 317 246 516 7.71e-17 84.3
MS.gene31885.t1 MTR_3g061330 30.952 168 102 4 7 162 2 167 1.44e-16 80.5
MS.gene31885.t1 MTR_1g021330 25.378 331 198 13 15 304 24 346 4.56e-15 77.8
MS.gene31885.t1 MTR_3g005420 26.129 310 165 12 16 320 288 538 7.79e-15 78.2
MS.gene31885.t1 MTR_3g061220 36.207 116 61 4 15 129 10 113 8.09e-15 71.6
MS.gene31885.t1 MTR_3g005490 22.430 321 168 9 9 320 13 261 1.39e-14 74.7
MS.gene31885.t1 MTR_7g050640 37.000 100 60 2 11 107 7 106 2.14e-14 70.5
MS.gene31885.t1 MTR_1g021440 23.193 332 206 11 15 304 21 345 3.66e-14 75.1
MS.gene31885.t1 MTR_3g005495 38.000 100 59 2 16 112 242 341 1.38e-13 73.9
MS.gene31885.t1 MTR_3g005480 33.962 106 67 2 10 112 14 119 2.09e-13 71.2
MS.gene31885.t1 MTR_5g070440 32.381 105 68 2 11 112 15 119 2.69e-12 68.2
MS.gene31885.t1 MTR_1g021400 22.468 316 214 9 15 304 28 338 3.31e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31885.t1 AT3G18990 24.850 334 210 12 17 315 6 333 1.91e-19 90.5
MS.gene31885.t1 AT3G18990 24.850 334 210 12 17 315 6 333 3.14e-19 90.5
MS.gene31885.t1 AT4G33280 24.684 316 205 13 18 317 20 318 4.11e-13 71.6

Find 111 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATAATTTGAGAGTGAAAT+TGG 0.170501 1.2:-19798148 None:intergenic
CATTCAACTTTGTGAATTGC+AGG 0.285867 1.2:+19793999 MS.gene31885:CDS
GGGCATGGTTCCTTTGTGGC+TGG 0.290615 1.2:-19796504 None:intergenic
TATATTGGATGATAGTAGTT+TGG 0.295324 1.2:+19795246 MS.gene31885:CDS
TTGAATTTGTCATGTAAATT+CGG 0.311912 1.2:-19796746 None:intergenic
TTGAATTTGTCATGTAAATT+CGG 0.311912 1.2:-19798514 None:intergenic
TATAATGAGCATCTCGACTA+TGG 0.312686 1.2:+19798747 MS.gene31885:CDS
AAAAGACATGATATATTTAG+TGG 0.333899 1.2:+19798672 MS.gene31885:CDS
TATATTTAGTGGAAATTTAG+TGG 0.337369 1.2:+19796916 MS.gene31885:CDS
GGAAGGTGATAGATTAAAAT+TGG 0.340370 1.2:+19798182 MS.gene31885:CDS
AAGAGACATAATATATTTAG+TGG 0.341164 1.2:+19796905 MS.gene31885:CDS
GGTCTGAGTTCAAAATGAAT+TGG 0.350012 1.2:+19795110 MS.gene31885:CDS
ATTCACAAAGTTGAATGGTT+TGG 0.365673 1.2:-19793993 None:intergenic
TACAACGCGGTGACGATGTT+TGG 0.370214 1.2:+19795134 MS.gene31885:CDS
TTATAACCTTCAATGTGATA+TGG 0.376198 1.2:-19795869 None:intergenic
CTCTGGGCATGGTTCCTTTG+TGG 0.384680 1.2:-19796508 None:intergenic
AATCTGACCCTCCTTTGTAT+TGG 0.385935 1.2:-19795213 None:intergenic
CTGCAATTCACAAAGTTGAA+TGG 0.392583 1.2:-19793998 None:intergenic
GACGATGCCAGAAGAAGATA+TGG 0.392753 1.2:+19798326 MS.gene31885:CDS
TGATATATTTAGTGGAAATT+CGG 0.394530 1.2:+19798680 MS.gene31885:CDS
ACATATTCCATATCTTCTTC+TGG 0.395565 1.2:-19798333 None:intergenic
GGCATGGTTCCTTTGTGGCT+GGG 0.402651 1.2:-19796503 None:intergenic
ACGATGTTTGGCTTCAGAAC+TGG 0.404512 1.2:+19795146 MS.gene31885:CDS
CATTGAAGGTTATAATAGAT+TGG 0.414338 1.2:+19795877 MS.gene31885:CDS
CGTGCAAAATCATGTATTCA+AGG 0.415158 1.2:+19797084 MS.gene31885:CDS
GAAATACCTTGAAACTGCTC+TGG 0.423422 1.2:-19796525 None:intergenic
TATTCTTTCGAAAACCATCT+AGG 0.429204 1.2:-19796267 None:intergenic
AGTGAAATTGGGATTCTCAT+TGG 0.431716 1.2:-19798136 None:intergenic
ATAGTAATTGTGAATGAAAG+TGG 0.438268 1.2:-19796477 None:intergenic
TATGATCAACATCTCGATCA+TGG 0.447909 1.2:+19796980 MS.gene31885:CDS
CTCAAACAAGCAAGTGTCTC+CGG 0.453496 1.2:-19798820 None:intergenic
TTAGAAGTGTTGGTGAGGAC+AGG 0.455257 1.2:+19796322 MS.gene31885:CDS
GTCTGAGTTCAAAATGAATT+GGG 0.455385 1.2:+19795111 MS.gene31885:CDS
GAATTTACATGACAAATTCA+AGG 0.456040 1.2:+19796748 MS.gene31885:CDS
GAATTTACATGACAAATTCA+AGG 0.456040 1.2:+19798516 MS.gene31885:CDS
TTATCGCCATATCACATTGA+AGG 0.463256 1.2:+19795863 MS.gene31885:CDS
CTAATAGAAACTGTGGAGGC+CGG 0.465574 1.2:+19795744 MS.gene31885:CDS
GATAATTTGAGAGTGAAATT+GGG 0.465805 1.2:-19798147 None:intergenic
AGAGATCGCAAAGTGAAGAT+TGG 0.467048 1.2:+19797034 MS.gene31885:CDS
AAGGAACATGACTTGAAAGT+TGG 0.470859 1.2:+19796420 MS.gene31885:CDS
TGTCTCTCTACGAATTTCCT+TGG 0.471061 1.2:-19795043 None:intergenic
TAATAGAAACTGTGGAGGCC+GGG 0.483673 1.2:+19795745 MS.gene31885:CDS
TCAATGTCAAGTGTTCACTA+TGG 0.491973 1.2:+19793937 None:intergenic
TGTCTCTTCAACAGCTCACT+TGG 0.493789 1.2:-19796890 None:intergenic
TGAAACAGATAATACCTAGA+TGG 0.494737 1.2:+19796253 MS.gene31885:intron
AGCAGTGCTCTCATTTGTGT+TGG 0.497625 1.2:-19797795 None:intergenic
GTGGAGTTGAAAGCAGAAGA+AGG 0.502821 1.2:+19796935 MS.gene31885:CDS
AGAGGAAGAAACATGGTTTG+TGG 0.504030 1.2:+19798716 MS.gene31885:CDS
TCACAAATTATCATCCCAAT+GGG 0.508213 1.2:+19795819 MS.gene31885:CDS
TTGCCAATGTTTGTCCCTTG+AGG 0.510253 1.2:-19795430 None:intergenic
TTCACAAATTATCATCCCAA+TGG 0.514529 1.2:+19795818 MS.gene31885:CDS
ACATCGCTTAGACTTCCAAA+TGG 0.515725 1.2:+19795088 MS.gene31885:CDS
CCATGCCCAGAGCAGTTTCA+AGG 0.516067 1.2:+19796519 MS.gene31885:CDS
TGGACGTGGGAGTGAAGCTA+AGG 0.519368 1.2:+19793957 MS.gene31885:CDS
TGTGCAAAATCATGTGTTCA+AGG 0.521657 1.2:+19798851 MS.gene31885:CDS
GGAAATTCGTAGAGAGACAT+TGG 0.530097 1.2:+19795047 MS.gene31885:CDS
TTTGGAAGTCTAAGCGATGT+TGG 0.531226 1.2:-19795085 None:intergenic
TTTGGCTTCAGAACTGGAAG+AGG 0.532764 1.2:+19795152 MS.gene31885:CDS
CAAATTATCGCGATCCGATG+TGG 0.533971 1.2:+19798161 MS.gene31885:CDS
CCTTGAAACTGCTCTGGGCA+TGG 0.538312 1.2:-19796519 None:intergenic
GAGAGCACTGCTACACCTCA+AGG 0.538359 1.2:+19797806 MS.gene31885:CDS
CAATGATGAACAAGAAGCTA+AGG 0.539148 1.2:+19795294 MS.gene31885:CDS
ACACCTCAAGGGACAAGCAT+TGG 0.540284 1.2:+19797818 MS.gene31885:CDS
GATCATGGGTGGTTCACTAA+AGG 0.540814 1.2:+19796995 MS.gene31885:CDS
AGAAGAAGGAACATGGTTTG+TGG 0.547977 1.2:+19796949 MS.gene31885:CDS
ATTTCTTAGCTTTCTTACCC+CGG 0.551754 1.2:-19795763 None:intergenic
AATAGAAACTGTGGAGGCCG+GGG 0.552110 1.2:+19795746 MS.gene31885:CDS
GACTATGGGTGGTTCACTGA+AGG 0.552574 1.2:+19798762 MS.gene31885:CDS
ACTAGTGCTGCTACACCTCA+AGG 0.555707 1.2:+19795415 MS.gene31885:CDS
CATCGCTTAGACTTCCAAAT+GGG 0.555762 1.2:+19795089 MS.gene31885:CDS
TTGCCAATGCTTGTCCCTTG+AGG 0.556750 1.2:-19797821 None:intergenic
ATGATCAACATCTCGATCAT+GGG 0.558223 1.2:+19796981 MS.gene31885:CDS
ATGGGTGGTTCACTGAAGGC+TGG 0.558556 1.2:+19798766 MS.gene31885:CDS
TGTTCTTGCAGATGATTCCA+AGG 0.559130 1.2:+19795026 MS.gene31885:intron
TTCGGTGGAGTTGAAAGTAG+AGG 0.559890 1.2:+19798698 MS.gene31885:CDS
TATATTTAGTGGAAATTCGG+TGG 0.560367 1.2:+19798683 MS.gene31885:CDS
TAGAAGTGTTGGTGAGGACA+GGG 0.562489 1.2:+19796323 MS.gene31885:CDS
ATAATGAGCATCTCGACTAT+GGG 0.562604 1.2:+19798748 MS.gene31885:CDS
AGAGATTGCAAAGTAAAGAC+CGG 0.565440 1.2:+19798801 MS.gene31885:CDS
GATAATTTGACAGTGAAACT+AGG 0.566923 1.2:-19795845 None:intergenic
TCAAGTGTTCACTATGGACG+TGG 0.567496 1.2:+19793943 MS.gene31885:CDS
GCAGAGGCTAATAGAATCAG+AGG 0.568365 1.2:+19798039 MS.gene31885:intron
CTCACCAACACTTCTAATTG+TGG 0.571224 1.2:-19796316 None:intergenic
AAGGCCACAATTAGAAGTGT+TGG 0.571434 1.2:+19796312 MS.gene31885:CDS
AATAGAATCAGAGGAGGCAG+TGG 0.572767 1.2:+19798048 MS.gene31885:CDS
GTGAAACTAGGACTCCCATT+GGG 0.573485 1.2:-19795833 None:intergenic
ACACCTCAAGGGACAAACAT+TGG 0.575666 1.2:+19795427 MS.gene31885:CDS
TTTGCGCGCTCTCTCAGATG+TGG 0.586381 1.2:+19795175 MS.gene31885:CDS
AGTGAAACTAGGACTCCCAT+TGG 0.586614 1.2:-19795834 None:intergenic
ATGGGTGGTTCACTAAAGGT+TGG 0.588689 1.2:+19796999 MS.gene31885:CDS
AAATACCTTGAAACTGCTCT+GGG 0.589681 1.2:-19796524 None:intergenic
TGAAAGTAGAGGAAGAAACA+TGG 0.594057 1.2:+19798709 MS.gene31885:CDS
CACAATTAGAAGTGTTGGTG+AGG 0.602624 1.2:+19796317 MS.gene31885:CDS
TGAAAGCAGAAGAAGGAACA+TGG 0.607559 1.2:+19796942 MS.gene31885:CDS
TAATCTATCACCTTCCACAT+CGG 0.613942 1.2:-19798175 None:intergenic
TTATCGCGATCCGATGTGGA+AGG 0.627051 1.2:+19798165 MS.gene31885:CDS
ATCAACATCTCGATCATGGG+TGG 0.629808 1.2:+19796984 MS.gene31885:CDS
GGACGTGGGAGTGAAGCTAA+GGG 0.640577 1.2:+19793958 MS.gene31885:CDS
AGAGCACTGCTACACCTCAA+GGG 0.641527 1.2:+19797807 MS.gene31885:CDS
GCAGAGGCTAATAGAAACTG+TGG 0.644824 1.2:+19795737 MS.gene31885:intron
TACTATTATCCCAGCCACAA+AGG 0.646969 1.2:+19796494 MS.gene31885:CDS
GAATGAGTTATTGCAACAGA+AGG 0.647927 1.2:+19796293 MS.gene31885:CDS
GTGTTGGTGAGGACAGGGCA+TGG 0.648324 1.2:+19796328 MS.gene31885:CDS
ATGAGCATCTCGACTATGGG+TGG 0.648558 1.2:+19798751 MS.gene31885:CDS
GGAAGAAACATGGTTTGTGG+AGG 0.653505 1.2:+19798719 MS.gene31885:CDS
CTAGTGCTGCTACACCTCAA+GGG 0.659036 1.2:+19795416 MS.gene31885:CDS
AGAAGGAACATGGTTTGTGG+AGG 0.660933 1.2:+19796952 MS.gene31885:CDS
GAGGCTAATAGAATCAGAGG+AGG 0.693921 1.2:+19798042 MS.gene31885:intron
GAGGCTAATAGAAACTGTGG+AGG 0.696340 1.2:+19795740 MS.gene31885:intron
CAAGTGTTCACTATGGACGT+GGG 0.700697 1.2:+19793944 MS.gene31885:CDS
AAAATGAATTGGGTACAACG+CGG 0.771281 1.2:+19795121 MS.gene31885:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTTATTCAATAATTAAAT+TGG - chr1.2:19794161-19794180 None:intergenic 10.0%
!! GTTTATTCAATAATTAAATT+GGG - chr1.2:19794160-19794179 None:intergenic 10.0%
!!! TTTAGGTATATTTTAATTAT+TGG + chr1.2:19796160-19796179 MS.gene31885:intron 10.0%
!!! AATTATTTTCAGCATTTAAA+AGG - chr1.2:19798008-19798027 None:intergenic 15.0%
!!! AGTTTTTGAAATTAAATTCA+TGG + chr1.2:19794744-19794763 MS.gene31885:intron 15.0%
!!! GTTTACTAAAAAAAAAGTAT+AGG - chr1.2:19798215-19798234 None:intergenic 15.0%
!!! TAATTTAATTTTTTTTGCAG+AGG + chr1.2:19798023-19798042 MS.gene31885:intron 15.0%
!!! TATTGAATAAACTTTGTTAT+TGG + chr1.2:19794168-19794187 MS.gene31885:intron 15.0%
!! AAAAGACATGATATATTTAG+TGG + chr1.2:19798672-19798691 MS.gene31885:CDS 20.0%
!! AAATACACAAAAAGTAAAGA+TGG + chr1.2:19798084-19798103 MS.gene31885:CDS 20.0%
!! AAGAGACATAATATATTTAG+TGG + chr1.2:19796905-19796924 MS.gene31885:CDS 20.0%
!! AATACACAAAAAGTAAAGAT+GGG + chr1.2:19798085-19798104 MS.gene31885:CDS 20.0%
!! AATTTGTATGCATTAAAAAG+TGG - chr1.2:19795541-19795560 None:intergenic 20.0%
!! ACATTGACAAAAATGTTATT+AGG + chr1.2:19795507-19795526 MS.gene31885:intron 20.0%
!! AGTAGTATGTTTACATTATT+TGG - chr1.2:19798241-19798260 None:intergenic 20.0%
!! TAAAAAATACGTAAATACAG+CGG - chr1.2:19795600-19795619 None:intergenic 20.0%
!! TACGGATTTATTATCATTAA+TGG + chr1.2:19794369-19794388 MS.gene31885:intron 20.0%
!! TATATTTAGTGGAAATTTAG+TGG + chr1.2:19796916-19796935 MS.gene31885:CDS 20.0%
!! TATTTACAAGAGAAACATTT+GGG - chr1.2:19796009-19796028 None:intergenic 20.0%
!! TGATATATTTAGTGGAAATT+CGG + chr1.2:19798680-19798699 MS.gene31885:CDS 20.0%
!! TTGAATTTGTCATGTAAATT+CGG - chr1.2:19796749-19796768 None:intergenic 20.0%
!!! AGATTTTCATGTCATTATAT+TGG + chr1.2:19795231-19795250 MS.gene31885:CDS 20.0%
!!! ATCATGTGTAACAAATTTTA+AGG + chr1.2:19796607-19796626 MS.gene31885:intron 20.0%
!!! CAAAATTTTAGGTAGAAATT+GGG - chr1.2:19794327-19794346 None:intergenic 20.0%
!!! GTTTTTAGTGTCAAAATTTT+AGG - chr1.2:19794338-19794357 None:intergenic 20.0%
!!! TCAAAATTTTAGGTAGAAAT+TGG - chr1.2:19794328-19794347 None:intergenic 20.0%
!!! TTATAATTGCTTTGATTTGA+TGG + chr1.2:19794241-19794260 MS.gene31885:intron 20.0%
!!! TTTTGAAATTAAATTCATGG+AGG + chr1.2:19794747-19794766 MS.gene31885:intron 20.0%
! AAAAAATACGTAAATACAGC+GGG - chr1.2:19795599-19795618 None:intergenic 25.0%
! AAGTAACAATAGAGACATTT+AGG + chr1.2:19796143-19796162 MS.gene31885:intron 25.0%
! AATGATAATAAATCCGTACA+TGG - chr1.2:19794367-19794386 None:intergenic 25.0%
! AATGCACAAAAACTAAAGAT+AGG + chr1.2:19795783-19795802 MS.gene31885:CDS 25.0%
! AATTGGGTCAATGATTAAAA+TGG - chr1.2:19794144-19794163 None:intergenic 25.0%
! ACTAACAGAAAACATATTCA+AGG + chr1.2:19796047-19796066 MS.gene31885:intron 25.0%
! AGAACAAAGAAAACAGTTTA+AGG - chr1.2:19798471-19798490 None:intergenic 25.0%
! ATAGTAATTGTGAATGAAAG+TGG - chr1.2:19796480-19796499 None:intergenic 25.0%
! ATGGAAAATTAGCATAGATT+GGG - chr1.2:19797469-19797488 None:intergenic 25.0%
! ATTGGGTCAATGATTAAAAT+GGG - chr1.2:19794143-19794162 None:intergenic 25.0%
! ATTTACAAGAGAAACATTTG+GGG - chr1.2:19796008-19796027 None:intergenic 25.0%
! CATTAATGGAATTCATCATT+TGG + chr1.2:19794383-19794402 MS.gene31885:intron 25.0%
! CATTGAAGGTTATAATAGAT+TGG + chr1.2:19795877-19795896 MS.gene31885:CDS 25.0%
! CATTTCTAATTGAAACTCAT+TGG + chr1.2:19794993-19795012 MS.gene31885:intron 25.0%
! CTATTTACAAGAGAAACATT+TGG - chr1.2:19796010-19796029 None:intergenic 25.0%
! GAATTTACATGACAAATTCA+AGG + chr1.2:19796748-19796767 MS.gene31885:CDS 25.0%
! GATAATTTGAGAGTGAAATT+GGG - chr1.2:19798150-19798169 None:intergenic 25.0%
! GATTGATTATCAAAATCATG+TGG + chr1.2:19797299-19797318 MS.gene31885:intron 25.0%
! TACAAGAAATCTGAACTAAT+TGG - chr1.2:19794823-19794842 None:intergenic 25.0%
! TACTTCAATAATCGAAAGAA+TGG - chr1.2:19794076-19794095 None:intergenic 25.0%
! TATATTGGATGATAGTAGTT+TGG + chr1.2:19795246-19795265 MS.gene31885:CDS 25.0%
! TGTTTGATACATATATGCTT+TGG + chr1.2:19794879-19794898 MS.gene31885:intron 25.0%
! TTATAACCTTCAATGTGATA+TGG - chr1.2:19795872-19795891 None:intergenic 25.0%
! TTTGTTCTTATATATGCAGT+TGG + chr1.2:19798626-19798645 MS.gene31885:intron 25.0%
!! TTCTCTTGTAAATAGTCTTA+TGG + chr1.2:19796015-19796034 MS.gene31885:intron 25.0%
!! TTGATTTTCTTTTTCTTGAG+GGG - chr1.2:19795379-19795398 None:intergenic 25.0%
!! TTTTGTAACATCATTAGACA+AGG + chr1.2:19798540-19798559 MS.gene31885:CDS 25.0%
!!! AGTTGATTTTCTTTTTCTTG+AGG - chr1.2:19795381-19795400 None:intergenic 25.0%
!!! CTTTTAGTTTTCCAATACAA+AGG + chr1.2:19795202-19795221 MS.gene31885:CDS 25.0%
!!! GTTGATTTTCTTTTTCTTGA+GGG - chr1.2:19795380-19795399 None:intergenic 25.0%
!!! TAGTTTTTAAAGTTTTGCAG+AGG + chr1.2:19795721-19795740 MS.gene31885:intron 25.0%
AATCATACCAACTCTTTAAG+TGG + chr1.2:19794633-19794652 MS.gene31885:intron 30.0%
AATCGAAAGAATGGATGAAA+TGG - chr1.2:19794067-19794086 None:intergenic 30.0%
ACATATTCCATATCTTCTTC+TGG - chr1.2:19798336-19798355 None:intergenic 30.0%
ATAAGTATATGTAACGTGCA+TGG - chr1.2:19796194-19796213 None:intergenic 30.0%
ATCTAGGTATTATCTGTTTC+AGG - chr1.2:19796254-19796273 None:intergenic 30.0%
ATTATCAAAATCATGTGGTC+AGG + chr1.2:19797304-19797323 MS.gene31885:intron 30.0%
ATTCACAAAGTTGAATGGTT+TGG - chr1.2:19793996-19794015 None:intergenic 30.0%
CAAACATTCTTCTAAACATC+TGG - chr1.2:19797121-19797140 None:intergenic 30.0%
CATGGAAAATTAGCATAGAT+TGG - chr1.2:19797470-19797489 None:intergenic 30.0%
CGATAATTTGAGAGTGAAAT+TGG - chr1.2:19798151-19798170 None:intergenic 30.0%
GAATACGAAGATTTGAATGT+TGG + chr1.2:19794198-19794217 MS.gene31885:intron 30.0%
GATAATTTGACAGTGAAACT+AGG - chr1.2:19795848-19795867 None:intergenic 30.0%
GGAAGGTGATAGATTAAAAT+TGG + chr1.2:19798182-19798201 MS.gene31885:CDS 30.0%
GTAGTATGTTTACATTGACA+AGG - chr1.2:19796643-19796662 None:intergenic 30.0%
GTCTGAGTTCAAAATGAATT+GGG + chr1.2:19795111-19795130 MS.gene31885:CDS 30.0%
TAAAAACAAACAGCCATGTA+CGG + chr1.2:19794351-19794370 MS.gene31885:intron 30.0%
TAAGATAATTTCACTGTCGT+TGG - chr1.2:19797753-19797772 None:intergenic 30.0%
TAATGGAATTCATCATTTGG+TGG + chr1.2:19794386-19794405 MS.gene31885:intron 30.0%
TATATTTAGTGGAAATTCGG+TGG + chr1.2:19798683-19798702 MS.gene31885:CDS 30.0%
TATTCTTTCGAAAACCATCT+AGG - chr1.2:19796270-19796289 None:intergenic 30.0%
TCACAAATTATCATCCCAAT+GGG + chr1.2:19795819-19795838 MS.gene31885:CDS 30.0%
TGAAACAGATAATACCTAGA+TGG + chr1.2:19796253-19796272 MS.gene31885:intron 30.0%
TTATCAAAATCATGTGGTCA+GGG + chr1.2:19797305-19797324 MS.gene31885:intron 30.0%
TTCACAAATTATCATCCCAA+TGG + chr1.2:19795818-19795837 MS.gene31885:CDS 30.0%
TTTGTTCTTATATATGCAGC+TGG + chr1.2:19796859-19796878 MS.gene31885:intron 30.0%
! ATGGAATATGTGAGCAATTT+TGG + chr1.2:19798345-19798364 MS.gene31885:intron 30.0%
! CATGATCAAAACAGTATTGA+GGG - chr1.2:19794696-19794715 None:intergenic 30.0%
! GTTCACGTCTTGAATTTTAA+TGG - chr1.2:19795655-19795674 None:intergenic 30.0%
! TAGTTTTCCAATACAAAGGA+GGG + chr1.2:19795206-19795225 MS.gene31885:CDS 30.0%
! TGGGTATTTTCATGATCATT+CGG - chr1.2:19795352-19795371 None:intergenic 30.0%
! TTTTGTAACATCATTCGACA+AGG + chr1.2:19796772-19796791 MS.gene31885:CDS 30.0%
!! AGAGGCTTTCATTTTTCTAT+AGG + chr1.2:19795953-19795972 MS.gene31885:intron 30.0%
!! TAATTGCTTTGATTTGATGG+AGG + chr1.2:19794244-19794263 MS.gene31885:intron 30.0%
!! TTAGTTTTCCAATACAAAGG+AGG + chr1.2:19795205-19795224 MS.gene31885:CDS 30.0%
!! TTGGTTTTCTTTTTCTTCAG+GGG - chr1.2:19797779-19797798 None:intergenic 30.0%
!!! ATCTGGTTTTCTTAGGTATT+TGG + chr1.2:19794285-19794304 MS.gene31885:intron 30.0%
!!! GTTGGTTTTCTTTTTCTTCA+GGG - chr1.2:19797780-19797799 None:intergenic 30.0%
!!! TGTTGGTTTTCTTTTTCTTC+AGG - chr1.2:19797781-19797800 None:intergenic 30.0%
AAAATGAATTGGGTACAACG+CGG + chr1.2:19795121-19795140 MS.gene31885:CDS 35.0%
AAACAGTCCACTTAAAGAGT+TGG - chr1.2:19794643-19794662 None:intergenic 35.0%
AAATACCTTGAAACTGCTCT+GGG - chr1.2:19796527-19796546 None:intergenic 35.0%
AAATGATAAAAAGGGCAACC+CGG - chr1.2:19794584-19794603 None:intergenic 35.0%
AAGGAACATGACTTGAAAGT+TGG + chr1.2:19796420-19796439 MS.gene31885:CDS 35.0%
ACTGATTAAGCAAACTGTGT+TGG - chr1.2:19794907-19794926 None:intergenic 35.0%
AGAGATTGCAAAGTAAAGAC+CGG + chr1.2:19798801-19798820 MS.gene31885:CDS 35.0%
AGCACTCATATTTCATAGAG+TGG - chr1.2:19797406-19797425 None:intergenic 35.0%
AGCTCCACCAAATGATAAAA+AGG - chr1.2:19794593-19794612 None:intergenic 35.0%
AGTGAAATTGGGATTCTCAT+TGG - chr1.2:19798139-19798158 None:intergenic 35.0%
ATAATGAGCATCTCGACTAT+GGG + chr1.2:19798748-19798767 MS.gene31885:CDS 35.0%
ATGATCAACATCTCGATCAT+GGG + chr1.2:19796981-19797000 MS.gene31885:CDS 35.0%
ATGTTGCATACTTGCTTATC+TGG + chr1.2:19794268-19794287 MS.gene31885:intron 35.0%
ATTCTACACATTCACACACA+TGG - chr1.2:19796834-19796853 None:intergenic 35.0%
CAATGATGAACAAGAAGCTA+AGG + chr1.2:19795294-19795313 MS.gene31885:CDS 35.0%
CACACACATGGCTATATAAA+TGG - chr1.2:19796822-19796841 None:intergenic 35.0%
CAGTTAGGTACAAATATTGC+TGG - chr1.2:19795929-19795948 None:intergenic 35.0%
CATTCAACTTTGTGAATTGC+AGG + chr1.2:19793999-19794018 MS.gene31885:CDS 35.0%
CCATGATCAAAACAGTATTG+AGG - chr1.2:19794697-19794716 None:intergenic 35.0%
CGTGCAAAATCATGTATTCA+AGG + chr1.2:19797084-19797103 MS.gene31885:CDS 35.0%
CTGATTAAGCAAACTGTGTT+GGG - chr1.2:19794906-19794925 None:intergenic 35.0%
CTGCAATTCACAAAGTTGAA+TGG - chr1.2:19794001-19794020 None:intergenic 35.0%
GAATGAGTTATTGCAACAGA+AGG + chr1.2:19796293-19796312 MS.gene31885:CDS 35.0%
GCTCCACCAAATGATAAAAA+GGG - chr1.2:19794592-19794611 None:intergenic 35.0%
GGTCTGAGTTCAAAATGAAT+TGG + chr1.2:19795110-19795129 MS.gene31885:CDS 35.0%
GTAACGAAAGATAAGCAACA+TGG - chr1.2:19797488-19797507 None:intergenic 35.0%
TAATCTATCACCTTCCACAT+CGG - chr1.2:19798178-19798197 None:intergenic 35.0%
TATAATGAGCATCTCGACTA+TGG + chr1.2:19798747-19798766 MS.gene31885:CDS 35.0%
TATGATCAACATCTCGATCA+TGG + chr1.2:19796980-19796999 MS.gene31885:CDS 35.0%
TCTTGTGTAAAAACAGGGTA+AGG + chr1.2:19794492-19794511 MS.gene31885:intron 35.0%
TGAAAGTAGAGGAAGAAACA+TGG + chr1.2:19798709-19798728 MS.gene31885:CDS 35.0%
TGAATGCAAAGTGAAGATTG+AGG + chr1.2:19797254-19797273 MS.gene31885:intron 35.0%
TGTGCAAAATCATGTGTTCA+AGG + chr1.2:19798851-19798870 MS.gene31885:CDS 35.0%
TTATCGCCATATCACATTGA+AGG + chr1.2:19795863-19795882 MS.gene31885:CDS 35.0%
TTTGTACCTAACTGTGTAAG+AGG + chr1.2:19795935-19795954 MS.gene31885:intron 35.0%
! AATATTGTTTGCTAGTGTCG+TGG - chr1.2:19797724-19797743 None:intergenic 35.0%
! ACACAGTTTGCTTAATCAGT+CGG + chr1.2:19794907-19794926 MS.gene31885:intron 35.0%
! ATTTCTTAGCTTTCTTACCC+CGG - chr1.2:19795766-19795785 None:intergenic 35.0%
! ATTTTGAACTCAGACCCATT+TGG - chr1.2:19795106-19795125 None:intergenic 35.0%
! CAGGTAAAGTACATGTTTTC+TGG + chr1.2:19797882-19797901 MS.gene31885:intron 35.0%
! GCATCGTCTCTGATTTTATT+TGG - chr1.2:19798314-19798333 None:intergenic 35.0%
! GGTTTTCTTAGGTATTTGGA+TGG + chr1.2:19794289-19794308 MS.gene31885:intron 35.0%
! GTATTATCTGTTTCAGGTCA+TGG - chr1.2:19796248-19796267 None:intergenic 35.0%
! TGTCTTTTTAACAGCTCACT+TGG - chr1.2:19798660-19798679 None:intergenic 35.0%
! TTGCCCTTTTTATCATTTGG+TGG + chr1.2:19794586-19794605 MS.gene31885:intron 35.0%
! TTTACCTGAGACTTTTTGCT+GGG - chr1.2:19797870-19797889 None:intergenic 35.0%
!! AGCAGTTTTATAATGCAGGT+TGG + chr1.2:19796381-19796400 MS.gene31885:CDS 35.0%
!! CAAGAGCAGTTTTATAATGC+AGG + chr1.2:19796377-19796396 MS.gene31885:CDS 35.0%
!! CTCTTTAAGTGGACTGTTTA+AGG + chr1.2:19794644-19794663 MS.gene31885:intron 35.0%
!! GACTGCATGTTTTTAATCCT+AGG + chr1.2:19795573-19795592 MS.gene31885:intron 35.0%
!! TGGTTGGAAGTCATTTTCAA+AGG + chr1.2:19796401-19796420 MS.gene31885:CDS 35.0%
!!! CCTCAATACTGTTTTGATCA+TGG + chr1.2:19794694-19794713 MS.gene31885:intron 35.0%
!!! CTTGCTTATCTGGTTTTCTT+AGG + chr1.2:19794278-19794297 MS.gene31885:intron 35.0%
!!! GTTTTATAATGCAGGTTGGT+TGG + chr1.2:19796385-19796404 MS.gene31885:CDS 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG - chr1.2:19794493-19794512 None:intergenic 35.0%
AAACCTCAAAGCTTGAAGGA+AGG - chr1.2:19797539-19797558 None:intergenic 40.0%
AACAGAAGCCCAAAAACACA+TGG + chr1.2:19798381-19798400 MS.gene31885:intron 40.0%
AATCTGACCCTCCTTTGTAT+TGG - chr1.2:19795216-19795235 None:intergenic 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG + chr1.2:19794486-19794505 MS.gene31885:intron 40.0%
ACATCGCTTAGACTTCCAAA+TGG + chr1.2:19795088-19795107 MS.gene31885:CDS 40.0%
AGAAGAAGGAACATGGTTTG+TGG + chr1.2:19796949-19796968 MS.gene31885:CDS 40.0%
AGAGATCGCAAAGTGAAGAT+TGG + chr1.2:19797034-19797053 MS.gene31885:CDS 40.0%
AGAGGAAGAAACATGGTTTG+TGG + chr1.2:19798716-19798735 MS.gene31885:CDS 40.0%
CAGCCTCTTGTGTAAAAACA+GGG + chr1.2:19794487-19794506 MS.gene31885:intron 40.0%
CATCGCTTAGACTTCCAAAT+GGG + chr1.2:19795089-19795108 MS.gene31885:CDS 40.0%
CGTACAATACACCAAATGGT+GGG + chr1.2:19794518-19794537 MS.gene31885:intron 40.0%
CGTGAACACATTCAACACAA+AGG - chr1.2:19797564-19797583 None:intergenic 40.0%
CTCACCAACACTTCTAATTG+TGG - chr1.2:19796319-19796338 None:intergenic 40.0%
CTTGGTATTACGAAAGAGTG+AGG - chr1.2:19797513-19797532 None:intergenic 40.0%
GAAATACCTTGAAACTGCTC+TGG - chr1.2:19796528-19796547 None:intergenic 40.0%
GCATCCTTGCAAAAAGTTTC+AGG + chr1.2:19795472-19795491 MS.gene31885:CDS 40.0%
GGAAATTCGTAGAGAGACAT+TGG + chr1.2:19795047-19795066 MS.gene31885:CDS 40.0%
GGTTAAACCTCAAAGCTTGA+AGG - chr1.2:19797543-19797562 None:intergenic 40.0%
GTTGTTGTCATGTGACTGTA+AGG + chr1.2:19794442-19794461 MS.gene31885:intron 40.0%
TACTATTATCCCAGCCACAA+AGG + chr1.2:19796494-19796513 MS.gene31885:CDS 40.0%
TCATCGTTGCATGTCATACT+TGG - chr1.2:19797701-19797720 None:intergenic 40.0%
TCTTGTATTAGTGCTACGCA+TGG + chr1.2:19794836-19794855 MS.gene31885:intron 40.0%
TGAAAGCAGAAGAAGGAACA+TGG + chr1.2:19796942-19796961 MS.gene31885:CDS 40.0%
TGAAAGCCTCTTACACAGTT+AGG - chr1.2:19795944-19795963 None:intergenic 40.0%
TGTCTCTCTACGAATTTCCT+TGG - chr1.2:19795046-19795065 None:intergenic 40.0%
TGTTCTTGCAGATGATTCCA+AGG + chr1.2:19795026-19795045 MS.gene31885:intron 40.0%
TTTGGAAGTCTAAGCGATGT+TGG - chr1.2:19795088-19795107 None:intergenic 40.0%
! AAGGCCACAATTAGAAGTGT+TGG + chr1.2:19796312-19796331 MS.gene31885:CDS 40.0%
! CTTGCCTGAAACTTTTTGCA+AGG - chr1.2:19795479-19795498 None:intergenic 40.0%
! CTTTACCTGAGACTTTTTGC+TGG - chr1.2:19797871-19797890 None:intergenic 40.0%
! CTTTTTCTTGAGGGGTTGTT+GGG - chr1.2:19795371-19795390 None:intergenic 40.0%
! GGGTTGCCCTTTTTATCATT+TGG + chr1.2:19794583-19794602 MS.gene31885:intron 40.0%
! GGTATGATTGAGAGTACAAG+TGG - chr1.2:19794622-19794641 None:intergenic 40.0%
! TCCTGAGACCATGTGTTTTT+GGG - chr1.2:19798392-19798411 None:intergenic 40.0%
! TCTTTTTCTTGAGGGGTTGT+TGG - chr1.2:19795372-19795391 None:intergenic 40.0%
!! CACAATTAGAAGTGTTGGTG+AGG + chr1.2:19796317-19796336 MS.gene31885:CDS 40.0%
!! TTTGCTTTTGATCCCTGACA+AGG + chr1.2:19798262-19798281 MS.gene31885:intron 40.0%
AAGCTTGAAGGAAGGAGACT+TGG - chr1.2:19797531-19797550 None:intergenic 45.0%
AATAGAATCAGAGGAGGCAG+TGG + chr1.2:19798048-19798067 MS.gene31885:CDS 45.0%
ACACCTCAAGGGACAAACAT+TGG + chr1.2:19795427-19795446 MS.gene31885:CDS 45.0%
AGCAGTGCTCTCATTTGTGT+TGG - chr1.2:19797798-19797817 None:intergenic 45.0%
AGTGAAACTAGGACTCCCAT+TGG - chr1.2:19795837-19795856 None:intergenic 45.0%
ATCAACATCTCGATCATGGG+TGG + chr1.2:19796984-19797003 MS.gene31885:CDS 45.0%
ATGGGTGGTTCACTAAAGGT+TGG + chr1.2:19796999-19797018 MS.gene31885:CDS 45.0%
ATTAGTGCTACGCATGGCTT+TGG + chr1.2:19794842-19794861 MS.gene31885:intron 45.0%
CAAATTATCGCGATCCGATG+TGG + chr1.2:19798161-19798180 MS.gene31885:CDS 45.0%
CAAGTGTTCACTATGGACGT+GGG + chr1.2:19793944-19793963 MS.gene31885:CDS 45.0%
CTAATAGAAACTGTGGAGGC+CGG + chr1.2:19795744-19795763 MS.gene31885:CDS 45.0%
CTCAAACAAGCAAGTGTCTC+CGG - chr1.2:19798823-19798842 None:intergenic 45.0%
GACGATGCCAGAAGAAGATA+TGG + chr1.2:19798326-19798345 MS.gene31885:CDS 45.0%
GAGGCTAATAGAAACTGTGG+AGG + chr1.2:19795740-19795759 MS.gene31885:intron 45.0%
GAGGCTAATAGAATCAGAGG+AGG + chr1.2:19798042-19798061 MS.gene31885:intron 45.0%
GATCATGGGTGGTTCACTAA+AGG + chr1.2:19796995-19797014 MS.gene31885:CDS 45.0%
GCAGAGGCTAATAGAAACTG+TGG + chr1.2:19795737-19795756 MS.gene31885:intron 45.0%
GCAGAGGCTAATAGAATCAG+AGG + chr1.2:19798039-19798058 MS.gene31885:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr1.2:19794517-19794536 MS.gene31885:intron 45.0%
GCTGCGTACAATACACCAAA+TGG + chr1.2:19794514-19794533 MS.gene31885:intron 45.0%
GGTATTACGAAAGAGTGAGG+AGG - chr1.2:19797510-19797529 None:intergenic 45.0%
GTCATGTGACTGTAAGGTCA+CGG + chr1.2:19794448-19794467 MS.gene31885:intron 45.0%
GTGAAACTAGGACTCCCATT+GGG - chr1.2:19795836-19795855 None:intergenic 45.0%
GTGGAGTTGAAAGCAGAAGA+AGG + chr1.2:19796935-19796954 MS.gene31885:CDS 45.0%
TAATAGAAACTGTGGAGGCC+GGG + chr1.2:19795745-19795764 MS.gene31885:CDS 45.0%
TCAAGTGTTCACTATGGACG+TGG + chr1.2:19793943-19793962 MS.gene31885:CDS 45.0%
TCATGTGACTGTAAGGTCAC+GGG + chr1.2:19794449-19794468 MS.gene31885:intron 45.0%
TCTCCTTCCTTCAAGCTTTG+AGG + chr1.2:19797533-19797552 MS.gene31885:intron 45.0%
TGTCTCTTCAACAGCTCACT+TGG - chr1.2:19796893-19796912 None:intergenic 45.0%
TTCGGTGGAGTTGAAAGTAG+AGG + chr1.2:19798698-19798717 MS.gene31885:CDS 45.0%
TTGCCAATGTTTGTCCCTTG+AGG - chr1.2:19795433-19795452 None:intergenic 45.0%
! ACGATGTTTGGCTTCAGAAC+TGG + chr1.2:19795146-19795165 MS.gene31885:CDS 45.0%
! AGAAGGAACATGGTTTGTGG+AGG + chr1.2:19796952-19796971 MS.gene31885:CDS 45.0%
! CTCCTGAGACCATGTGTTTT+TGG - chr1.2:19798393-19798412 None:intergenic 45.0%
! GGAAGAAACATGGTTTGTGG+AGG + chr1.2:19798719-19798738 MS.gene31885:CDS 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - chr1.2:19794482-19794501 None:intergenic 45.0%
! TTTGGCTTCAGAACTGGAAG+AGG + chr1.2:19795152-19795171 MS.gene31885:CDS 45.0%
!! TAGAAGTGTTGGTGAGGACA+GGG + chr1.2:19796323-19796342 MS.gene31885:CDS 45.0%
!! TTAGAAGTGTTGGTGAGGAC+AGG + chr1.2:19796322-19796341 MS.gene31885:CDS 45.0%
AATAGAAACTGTGGAGGCCG+GGG + chr1.2:19795746-19795765 MS.gene31885:CDS 50.0%
ACACCTCAAGGGACAAGCAT+TGG + chr1.2:19797818-19797837 MS.gene31885:CDS 50.0%
ATGAGCATCTCGACTATGGG+TGG + chr1.2:19798751-19798770 MS.gene31885:CDS 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr1.2:19794426-19794445 None:intergenic 50.0%
GACTATGGGTGGTTCACTGA+AGG + chr1.2:19798762-19798781 MS.gene31885:CDS 50.0%
GCAACCCAGCAAAAAGTCTC+AGG + chr1.2:19797863-19797882 MS.gene31885:CDS 50.0%
GCCCAAAAACACATGGTCTC+AGG + chr1.2:19798388-19798407 MS.gene31885:intron 50.0%
GTGTTCACGACAGTTATGCG+CGG + chr1.2:19797575-19797594 MS.gene31885:intron 50.0%
TACAACGCGGTGACGATGTT+TGG + chr1.2:19795134-19795153 MS.gene31885:CDS 50.0%
TACGTAAATACAGCGGGCCT+AGG - chr1.2:19795593-19795612 None:intergenic 50.0%
TTATCGCGATCCGATGTGGA+AGG + chr1.2:19798165-19798184 MS.gene31885:CDS 50.0%
TTGCCAATGCTTGTCCCTTG+AGG - chr1.2:19797824-19797843 None:intergenic 50.0%
TTTGATCCCTGACAAGGCTG+TGG + chr1.2:19798268-19798287 MS.gene31885:intron 50.0%
! ACTAGTGCTGCTACACCTCA+AGG + chr1.2:19795415-19795434 MS.gene31885:CDS 50.0%
! ATCATTTGGTGGAGCTCGAG+GGG + chr1.2:19794397-19794416 MS.gene31885:intron 50.0%
! CATCATTTGGTGGAGCTCGA+GGG + chr1.2:19794396-19794415 MS.gene31885:intron 50.0%
! CTAGTGCTGCTACACCTCAA+GGG + chr1.2:19795416-19795435 MS.gene31885:CDS 50.0%
! TCATCATTTGGTGGAGCTCG+AGG + chr1.2:19794395-19794414 MS.gene31885:intron 50.0%
!! AGAGCACTGCTACACCTCAA+GGG + chr1.2:19797807-19797826 MS.gene31885:CDS 50.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr1.2:19794461-19794480 MS.gene31885:intron 55.0%
ATGGGTGGTTCACTGAAGGC+TGG + chr1.2:19798766-19798785 MS.gene31885:CDS 55.0%
CCATGCCCAGAGCAGTTTCA+AGG + chr1.2:19796519-19796538 MS.gene31885:CDS 55.0%
CTCTGGGCATGGTTCCTTTG+TGG - chr1.2:19796511-19796530 None:intergenic 55.0%
GGACGTGGGAGTGAAGCTAA+GGG + chr1.2:19793958-19793977 MS.gene31885:CDS 55.0%
GGCATGGTTCCTTTGTGGCT+GGG - chr1.2:19796506-19796525 None:intergenic 55.0%
TGGACGTGGGAGTGAAGCTA+AGG + chr1.2:19793957-19793976 MS.gene31885:CDS 55.0%
TTTGCGCGCTCTCTCAGATG+TGG + chr1.2:19795175-19795194 MS.gene31885:CDS 55.0%
! CCTTGAAACTGCTCTGGGCA+TGG - chr1.2:19796522-19796541 None:intergenic 55.0%
! GCATGTCCACAGCCTTGTCA+GGG - chr1.2:19798277-19798296 None:intergenic 55.0%
! TGCATGTCCACAGCCTTGTC+AGG - chr1.2:19798278-19798297 None:intergenic 55.0%
!! GAGAGCACTGCTACACCTCA+AGG + chr1.2:19797806-19797825 MS.gene31885:CDS 55.0%
ACTGAAGCTCCCGCATACGC+AGG - chr1.2:19794558-19794577 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG + chr1.2:19794415-19794434 MS.gene31885:intron 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG + chr1.2:19794562-19794581 MS.gene31885:intron 60.0%
CTGAAGCTCCCGCATACGCA+GGG - chr1.2:19794557-19794576 None:intergenic 60.0%
GGGCATGGTTCCTTTGTGGC+TGG - chr1.2:19796507-19796526 None:intergenic 60.0%
TGGAGCTCGAGGGGTAACCT+TGG + chr1.2:19794406-19794425 MS.gene31885:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr1.2:19794530-19794549 MS.gene31885:intron 60.0%
! GTGTTGGTGAGGACAGGGCA+TGG + chr1.2:19796328-19796347 MS.gene31885:CDS 60.0%
CATACGCAGGGTCCGGGAAG+GGG - chr1.2:19794545-19794564 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG - chr1.2:19794532-19794551 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG + chr1.2:19794545-19794564 MS.gene31885:intron 65.0%
GCATACGCAGGGTCCGGGAA+GGG - chr1.2:19794546-19794565 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+GGG + chr1.2:19794563-19794582 MS.gene31885:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG + chr1.2:19794546-19794565 MS.gene31885:intron 65.0%
CGCATACGCAGGGTCCGGGA+AGG - chr1.2:19794547-19794566 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG - chr1.2:19794551-19794570 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG - chr1.2:19794552-19794571 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 19793940 19798887 19793940 ID=MS.gene31885
chr1.2 mRNA 19793940 19798887 19793940 ID=MS.gene31885.t1;Parent=MS.gene31885
chr1.2 exon 19793940 19794032 19793940 ID=MS.gene31885.t1.exon1;Parent=MS.gene31885.t1
chr1.2 CDS 19793940 19794032 19793940 ID=cds.MS.gene31885.t1;Parent=MS.gene31885.t1
chr1.2 exon 19795037 19795493 19795037 ID=MS.gene31885.t1.exon2;Parent=MS.gene31885.t1
chr1.2 CDS 19795037 19795493 19795037 ID=cds.MS.gene31885.t1;Parent=MS.gene31885.t1
chr1.2 exon 19795741 19795898 19795741 ID=MS.gene31885.t1.exon3;Parent=MS.gene31885.t1
chr1.2 CDS 19795741 19795898 19795741 ID=cds.MS.gene31885.t1;Parent=MS.gene31885.t1
chr1.2 exon 19796261 19796540 19796261 ID=MS.gene31885.t1.exon4;Parent=MS.gene31885.t1
chr1.2 CDS 19796261 19796540 19796261 ID=cds.MS.gene31885.t1;Parent=MS.gene31885.t1
chr1.2 exon 19796732 19796793 19796732 ID=MS.gene31885.t1.exon5;Parent=MS.gene31885.t1
chr1.2 CDS 19796732 19796793 19796732 ID=cds.MS.gene31885.t1;Parent=MS.gene31885.t1
chr1.2 exon 19796878 19797105 19796878 ID=MS.gene31885.t1.exon6;Parent=MS.gene31885.t1
chr1.2 CDS 19796878 19797105 19796878 ID=cds.MS.gene31885.t1;Parent=MS.gene31885.t1
chr1.2 exon 19797785 19797884 19797785 ID=MS.gene31885.t1.exon7;Parent=MS.gene31885.t1
chr1.2 CDS 19797785 19797884 19797785 ID=cds.MS.gene31885.t1;Parent=MS.gene31885.t1
chr1.2 exon 19798043 19798203 19798043 ID=MS.gene31885.t1.exon8;Parent=MS.gene31885.t1
chr1.2 CDS 19798043 19798203 19798043 ID=cds.MS.gene31885.t1;Parent=MS.gene31885.t1
chr1.2 exon 19798284 19798353 19798284 ID=MS.gene31885.t1.exon9;Parent=MS.gene31885.t1
chr1.2 CDS 19798284 19798353 19798284 ID=cds.MS.gene31885.t1;Parent=MS.gene31885.t1
chr1.2 exon 19798503 19798561 19798503 ID=MS.gene31885.t1.exon10;Parent=MS.gene31885.t1
chr1.2 CDS 19798503 19798561 19798503 ID=cds.MS.gene31885.t1;Parent=MS.gene31885.t1
chr1.2 exon 19798645 19798887 19798645 ID=MS.gene31885.t1.exon11;Parent=MS.gene31885.t1
chr1.2 CDS 19798645 19798887 19798645 ID=cds.MS.gene31885.t1;Parent=MS.gene31885.t1
Gene Sequence

>MS.gene31885

ATGTCAAGTGTTCACTATGGACGTGGGAGTGAAGCTAAGGGAATGCATTTTTACCAAACCATTCAACTTTGTGAATTGCAGGATGAAGAGCTTGTAAGCATTCTCAATCAGCTTCTTCTTTTTTCCATTTCATCCATTCTTTCGATTATTGAAGTAGCTTTTGTAATTGTGTATCACACTATTTGTTGAAAACACAACGACCCATTTTAATCATTGACCCAATTTAATTATTGAATAAACTTTGTTATTGGAATTAATGAATACGAAGATTTGAATGTTGGTAAGCTCATACATAGTTTTCTTATAATTGCTTTGATTTGATGGAGGAATGTTGCATACTTGCTTATCTGGTTTTCTTAGGTATTTGGATGGAGAGTGTCTCAACCCAATTTCTACCTAAAATTTTGACACTAAAAACAAACAGCCATGTACGGATTTATTATCATTAATGGAATTCATCATTTGGTGGAGCTCGAGGGGTAACCTTGGCGCAACTGGTAAAGTTGTTGTCATGTGACTGTAAGGTCACGGGTTCAAGTCCTGGAAACAGCCTCTTGTGTAAAAACAGGGTAAGGCTGCGTACAATACACCAAATGGTGGGACCCCTTCCCGGACCCTGCGTATGCGGGAGCTTCAGTGCACCGGGTTGCCCTTTTTATCATTTGGTGGAGCTCGTTAACCACTTGTACTCTCAATCATACCAACTCTTTAAGTGGACTGTTTAAGGTTTGTAGTCAATGTGTTTGATGAAAACCCTCAATACTGTTTTGATCATGGTTTCTGTTTAAGAACTAATTTGAGAGCAGTTTTTGAAATTAAATTCATGGAGGAATGTTGCATACTTGCATTATGAGATGACTTGTGTGTATCTACTAGACTTCCAATTAGTTCAGATTTCTTGTATTAGTGCTACGCATGGCTTTGGTTCTAAACTCATTTTGTTTGATACATATATGCTTTGGTCCCAACACAGTTTGCTTAATCAGTCGGTGTATTAATTGAATGAAGTTTGCTGCATTAATCACTTGATGTATGCTTTGCTGCATTAATCTTCATTTCTAATTGAAACTCATTGGTTTTTGAAAATGTTCTTGCAGATGATTCCAAGGAAATTCGTAGAGAGACATTGGAAAGATGTATCAAATCCAACATCGCTTAGACTTCCAAATGGGTCTGAGTTCAAAATGAATTGGGTACAACGCGGTGACGATGTTTGGCTTCAGAACTGGAAGAGGTTTGCGCGCTCTCTCAGATGTGGAGATCTTTTAGTTTTCCAATACAAAGGAGGGTCAGATTTTCATGTCATTATATTGGATGATAGTAGTTTGGAAATTGACTATTCATGTATGAGATGCAATGATGAACAAGAAGCTAAGGAGAGTGATGATGATGATGACTGTGTTGAGATTCCGAATGATCATGAAAATACCCAACAACCCCTCAAGAAAAAGAAAATCAACTCAAATGACATTGCTACTAGTGCTGCTACACCTCAAGGGACAAACATTGGCAAGAGAAAAATTAATATCAATGCATCCTTGCAAAAAGTTTCAGGCAAGTAAATGCAACATTGACAAAAATGTTATTAGGCATTCTATCCACTTTTTAATGCATACAAATTACAATAGTGCATGACTGCATGTTTTTAATCCTAGGCCCGCTGTATTTACGTATTTTTTAATTTTTTAACATTTAATTATTTTTCAAGACTGCCATTAAAATTCAAGACGTGAACTTTTATTAGTTTTTTGAAGTTTTTAAAGACTTTCAAATGCTGAAAATAGTTTTTAAAGTTTTGCAGAGGCTAATAGAAACTGTGGAGGCCGGGGTAAGAAAGCTAAGAAATGCACAAAAACTAAAGATAGGAATGAGAGAAGTTTCACAAATTATCATCCCAATGGGAGTCCTAGTTTCACTGTCAAATTATCGCCATATCACATTGAAGGTTATAATAGATTGGTATGTTTGCTTTACTTCTTTTTTTTTCCAGCAATATTTGTACCTAACTGTGTAAGAGGCTTTCATTTTTCTATAGGAACTGAATGTATCGAAATTACAAACAAATCCCCAAATGTTTCTCTTGTAAATAGTCTTATGGAATAAATTTACTAACAGAAAACATATTCAAGGACTAATGTCAATTTATTCAATAAAAGAGAAAAAGTATAGCTAACATACTAAAGACACATTTGAAAATCAAAATAAGTAACAATAGAGACATTTAGGTATATTTTAATTATTGGTTTGACAGCCATGCACGTTACATATACTTATTGAATATATTTTAAGTAATATCTATTTTAAACCATGACCTGAAACAGATAATACCTAGATGGTTTTCGAAAGAATACATGAATGAGTTATTGCAACAGAAGGCCACAATTAGAAGTGTTGGTGAGGACAGGGCATGGTACGTGACGTTATACTTTGATAAAAGCAAGAGCAGTTTTATAATGCAGGTTGGTTGGAAGTCATTTTCAAAGGAACATGACTTGAAAGTTGGTGATGTATGTAAATTTGAGATGACTCAACGCAAACCACTTTCATTCACAATTACTATTATCCCAGCCACAAAGGAACCATGCCCAGAGCAGTTTCAAGGTATTTCTTTCATTATTATTGTTTTGTAATGATAAATAGTTTTAATTTGTTAACAAATAACAAACAATCATGTGTAACAAATTTTAAGGTTTAAATATACCTTGTCAATGTAAACATACTACTCTTTGCTTTTATTGTGTACAATTCATGAAAATATCTTTAAACTATGTTTTCTTTGTTCTTAATTACAGCAGATTCTGTAAGTCCGAATTTACATGACAAATTCAAGGTTTTTGTAACATCATTCGACAAGGTACGAATTACTTAAAATGTCATTACCATTTATATAGCCATGTGTGTGAATGTGTAGAATTTTAATTTGTTCTTATATATGCAGCTGGTTGTACTACCAAGTGAGCTGTTGAAGAGACATAATATATTTAGTGGAAATTTAGTGGAGTTGAAAGCAGAAGAAGGAACATGGTTTGTGGAGGTGAATTATGATCAACATCTCGATCATGGGTGGTTCACTAAAGGTTGGCAAGAATTTATGAGAGATCGCAAAGTGAAGATTGGAGACACTTGTTTGTTTGAGATGATTGACGTGCAAAATCATGTATTCAAGGTTTCAATTATTCCAGATGTTTAGAAGAATGTTTGTGTTTTGTTACTTTGTAATTAGATGTTATATGTTATATTTCATATAATCTTTTTACAATAGATATTTAGTTGTGTTAATGATGTAATTATTACTATCTAAGTTCATCTGTGAATGAATGCAAAGTGAAGATTGAGGACACTAGTTTTTATGAGATATTGATTGATTATCAAAATCATGTGGTCAGGGTTTCAATTAGAAGAACACTTATGTCTTTTGTTAGTTTGCAATTAGAAGATTACATTTCATATGAACTTCAGATGACCACTCTATGAAATATGAGTGCTTTTAGAATTTTCAATCTTTGATCTAAGAGAGCTTGTAACACCCAATCTATGCTAATTTTCCATGTTGCTTATCTTTCGTTACCTCCTCACTCTTTCGTAATACCAAGTCTCCTTCCTTCAAGCTTTGAGGTTTAACCTTTGTGTTGAATGTGTTCACGACAGTTATGCGCGGTATTTCTCTGACTTTGTCAAGTAAGTGAAGACATTCATGTTAAATTGTTTTGTTTTACAAAAGCTAGAGTCAAAACTCACTCAAATTGCAAGAATAAGAGCCAAGTATGACATGCAACGATGACCACGACACTAGCAAACAATATTGTAGTACCAACGACAGTGAAATTATCTTACAACCCCTGAAGAAAAAGAAAACCAACACAAATGAGAGCACTGCTACACCTCAAGGGACAAGCATTGGCAAGATAAAATATCATATGAATGCAACCCAGCAAAAAGTCTCAGGTAAAGTACATGTTTTCTGGAATGTACTTGCTTTATTTATTTTGTTTTTTTGAAGATTAAATTAATTTCATGACTGTCATAAAAAATAAAAATTTCAAGAGTTGAAAATTTTATTTTGTACCTTTTAAATGCTGAAAATAATTTAATTTTTTTTGCAGAGGCTAATAGAATCAGAGGAGGCAGTGGTAAGAAAGCTAATAAATACACAAAAAGTAAAGATGGGAATGAGAGAAGTTACACAAATTCTCAAGCCAATGAGAATCCCAATTTCACTCTCAAATTATCGCGATCCGATGTGGAAGGTGATAGATTAAAATTGGTATGTTTCCTATACTTTTTTTTTAGTAAACAGTCCAAATAATGTAAACATACTACTCTTTGCTTTTGATCCCTGACAAGGCTGTGGACATGCAGAAAACAACGACTCCAAATAAAATCAGAGACGATGCCAGAAGAAGATATGGAATATGTGAGCAATTTTGGAGAACGAATTTCAAACAGAAGCCCAAAAACACATGGTCTCAGGAGTATTCATCTTAATTTTATTTTTCAAGCTTTTATTGCGTACAATTCAAGAAAATATCCTTAAACTGTTTTCTTTGTTCTTAATTACTGCAGATTCTGTAAGTCCGAATTTACATGACAAATTCAAGGTTTTTGTAACATCATTAGACAAGGTATGAATTACTTAAAATGTTATTACATTGTATATAACTATGTTGTGAATGTAAATTTTTTAAATTTGTTCTTATATATGCAGTTGGTTGTACTACCAAGTGAGCTGTTAAAAAGACATGATATATTTAGTGGAAATTCGGTGGAGTTGAAAGTAGAGGAAGAAACATGGTTTGTGGAGGTGAGTTATAATGAGCATCTCGACTATGGGTGGTTCACTGAAGGCTGGCAAGAATTTGTAAGAGATTGCAAAGTAAAGACCGGAGACACTTGCTTGTTTGAGATGATTGATGTGCAAAATCATGTGTTCAAGGTTTCAATTGTTTGA
Protein sequence

>MS.gene31885.t1

MSSVHYGRGSEAKGMHFYQTIQLCELQDEELMIPRKFVERHWKDVSNPTSLRLPNGSEFKMNWVQRGDDVWLQNWKRFARSLRCGDLLVFQYKGGSDFHVIILDDSSLEIDYSCMRCNDEQEAKESDDDDDCVEIPNDHENTQQPLKKKKINSNDIATSAATPQGTNIGKRKININASLQKVSEANRNCGGRGKKAKKCTKTKDRNERSFTNYHPNGSPSFTVKLSPYHIEGYNRLIIPRWFSKEYMNELLQQKATIRSVGEDRAWYVTLYFDKSKSSFIMQVGWKSFSKEHDLKVGDVCKFEMTQRKPLSFTITIIPATKEPCPEQFQADSVSPNLHDKFKVFVTSFDKLVVLPSELLKRHNIFSGNLVELKAEEGTWFVEVNYDQHLDHGWFTKGWQEFMRDRKVKIGDTCLFEMIDVQNHVFKKKKTNTNESTATPQGTSIGKIKYHMNATQQKVSEANRIRGGSGKKANKYTKSKDGNERSYTNSQANENPNFTLKLSRSDVEGDRLKLAVDMQKTTTPNKIRDDARRRYGIYSVSPNLHDKFKVFVTSLDKLVVLPSELLKRHDIFSGNSVELKVEEETWFVEVSYNEHLDYGWFTEGWQEFVRDCKVKTGDTCLFEMIDVQNHVFKVSIV